AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25940.t1 MTR_3g078170 96.863 542 17 0 1 542 1 542 0.0 1097
MS.gene25940.t1 MTR_4g107040 83.236 513 86 0 30 542 32 544 0.0 916
MS.gene25940.t1 MTR_3g078170 96.681 452 15 0 1 452 1 452 0.0 910
MS.gene25940.t1 MTR_3g078170 96.083 434 17 0 1 434 1 434 0.0 867
MS.gene25940.t1 MTR_3g078170 96.520 431 15 0 1 431 1 431 0.0 867
MS.gene25940.t1 MTR_8g064170 79.324 503 103 1 41 542 39 541 0.0 863
MS.gene25940.t1 MTR_8g064170 74.354 503 96 2 41 542 39 509 0.0 795
MS.gene25940.t1 MTR_6g086300 57.438 484 206 0 59 542 19 502 0.0 571
MS.gene25940.t1 MTR_6g086300 57.438 484 206 0 59 542 19 502 0.0 571
MS.gene25940.t1 MTR_8g083530 54.545 484 220 0 59 542 20 503 0.0 564
MS.gene25940.t1 MTR_6g086340 55.165 484 217 0 59 542 17 500 0.0 547
MS.gene25940.t1 MTR_8g083520 52.066 484 199 1 59 542 11 461 0.0 518
MS.gene25940.t1 MTR_8g083520 51.449 414 168 1 129 542 1 381 2.02e-150 436
MS.gene25940.t1 MTR_8g083530 53.939 330 152 0 59 388 20 349 1.70e-123 367
MS.gene25940.t1 MTR_2g067660 41.737 472 270 4 62 532 47 514 3.91e-110 338
MS.gene25940.t1 MTR_4g106510 40.862 487 275 6 65 541 11 494 9.29e-109 334
MS.gene25940.t1 MTR_3g078550 39.014 487 284 6 65 541 11 494 3.03e-108 333
MS.gene25940.t1 MTR_3g078550 40.085 469 264 7 83 541 3 464 2.53e-106 327
MS.gene25940.t1 MTR_3g078490 37.782 487 290 6 65 541 41 524 2.98e-100 313
MS.gene25940.t1 MTR_1690s0010 43.064 346 191 5 59 401 5 347 5.68e-78 249
MS.gene25940.t1 MTR_2g034160 30.042 476 307 9 75 533 62 528 1.16e-60 211
MS.gene25940.t1 MTR_3g078490 36.826 334 200 5 65 390 11 341 9.99e-57 194
MS.gene25940.t1 MTR_2g042330 29.684 475 312 11 65 528 25 488 2.24e-53 189
MS.gene25940.t1 MTR_1g014320 29.132 484 323 10 67 541 21 493 5.65e-51 182
MS.gene25940.t1 MTR_4g093170 32.444 487 307 12 64 538 44 520 1.49e-50 182
MS.gene25940.t1 MTR_2g009750 31.828 487 310 13 64 538 17 493 3.68e-50 180
MS.gene25940.t1 MTR_2g009750 31.976 491 303 14 64 538 16 491 2.02e-49 178
MS.gene25940.t1 MTR_2g009750 31.976 491 303 14 64 538 17 492 2.23e-49 178
MS.gene25940.t1 MTR_4g131180 28.893 488 319 11 67 541 21 493 1.03e-48 176
MS.gene25940.t1 MTR_4g131180 29.062 437 291 9 67 495 21 446 2.24e-44 164
MS.gene25940.t1 MTR_1399s0020 29.457 387 216 6 159 539 12 347 1.14e-39 147
MS.gene25940.t1 MTR_8g076480 29.345 351 234 8 186 533 100 439 1.13e-34 137
MS.gene25940.t1 MTR_1222s0010 32.778 360 212 12 129 476 31 372 1.75e-34 138
MS.gene25940.t1 MTR_1g029840 28.289 456 287 13 97 533 12 446 2.99e-32 130
MS.gene25940.t1 MTR_1g029840 30.612 343 228 8 194 533 111 446 2.85e-31 127
MS.gene25940.t1 MTR_8g094600 29.155 343 233 8 194 533 164 499 2.84e-30 125
MS.gene25940.t1 MTR_2g097950 27.484 473 303 17 78 532 2 452 1.21e-27 116
MS.gene25940.t1 MTR_3g088150 29.661 354 217 11 194 533 113 448 5.57e-27 114
MS.gene25940.t1 MTR_1314s0010 28.902 346 224 7 199 532 1 336 1.89e-26 110
MS.gene25940.t1 MTR_2g097950 25.536 466 286 14 78 532 2 417 2.22e-23 103
MS.gene25940.t1 MTR_4g065040 28.032 371 247 13 135 495 38 398 2.42e-21 97.8
MS.gene25940.t1 MTR_0002s0820 73.684 57 15 0 288 344 92 148 7.30e-20 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25940.t1 AT3G48000 75.138 543 129 2 1 542 1 538 0.0 872
MS.gene25940.t1 AT1G23800 75.775 516 120 1 27 542 24 534 0.0 842
MS.gene25940.t1 AT1G23800 74.167 360 88 1 27 386 24 378 0.0 576
MS.gene25940.t1 AT3G24503 54.527 486 220 1 58 542 16 501 0.0 554
MS.gene25940.t1 AT3G48170 41.889 487 270 6 65 541 11 494 1.63e-123 372
MS.gene25940.t1 AT1G74920 39.836 487 280 6 65 541 11 494 6.29e-113 345
MS.gene25940.t1 AT1G74920 40.041 487 274 7 65 541 11 489 2.97e-111 340
MS.gene25940.t1 AT1G79440 41.393 488 280 5 46 532 38 520 1.23e-107 332
MS.gene25940.t1 AT3G66658 29.412 476 310 9 75 533 62 528 6.45e-57 199
MS.gene25940.t1 AT3G66658 29.412 476 310 9 75 533 62 528 1.08e-56 200
MS.gene25940.t1 AT2G14170 32.200 441 280 10 64 495 7 437 2.16e-55 194
MS.gene25940.t1 AT1G54100 28.814 472 304 13 74 528 31 487 2.49e-55 194
MS.gene25940.t1 AT1G54100 28.814 472 304 13 74 528 31 487 2.49e-55 194
MS.gene25940.t1 AT2G14170 32.112 464 293 12 41 495 96 546 8.72e-55 194
MS.gene25940.t1 AT2G14170 32.112 464 293 12 41 495 96 546 1.76e-54 194
MS.gene25940.t1 AT2G24270 29.293 495 308 13 67 541 21 493 2.76e-47 172
MS.gene25940.t1 AT2G24270 29.293 495 308 13 67 541 21 493 2.83e-47 172
MS.gene25940.t1 AT2G24270 29.293 495 308 13 67 541 21 493 2.83e-47 172
MS.gene25940.t1 AT2G24270 29.293 495 308 13 67 541 61 533 3.69e-47 172
MS.gene25940.t1 AT1G44170 29.025 441 287 15 105 533 16 442 1.59e-34 136
MS.gene25940.t1 AT1G44170 29.025 441 287 15 105 533 16 442 1.59e-34 136
MS.gene25940.t1 AT1G44170 30.595 353 231 10 184 533 38 379 1.97e-33 132
MS.gene25940.t1 AT4G36250 27.533 454 300 14 95 533 2 441 3.45e-32 129
MS.gene25940.t1 AT4G34240 30.636 346 224 9 194 533 28 363 7.63e-30 121
MS.gene25940.t1 AT4G34240 30.636 346 224 9 194 533 170 505 2.82e-29 122
MS.gene25940.t1 AT4G34240 30.636 346 224 9 194 533 155 490 2.93e-29 122
MS.gene25940.t1 AT4G34240 39.216 153 84 5 194 343 170 316 7.30e-14 73.9

Find 122 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGTGTTCACAAATAATT+TGG 0.176739 3.2:-69069959 MS.gene25940:CDS
TAGGGTCAATGTTGTTGTTC+TGG 0.180407 3.2:-69071286 MS.gene25940:CDS
CTAAATGTTGTGTCTGGTTT+TGG 0.238235 3.2:-69072189 MS.gene25940:CDS
GCATCCTCACACACTATAAA+TGG 0.282241 3.2:+69071431 None:intergenic
TACACAAAGAATCTCATTAA+TGG 0.283163 3.2:-69074249 MS.gene25940:CDS
GCTGCAAATAAACCAGTTAA+AGG 0.286185 3.2:+69072353 None:intergenic
GCTTCTCTGCTTCATACATT+AGG 0.294336 3.2:-69074451 MS.gene25940:intron
