AlfalfaGEDB | MS.gene56929

M. sativa cultivar XinJiangDaYe / MS.gene56929

KEGG: K00128
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016620 GO:0016903 GO:0055114
PFAM: PF00171.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56929.t1	RHN63527.1	98.3	517	9	0	26	542	28	544	1.80E-297	1031.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56929.t1	Q9SU63	79.1	521	103	2	28	542	18	538	7.1e-247	854.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56929.t1	A0A396IKR3	98.3	517	9	0	26	542	28	544	1.3e-297	1031.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene56929	0.801625	8.24E-49	-1.69E-46
MS.gene049907	MS.gene56929	0.819783	9.69E-53	-1.69E-46
MS.gene051255	MS.gene56929	0.800564	1.36E-48	-1.69E-46
MS.gene051360	MS.gene56929	0.851812	6.95E-61	-1.69E-46
MS.gene053169	MS.gene56929	0.832566	8.79E-56	-1.69E-46
MS.gene054556	MS.gene56929	0.823311	1.48E-53	-1.69E-46
MS.gene05492	MS.gene56929	0.801158	1.03E-48	-1.69E-46
MS.gene056902	MS.gene56929	0.822962	1.79E-53	-1.69E-46
MS.gene058700	MS.gene56929	0.80091	1.15E-48	-1.69E-46
MS.gene058948	MS.gene56929	0.819182	1.33E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene015744	MS.gene56929	PPI
MS.gene038961	MS.gene56929	PPI
MS.gene042956	MS.gene56929	PPI
MS.gene05525	MS.gene56929	PPI
MS.gene56929	MS.gene05926	PPI
MS.gene56929	MS.gene01226	PPI
MS.gene56929	MS.gene55995	PPI
MS.gene56929	MS.gene012582	PPI
MS.gene56929	MS.gene057392	PPI
MS.gene56929	MS.gene69422	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene56929.t1	MTR_4g107040	97.426	544	12	1	1	542	1	544	1091
MS.gene56929.t1	MTR_3g078170	80.996	542	103	0	1	542	1	542	931
MS.gene56929.t1	MTR_8g064170	80.119	503	99	1	41	542	39	541	868
MS.gene56929.t1	MTR_8g064170	74.751	503	94	2	41	542	39	509	800
MS.gene56929.t1	MTR_3g078170	79.075	454	95	0	1	454	1	454	762
MS.gene56929.t1	MTR_3g078170	78.654	431	92	0	1	431	1	431	720
MS.gene56929.t1	MTR_3g078170	78.341	434	94	0	1	434	1	434	719
MS.gene56929.t1	MTR_6g086300	57.320	485	207	0	58	542	18	502	579
MS.gene56929.t1	MTR_6g086300	57.320	485	207	0	58	542	18	502	579
MS.gene56929.t1	MTR_8g083530	54.845	485	219	0	58	542	19	503	572

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56929.t1	AT3G48000	77.901	543	114	2	1	542	1	538	0.0	887
MS.gene56929.t1	AT1G23800	78.330	503	108	1	41	542	32	534	0.0	855
MS.gene56929.t1	AT1G23800	78.386	347	74	1	41	386	32	378	0.0	593
MS.gene56929.t1	AT3G24503	54.639	485	219	1	59	542	17	501	0.0	561
MS.gene56929.t1	AT3G48170	42.222	495	273	7	57	541	3	494	5.81e-128	384
MS.gene56929.t1	AT1G74920	40.286	489	279	6	63	541	9	494	1.19e-117	357
MS.gene56929.t1	AT1G74920	40.491	489	273	7	63	541	9	489	9.08e-116	352
MS.gene56929.t1	AT1G79440	41.102	472	273	4	62	532	53	520	7.25e-109	335
MS.gene56929.t1	AT3G66658	28.782	476	313	10	75	533	62	528	1.83e-54	193
MS.gene56929.t1	AT3G66658	28.782	476	313	10	75	533	62	528	4.68e-54	192

