Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045715.t1 | XP_024632514.1 | 97.4 | 538 | 13 | 1 | 1 | 538 | 1 | 537 | 6.20E-295 | 1022.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045715.t1 | Q9SAK4 | 75.3 | 534 | 125 | 1 | 4 | 537 | 1 | 527 | 7.6e-233 | 807.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045715.t1 | A0A396JH52 | 97.4 | 538 | 13 | 1 | 1 | 538 | 1 | 537 | 4.5e-295 | 1022.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045715.t1 | MTR_2g067660 | 95.127 | 513 | 22 | 1 | 29 | 538 | 10 | 522 | 0.0 | 998 |
MS.gene045715.t1 | MTR_3g078170 | 41.737 | 472 | 270 | 4 | 63 | 530 | 62 | 532 | 5.33e-110 | 338 |
MS.gene045715.t1 | MTR_4g107040 | 40.890 | 472 | 274 | 4 | 63 | 530 | 64 | 534 | 2.71e-107 | 332 |
MS.gene045715.t1 | MTR_3g078550 | 39.579 | 475 | 277 | 3 | 66 | 530 | 11 | 485 | 1.13e-106 | 328 |
MS.gene045715.t1 | MTR_4g106510 | 39.623 | 477 | 278 | 3 | 64 | 530 | 9 | 485 | 1.19e-106 | 328 |
MS.gene045715.t1 | MTR_3g078490 | 39.623 | 477 | 278 | 3 | 64 | 530 | 39 | 515 | 2.00e-106 | 329 |
MS.gene045715.t1 | MTR_8g064170 | 39.535 | 473 | 281 | 4 | 62 | 530 | 60 | 531 | 2.54e-102 | 318 |
MS.gene045715.t1 | MTR_3g078550 | 41.469 | 422 | 242 | 2 | 114 | 530 | 34 | 455 | 1.11e-101 | 315 |
MS.gene045715.t1 | MTR_8g083530 | 36.596 | 470 | 293 | 4 | 66 | 531 | 26 | 494 | 1.54e-100 | 313 |
MS.gene045715.t1 | MTR_6g086300 | 37.844 | 473 | 289 | 4 | 63 | 531 | 22 | 493 | 1.08e-98 | 308 |
MS.gene045715.t1 | MTR_6g086300 | 37.844 | 473 | 289 | 4 | 63 | 531 | 22 | 493 | 1.08e-98 | 308 |
MS.gene045715.t1 | MTR_6g086340 | 36.674 | 469 | 292 | 4 | 66 | 530 | 23 | 490 | 4.47e-94 | 296 |
MS.gene045715.t1 | MTR_3g078170 | 42.239 | 393 | 222 | 4 | 63 | 451 | 62 | 453 | 1.15e-90 | 286 |
MS.gene045715.t1 | MTR_8g083520 | 34.884 | 473 | 268 | 7 | 63 | 530 | 14 | 451 | 2.19e-85 | 272 |
MS.gene045715.t1 | MTR_8g064170 | 35.307 | 473 | 269 | 5 | 62 | 530 | 60 | 499 | 5.29e-82 | 265 |
MS.gene045715.t1 | MTR_3g078170 | 42.162 | 370 | 209 | 4 | 63 | 428 | 62 | 430 | 9.61e-82 | 261 |
MS.gene045715.t1 | MTR_3g078170 | 42.162 | 370 | 209 | 4 | 63 | 428 | 62 | 430 | 1.30e-81 | 262 |
MS.gene045715.t1 | MTR_8g083520 | 34.158 | 404 | 232 | 3 | 128 | 530 | 1 | 371 | 2.39e-74 | 241 |
MS.gene045715.t1 | MTR_1g014320 | 32.696 | 471 | 296 | 7 | 69 | 528 | 22 | 482 | 4.61e-73 | 241 |
MS.gene045715.t1 | MTR_4g131180 | 31.770 | 469 | 303 | 7 | 69 | 528 | 22 | 482 | 1.21e-71 | 237 |
MS.gene045715.t1 | MTR_1690s0010 | 40.181 | 331 | 192 | 4 | 66 | 392 | 12 | 340 | 8.59e-71 | 231 |
MS.gene045715.t1 | MTR_4g131180 | 32.102 | 433 | 278 | 6 | 69 | 493 | 22 | 446 | 2.61e-67 | 225 |