TACATACTTGAATTTCAATA+TGG 0.300087 3.2:+69070181 None:intergenic
GCTGAACAAACACCTTTAAC+TGG 0.301971 3.2:-69072365 MS.gene25940:CDS
CATACATAAGGGGTCATCTT+TGG 0.302122 3.2:+69073982 None:intergenic
CCTATTGCGTGTTGCTGATT+TGG 0.306819 3.2:-69072778 MS.gene25940:CDS
ACACGTTATGGTCTTGCTTC+AGG 0.317634 3.2:-69069979 MS.gene25940:CDS
CATGAACCAATTGGAGTTGC+AGG 0.328979 3.2:-69072479 MS.gene25940:CDS
AACCATGCTGGATTCTTTAG+AGG 0.333618 3.2:+69069766 None:intergenic
TTCCTCTATTGTTGTTTGCT+TGG 0.346471 3.2:-69072436 MS.gene25940:CDS
AATTTCAATATGGTTTGAAC+AGG 0.351021 3.2:+69070191 None:intergenic
CCTGCTTATGACTCAAGAAC+TGG 0.369319 3.2:-69074096 MS.gene25940:CDS
AGGGTCAATGTTGTTGTTCT+GGG 0.370020 3.2:-69071285 MS.gene25940:CDS
ACGAATATATGATGAGTTCT+TGG 0.377695 3.2:-69071242 MS.gene25940:CDS
ACAAGATGAGTGGGGTAGGA+AGG 0.378348 3.2:-69069843 MS.gene25940:CDS
TTCTGCTCTTGCCAGTCATA+TGG 0.398242 3.2:-69072154 MS.gene25940:CDS
CACCTGACCTGATGTATTTG+AGG 0.398910 3.2:+69070751 None:intergenic
ACACAAAGAATCTCATTAAT+GGG 0.400349 3.2:-69074248 MS.gene25940:CDS
TGTTCGACACCTTTCTTGAA+TGG 0.404698 3.2:+69071178 None:intergenic
GGGGTTCTAAATGTTGTGTC+TGG 0.406070 3.2:-69072195 MS.gene25940:CDS
ACGTTTCAAAGCAGCGGTCT+TGG 0.410812 3.2:+69071213 None:intergenic
ACTCATCATATATTCGTTCA+TGG 0.416363 3.2:+69071248 None:intergenic
GTGTATCTTATTTCCACAGA+TGG 0.419682 3.2:+69074267 None:intergenic
TCATAATTACTTGCAAGTTA+AGG 0.423202 3.2:-69069800 MS.gene25940:CDS
ATTTGTCCTGCAACTCCAAT+TGG 0.423400 3.2:+69072473 None:intergenic
TTTGATGCTGCAATTCCATT+TGG 0.426815 3.2:-69069871 MS.gene25940:CDS
TGTCAGGCTGGTCTTCCACC+AGG 0.426845 3.2:-69072216 MS.gene25940:intron
AGGGCAAATAATACACGTTA+TGG 0.429741 3.2:-69069991 MS.gene25940:CDS
ATAGCTAAGGATGAGATCTT+TGG 0.435748 3.2:-69070215 MS.gene25940:CDS
CCTCCAAGCTCTAATGTCAC+TGG 0.437862 3.2:+69071461 None:intergenic
TCTTTCCCTAGGCCTTCTCT+TGG 0.441365 3.2:-69074478 MS.gene25940:CDS
CAGCGATGAACTTGCAGCAC+TGG 0.446197 3.2:-69072745 MS.gene25940:CDS
CAAGTATTGCATGAACCAAT+TGG 0.455051 3.2:-69072488 MS.gene25940:CDS
CAAGATGAGTGGGGTAGGAA+GGG 0.462069 3.2:-69069842 MS.gene25940:CDS
AACAGTCTTCTCAAATGTTC+AGG 0.462255 3.2:-69070661 MS.gene25940:intron
TGCAGTATCTGCAGCTAGAA+AGG 0.462731 3.2:-69074025 MS.gene25940:CDS
AAATTTGTGGATGCTGCATC+AGG 0.463083 3.2:-69074225 MS.gene25940:intron
CTCATCTTGTACCCACCAAA+TGG 0.464629 3.2:+69069856 None:intergenic
GCTGCTTTGAAACGTGTTGT+TGG 0.467274 3.2:-69071205 MS.gene25940:CDS
TCTCATTAATGGGAAATTTG+TGG 0.468473 3.2:-69074238 MS.gene25940:CDS
CCAAATCAGCAACACGCAAT+AGG 0.473110 3.2:+69072778 None:intergenic
GTCGTTCTCAATCTTTCCCT+AGG 0.475184 3.2:-69074489 MS.gene25940:CDS
TTGTTGTTTGCTTGGAAAGT+TGG 0.476812 3.2:-69072428 MS.gene25940:CDS
AGTGGGGTAGGAAGGGAGAA+AGG 0.479246 3.2:-69069835 MS.gene25940:CDS
GCAAAGCCAAGAGAAGGCCT+AGG 0.481780 3.2:+69074472 None:intergenic
ATCCTCAAATACATCAGGTC+AGG 0.485591 3.2:-69070753 MS.gene25940:CDS
AGAAAATCCTCAAATACATC+AGG 0.487993 3.2:-69070758 MS.gene25940:CDS
ACTCATATTTACAACCATGC+TGG 0.490749 3.2:+69069754 None:intergenic
GATGCTGCAATTCCATTTGG+TGG 0.498830 3.2:-69069868 MS.gene25940:CDS
GGGTACAAGATGAGTGGGGT+AGG 0.501797 3.2:-69069847 MS.gene25940:CDS
GTCAGGCTGGTCTTCCACCA+GGG 0.504988 3.2:-69072215 MS.gene25940:intron
TACGTTGATGAGAGGATTGA+GGG 0.505197 3.2:-69069926 MS.gene25940:CDS
GGTCTCACAGTTCCAGCTGA+TGG 0.505479 3.2:-69072524 MS.gene25940:CDS
ACATGATAATTCCCATCAGC+TGG 0.506032 3.2:+69072512 None:intergenic
GTCTCACAGTTCCAGCTGAT+GGG 0.506203 3.2:-69072523 MS.gene25940:CDS
CCAGTTCTTGAGTCATAAGC+AGG 0.506730 3.2:+69074096 None:intergenic
TTCCAAGCAAACAACAATAG+AGG 0.517676 3.2:+69072434 None:intergenic
GACACAACATTTAGAACCCC+TGG 0.520747 3.2:+69072198 None:intergenic
GGTGACAGAATTAGCACAAA+GGG 0.523886 3.2:-69070699 MS.gene25940:CDS
TTACTTGCAAGTTAAGGCTG+TGG 0.526011 3.2:-69069794 MS.gene25940:CDS
AACTTGCAGCACTGGAAACA+TGG 0.526873 3.2:-69072737 MS.gene25940:CDS
CATTTGAGAAGACTGTTGGT+TGG 0.528656 3.2:+69070667 None:intergenic
CGTTTGCTCCGCTACTATGC+TGG 0.529584 3.2:-69072660 MS.gene25940:intron
GTTGGCGATCCATTCAAGAA+AGG 0.540648 3.2:-69071187 MS.gene25940:CDS
CTGCTTATGACTCAAGAACT+GGG 0.544949 3.2:-69074095 MS.gene25940:CDS
ATGCTGCAATTCCATTTGGT+GGG 0.547515 3.2:-69069867 MS.gene25940:CDS
CAAAGCCAAGAGAAGGCCTA+GGG 0.550284 3.2:+69074473 None:intergenic
AAATTGCAGATAGCATTCAC+TGG 0.550976 3.2:-69071539 MS.gene25940:intron
CAGTCATATGGATGTTGACA+AGG 0.551300 3.2:-69072142 MS.gene25940:intron
CGGAGCAAACGTACAAACAT+AGG 0.558011 3.2:+69072672 None:intergenic
GCACTGGAAACATGGAATAA+CGG 0.559399 3.2:-69072729 MS.gene25940:CDS
TTGGTGGGTACAAGATGAGT+GGG 0.563752 3.2:-69069852 MS.gene25940:CDS
ATACGTTGATGAGAGGATTG+AGG 0.565708 3.2:-69069927 MS.gene25940:CDS
CTTGTCAACATCCATATGAC+TGG 0.566481 3.2:+69072143 None:intergenic
ACACTGATGAAGTCATAAGA+AGG 0.567790 3.2:-69070011 MS.gene25940:CDS
GGATGACATGTCAATAGCTA+AGG 0.568937 3.2:-69070228 MS.gene25940:CDS
TGAATTAATCACACCATCTG+TGG 0.572703 3.2:-69074280 MS.gene25940:CDS
TAAGGGGTCATCTTTGGCCA+TGG 0.575433 3.2:+69073988 None:intergenic
TTGATGAGAGGATTGAGGGC+AGG 0.575683 3.2:-69069922 MS.gene25940:CDS
TTCAAGAAAGGTGTCGAACA+AGG 0.575827 3.2:-69071175 MS.gene25940:CDS
TGCAGCACAGCTATTTCAAG+AGG 0.577500 3.2:-69072336 MS.gene25940:intron
TCAGGCTGGTCTTCCACCAG+GGG 0.577991 3.2:-69072214 MS.gene25940:intron
AAGCCAGTGACATTAGAGCT+TGG 0.581427 3.2:-69071464 MS.gene25940:CDS
AGAGAAGCAAAGCCAAGAGA+AGG 0.584458 3.2:+69074466 None:intergenic
AGGTGTCGAACAAGGTCCAC+AGG 0.589809 3.2:-69071167 MS.gene25940:intron
TGCTCCTGCAGGAAAGATCA+CGG 0.590170 3.2:-69072803 MS.gene25940:intron