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Find 118 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAAACAGATTTAGCA+CGG	0.643860	8.1:-18679688	MS.gene56929:CDS
AAACATAGGCACTTCAGCTT+TGG	0.416059	8.1:+18679052	None:intergenic
AAACTATATTCAGAACACCT+GGG	0.660081	8.1:+18678437	None:intergenic
AACAATTTGAGAAAGTACTT+AGG	0.548163	8.1:-18677377	MS.gene56929:CDS
AACACTTGATCCACGCACAG+GGG	0.713063	8.1:-18679385	MS.gene56929:CDS
AACCACGCAGGATTGTTTAG+TGG	0.492355	8.1:+18676458	None:intergenic
AACGCTACACTTGAATGTGG+GGG	0.677284	8.1:-18677330	MS.gene56929:CDS
AACTATATTCAGAACACCTG+GGG	0.624850	8.1:+18678438	None:intergenic
AACTTCAAGATTGTTTGAAC+TGG	0.321595	8.1:+18677115	None:intergenic
AAGCCAGTGACATTAGAACT+TGG	0.577070	8.1:-18677927	MS.gene56929:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATAATGGTTAGACTG+GGG	+	chr8.1:18677424-18677443	None:intergenic	30.0%
AAACACAAACAGATTTAGCA+CGG	-	chr8.1:18676663-18676682	MS.gene56929:CDS	30.0%
AAACTATATTCAGAACACCT+GGG	+	chr8.1:18677917-18677936	None:intergenic	30.0%
AACAAAGAAAACAAGCAAGT+AGG	+	chr8.1:18679282-18679301	None:intergenic	30.0%
AACTTCAAGATTGTTTGAAC+TGG	+	chr8.1:18679239-18679258	None:intergenic	30.0%
AAGGGTAATTGTTTCACAAT+TGG	+	chr8.1:18677748-18677767	None:intergenic	30.0%
ACTTCAAGATTGTTTGAACT+GGG	+	chr8.1:18679238-18679257	None:intergenic	30.0%
ATAACCTCTCTTATACAGTA+AGG	+	chr8.1:18678220-18678239	None:intergenic	30.0%
ATAAGGAATTGAATACCTAG+TGG	+	chr8.1:18676541-18676560	None:intergenic	30.0%
ATAAGTAGAGGAAAATTCCA+AGG	+	chr8.1:18677551-18677570	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	18676454	18679919	18676454	ID=MS.gene56929
chr8.1	mRNA	18676454	18679919	18676454	ID=MS.gene56929.t1;Parent=MS.gene56929
chr8.1	exon	18679829	18679919	18679829	ID=MS.gene56929.t1.exon1;Parent=MS.gene56929.t1
chr8.1	CDS	18679829	18679919	18679829	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1
chr8.1	exon	18679598	18679732	18679598	ID=MS.gene56929.t1.exon2;Parent=MS.gene56929.t1
chr8.1	CDS	18679598	18679732	18679598	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1
chr8.1	exon	18679278	18679420	18679278	ID=MS.gene56929.t1.exon3;Parent=MS.gene56929.t1
chr8.1	CDS	18679278	18679420	18679278	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1
chr8.1	exon	18679027	18679180	18679027	ID=MS.gene56929.t1.exon4;Parent=MS.gene56929.t1
chr8.1	CDS	18679027	18679180	18679027	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1
chr8.1	exon	18678694	18678923	18678694	ID=MS.gene56929.t1.exon5;Parent=MS.gene56929.t1
chr8.1	CDS	18678694	18678923	18678694	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1
chr8.1	exon	18678381	18678470	18678381	ID=MS.gene56929.t1.exon6;Parent=MS.gene56929.t1
chr8.1	CDS	18678381	18678470	18678381	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1
chr8.1	exon	18677842	18678015	18677842	ID=MS.gene56929.t1.exon7;Parent=MS.gene56929.t1
chr8.1	CDS	18677842	18678015	18677842	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1
chr8.1	exon	18677618	18677755	18677618	ID=MS.gene56929.t1.exon8;Parent=MS.gene56929.t1
chr8.1	CDS	18677618	18677755	18677618	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1
chr8.1	exon	18677272	18677409	18677272	ID=MS.gene56929.t1.exon9;Parent=MS.gene56929.t1
chr8.1	CDS	18677272	18677409	18677272	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1
chr8.1	exon	18677112	18677173	18677112	ID=MS.gene56929.t1.exon10;Parent=MS.gene56929.t1
chr8.1	CDS	18677112	18677173	18677112	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1
chr8.1	exon	18676454	18676727	18676454	ID=MS.gene56929.t1.exon11;Parent=MS.gene56929.t1
chr8.1	CDS	18676454	18676727	18676454	ID=cds.MS.gene56929.t1;Parent=MS.gene56929.t1