MS.gene045715.t1 | MTR_8g083530 | 38.080 | 323 | 195 | 4 | 66 | 384 | 26 | 347 | 5.57e-67 | 221 |
MS.gene045715.t1 | MTR_2g042330 | 29.878 | 492 | 330 | 8 | 44 | 525 | 1 | 487 | 3.67e-66 | 223 |
MS.gene045715.t1 | MTR_4g093170 | 31.027 | 477 | 318 | 7 | 62 | 530 | 41 | 514 | 3.51e-63 | 216 |
MS.gene045715.t1 | MTR_3g078490 | 36.257 | 342 | 210 | 2 | 64 | 397 | 9 | 350 | 9.02e-63 | 210 |
MS.gene045715.t1 | MTR_2g034160 | 30.085 | 472 | 305 | 9 | 77 | 530 | 63 | 527 | 3.73e-62 | 214 |
MS.gene045715.t1 | MTR_2g009750 | 30.625 | 480 | 323 | 7 | 58 | 530 | 10 | 486 | 1.03e-61 | 211 |
MS.gene045715.t1 | MTR_2g009750 | 30.353 | 481 | 324 | 7 | 58 | 530 | 10 | 487 | 3.11e-61 | 210 |
MS.gene045715.t1 | MTR_2g009750 | 30.309 | 485 | 328 | 7 | 53 | 530 | 4 | 485 | 7.42e-61 | 209 |
MS.gene045715.t1 | MTR_1399s0020 | 32.402 | 358 | 186 | 4 | 177 | 530 | 32 | 337 | 2.18e-50 | 176 |
MS.gene045715.t1 | MTR_8g094600 | 29.598 | 348 | 236 | 7 | 194 | 538 | 165 | 506 | 5.61e-40 | 152 |
MS.gene045715.t1 | MTR_2g097950 | 29.446 | 343 | 230 | 9 | 194 | 530 | 116 | 452 | 7.42e-40 | 152 |
MS.gene045715.t1 | MTR_8g076480 | 29.674 | 337 | 222 | 9 | 194 | 524 | 105 | 432 | 3.02e-37 | 144 |
MS.gene045715.t1 | MTR_1g029840 | 28.814 | 413 | 275 | 11 | 128 | 530 | 42 | 445 | 4.70e-37 | 143 |
MS.gene045715.t1 | MTR_1222s0010 | 32.533 | 375 | 235 | 10 | 104 | 473 | 10 | 371 | 3.56e-36 | 143 |
MS.gene045715.t1 | MTR_1g029840 | 28.329 | 413 | 277 | 11 | 128 | 530 | 42 | 445 | 5.77e-35 | 137 |
MS.gene045715.t1 | MTR_3g088150 | 28.824 | 340 | 233 | 8 | 194 | 530 | 114 | 447 | 5.95e-33 | 132 |
MS.gene045715.t1 | MTR_2g097950 | 27.647 | 340 | 207 | 8 | 194 | 531 | 116 | 418 | 5.54e-31 | 125 |
MS.gene045715.t1 | MTR_1314s0010 | 28.070 | 342 | 233 | 5 | 198 | 531 | 1 | 337 | 1.35e-30 | 122 |
MS.gene045715.t1 | MTR_4g065040 | 28.803 | 309 | 208 | 9 | 194 | 497 | 101 | 402 | 7.55e-27 | 114 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045715.t1 | AT1G79440 | 75.468 | 534 | 124 | 2 | 4 | 537 | 1 | 527 | 0.0 | 818 |
MS.gene045715.t1 | AT1G74920 | 40.580 | 483 | 277 | 3 | 64 | 536 | 9 | 491 | 7.43e-116 | 352 |
MS.gene045715.t1 | AT1G74920 | 41.201 | 483 | 269 | 5 | 64 | 536 | 9 | 486 | 5.97e-114 | 347 |
MS.gene045715.t1 | AT3G48170 | 38.205 | 479 | 286 | 3 | 62 | 530 | 7 | 485 | 8.99e-112 | 342 |
MS.gene045715.t1 | AT3G48000 | 39.619 | 525 | 297 | 6 | 25 | 530 | 5 | 528 | 6.12e-111 | 341 |
MS.gene045715.t1 | AT3G24503 | 39.496 | 476 | 280 | 5 | 63 | 532 | 20 | 493 | 1.40e-106 | 328 |
MS.gene045715.t1 | AT1G23800 | 40.169 | 473 | 278 | 4 | 62 | 530 | 53 | 524 | 1.42e-106 | 329 |
MS.gene045715.t1 | AT1G23800 | 42.202 | 327 | 184 | 4 | 62 | 384 | 53 | 378 | 7.94e-74 | 240 |