GCTCTAATGTCACTGGCTTG+AGG 0.590814 3.2:+69071468 None:intergenic
GCAAGAGCAGAACCAGCAGT+TGG 0.599573 3.2:+69072165 None:intergenic
AACAATAGAGGAAAGTTCCA+AGG 0.600651 3.2:+69072446 None:intergenic
GTATTACCACATGCTAATGC+AGG 0.603077 3.2:+69072404 None:intergenic
AAAGGAGTAGAAACATAAGC+AGG 0.606212 3.2:-69074326 MS.gene25940:CDS
TGAACATTTGAGAAGACTGT+TGG 0.608402 3.2:+69070663 None:intergenic
ATCACCATTTATAGTGTGTG+AGG 0.608522 3.2:-69071435 MS.gene25940:CDS
ATGAAGGAAGACACACTCAA+AGG 0.614321 3.2:-69074344 MS.gene25940:intron
CCAGTGACATTAGAGCTTGG+AGG 0.617693 3.2:-69071461 MS.gene25940:CDS
TTCACTGGATCAACTGACAC+AGG 0.618632 3.2:-69071524 MS.gene25940:CDS
TTGCAGGACAAATCATACCT+TGG 0.619823 3.2:-69072463 MS.gene25940:CDS
GGTTGGGCAGATAAAATACA+TGG 0.622562 3.2:-69072545 MS.gene25940:CDS
TTTGGTGGGTACAAGATGAG+TGG 0.624620 3.2:-69069853 MS.gene25940:CDS
CACTGATGAAGTCATAAGAA+GGG 0.626714 3.2:-69070010 MS.gene25940:CDS
GTGATTGCTCATGTTGCTGA+AGG 0.628583 3.2:-69074069 MS.gene25940:CDS
ATTTCAATATGGTTTGAACA+GGG 0.629514 3.2:+69070192 None:intergenic
AGATTGAGAACGACAAACCA+AGG 0.633614 3.2:+69074498 None:intergenic
AACAACACGTTTCAAAGCAG+CGG 0.639468 3.2:+69071207 None:intergenic
CTGTCTCACCAGCATAGTAG+CGG 0.647437 3.2:+69072652 None:intergenic
AGAGGAAATTCATACATAAG+GGG 0.654358 3.2:+69073972 None:intergenic
GTTGGTCCTGCATTAGCATG+TGG 0.670603 3.2:-69072410 MS.gene25940:CDS
CACCTCTAAAGAATCCAGCA+TGG 0.674665 3.2:-69069768 MS.gene25940:CDS
ACTGCAAATACGTTGATGAG+AGG 0.678398 3.2:-69069934 MS.gene25940:CDS
TGAGGATGCTGATGTTGACA+AGG 0.680898 3.2:-69071417 MS.gene25940:CDS
TGCTTATGACTCAAGAACTG+GGG 0.691492 3.2:-69074094 MS.gene25940:CDS
GATTGAGGGCAGGAACAGTG+TGG 0.693924 3.2:-69069912 MS.gene25940:CDS
TGGTGACAGAATTAGCACAA+AGG 0.708662 3.2:-69070700 MS.gene25940:CDS
ACAACATTTAGAACCCCTGG+TGG 0.709990 3.2:+69072201 None:intergenic
AATGCTACTCTAGAATGTGG+TGG 0.715888 3.2:-69070720 MS.gene25940:CDS
AGCAATGCTACTCTAGAATG+TGG 0.720579 3.2:-69070723 MS.gene25940:CDS
TGGTGGGTACAAGATGAGTG+GGG 0.749573 3.2:-69069851 MS.gene25940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTAATTTGTCTTTT+TGG + chr3.2:69074214-69074233 None:intergenic 10.0%
!!! ATTATTTAATTTGTCTTTTT+GGG + chr3.2:69074213-69074232 None:intergenic 10.0%
!!! TATCAACTATTTTATAATTT+AGG - chr3.2:69073909-69073928 MS.gene25940:intron 10.0%
!!! TTGTTAATTTTTTCTAATAA+TGG + chr3.2:69069892-69069911 None:intergenic 10.0%
!! ACTAAATTTACTTACTATTA+TGG - chr3.2:69071244-69071263 MS.gene25940:CDS 15.0%
!! AGATTAAGATCTTTAAATTA+AGG + chr3.2:69073730-69073749 None:intergenic 15.0%
!! AGGAAAAATAATATATCAAT+TGG - chr3.2:69072778-69072797 MS.gene25940:CDS 15.0%
!! ATGTGTTTGTAATAATAAAA+AGG + chr3.2:69071055-69071074 None:intergenic 15.0%
!! CAGAAAAAAAATACTATAAA+GGG + chr3.2:69072519-69072538 None:intergenic 15.0%
!! GATTAAGATCTTTAAATTAA+GGG + chr3.2:69073729-69073748 None:intergenic 15.0%
!! GTATATTCACAAAAAAAAAA+AGG - chr3.2:69074156-69074175 MS.gene25940:intron 15.0%
!! TGTGTTTGTAATAATAAAAA+GGG + chr3.2:69071054-69071073 None:intergenic 15.0%
!! TGTTAGTATAATTAGTATTA+TGG - chr3.2:69073346-69073365 MS.gene25940:intron 15.0%
!!! AAAGTATATTATTTTGTTCT+TGG + chr3.2:69073315-69073334 None:intergenic 15.0%
!!! ATATGATGGATATTATATAT+AGG - chr3.2:69072612-69072631 MS.gene25940:intron 15.0%
!!! ATTTATATACTACTGATTTT+TGG - chr3.2:69071689-69071708 MS.gene25940:intron 15.0%
!!! GTAATAATAATTTGAGATAA+TGG + chr3.2:69072300-69072319 None:intergenic 15.0%
!!! TTGTTATTTTGTAAATTTGA+CGG - chr3.2:69073878-69073897 MS.gene25940:intron 15.0%
!! AAAAAAGGTTAACATTAATG+AGG + chr3.2:69069916-69069935 None:intergenic 20.0%
!! ACTACACATTTATTTAACTA+TGG - chr3.2:69070359-69070378 MS.gene25940:intron 20.0%
!! ATAATATCCATCATATGTAT+AGG + chr3.2:69072608-69072627 None:intergenic 20.0%
!! ATGCTACAAAATATTATTCA+AGG + chr3.2:69073771-69073790 None:intergenic 20.0%
!! ATTAAACTCAATATATGTCA+AGG + chr3.2:69071341-69071360 None:intergenic 20.0%
!! ATTCTTCTATGAATTCTAAA+TGG + chr3.2:69070552-69070571 None:intergenic 20.0%
!! GCAGAAAAAAAATACTATAA+AGG + chr3.2:69072520-69072539 None:intergenic 20.0%
!! TAATATCCATCATATGTATA+GGG + chr3.2:69072607-69072626 None:intergenic 20.0%
!! TACATACTTGAATTTCAATA+TGG + chr3.2:69074104-69074123 None:intergenic 20.0%
!! TATAATTAGTATTATGGTGT+AGG - chr3.2:69073352-69073371 MS.gene25940:intron 20.0%
!! TGACAAGTTGTAAAATATAA+CGG - chr3.2:69070127-69070146 MS.gene25940:intron 20.0%
!! TTAAGATTAGTGATATAAGA+TGG + chr3.2:69072492-69072511 None:intergenic 20.0%
!! TTAATTAGTGTTCTTCAATT+TGG + chr3.2:69071997-69072016 None:intergenic 20.0%
!!! AATTTATTTTCCCATTTGTT+GGG + chr3.2:69070421-69070440 None:intergenic 20.0%
!!! AGATAAAGATTTTTTTACAC+TGG - chr3.2:69070584-69070603 MS.gene25940:intron 20.0%
!!! AGTTGGTTAGTATTAATTTT+AGG + chr3.2:69071144-69071163 None:intergenic 20.0%
!!! ATAGTCTTATAAATGTGAAA+AGG + chr3.2:69074129-69074148 None:intergenic 20.0%
!!! GTTGGTTAGTATTAATTTTA+GGG + chr3.2:69071143-69071162 None:intergenic 20.0%
!!! TAGTCTTATAAATGTGAAAA+GGG + chr3.2:69074128-69074147 None:intergenic 20.0%
!!! TCTAATAATGGATTAAACAT+AGG + chr3.2:69069880-69069899 None:intergenic 20.0%
!!! TGTTAACCTTTTTTTTATGA+AGG - chr3.2:69069922-69069941 MS.gene25940:CDS 20.0%
! AACATGCATATGTGTTTAAA+GGG + chr3.2:69072170-69072189 None:intergenic 25.0%
! AATTTCAATATGGTTTGAAC+AGG + chr3.2:69074094-69074113 None:intergenic 25.0%
! ACAAGTTGTAAAATATAACG+GGG - chr3.2:69070129-69070148 MS.gene25940:intron 25.0%
! ACAATTTATGATTGGTGAAT+AGG - chr3.2:69070153-69070172 MS.gene25940:intron 25.0%
! ACACAAAGAATCTCATTAAT+GGG - chr3.2:69070034-69070053 MS.gene25940:intron 25.0%