Gene Sequence

>MS.gene56929

ATGGCAGCTCGCACACTTTCTCGTTTGCTCTCTCGCTCCCTATCTTCTTCTTCTTCTGGAGCTTCTGCTTCTCTGCTTCGCTCACCACTAGGTATTCAATTCCTTATCCTGTAACTGTAACTGTGTGTGGATATGTTTTTTTCTTATGCATGGAATAAGATTTCTGGTTTATGTTTTGTTTCCTCAGGAAGAAAATCTGAAGGGTTGATAAACACAAACAGATTTAGCACGGCTGCAGCTGTTGAGGAATTGATTACTCCACAAGTTTCAATAAACTATACACAGCATCTTATAAATGGAAAGTTTGTGGATGCTGCATCAGGTAATGTTTAAAGGTCGTTGTTTATTACTCGCTCTATCTCAAAATAATAGTCGTTTAAGGTTTGTGCAATATCTTTAAAGAAATGATTAATTATGTTGATTTCAATGATAAACTATTGAGTGGAAGTGAAAACAAGTTAGGCTCTTATATTAAACATGGAGTTTCTTTTGATTTCAGGGAAAACATTTCCAACACTTGATCCACGCACAGGGGAAGTGATTGCTAATGTTGCTGAAGGTGATGCTGAAGATATTAACCGTGCAGTATCAGCAGCTCGCGAGGCCTTTGATAATGGACCTTGGCCTAAAATGAGTGCTTATGTAAGCATTTCCTGCGAAGTGTCCTTTCTTGCATGAACTTCTATATATTAGCTTGAAATTTATGATTATGGTGATGGTTTATTGATAACTCTTTCAGGAAAGATGTCGTATATTGCTGCGTTTTGCTGATTTGGTTGAGAAGCACAATGATGAGATTGCAGCTCTGGAGGCATGGAACAATGGAAAGCTTTATGAACAGGCTGCCAAAGCTGAAGTGCCTATGTTTGTGCGTTTATTTCGCTACTATGCTGGTAGGATCAGTAACAACATGTTCCTTGTGTCAATGCTTTTTTAATTGTTGTAAAAAGAATAATCATGCTAATATCCCCAGTCTAACCATTATTGTTTTTACAGGTTGGGCAGATAAAATTCATGGGCTGACAGTCCCGGCTGATGGAGATTATCATGTCCAGACATTGCATGAACCAATTGGTGTAGCAGGACAAATTATACCTTGGAATTTTCCTCTACTTATGTTTGCTTGGAAAGTTGGACCAGCTCTAGCAACTGGTAATACCATTGTCCTCAAGACTGCTGAACAAACACCGCTAACGGCTCTAGTTGTGGCAAAACTACTTCATGAGGTCAGCTCATAACTCGTAAGCCATGCTTTGATGTCAAAAGAAATACAGAATGCTCTGATGTGATGCCAATTGTGAAACAATTACCCTTGCCTTTAGTTTTTGACCTCATAAGTTAACCTCAATTTTGGCTAGCATGCTGATTATCTTATTTAGATTTCTATGACTATGTAAGTTGTATTTTTATTTCCAAATGTTAAGCTGTAATCTTCACACTTTTGGGCAGGCCGGTCTACCCCCAGGTGTTCTGAATATAGTTTCTGGCTATGGTCCAACTGCTGGTGCACCTCTTGCAAGTCATATGGATGTGGACAAGGTATTTTTAGAATCAAGCATCTGAACTTCTACTATATATTAATATATAGTTGAAATAGTTCTATAAAGCATCACCGATGAACTTAGCTTGATGTTAAAAATGCATTATTCCAATCCATTATGCGTTGCTGTTAAATATGTTTAGGATACTATCAAAATGCATTATGATTGAGAGCATGATTCGTCTAAATTTCATGATGATATTGATAGTAGTTCTTGTTTATACCTTACTGTATAAGAGAGGTTATAAAAATTGGTAAATAATGAAAGAAATCAAGACATGTTATCTTGAAGTTAGCATTCACTGGATAAAATTGATTCATTATTTGGCATACACATTTAATTTTTTTACTTCTAATTTTGCAGTTAGCGTTCACTGGATCGACAGACACCGGAAAAACTGTACTTGAGCTGGCTGCAAGAAGCAATCTTAAGCCAGTGACATTAGAACTTGGAGGGAAATCGCCTTTCATCGTTTGTGAGGATGCTGATATTAACAAAGCTGTTGAAATTGCTCACTTTGCTCTTTTCTTTAATCAGGTTTGTGCAATCGATTTCCACTACTTTCTAAAACAAATACGGAAATGTGGAGTAGAAGCTTATGCCTTATGCTGGATGCTTTTCAGGGGCAATGTTGCTGTGCTGGATCCCGTACCTTCGTACATGAGCGTATCTATGATGAGTTCTTGGAGAAATCAAAGGAACGAGCTTTGAGACGTGTTGTTGGTGATCCATTTAAGAAGGGTGTAGAGCAAGGTCCTCAGGTATTTTTATATTCAAGTTAACTTTATTACTATTGTAACATTACCCTATAGGTCTATGTTCCTTGTCTCATTTTTCTTTTTCTTTTCTAGTGTTTATTTGACTATCCTTTTCATGGGAAAAGCTAATGTTTGACAGAACAACACATTCTTGATCATACTGTGATTTAACAACATAACACTGTTTTGTGGTTCTTGCATATAATCACAGATTGATTCGGAACAATTTGAGAAAGTACTTAGGTATATAAAGTCTGGAATTGATAGCAACGCTACACTTGAATGTGGGGGTGGGAGATTGGGTTCAAAAGGCTTCTTTGTCCAGCCAACTGTATTTTCAAATGTTCAGGTATAGATTATTTGCCGCAAGTGACTGTTTACAGAAATGCACCGTAAGATCGTGTATTGTGGACCATTTTCTAACACATGTTAATGGCTATTACATAGGATGATATGTTGATAGCTAAAGATGAAATATTTGGCCCAGTTCAAACAATCTTGAAGTTCAAGTGAGTGAAATTGGAATCCTACTTGCTTGTTTTCTTTGTTAAAATTCAGGAAGATTACCATTATGTTCCAACTTCAAAGCTATTCTGCATGGGATTCTTCTAAATGAATCAATTTCATCGTTATTTGCAATCACACTTGAAAAGAATTTTATACACATATTCAATCATATTTCAGTATGGCATCATGCATAATATGGCTTTCTAAAATATTTACATAAAATTTTAAATGAAAATGATCAGACGCCTGTCTAAAATGTTTGTATACGGTTGGTCCTTAGTTATTAAATTCTTTATTAAATTAGAATTCAAGACAGTACCTTGGAATATTTGTAGTGTGGCACGCAATGTGGAGTTTTTCTAATATTTTATATTTTATATTTATAGGGACATTGATGAAGTGATACGACGGGCAAATGCGACACGTTATGGTTTAGCAGCAGGTGTTTTCACAAACAACGTAAGCACAGCCAACACTTTGATGCGAGCACTGAGAGCTGGAACAGTGTGGATTAATTGCTTTGATGTGTTTGATGCTGCAATTCCTTTTGGTGGTTACAAGATGAGTGGGATTGGCAGGGAGAAAGGAACATACAGTCTTCACAACTATCTGCAGGTAAAAGCTGTGGTGTCCCCACTAAACAATCCTGCGTGGTTGTAA

Protein sequence

>MS.gene56929.t1

MAARTLSRLLSRSLSSSSSGASASLLRSPLGRKSEGLINTNRFSTAAAVEELITPQVSINYTQHLINGKFVDAASGKTFPTLDPRTGEVIANVAEGDAEDINRAVSAAREAFDNGPWPKMSAYERCRILLRFADLVEKHNDEIAALEAWNNGKLYEQAAKAEVPMFVRLFRYYAGWADKIHGLTVPADGDYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALATGNTIVLKTAEQTPLTALVVAKLLHEAGLPPGVLNIVSGYGPTAGAPLASHMDVDKLAFTGSTDTGKTVLELAARSNLKPVTLELGGKSPFIVCEDADINKAVEIAHFALFFNQGQCCCAGSRTFVHERIYDEFLEKSKERALRRVVGDPFKKGVEQGPQIDSEQFEKVLRYIKSGIDSNATLECGGGRLGSKGFFVQPTVFSNVQDDMLIAKDEIFGPVQTILKFKDIDEVIRRANATRYGLAAGVFTNNVSTANTLMRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGTYSLHNYLQVKAVVSPLNNPAWL