MS.gene045715.t1 | AT2G24270 | 32.484 | 471 | 297 | 9 | 69 | 528 | 22 | 482 | 1.75e-70 | 234 |
MS.gene045715.t1 | AT2G24270 | 32.484 | 471 | 297 | 9 | 69 | 528 | 22 | 482 | 1.75e-70 | 234 |
MS.gene045715.t1 | AT2G24270 | 32.484 | 471 | 297 | 9 | 69 | 528 | 22 | 482 | 2.54e-70 | 234 |
MS.gene045715.t1 | AT2G24270 | 32.484 | 471 | 297 | 9 | 69 | 528 | 62 | 522 | 3.02e-70 | 234 |
MS.gene045715.t1 | AT3G66658 | 32.225 | 481 | 293 | 11 | 72 | 530 | 58 | 527 | 4.06e-68 | 229 |
MS.gene045715.t1 | AT3G66658 | 32.688 | 465 | 280 | 11 | 72 | 514 | 58 | 511 | 6.68e-68 | 230 |
MS.gene045715.t1 | AT1G54100 | 30.901 | 466 | 311 | 6 | 67 | 525 | 25 | 486 | 9.75e-68 | 227 |
MS.gene045715.t1 | AT1G54100 | 30.901 | 466 | 311 | 6 | 67 | 525 | 25 | 486 | 9.75e-68 | 227 |
MS.gene045715.t1 | AT2G14170 | 30.818 | 477 | 319 | 7 | 62 | 530 | 4 | 477 | 1.11e-59 | 206 |
MS.gene045715.t1 | AT2G14170 | 30.818 | 477 | 319 | 7 | 62 | 530 | 113 | 586 | 9.89e-59 | 206 |
MS.gene045715.t1 | AT2G14170 | 31.121 | 437 | 293 | 5 | 62 | 493 | 113 | 546 | 1.01e-57 | 202 |
MS.gene045715.t1 | AT4G36250 | 29.060 | 351 | 237 | 9 | 194 | 538 | 104 | 448 | 9.02e-38 | 145 |
MS.gene045715.t1 | AT1G44170 | 29.345 | 351 | 233 | 8 | 194 | 538 | 45 | 386 | 5.83e-37 | 142 |
MS.gene045715.t1 | AT1G44170 | 27.804 | 428 | 284 | 11 | 124 | 538 | 34 | 449 | 8.80e-37 | 142 |
MS.gene045715.t1 | AT1G44170 | 27.804 | 428 | 284 | 11 | 124 | 538 | 34 | 449 | 8.80e-37 | 142 |
MS.gene045715.t1 | AT4G34240 | 29.226 | 349 | 236 | 7 | 194 | 538 | 29 | 370 | 8.61e-35 | 135 |
MS.gene045715.t1 | AT4G34240 | 29.226 | 349 | 236 | 7 | 194 | 538 | 171 | 512 | 3.29e-34 | 136 |
MS.gene045715.t1 | AT4G34240 | 29.226 | 349 | 236 | 7 | 194 | 538 | 156 | 497 | 3.43e-34 | 136 |
MS.gene045715.t1 | AT4G34240 | 30.137 | 219 | 147 | 5 | 194 | 411 | 171 | 384 | 4.65e-19 | 89.7 |
Find 131 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCTCCCAGCTTAACACTTC+TGG | 0.149958 | 2.3:+30654946 | MS.gene045715:CDS |
GCAGCTATGGCATACCTTTA+TGG | 0.187015 | 2.3:-30655028 | None:intergenic |
AGGAATTTGCATGAGAAAAT+TGG | 0.214581 | 2.3:-30653496 | None:intergenic |
CTTGGTGTTTGCAGCCTATA+GGG | 0.246903 | 2.3:+30657788 | MS.gene045715:intron |
ATATGGAATGGATGAATATT+TGG | 0.251337 | 2.3:+30663988 | MS.gene045715:CDS |
GAGGAGGCAAAACGTATATA+TGG | 0.286790 | 2.3:+30657052 | MS.gene045715:CDS |
CGAAACTAAACACACCTTTC+GGG | 0.299211 | 2.3:-30657857 | None:intergenic |
CACATGTTTGTCCGCTATTA+CGG | 0.300469 | 2.3:-30660369 | None:intergenic |
GGAAGAGAAGGTTCTAAATA+TGG | 0.316316 | 2.3:+30663971 | MS.gene045715:CDS |
GCTATAGATTCCCCAGTTGC+TGG | 0.320087 | 2.3:-30655264 | None:intergenic |