! ACACATCATGTTGTTATATT+CGG - chr3.2:69072269-69072288 MS.gene25940:intron 25.0%
! AGATATAGTTAGAGATTTGT+TGG + chr3.2:69071205-69071224 None:intergenic 25.0%
! ATTTCAATATGGTTTGAACA+GGG + chr3.2:69074093-69074112 None:intergenic 25.0%
! GAAAGAAATGAACATCTTAT+TGG + chr3.2:69071666-69071685 None:intergenic 25.0%
! GACAAGTTGTAAAATATAAC+GGG - chr3.2:69070128-69070147 MS.gene25940:intron 25.0%
! GACATATTATTAATTACCTG+TGG + chr3.2:69073134-69073153 None:intergenic 25.0%
! GTAAACGTATATTATAGAGA+CGG + chr3.2:69073397-69073416 None:intergenic 25.0%
! TACAAGCTTATGAACAATTA+GGG - chr3.2:69072978-69072997 MS.gene25940:intron 25.0%
! TACACAAAGAATCTCATTAA+TGG - chr3.2:69070033-69070052 MS.gene25940:intron 25.0%
! TCAAAAATCAAGATACGATA+CGG + chr3.2:69070784-69070803 None:intergenic 25.0%
! TCATAATTACTTGCAAGTTA+AGG - chr3.2:69074482-69074501 MS.gene25940:CDS 25.0%
! TGATATAAGATGGAATTAAG+TGG + chr3.2:69072482-69072501 None:intergenic 25.0%
! TGTCTTCCTTCATAAAAAAA+AGG + chr3.2:69069931-69069950 None:intergenic 25.0%
! TTACAAGCTTATGAACAATT+AGG - chr3.2:69072977-69072996 MS.gene25940:intron 25.0%
! TTGACGAGATTTCTTAATTA+CGG + chr3.2:69073283-69073302 None:intergenic 25.0%
!! ATGTCTTCAATTTAAAGTGT+CGG + chr3.2:69072203-69072222 None:intergenic 25.0%
!! GAAGACGAAAACATAATTTT+AGG - chr3.2:69072424-69072443 MS.gene25940:CDS 25.0%
!! TTGATTTGATGAATCCAATA+GGG - chr3.2:69074248-69074267 MS.gene25940:CDS 25.0%
!!! AATTAGTTGGAGTTTGTTAT+AGG + chr3.2:69071182-69071201 None:intergenic 25.0%
!!! AGTATTTTTTTTCTGCTGAT+GGG - chr3.2:69072524-69072543 MS.gene25940:CDS 25.0%
!!! CAATTTATTTTCCCATTTGT+TGG + chr3.2:69070422-69070441 None:intergenic 25.0%
!!! GAAATTGAGGTTCTAAATTT+AGG - chr3.2:69073812-69073831 MS.gene25940:intron 25.0%
!!! GCATAAAATCTTTGAAATTG+AGG - chr3.2:69073799-69073818 MS.gene25940:intron 25.0%
!!! TAGTATTTTTTTTCTGCTGA+TGG - chr3.2:69072523-69072542 MS.gene25940:CDS 25.0%
!!! TTTGATTTGATGAATCCAAT+AGG - chr3.2:69074247-69074266 MS.gene25940:CDS 25.0%
!!! TTTTGCTTTGTTCTTTAATC+AGG - chr3.2:69072904-69072923 MS.gene25940:intron 25.0%
!!! TTTTTGAAATTTTCCCGTAT+CGG - chr3.2:69070797-69070816 MS.gene25940:intron 25.0%
AAACAAAAGAAACCAGTCAT+AGG + chr3.2:69070678-69070697 None:intergenic 30.0%
AAATGTGTAGTGTAGTAGTA+GGG + chr3.2:69070350-69070369 None:intergenic 30.0%
AAATTGTTGTGAATCAACCT+GGG + chr3.2:69073503-69073522 None:intergenic 30.0%
AATCAACTCCTAATAACAGT+TGG + chr3.2:69072655-69072674 None:intergenic 30.0%
AATTAGTATTATGGTGTAGG+CGG - chr3.2:69073355-69073374 MS.gene25940:intron 30.0%
ACGAATATATGATGAGTTCT+TGG - chr3.2:69073040-69073059 MS.gene25940:intron 30.0%
ACTCATCATATATTCGTTCA+TGG + chr3.2:69073037-69073056 None:intergenic 30.0%
ACTGAGATTGTTCAATTAAG+GGG - chr3.2:69073850-69073869 MS.gene25940:intron 30.0%
AGAAAATCCTCAAATACATC+AGG - chr3.2:69073524-69073543 MS.gene25940:intron 30.0%
AGAGATGACTAATGATCTAA+TGG + chr3.2:69070882-69070901 None:intergenic 30.0%
AGAGGAAATTCATACATAAG+GGG + chr3.2:69070313-69070332 None:intergenic 30.0%
AGTAGTAGGGTAAAATTAGA+AGG + chr3.2:69070337-69070356 None:intergenic 30.0%
CACCATTTATTTGTGTTTGA+GGG + chr3.2:69073670-69073689 None:intergenic 30.0%
CACTAATTAAGATTCTGCAT+TGG - chr3.2:69072007-69072026 MS.gene25940:intron 30.0%
CAGAGGAAATTCATACATAA+GGG + chr3.2:69070314-69070333 None:intergenic 30.0%
CCAATCTAGTAAGATACAAT+TGG - chr3.2:69071371-69071390 MS.gene25940:intron 30.0%
CCAATTGTATCTTACTAGAT+TGG + chr3.2:69071374-69071393 None:intergenic 30.0%
GAACATGCATATGTGTTTAA+AGG + chr3.2:69072171-69072190 None:intergenic 30.0%
GACTGAGATTGTTCAATTAA+GGG - chr3.2:69073849-69073868 MS.gene25940:intron 30.0%
GGTAGTTATAACTTACAAGT+TGG + chr3.2:69071161-69071180 None:intergenic 30.0%
TAAATGTGTAGTGTAGTAGT+AGG + chr3.2:69070351-69070370 None:intergenic 30.0%
TAAGTGGAGTGAATTGAAAT+AGG + chr3.2:69072466-69072485 None:intergenic 30.0%
TACCCTCAAACACAAATAAA+TGG - chr3.2:69073665-69073684 MS.gene25940:intron 30.0%
TATATGTCAAGGATGTGTTA+TGG + chr3.2:69071330-69071349 None:intergenic 30.0%
TCACCATTTATTTGTGTTTG+AGG + chr3.2:69073671-69073690 None:intergenic 30.0%
TCTCATTAATGGGAAATTTG+TGG - chr3.2:69070044-69070063 MS.gene25940:intron 30.0%
TGACTGAGATTGTTCAATTA+AGG - chr3.2:69073848-69073867 MS.gene25940:intron 30.0%
TTGATATGACAACGTATCAT+TGG - chr3.2:69070490-69070509 MS.gene25940:intron 30.0%
! AATTATGTTTTCGTCTTCGA+TGG + chr3.2:69072422-69072441 None:intergenic 30.0%
! CTTTTTCCCTATACATATGA+TGG - chr3.2:69072598-69072617 MS.gene25940:intron 30.0%
! TTTGAGGGTATAAGAAATGT+TGG + chr3.2:69073655-69073674 None:intergenic 30.0%
!! AGAGATTTGTTGGAATTAGT+TGG + chr3.2:69071195-69071214 None:intergenic 30.0%
!! AGGAGTGTTCACAAATAATT+TGG - chr3.2:69074323-69074342 MS.gene25940:CDS 30.0%
!! GGTTAGTATTAATTTTAGGG+AGG + chr3.2:69071140-69071159 None:intergenic 30.0%
!!! TAAAATGCTTGTTTTGTGTC+AGG - chr3.2:69072050-69072069 MS.gene25940:intron 30.0%
AAAGGAGTAGAAACATAAGC+AGG - chr3.2:69069956-69069975 MS.gene25940:CDS 35.0%
AAATTGCAGATAGCATTCAC+TGG - chr3.2:69072743-69072762 MS.gene25940:CDS 35.0%
AACAAATCTTGACTAACGAG+TGG - chr3.2:69070958-69070977 MS.gene25940:intron 35.0%
AACAATAGAGGAAAGTTCCA+AGG + chr3.2:69071839-69071858 None:intergenic 35.0%
AACAGTCTTCTCAAATGTTC+AGG - chr3.2:69073621-69073640 MS.gene25940:intron 35.0%
AACGGGGTACAATTTATGAT+TGG - chr3.2:69070145-69070164 MS.gene25940:intron 35.0%
AACGTATATTATAGAGACGG+AGG + chr3.2:69073394-69073413 None:intergenic 35.0%
AATAACAGTTGGCTGCATAA+GGG + chr3.2:69072644-69072663 None:intergenic 35.0%
ACACTGATGAAGTCATAAGA+AGG - chr3.2:69074271-69074290 MS.gene25940:CDS 35.0%
ACATCCTCTCACCTATTTAA+TGG - chr3.2:69071071-69071090 MS.gene25940:intron 35.0%