TTTAAAATTCTAGGTATCTC+TGG | 0.329976 | 2.3:+30659133 | MS.gene045715:intron |
TACTGTTTGCAGATAGGTTA+TGG | 0.331414 | 2.3:+30657004 | MS.gene045715:intron |
TCTTGGTGTTTGCAGCCTAT+AGG | 0.335864 | 2.3:+30657787 | MS.gene045715:intron |
TAGGTTTATAATCCAGCAAC+TGG | 0.348383 | 2.3:+30655252 | MS.gene045715:intron |
CCTCCCAGCTTAACACTTCT+GGG | 0.348585 | 2.3:+30654947 | MS.gene045715:CDS |
ATGGGAAATGCTCCTGATAT+TGG | 0.359517 | 2.3:+30658760 | MS.gene045715:CDS |
GTGGCTGAGGCTCTTGAATA+TGG | 0.363964 | 2.3:+30663790 | MS.gene045715:CDS |
TTGCAGCCTATAGGGGTTGT+AGG | 0.367445 | 2.3:+30657796 | MS.gene045715:intron |
GGGTGTTGTGAATGTGGTTA+TGG | 0.372415 | 2.3:+30658741 | MS.gene045715:intron |
AAAGCCTCTTAAAGAGTCTC+TGG | 0.372858 | 2.3:+30656879 | MS.gene045715:CDS |
TTCAAGGTATGATTTGCTAA+TGG | 0.374317 | 2.3:+30656813 | MS.gene045715:intron |
TCAGATCAAGTATGTCTGTC+TGG | 0.379564 | 2.3:+30664124 | MS.gene045715:intron |
ATTAAAGCGTCTCCAATATC+AGG | 0.394379 | 2.3:-30658772 | None:intergenic |
GTTAGCACAACTTATAACTT+TGG | 0.400254 | 2.3:+30656849 | MS.gene045715:CDS |
CTCTGATGCAAACTCAATAA+AGG | 0.403961 | 2.3:-30657032 | None:intergenic |
TCACCCAGAGACTCTTTAAG+AGG | 0.417656 | 2.3:-30656883 | None:intergenic |
CGCTTTAATCGCAAGTCCAC+AGG | 0.437860 | 2.3:+30658786 | MS.gene045715:CDS |
TACTCTAGACAGGAAGCATT+TGG | 0.441708 | 2.3:+30663500 | MS.gene045715:intron |
AAGGCCTCATTGGAGGGAAA+TGG | 0.455429 | 2.3:+30654983 | MS.gene045715:CDS |
ACGATCATGGCGTGTGGCTG+AGG | 0.456778 | 2.3:+30663777 | MS.gene045715:CDS |
AGGAGGCAAAACGTATATAT+GGG | 0.459546 | 2.3:+30657053 | MS.gene045715:CDS |
TTGAGAACTCAAGGCCTCAT+TGG | 0.462169 | 2.3:+30654973 | MS.gene045715:CDS |
TGATTTAGCATCGTGAATCA+AGG | 0.468574 | 2.3:-30661514 | None:intergenic |
ATGATGCAGGTGGCTCCATT+TGG | 0.475659 | 2.3:+30663926 | MS.gene045715:intron |
CAAACAGTATTCCACGATCA+TGG | 0.476757 | 2.3:+30663764 | MS.gene045715:CDS |
ATTGCACCTACAACCCCTAT+AGG | 0.478114 | 2.3:-30657802 | None:intergenic |
GCTCTTGAATATGGACTTGT+GGG | 0.482037 | 2.3:+30663799 | MS.gene045715:CDS |
TTTGGTGGAGTTAAACAGTC+TGG | 0.482571 | 2.3:+30663944 | MS.gene045715:CDS |
GACTGTTTAACTCCACCAAA+TGG | 0.484011 | 2.3:-30663941 | None:intergenic |
AATAGAATTCTTGTGCAAGA+AGG | 0.488408 | 2.3:+30660400 | MS.gene045715:CDS |
GGTGTTGTGAATGTGGTTAT+GGG | 0.496796 | 2.3:+30658742 | MS.gene045715:CDS |
ACAGCCCAGAAGTGTTAAGC+TGG | 0.497862 | 2.3:-30654951 | None:intergenic |
CTTTATTGAGTTTGCATCAG+AGG | 0.498643 | 2.3:+30657033 | MS.gene045715:CDS |
ATGCAGGTGGCTCCATTTGG+TGG | 0.500625 | 2.3:+30663929 | MS.gene045715:intron |
CAGCAGCTTCATTGATCAGA+GGG | 0.502868 | 2.3:-30661367 | None:intergenic |
CAGATCAAGTATGTCTGTCT+GGG | 0.503024 | 2.3:+30664125 | MS.gene045715:intron |
TTCCTTTCACTGCAACATCC+AGG | 0.503148 | 2.3:-30659199 | None:intergenic |
GTACATCCACATGCAAGGGC+TGG | 0.503999 | 2.3:-30657978 | None:intergenic |
CTCCGATCAGATAGAGGTGC+AGG | 0.506164 | 2.3:-30657085 | None:intergenic |
GTGATGGCAGCAATGAAGTT+TGG | 0.507355 | 2.3:+30653399 | None:intergenic |
GGCTGTTGGAAAGAAATTGA+TGG | 0.508579 | 2.3:+30658919 | MS.gene045715:CDS |
TTCTAGGTATCTCTGGAACT+TGG | 0.508677 | 2.3:+30659140 | MS.gene045715:intron |
ATGTAGCATGCATGGGTGGA+AGG | 0.509393 | 2.3:+30655289 | MS.gene045715:CDS |
AAATGGAGGGATGCTTATGA+TGG | 0.509646 | 2.3:+30655000 | MS.gene045715:CDS |
TTTGAGATTCAAAACTGAAG+AGG | 0.510569 | 2.3:+30663538 | MS.gene045715:CDS |
TTCACTGGCTCAACGGCTGT+TGG | 0.510811 | 2.3:+30658905 | MS.gene045715:CDS |
AATCTCAAAAGGGGTGCGAC+AGG | 0.514227 | 2.3:-30663524 | None:intergenic |
GATTCACGATGCTAAATCAA+AGG | 0.516164 | 2.3:+30661518 | MS.gene045715:CDS |
GCCTCATTGGAGGGAAATGG+AGG | 0.520306 | 2.3:+30654986 | MS.gene045715:CDS |
AATAACCTCCGATCAGATAG+AGG | 0.522208 | 2.3:-30657091 | None:intergenic |
GATGTAGGGTGTTGTGAATG+TGG | 0.522853 | 2.3:+30658735 | MS.gene045715:intron |
AGAAGGTTCTAAATATGGAA+TGG | 0.527661 | 2.3:+30663976 | MS.gene045715:CDS |
GGACTTGTGGGTATTAATGA+AGG | 0.530917 | 2.3:+30663811 | MS.gene045715:CDS |
TATAGCAGATGTAGCATGCA+TGG | 0.532222 | 2.3:+30655281 | MS.gene045715:CDS |
CAGAGTATGAAAGTTGGAGA+TGG | 0.536021 | 2.3:+30661037 | MS.gene045715:CDS |
AACAGCATCGAGCAATGCAT+TGG | 0.536232 | 2.3:-30661014 | None:intergenic |
AGAACTCAAGGCCTCATTGG+AGG | 0.538691 | 2.3:+30654976 | MS.gene045715:CDS |
CAGTCTGGCCTCGGAAGAGA+AGG | 0.539061 | 2.3:+30663959 | MS.gene045715:CDS |
GGCTCTTGAATATGGACTTG+TGG | 0.539232 | 2.3:+30663798 | MS.gene045715:CDS |
GTAAGGAAGATTACATTCAC+TGG | 0.539479 | 2.3:+30658890 | MS.gene045715:CDS |
GGAGTTAAACAGTCTGGCCT+CGG | 0.539521 | 2.3:+30663950 | MS.gene045715:CDS |
GCTGAACTCTCTATTCAAGC+TGG | 0.544334 | 2.3:+30658050 | MS.gene045715:CDS |
TTGGTGTTTGCAGCCTATAG+GGG | 0.550457 | 2.3:+30657789 | MS.gene045715:intron |
TACATCCACATGCAAGGGCT+GGG | 0.552015 | 2.3:-30657977 | None:intergenic |
AGGTTTATAATCCAGCAACT+GGG | 0.552416 | 2.3:+30655253 | MS.gene045715:intron |
GTCAGAGGCGTAAGTTCAGA+GGG | 0.555661 | 2.3:-30658014 | None:intergenic |
ACAATGAGATGGATATATCA+AGG | 0.560511 | 2.3:+30662174 | MS.gene045715:CDS |
GATGGCAGGTTCTGCTGAGA+CGG | 0.565405 | 2.3:+30658937 | MS.gene045715:CDS |
CACTGATGTCGACAATGAGA+TGG | 0.565903 | 2.3:+30662163 | MS.gene045715:CDS |
CAACTTATAACTTTGGAGCA+AGG | 0.568697 | 2.3:+30656856 | MS.gene045715:CDS |
TGGAATGGATGAATATTTGG+AGG | 0.569694 | 2.3:+30663991 | MS.gene045715:CDS |
TCTGGGCTGTTGAGAACTCA+AGG | 0.570477 | 2.3:+30654964 | MS.gene045715:CDS |
GCTGTTCAGAGTATGAAAGT+TGG | 0.571841 | 2.3:+30661031 | MS.gene045715:CDS |
TGTAGCATGCATGGGTGGAA+GGG | 0.572076 | 2.3:+30655290 | MS.gene045715:CDS |
GAAGCGCCTTTGATGATGAT+CGG | 0.573760 | 2.3:-30653443 | None:intergenic |
AGTCAGAGGCGTAAGTTCAG+AGG | 0.574214 | 2.3:-30658015 | None:intergenic |
TCTTGCTATGATTACCCGAA+AGG | 0.574956 | 2.3:+30657843 | MS.gene045715:CDS |
TAGGTATCTCTGGAACTTGG+TGG | 0.575713 | 2.3:+30659143 | MS.gene045715:intron |
GTTGGCCCAGCCCTTGCATG+TGG | 0.577913 | 2.3:+30657972 | MS.gene045715:CDS |
GTTGGAAAGAAATTGATGGC+AGG | 0.579906 | 2.3:+30658923 | MS.gene045715:CDS |
CCACAGTACATCCACATGCA+AGG | 0.581574 | 2.3:-30657983 | None:intergenic |
CGCACTCCGATCATCATCAA+AGG | 0.583187 | 2.3:+30653437 | MS.gene045715:CDS |
ATTTAGAACCTTCTCTTCCG+AGG | 0.584358 | 2.3:-30663967 | None:intergenic |
TGAAGTTTGGTGGCAGCATG+AGG | 0.586648 | 2.3:+30653412 | MS.gene045715:CDS |
TTTACTCCGCTCAGAAGCAG+TGG | 0.587384 | 2.3:-30656097 | None:intergenic |
TCTTAAAGAGTCTCTGGGTG+AGG | 0.589178 | 2.3:+30656885 | MS.gene045715:CDS |
ACTGCTAACGACACTAATGC+AGG | 0.589520 | 2.3:+30663572 | MS.gene045715:CDS |
GATCGTACCTTGCGAGTGAG+AGG | 0.593957 | 2.3:-30653516 | None:intergenic |
GAACTCAAGGCCTCATTGGA+GGG | 0.596382 | 2.3:+30654977 | MS.gene045715:CDS |
TCAGCCACACGCCATGATCG+TGG | 0.598907 | 2.3:-30663775 | None:intergenic |
CACAGTACATCCACATGCAA+GGG | 0.603160 | 2.3:-30657982 | None:intergenic |
CCCTCCATTTCCCTCCAATG+AGG | 0.605261 | 2.3:-30654987 | None:intergenic |
TATTGAGTTTGCATCAGAGG+AGG | 0.606237 | 2.3:+30657036 | MS.gene045715:CDS |
GATTACATTCACTGGCTCAA+CGG | 0.607378 | 2.3:+30658898 | MS.gene045715:CDS |
ACAGCAGCTTCATTGATCAG+AGG | 0.610218 | 2.3:-30661368 | None:intergenic |
CCTCATTGGAGGGAAATGGA+GGG | 0.611152 | 2.3:+30654987 | MS.gene045715:CDS |
TTCCTGCACCTCTATCTGAT+CGG | 0.612764 | 2.3:+30657083 | MS.gene045715:CDS |
GCAGATGTAGCATGCATGGG+TGG | 0.613906 | 2.3:+30655285 | MS.gene045715:CDS |
CAGCCCAGAAGTGTTAAGCT+GGG | 0.614718 | 2.3:-30654950 | None:intergenic |
GACCTGGATGTTGCAGTGAA+AGG | 0.620334 | 2.3:+30659197 | MS.gene045715:CDS |
GCAAATTCCTCTCACTCGCA+AGG | 0.622276 | 2.3:+30653509 | MS.gene045715:CDS |
AAGCCTCTTAAAGAGTCTCT+GGG | 0.626966 | 2.3:+30656880 | MS.gene045715:CDS |
ATAGCAAGAGGAAAGTTCCA+AGG | 0.630747 | 2.3:-30657829 | None:intergenic |
GCAGCAAAGTTCCGTAATAG+CGG | 0.634199 | 2.3:+30660358 | MS.gene045715:CDS |
TGAAGGAGTAATTTCAACAG+AGG | 0.634628 | 2.3:+30663828 | MS.gene045715:CDS |
GCTGCAGCTAAAGCAGTCAG+AGG | 0.635026 | 2.3:-30658029 | None:intergenic |