ACGTATATTATAGAGACGGA+GGG + chr3.2:69073393-69073412 None:intergenic 35.0%
AGGGCAAATAATACACGTTA+TGG - chr3.2:69074291-69074310 MS.gene25940:CDS 35.0%
ATAGCTAAGGATGAGATCTT+TGG - chr3.2:69074067-69074086 MS.gene25940:CDS 35.0%
ATATCCTGTTTCCCAACAAA+TGG - chr3.2:69070407-69070426 MS.gene25940:intron 35.0%
ATCACCATTTATAGTGTGTG+AGG - chr3.2:69072847-69072866 MS.gene25940:intron 35.0%
ATCAGTCATGTTCAATCATG+TGG + chr3.2:69073454-69073473 None:intergenic 35.0%
ATCTAAGCCCTCCATTAAAT+AGG + chr3.2:69071085-69071104 None:intergenic 35.0%
ATTAGTATTATGGTGTAGGC+GGG - chr3.2:69073356-69073375 MS.gene25940:intron 35.0%
ATTCGACCTCCTATTAATTC+AGG - chr3.2:69071716-69071735 MS.gene25940:intron 35.0%
CAAATTGTTGTGAATCAACC+TGG + chr3.2:69073504-69073523 None:intergenic 35.0%
CACTGATGAAGTCATAAGAA+GGG - chr3.2:69074272-69074291 MS.gene25940:CDS 35.0%
GACATAAAACAGTTGAACCT+TGG - chr3.2:69073171-69073190 MS.gene25940:intron 35.0%
GCAGAGGAAATTCATACATA+AGG + chr3.2:69070315-69070334 None:intergenic 35.0%
GCTGCAAATAAACCAGTTAA+AGG + chr3.2:69071932-69071951 None:intergenic 35.0%
GTTACTAAAGCTGGATTGTT+AGG + chr3.2:69071022-69071041 None:intergenic 35.0%
TAATAACAGTTGGCTGCATA+AGG + chr3.2:69072645-69072664 None:intergenic 35.0%
TACACATGAGAGAAAAGAAC+CGG - chr3.2:69071105-69071124 MS.gene25940:intron 35.0%
TATCCTGTTTCCCAACAAAT+GGG - chr3.2:69070408-69070427 MS.gene25940:intron 35.0%
TCACAACTATACACTACACT+AGG + chr3.2:69070110-69070129 None:intergenic 35.0%
TCCGTATCATATCTTGTATC+CGG - chr3.2:69070840-69070859 MS.gene25940:intron 35.0%
TGAACATTTGAGAAGACTGT+TGG + chr3.2:69073622-69073641 None:intergenic 35.0%
TGAATTAATCACACCATCTG+TGG - chr3.2:69070002-69070021 MS.gene25940:CDS 35.0%
TTAAGTGACATCGATCTAGT+TGG + chr3.2:69071455-69071474 None:intergenic 35.0%
TTATGCAGCCAACTGTTATT+AGG - chr3.2:69072644-69072663 MS.gene25940:intron 35.0%
TTCCAAGCAAACAACAATAG+AGG + chr3.2:69071851-69071870 None:intergenic 35.0%
TTTGATGCTGCAATTCCATT+TGG - chr3.2:69074411-69074430 MS.gene25940:intron 35.0%
! ACCTCCTATTAATTCAGGTT+GGG - chr3.2:69071721-69071740 MS.gene25940:intron 35.0%
! CAAGTATTGCATGAACCAAT+TGG - chr3.2:69071794-69071813 MS.gene25940:intron 35.0%
! CTGTTTTATGTCGAAAACAC+TGG + chr3.2:69073163-69073182 None:intergenic 35.0%
! GTGTATCTTATTTCCACAGA+TGG + chr3.2:69070018-69070037 None:intergenic 35.0%
! TAAAGACCTTTTCACCAACA+CGG + chr3.2:69072578-69072597 None:intergenic 35.0%
!! CTAAATGTTGTGTCTGGTTT+TGG - chr3.2:69072093-69072112 MS.gene25940:intron 35.0%
!! TTCCTCTATTGTTGTTTGCT+TGG - chr3.2:69071846-69071865 MS.gene25940:intron 35.0%
!! TTGTTGTTTGCTTGGAAAGT+TGG - chr3.2:69071854-69071873 MS.gene25940:intron 35.0%
AAATCAAGATACGATACGGC+TGG + chr3.2:69070780-69070799 None:intergenic 40.0%
AAATTTGTGGATGCTGCATC+AGG - chr3.2:69070057-69070076 MS.gene25940:intron 40.0%
AACAACACGTTTCAAAGCAG+CGG + chr3.2:69073078-69073097 None:intergenic 40.0%
AACCATGCTGGATTCTTTAG+AGG + chr3.2:69074519-69074538 None:intergenic 40.0%
AATCAAGATACGATACGGCT+GGG + chr3.2:69070779-69070798 None:intergenic 40.0%
ACATGATAATTCCCATCAGC+TGG + chr3.2:69071773-69071792 None:intergenic 40.0%
AGATTGAGAACGACAAACCA+AGG + chr3.2:69069787-69069806 None:intergenic 40.0%
AGGGTAAAATTAGAAGGCAG+AGG + chr3.2:69070331-69070350 None:intergenic 40.0%
ATCCTCAAATACATCAGGTC+AGG - chr3.2:69073529-69073548 MS.gene25940:intron 40.0%
ATGAAGGAAGACACACTCAA+AGG - chr3.2:69069938-69069957 MS.gene25940:CDS 40.0%
ATGCTGCAATTCCATTTGGT+GGG - chr3.2:69074415-69074434 MS.gene25940:intron 40.0%
ATTTGTCCTGCAACTCCAAT+TGG + chr3.2:69071812-69071831 None:intergenic 40.0%
CAGTCATATGGATGTTGACA+AGG - chr3.2:69072140-69072159 MS.gene25940:intron 40.0%
CATACATAAGGGGTCATCTT+TGG + chr3.2:69070303-69070322 None:intergenic 40.0%
CATTTGAGAAGACTGTTGGT+TGG + chr3.2:69073618-69073637 None:intergenic 40.0%
CCCGGATACAAGATATGATA+CGG + chr3.2:69070844-69070863 None:intergenic 40.0%
CCGTATCATATCTTGTATCC+GGG - chr3.2:69070841-69070860 MS.gene25940:intron 40.0%
CCTCTCACCTATTTAATGGA+GGG - chr3.2:69071075-69071094 MS.gene25940:intron 40.0%
CTAACCAAACCGTGGTATAA+AGG + chr3.2:69073202-69073221 None:intergenic 40.0%
CTGCTTATGACTCAAGAACT+GGG - chr3.2:69070187-69070206 MS.gene25940:intron 40.0%
CTTGTCAACATCCATATGAC+TGG + chr3.2:69072142-69072161 None:intergenic 40.0%
GACCTCCTATTAATTCAGGT+TGG - chr3.2:69071720-69071739 MS.gene25940:intron 40.0%
GCACTGGAAACATGGAATAA+CGG - chr3.2:69071553-69071572 MS.gene25940:intron 40.0%
GCATCCTCACACACTATAAA+TGG + chr3.2:69072854-69072873 None:intergenic 40.0%
GCTGAACAAACACCTTTAAC+TGG - chr3.2:69071917-69071936 MS.gene25940:intron 40.0%
GCTTCTCTGCTTCATACATT+AGG - chr3.2:69069831-69069850 MS.gene25940:CDS 40.0%
GGATGACATGTCAATAGCTA+AGG - chr3.2:69074054-69074073 MS.gene25940:CDS 40.0%
GGGCTTTCTTAAGCTTAGAT+CGG - chr3.2:69072551-69072570 MS.gene25940:intron 40.0%
GGTGACAGAATTAGCACAAA+GGG - chr3.2:69073583-69073602 MS.gene25940:intron 40.0%
GGTTGGGCAGATAAAATACA+TGG - chr3.2:69071737-69071756 MS.gene25940:intron 40.0%
GTATTACCACATGCTAATGC+AGG + chr3.2:69071881-69071900 None:intergenic 40.0%
GTGTCAATGTTTCATAGTGC+AGG - chr3.2:69072353-69072372 MS.gene25940:CDS 40.0%
TAAACCAGTCAAACAACTCG+AGG + chr3.2:69073249-69073268 None:intergenic 40.0%
TCCTCTCACCTATTTAATGG+AGG - chr3.2:69071074-69071093 MS.gene25940:intron 40.0%
TCTAAGCTTAAGAAAGCCCA+AGG + chr3.2:69072550-69072569 None:intergenic 40.0%
TCTGCCCAACCTGAATTAAT+AGG + chr3.2:69071728-69071747 None:intergenic 40.0%
TGATGTTACAGCTGAAACTG+TGG - chr3.2:69071283-69071302 MS.gene25940:CDS 40.0%
TGCTTATGACTCAAGAACTG+GGG - chr3.2:69070188-69070207 MS.gene25940:CDS 40.0%
TGGTGACAGAATTAGCACAA+AGG - chr3.2:69073582-69073601 MS.gene25940:intron 40.0%
TGTGACGCAAGTGATTAATC+AGG - chr3.2:69074033-69074052 MS.gene25940:CDS 40.0%
TGTTCGACACCTTTCTTGAA+TGG + chr3.2:69073107-69073126 None:intergenic 40.0%
TTACTTGCAAGTTAAGGCTG+TGG - chr3.2:69074488-69074507 MS.gene25940:CDS 40.0%
TTGCAGGACAAATCATACCT+TGG - chr3.2:69071819-69071838 MS.gene25940:intron 40.0%
! AAAGACCTTTTCACCAACAC+GGG + chr3.2:69072577-69072596 None:intergenic 40.0%
! ACTGCAAATACGTTGATGAG+AGG - chr3.2:69074348-69074367 MS.gene25940:intron 40.0%
! AGGGTCAATGTTGTTGTTCT+GGG - chr3.2:69072997-69073016 MS.gene25940:intron 40.0%
! ATACGTTGATGAGAGGATTG+AGG - chr3.2:69074355-69074374 MS.gene25940:intron 40.0%
! GCTAGAAAGGCTTTTGATGA+AGG - chr3.2:69070270-69070289 MS.gene25940:intron 40.0%
! TACGTTGATGAGAGGATTGA+GGG - chr3.2:69074356-69074375 MS.gene25940:intron 40.0%
! TAGGGTCAATGTTGTTGTTC+TGG - chr3.2:69072996-69073015 MS.gene25940:intron 40.0%
! TGACGTGTCAGTTTTGCATT+CGG - chr3.2:69072325-69072344 MS.gene25940:intron 40.0%
! TTTCCCATTTGTTGGGAAAC+AGG + chr3.2:69070414-69070433 None:intergenic 40.0%
!! AATGCTACTCTAGAATGTGG+TGG - chr3.2:69073562-69073581 MS.gene25940:intron 40.0%
!! AGAGAGAGTGTTACTAAAGC+TGG + chr3.2:69071031-69071050 None:intergenic 40.0%
!! AGCAATGCTACTCTAGAATG+TGG - chr3.2:69073559-69073578 MS.gene25940:intron 40.0%
!! TTCAAGAAAGGTGTCGAACA+AGG - chr3.2:69073107-69073126 MS.gene25940:intron 40.0%
AAAGCTGGATTGTTAGGCAC+CGG + chr3.2:69071016-69071035 None:intergenic 45.0%
AAGCCAGTGACATTAGAGCT+TGG - chr3.2:69072818-69072837 MS.gene25940:intron 45.0%
AGAGAAGCAAAGCCAAGAGA+AGG + chr3.2:69069819-69069838 None:intergenic 45.0%
CACCTGACCTGATGTATTTG+AGG + chr3.2:69073534-69073553 None:intergenic 45.0%
CATGAACCAATTGGAGTTGC+AGG - chr3.2:69071803-69071822 MS.gene25940:intron 45.0%
CCAAATCAGCAACACGCAAT+AGG + chr3.2:69071507-69071526 None:intergenic 45.0%
CCAGTTCTTGAGTCATAAGC+AGG + chr3.2:69070189-69070208 None:intergenic 45.0%
CCATCAAACTAACCAAACCG+TGG + chr3.2:69073210-69073229 None:intergenic 45.0%
CCCTCCATTAAATAGGTGAG+AGG + chr3.2:69071078-69071097 None:intergenic 45.0%
CCTGCTTATGACTCAAGAAC+TGG - chr3.2:69070186-69070205 MS.gene25940:intron 45.0%
CGGAGCAAACGTACAAACAT+AGG + chr3.2:69071613-69071632 None:intergenic 45.0%
CTCATCTTGTACCCACCAAA+TGG + chr3.2:69074429-69074448 None:intergenic 45.0%
GACTTCATCAGTGTCCCTAT+TGG + chr3.2:69074265-69074284 None:intergenic 45.0%
GATGCTGCAATTCCATTTGG+TGG - chr3.2:69074414-69074433 MS.gene25940:intron 45.0%
GCCCAACCTGAATTAATAGG+AGG + chr3.2:69071725-69071744 None:intergenic 45.0%
GTCGTTCTCAATCTTTCCCT+AGG - chr3.2:69069793-69069812 MS.gene25940:CDS 45.0%
GTGATTGCTCATGTTGCTGA+AGG - chr3.2:69070213-69070232 MS.gene25940:CDS 45.0%
GTTGGCGATCCATTCAAGAA+AGG - chr3.2:69073095-69073114 MS.gene25940:intron 45.0%
TGAGGATGCTGATGTTGACA+AGG - chr3.2:69072865-69072884 MS.gene25940:intron 45.0%
TGCAGTATCTGCAGCTAGAA+AGG - chr3.2:69070257-69070276 MS.gene25940:intron 45.0%
TGGTTATGATCTGTGAAGCC+CGG + chr3.2:69070862-69070881 None:intergenic 45.0%
TTCACTGGATCAACTGACAC+AGG - chr3.2:69072758-69072777 MS.gene25940:CDS 45.0%
TTCTGCTCTTGCCAGTCATA+TGG - chr3.2:69072128-69072147 MS.gene25940:intron 45.0%
TTGGACCAGCCTTTATACCA+CGG - chr3.2:69073190-69073209 MS.gene25940:intron 45.0%
TTTAGGGAGGAGATTGTCTC+CGG + chr3.2:69071127-69071146 None:intergenic 45.0%
! AACTTGCAGCACTGGAAACA+TGG - chr3.2:69071545-69071564 MS.gene25940:intron 45.0%
! ACAACATTTAGAACCCCTGG+TGG + chr3.2:69072084-69072103 None:intergenic 45.0%
! ACACGTTATGGTCTTGCTTC+AGG - chr3.2:69074303-69074322 MS.gene25940:CDS 45.0%
! AGCACGCAGATTTTTCTCCT+TGG - chr3.2:69069767-69069786 MS.gene25940:CDS 45.0%
! AGGCTTTTGATGAAGGACCA+TGG - chr3.2:69070277-69070296 MS.gene25940:intron 45.0%
! ATGTTTTCGTCTTCGATGGC+TGG + chr3.2:69072418-69072437 None:intergenic 45.0%
! CACCTCTAAAGAATCCAGCA+TGG - chr3.2:69074514-69074533 MS.gene25940:CDS 45.0%
! CCTATTGCGTGTTGCTGATT+TGG - chr3.2:69071504-69071523 MS.gene25940:CDS 45.0%
! GACACAACATTTAGAACCCC+TGG + chr3.2:69072087-69072106 None:intergenic 45.0%
! TGCAGCACAGCTATTTCAAG+AGG - chr3.2:69071946-69071965 MS.gene25940:intron 45.0%
! TTGGTGGGTACAAGATGAGT+GGG - chr3.2:69074430-69074449 MS.gene25940:intron 45.0%
! TTTGCCTCGAGTTGTTTGAC+TGG - chr3.2:69073242-69073261 MS.gene25940:intron 45.0%
! TTTGGTGGGTACAAGATGAG+TGG - chr3.2:69074429-69074448 MS.gene25940:intron 45.0%
!! ATTTTCCCGTATCGGCGTAT+CGG - chr3.2:69070805-69070824 MS.gene25940:intron 45.0%
!! CCACGGTTTGGTTAGTTTGA+TGG - chr3.2:69073207-69073226 MS.gene25940:intron 45.0%
!! GCTGCTTTGAAACGTGTTGT+TGG - chr3.2:69073077-69073096 MS.gene25940:intron 45.0%
!! GGGGTTCTAAATGTTGTGTC+TGG - chr3.2:69072087-69072106 MS.gene25940:intron 45.0%
!! TTTTTCTGCTGATGGGCCTT+GGG - chr3.2:69072531-69072550 MS.gene25940:CDS 45.0%
!!! ATGCTTGTTTTGTGTCAGGC+TGG - chr3.2:69072054-69072073 MS.gene25940:intron 45.0%
!!! TTTTTTCTGCTGATGGGCCT+TGG - chr3.2:69072530-69072549 MS.gene25940:CDS 45.0%
!! ATATTTGAATATTAAAAAAA+TGG - chr3.2:69070704-69070723 MS.gene25940:CDS 5.0%
AAAACAGGAGGGATCTCCAC+CGG + chr3.2:69070991-69071010 None:intergenic 50.0%
ACAAGATGAGTGGGGTAGGA+AGG - chr3.2:69074439-69074458 MS.gene25940:intron 50.0%
ACGTTTCAAAGCAGCGGTCT+TGG + chr3.2:69073072-69073091 None:intergenic 50.0%
ACTAACGAGTGGATCCTCTC+CGG - chr3.2:69070969-69070988 MS.gene25940:intron 50.0%
AGACATGTCTGTGTCCATCC+TGG - chr3.2:69072217-69072236 MS.gene25940:intron 50.0%
ATGTGCTACGAGCCTATGAC+TGG - chr3.2:69070663-69070682 MS.gene25940:CDS 50.0%
CAAAGCCAAGAGAAGGCCTA+GGG + chr3.2:69069812-69069831 None:intergenic 50.0%
CAACCTGGGATTCTCAGAAC+AGG + chr3.2:69073489-69073508 None:intergenic 50.0%