ATAGCAGATGTAGCATGCAT+GGG | 0.638114 | 2.3:+30655282 | MS.gene045715:CDS |
TCTATATGCATCAAAAGCAG+AGG | 0.639219 | 2.3:-30655331 | None:intergenic |
GGAGGCAAAACGTATATATG+GGG | 0.645606 | 2.3:+30657054 | MS.gene045715:CDS |
ATGGCAGCAATGAAGTTTGG+TGG | 0.647612 | 2.3:+30653402 | MS.gene045715:CDS |
TCGACATCAGTGATGACTGT+TGG | 0.647888 | 2.3:-30662152 | None:intergenic |
CTGCACCTCTATCTGATCGG+AGG | 0.653878 | 2.3:+30657086 | MS.gene045715:CDS |
GGTTTATAATCCAGCAACTG+GGG | 0.656115 | 2.3:+30655254 | MS.gene045715:intron |
TTTCGGGTAATCATAGCAAG+AGG | 0.660774 | 2.3:-30657841 | None:intergenic |
TTGTAGGTGCAATTACACCT+TGG | 0.661704 | 2.3:+30657812 | MS.gene045715:CDS |
CCCAGAAGTGTTAAGCTGGG+AGG | 0.664415 | 2.3:-30654947 | None:intergenic |
CCTTGCATGTGGATGTACTG+TGG | 0.672326 | 2.3:+30657983 | MS.gene045715:CDS |
GCAAAACCACTGCTTCTGAG+CGG | 0.689500 | 2.3:+30656091 | MS.gene045715:CDS |
TATTCCACGATCATGGCGTG+TGG | 0.690497 | 2.3:+30663771 | MS.gene045715:CDS |
TATTCAAGCTGGAATACCTG+CGG | 0.705711 | 2.3:+30658061 | MS.gene045715:CDS |
GGGGCAAAAGTTATTCTTGG+GGG | 0.708930 | 2.3:+30662095 | MS.gene045715:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 30653402 | 30664166 | 30653402 | ID=MS.gene045715 |
chr2.3 | mRNA | 30653402 | 30664166 | 30653402 | ID=MS.gene045715.t1;Parent=MS.gene045715 |
chr2.3 | exon | 30653402 | 30653530 | 30653402 | ID=MS.gene045715.t1.exon1;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30653402 | 30653530 | 30653402 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30654922 | 30655035 | 30654922 | ID=MS.gene045715.t1.exon2;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30654922 | 30655035 | 30654922 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30655255 | 30655354 | 30655255 | ID=MS.gene045715.t1.exon3;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30655255 | 30655354 | 30655255 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30656085 | 30656133 | 30656085 | ID=MS.gene045715.t1.exon4;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30656085 | 30656133 | 30656085 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30656819 | 30656906 | 30656819 | ID=MS.gene045715.t1.exon5;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30656819 | 30656906 | 30656819 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30657016 | 30657126 | 30657016 | ID=MS.gene045715.t1.exon6;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30657016 | 30657126 | 30657016 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30657802 | 30657864 | 30657802 | ID=MS.gene045715.t1.exon7;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30657802 | 30657864 | 30657802 