CAAGATGAGTGGGGTAGGAA+GGG - chr3.2:69074440-69074459 MS.gene25940:intron 50.0%
CACTTAAGTCTTGCTCCTGC+AGG - chr3.2:69071468-69071487 MS.gene25940:CDS 50.0%
CCAAACCGTGGTATAAAGGC+TGG + chr3.2:69073198-69073217 None:intergenic 50.0%
CCAGCCTTTATACCACGGTT+TGG - chr3.2:69073195-69073214 MS.gene25940:intron 50.0%
CCAGTGACATTAGAGCTTGG+AGG - chr3.2:69072821-69072840 MS.gene25940:intron 50.0%
CTGTCTCACCAGCATAGTAG+CGG + chr3.2:69071633-69071652 None:intergenic 50.0%
GTCTCACAGTTCCAGCTGAT+GGG - chr3.2:69071759-69071778 MS.gene25940:intron 50.0%
GTTGGTCCTGCATTAGCATG+TGG - chr3.2:69071872-69071891 MS.gene25940:intron 50.0%
TAAGGGGTCATCTTTGGCCA+TGG + chr3.2:69070297-69070316 None:intergenic 50.0%
TCTTTCCCTAGGCCTTCTCT+TGG - chr3.2:69069804-69069823 MS.gene25940:CDS 50.0%
TGCTCCTGCAGGAAAGATCA+CGG - chr3.2:69071479-69071498 MS.gene25940:CDS 50.0%
TGTGTCCATCCTGGTACTTG+TGG - chr3.2:69072226-69072245 MS.gene25940:intron 50.0%
TTGATGAGAGGATTGAGGGC+AGG - chr3.2:69074360-69074379 MS.gene25940:intron 50.0%
! CCTCCAAGCTCTAATGTCAC+TGG + chr3.2:69072824-69072843 None:intergenic 50.0%
! GAGATCCCTCCTGTTTTCTC+CGG - chr3.2:69070994-69071013 MS.gene25940:intron 50.0%
! GTGGTATAAAGGCTGGTCCA+AGG + chr3.2:69073191-69073210 None:intergenic 50.0%
! TGGTGGGTACAAGATGAGTG+GGG - chr3.2:69074431-69074450 MS.gene25940:intron 50.0%
!! GCTCTAATGTCACTGGCTTG+AGG + chr3.2:69072817-69072836 None:intergenic 50.0%
!! TGTTAGGCACCGGAGAAAAC+AGG + chr3.2:69071006-69071025 None:intergenic 50.0%
!! TTGCCTGTTCTGAGAATCCC+AGG - chr3.2:69073483-69073502 MS.gene25940:intron 50.0%
!!! TCTGGTTTTGGTCCAACTGC+TGG - chr3.2:69072105-69072124 MS.gene25940:intron 50.0%
AAGCTTAGATCGGCCCGTGT+TGG - chr3.2:69072561-69072580 MS.gene25940:intron 55.0%
AGTGGGGTAGGAAGGGAGAA+AGG - chr3.2:69074447-69074466 MS.gene25940:intron 55.0%
CAGCGATGAACTTGCAGCAC+TGG - chr3.2:69071537-69071556 MS.gene25940:intron 55.0%
CGTTTGCTCCGCTACTATGC+TGG - chr3.2:69071622-69071641 MS.gene25940:intron 55.0%
GATTGAGGGCAGGAACAGTG+TGG - chr3.2:69074370-69074389 MS.gene25940:intron 55.0%
GCAAAGCCAAGAGAAGGCCT+AGG + chr3.2:69069813-69069832 None:intergenic 55.0%
GCAAGAGCAGAACCAGCAGT+TGG + chr3.2:69072120-69072139 None:intergenic 55.0%
GGATCCGTGATCTTTCCTGC+AGG + chr3.2:69071486-69071505 None:intergenic 55.0%
GGGTACAAGATGAGTGGGGT+AGG - chr3.2:69074435-69074454 MS.gene25940:intron 55.0%
GGTCTCACAGTTCCAGCTGA+TGG - chr3.2:69071758-69071777 MS.gene25940:intron 55.0%
GTCCATCCTGGTACTTGTGG+CGG - chr3.2:69072229-69072248 MS.gene25940:intron 55.0%
! ACTGCACCGATACGCCGATA+CGG + chr3.2:69070814-69070833 None:intergenic 55.0%
! ATCGGCCCGTGTTGGTGAAA+AGG - chr3.2:69072569-69072588 MS.gene25940:intron 55.0%
!! AGGCACCGGAGAAAACAGGA+GGG + chr3.2:69071002-69071021 None:intergenic 55.0%
!! AGGTGTCGAACAAGGTCCAC+AGG - chr3.2:69073115-69073134 MS.gene25940:intron 55.0%
!! TAGGCACCGGAGAAAACAGG+AGG + chr3.2:69071003-69071022 None:intergenic 55.0%
AACGAGTGGATCCTCTCCGG+TGG - chr3.2:69070972-69070991 MS.gene25940:intron 60.0%
CAGTGTCCGCCACAAGTACC+AGG + chr3.2:69072238-69072257 None:intergenic 60.0%
GTCCGCCACAAGTACCAGGA+TGG + chr3.2:69072234-69072253 None:intergenic 60.0%
! CTGCACCGATACGCCGATAC+GGG + chr3.2:69070813-69070832 None:intergenic 60.0%
!! GTCAGGCTGGTCTTCCACCA+GGG - chr3.2:69072067-69072086 MS.gene25940:intron 60.0%
!! TCAGGCTGGTCTTCCACCAG+GGG - chr3.2:69072068-69072087 MS.gene25940:intron 60.0%
!! TGTCAGGCTGGTCTTCCACC+AGG - chr3.2:69072066-69072085 MS.gene25940:intron 60.0%
AGGAGGGATCTCCACCGGAG+AGG + chr3.2:69070986-69071005 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 69069762 69074542 69069762 ID=MS.gene25940
chr3.2 mRNA 69069762 69074542 69069762 ID=MS.gene25940.t1;Parent=MS.gene25940
chr3.2 exon 69074452 69074542 69074452 ID=MS.gene25940.t1.exon1;Parent=MS.gene25940.t1
chr3.2 CDS 69074452 69074542 69074452 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
chr3.2 exon 69074226 69074360 69074226 ID=MS.gene25940.t1.exon2;Parent=MS.gene25940.t1
chr3.2 CDS 69074226 69074360 69074226 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
chr3.2 exon 69073987 69074129 69073987 ID=MS.gene25940.t1.exon3;Parent=MS.gene25940.t1
chr3.2 CDS 69073987 69074129 69073987 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
chr3.2 exon 69072661 69072814 69072661 ID=MS.gene25940.t1.exon4;Parent=MS.gene25940.t1
chr3.2 CDS 69072661 69072814 69072661 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
chr3.2 exon 69072337 69072566 69072337 ID=MS.gene25940.t1.exon5;Parent=MS.gene25940.t1
chr3.2 CDS 69072337 69072566 69072337 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
chr3.2 exon 69072143 69072232 69072143 ID=MS.gene25940.t1.exon6;Parent=MS.gene25940.t1
chr3.2 CDS 69072143 69072232 69072143 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
chr3.2 exon 69071379 69071552 69071379 ID=MS.gene25940.t1.exon7;Parent=MS.gene25940.t1
chr3.2 CDS 69071379 69071552 69071379 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
chr3.2 exon 69071168 69071305 69071168 ID=MS.gene25940.t1.exon8;Parent=MS.gene25940.t1
chr3.2 CDS 69071168 69071305 69071168 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
chr3.2 exon 69070662 69070799 69070662 ID=MS.gene25940.t1.exon9;Parent=MS.gene25940.t1
chr3.2 CDS 69070662 69070799 69070662 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
chr3.2 exon 69070188 69070249 69070188 ID=MS.gene25940.t1.exon10;Parent=MS.gene25940.t1
chr3.2 CDS 69070188 69070249 69070188 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
chr3.2 exon 69069762 69070035 69069762 ID=MS.gene25940.t1.exon11;Parent=MS.gene25940.t1
chr3.2 CDS 69069762 69070035 69069762 ID=cds.MS.gene25940.t1;Parent=MS.gene25940.t1
Gene Sequence

>MS.gene25940

ATGGCAGCACGCAGATTTTTCTCCTTGGTTTGTCGTTCTCAATCTTTCCCTAGGCCTTCTCTTGGCTTTGCTTCTCTGCTTCATACATTAGGTGACAGAAAATTATCACTAATCACCTATGTTTAATCCATTATTAGAAAAAATTAACAAGCCTCATTAATGTTAACCTTTTTTTTATGAAGGAAGACACACTCAAAGGAGTAGAAACATAAGCAGGTTGAGCACTGCTGCTGAAGTTGATGAATTAATCACACCATCTGTGGAAATAAGATACACAAAGAATCTCATTAATGGGAAATTTGTGGATGCTGCATCAGGTTCATATGATTTAATAGTATACTAATACCTAGTGTAGTGTATAGTTGTGACAAGTTGTAAAATATAACGGGGTACAATTTATGATTGGTGAATAGGAAAAACTTTTCCTGCTTATGACTCAAGAACTGGGGAAGTGATTGCTCATGTTGCTGAAGGTGATCAAGAAGATATCAATCGTGCAGTATCTGCAGCTAGAAAGGCTTTTGATGAAGGACCATGGCCAAAGATGACCCCTTATGTATGAATTTCCTCTGCCTTCTAATTTTACCCTACTACTACACTACACATTTATTTAACTATGGTTTAAAATTTTCGTAGTTACTAGAAATATCCTGTTTCCCAACAAATGGGAAAATAAATTGAGAGAAATATCTATTATTTGAAAGAGTTTAAGTTACATACTTCATTAATTGATATGACAACGTATCATTGGATACATGTGTAAACTGCAGTGTAAATAAATTAAACTCCATTTAGAATTCATAGAAGAATTTAATTCATTGTAGATAAAGATTTTTTTACACTGGCAATTGATCATTAATCATCACTCTCTTCATCGTCAATATTATTTATATTTATGTTGATGTGCTACGAGCCTATGACTGGTTTCTTTTGTTTGTTAATATATTTGAATATTAAAAAAATGGTTATAATTATATTGTACATTTAATTATATAATTTTTTTTATTAACGTATCCCAGCCGTATCGTATCTTGATTTTTGAAATTTTCCCGTATCGGCGTATCGGTGCAGTATCGTATCCGTATCATATCTTGTATCCGGGCTTCACAGATCATAACCATTAGATCATTAGTCATCTCTGACTTTAATAATAATTGCTTCTTAAGTCACAAATATGTAGTGATCATAACTAAGCTAACAAATCTTGACTAACGAGTGGATCCTCTCCGGTGGAGATCCCTCCTGTTTTCTCCGGTGCCTAACAATCCAGCTTTAGTAACACTCTCTCTCCCTTTTTATTATTACAAACACATCCTCTCACCTATTTAATGGAGGGCTTAGATTACACATGAGAGAAAAGAACCGGAGACAATCTCCTCCCTAAAATTAATACTAACCAACTTGTAAGTTATAACTACCTATAACAAACTCCAACTAATTCCAACAAATCTCTAACTATATCTAAAAGAAGCAAATATTTATACTAAATTTACTTACTATTATGGTCTTTTTAAACTGAAGTGATGTTACAGCTGAAACTGTGGTTTGTGACAAAAAAATGTAAACCATAACACATCCTTGACATATATTGAGTTTAATGACTTCTAAACCAATCTAGTAAGATACAATTGGATGTATGTGTAGAACTTTTTTCAACTATTAGTGCATAGTCATTAAACTCATATTTGAACCAACTAGATCGATGTCACTTAAGTCTTGCTCCTGCAGGAAAGATCACGGATCCTATTGCGTGTTGCTGATTTGGTTGAGAAACACAGCGATGAACTTGCAGCACTGGAAACATGGAATAACGGCAAGCTTTATGAGCAAGCTGCAAACATTGAAGTACCTATGTTTGTACGTTTGCTCCGCTACTATGCTGGTGAGACAGAACAGTGAAACCAATAAGATGTTCATTTCTTTCTTCATTTATATACTACTGATTTTTGGTGATATTCGACCTCCTATTAATTCAGGTTGGGCAGATAAAATACATGGTCTCACAGTTCCAGCTGATGGGAATTATCATGTACAAGTATTGCATGAACCAATTGGAGTTGCAGGACAAATCATACCTTGGAACTTTCCTCTATTGTTGTTTGCTTGGAAAGTTGGTCCTGCATTAGCATGTGGTAATACTGTTGTAGTAAAGACTGCTGAACAAACACCTTTAACTGGTTTATTTGCAGCACAGCTATTTCAAGAGGTAGTCATAATTGAATGTATATAGCTCCAAATTGAAGAACACTAATTAAGATTCTGCATTGGATTGCACATTGTTGTCTATCTAAAATGCTTGTTTTGTGTCAGGCTGGTCTTCCACCAGGGGTTCTAAATGTTGTGTCTGGTTTTGGTCCAACTGCTGGTTCTGCTCTTGCCAGTCATATGGATGTTGACAAGGTTAACCCTTTAAACACATATGCATGTTCTATGCAGCACCGACACTTTAAATTGAAGACATGTCTGTGTCCATCCTGGTACTTGTGGCGGACACTGACACTATATCAACACATCATGTTGTTATATTCGGTTATTCCATTATCTCAAATTATTATTACTAGTGTGACGTGTCAGTTTTGCATTCGGTGTACGTGTCAATGTTTCATAGTGCAGGTTCTTTTTTAATACATCGTTAGTTAACTTGTTTAATTAGCCAGCCATCGAAGACGAAAACATAATTTTAGGTCTTTCGACTCATCAGCCTATTTCAATTCACTCCACTTAATTCCATCTTATATCACTAATCTTAACATACCCTTTATAGTATTTTTTTTCTGCTGATGGGCCTTGGGCTTTCTTAAGCTTAGATCGGCCCGTGTTGGTGAAAAGGTCTTTACTTTTTCCCTATACATATGATGGATATTATATATAGGAACAATCCCTTATGCAGCCAACTGTTATTAGGAGTTGATTTTAATTTTCAGCACATAATGTTTGAGAAAAAGTTAAACATGTTGATTAGTAATGTATAAATTCTATTGAAATTGCAGATAGCATTCACTGGATCAACTGACACAGGAAAAATAATATATCAATTGGCTGCAAAAAGCAACCTCAAGCCAGTGACATTAGAGCTTGGAGGAAAATCACCATTTATAGTGTGTGAGGATGCTGATGTTGACAAGGCTGTTGAACTTGCACATTTTGCTTTGTTCTTTAATCAGGTTGATTTTGATTTCAAATAATTCTCTAAGTTGCACATGTGCATAAGATATTTACAAGCTTATGAACAATTAGGGTCAATGTTGTTGTTCTGGGTCGCGTACTTATGTCCATGAACGAATATATGATGAGTTCTTGGAGAAAGCCAAGACCGCTGCTTTGAAACGTGTTGTTGGCGATCCATTCAAGAAAGGTGTCGAACAAGGTCCACAGGTAATTAATAATATGTCTAATAACCAGTGTTTTCGACATAAAACAGTTGAACCTTGGACCAGCCTTTATACCACGGTTTGGTTAGTTTGATGGTTTAATTCTAATTTTGCCTCGAGTTGTTTGACTGGTTTAAAGCAGTTGAACCGTAATTAAGAAATCTCGTCAAATTTGATATCCAAGAACAAAATAATATACTTTTAAGAATAACATGTTAGTATAATTAGTATTATGGTGTAGGCGGGATTGAATCTCTCCCTCCGTCTCTATAATATACGTTTACAAGCTATTGTGTGCGTGCTACTCAAACATGATATCCACATGATTGAACATGACTGATATCATGTGCTTGCCTGTTCTGAGAATCCCAGGTTGATTCACAACAATTTGAGAAAATCCTCAAATACATCAGGTCAGGTGTTGAAAGCAATGCTACTCTAGAATGTGGTGGTGACAGAATTAGCACAAAGGGCTTCTTTGTCCAACCAACAGTCTTCTCAAATGTTCAGGTGATCATGCCAACATTTCTTATACCCTCAAACACAAATAAATGGTGATTTAGTCTTTTGAATTTACAAAATAGTAAATCAGTCCCTTAATTTAAAGATCTTAATCTATTTCGTCTATATATTCACCTTGAATAATATTTTGTAGCATCTAGACAAGCATAAAATCTTTGAAATTGAGGTTCTAAATTTAGGAAAATGATTATGATGACTGAGATTGTTCAATTAAGGGGCTAAATTGTTATTTTGTAAATTTGACGGACTAAATTTATCAACTATTTTATAATTTAGGAAAATGATTATGATGACTGAGATTGTTCAATTAAGGGACTAAATTGTTATTTTGTAAATTTGACGGACTAAATTTATCAACTATTTTATTTTGAAATGATATGTGACGCAAGTGATTAATCAGGATGACATGTCAATAGCTAAGGATGAGATCTTTGGCCCTGTTCAAACCATATTGAAATTCAAGTATGTATCCCTTTTCACATTTATAAGACTATAGTACTAGTATATTCACAAAAAAAAAAAGGACTAGTACTAGTACTAACAAATCTGTTTGAGCCCAAAAAGACAAATTAAATAATTGAGACTAATCTTATTTGATTTGATGAATCCAATAGGGACACTGATGAAGTCATAAGAAGGGCAAATAATACACGTTATGGTCTTGCTTCAGGAGTGTTCACAAATAATTTGGACACTGCAAATACGTTGATGAGAGGATTGAGGGCAGGAACAGTGTGGATTAATTGCTTTGATGTGTTTGATGCTGCAATTCCATTTGGTGGGTACAAGATGAGTGGGGTAGGAAGGGAGAAAGGTATATATAGTCTTCATAATTACTTGCAAGTTAAGGCTGTGGTTACACCTCTAAAGAATCCAGCATGGTTGTAA
Protein sequence

>MS.gene25940.t1

MAARRFFSLVCRSQSFPRPSLGFASLLHTLGRHTQRSRNISRLSTAAEVDELITPSVEIRYTKNLINGKFVDAASGKTFPAYDSRTGEVIAHVAEGDQEDINRAVSAARKAFDEGPWPKMTPYERSRILLRVADLVEKHSDELAALETWNNGKLYEQAANIEVPMFVRLLRYYAGWADKIHGLTVPADGNYHVQVLHEPIGVAGQIIPWNFPLLLFAWKVGPALACGNTVVVKTAEQTPLTGLFAAQLFQEAGLPPGVLNVVSGFGPTAGSALASHMDVDKIAFTGSTDTGKIIYQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCSGSRTYVHERIYDEFLEKAKTAALKRVVGDPFKKGVEQGPQVDSQQFEKILKYIRSGVESNATLECGGDRISTKGFFVQPTVFSNVQDDMSIAKDEIFGPVQTILKFKDTDEVIRRANNTRYGLASGVFTNNLDTANTLMRGLRAGTVWINCFDVFDAAIPFGGYKMSGVGREKGIYSLHNYLQVKAVVTPLKNPAWL