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30657972 | 30658082 | 30657972 | ID=MS.gene045715.t1.exon8;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30657972 | 30658082 | 30657972 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30658742 | 30658807 | 30658742 | ID=MS.gene045715.t1.exon9;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30658742 | 30658807 | 30658742 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30658890 | 30658967 | 30658890 | ID=MS.gene045715.t1.exon10;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30658890 | 30658967 | 30658890 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30659146 | 30659223 | 30659146 | ID=MS.gene045715.t1.exon11;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30659146 | 30659223 | 30659146 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30660355 | 30660421 | 30660355 | ID=MS.gene045715.t1.exon12;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30660355 | 30660421 | 30660355 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30660996 | 30661081 | 30660996 | ID=MS.gene045715.t1.exon13;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30660996 | 30661081 | 30660996 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30661365 | 30661397 | 30661365 | ID=MS.gene045715.t1.exon14;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30661365 | 30661397 | 30661365 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30661507 | 30661539 | 30661507 | ID=MS.gene045715.t1.exon15;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30661507 | 30661539 | 30661507 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30662095 | 30662195 | 30662095 | ID=MS.gene045715.t1.exon16;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30662095 | 30662195 | 30662095 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30663508 | 30663593 | 30663508 | ID=MS.gene045715.t1.exon17;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30663508 | 30663593 | 30663508 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30663743 | 30663849 | 30663743 | ID=MS.gene045715.t1.exon18;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30663743 | 30663849 | 30663743 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30663935 | 30664012 | 30663935 | ID=MS.gene045715.t1.exon19;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30663935 | 30664012 | 30663935 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
chr2.3 | exon | 30664128 | 30664166 | 30664128 | ID=MS.gene045715.t1.exon20;Parent=MS.gene045715.t1 |
chr2.3 | CDS | 30664128 | 30664166 | 30664128 | ID=cds.MS.gene045715.t1;Parent=MS.gene045715.t1 |
Gene Sequence |
Protein sequence |