Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050828.t1 | XP_003626081.1 | 96.7 | 429 | 14 | 0 | 1 | 429 | 1 | 429 | 8.00E-229 | 802.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050828.t1 | Q5FW14 | 26.0 | 385 | 253 | 11 | 14 | 377 | 9 | 382 | 8.9e-19 | 96.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050828.t1 | G7KUN7 | 96.7 | 429 | 14 | 0 | 1 | 429 | 1 | 429 | 5.8e-229 | 802.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050828 | MS.gene051744 | 0.816589 | 5.12E-52 | -1.69E-46 |
| MS.gene050828 | MS.gene053226 | 0.806192 | 9.27E-50 | -1.69E-46 |
| MS.gene050828 | MS.gene057102 | 0.800022 | 1.75E-48 | -1.69E-46 |
| MS.gene050828 | MS.gene060365 | 0.800838 | 1.19E-48 | -1.69E-46 |
| MS.gene050828 | MS.gene065069 | 0.802749 | 4.84E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene066782 | 0.80096 | 1.13E-48 | -1.69E-46 |
| MS.gene050828 | MS.gene070301 | 0.807055 | 6.09E-50 | -1.69E-46 |
| MS.gene050828 | MS.gene071034 | 0.801953 | 7.06E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene072280 | 0.802473 | 5.52E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene072634 | 0.96885 | 2.88E-129 | -1.69E-46 |
| MS.gene050828 | MS.gene21536 | 0.800464 | 1.42E-48 | -1.69E-46 |
| MS.gene050828 | MS.gene24623 | 0.802522 | 5.39E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene25991 | 0.818113 | 2.32E-52 | -1.69E-46 |
| MS.gene050828 | MS.gene27516 | 0.801622 | 8.26E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene28625 | 0.833049 | 6.67E-56 | -1.69E-46 |
| MS.gene050828 | MS.gene33650 | 0.828667 | 7.92E-55 | -1.69E-46 |
| MS.gene050828 | MS.gene37570 | 0.801481 | 8.82E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene40709 | 0.821273 | 4.41E-53 | -1.69E-46 |
| MS.gene050828 | MS.gene40711 | 0.813947 | 1.98E-51 | -1.69E-46 |
| MS.gene050828 | MS.gene44256 | 0.803574 | 3.27E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene55818 | 0.821837 | 3.27E-53 | -1.69E-46 |
| MS.gene050828 | MS.gene63988 | 0.809389 | 1.94E-50 | -1.69E-46 |
| MS.gene050828 | MS.gene68198 | 0.805998 | 1.02E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene70656 | 0.827495 | 1.52E-54 | -1.69E-46 |
| MS.gene050828 | MS.gene74956 | 0.80043 | 1.45E-48 | -1.69E-46 |
| MS.gene050828 | MS.gene76244 | 0.807318 | 5.36E-50 | -1.69E-46 |
| MS.gene050828 | MS.gene87673 | 0.803097 | 4.10E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene93155 | 0.801712 | 7.91E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene99894 | 0.803433 | 3.49E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050828.t1 | MTR_7g110820 | 96.737 | 429 | 14 | 0 | 1 | 429 | 1 | 429 | 0.0 | 852 |
| MS.gene050828.t1 | MTR_7g110820 | 96.530 | 317 | 11 | 0 | 113 | 429 | 1 | 317 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050828.t1 | AT3G62080 | 58.892 | 343 | 140 | 1 | 5 | 346 | 6 | 348 | 4.66e-150 | 432 |
| MS.gene050828.t1 | AT3G62080 | 58.892 | 343 | 140 | 1 | 5 | 346 | 45 | 387 | 1.15e-149 | 433 |
Find 0 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACAAATTTC+AGG | - | 50583:35044-35063 | None:intergenic | 10.0% |
| !! | ATAGTAATAATTAGAAAAAA+TGG | - | 50583:36321-36340 | None:intergenic | 10.0% |
| !! | ACAGAATATAATAAACTTAA+TGG | + | 50583:37727-37746 | MS.gene050828:intron | 15.0% |
| !! | TTTATTATCTTATACATTTC+AGG | + | 50583:36600-36619 | MS.gene050828:intron | 15.0% |
| !! | TTTCTAATTATTACTATTGT+AGG | + | 50583:36324-36343 | MS.gene050828:intron | 15.0% |
| !!! | TACTTTTAAAAATTATTCTG+CGG | + | 50583:36574-36593 | MS.gene050828:intron | 15.0% |
| !!! | TTTTTTAGGTTAAAAATGAT+TGG | + | 50583:35060-35079 | MS.gene050828:intron | 15.0% |
| !! | AACAAAAACAAAAGAAGAAA+AGG | - | 50583:35847-35866 | None:intergenic | 20.0% |
| !! | ATGAAAATGAAAAGAAAAAG+AGG | - | 50583:35016-35035 | None:intergenic | 20.0% |
| !! | ATTTACCAACATATATTTCA+TGG | + | 50583:35937-35956 | MS.gene050828:intron | 20.0% |
| !! | CTAAATAGGATAAATATGTT+AGG | - | 50583:38036-38055 | None:intergenic | 20.0% |
| !! | CTAACATATTTATCCTATTT+AGG | + | 50583:38034-38053 | MS.gene050828:intron | 20.0% |
| !! | TAACATATAATAATCTACTG+TGG | - | 50583:37597-37616 | None:intergenic | 20.0% |
| !! | TAGAATTACTAAACAATTTG+AGG | - | 50583:36643-36662 | None:intergenic | 20.0% |
| !! | TCAAAATTGACCAATTATTT+GGG | - | 50583:36217-36236 | None:intergenic | 20.0% |
| !! | TCTTCAAATATATCACATTT+AGG | + | 50583:37135-37154 | MS.gene050828:intron | 20.0% |
| !! | TGAAAATGAAAAGAAAAAGA+GGG | - | 50583:35015-35034 | None:intergenic | 20.0% |
| !! | TGTTTAGTATTCTATCATTT+AGG | + | 50583:37102-37121 | MS.gene050828:intron | 20.0% |
| !! | TTCAAAATTGACCAATTATT+TGG | - | 50583:36218-36237 | None:intergenic | 20.0% |
| !!! | ACTTTTAAAAATTATTCTGC+GGG | + | 50583:36575-36594 | MS.gene050828:intron | 20.0% |
| !!! | ATTTCCATTTTTAATTTGAC+AGG | + | 50583:37309-37328 | MS.gene050828:intron | 20.0% |
| !!! | CAGGCATTTATTTATTTTTT+TGG | + | 50583:38515-38534 | MS.gene050828:intron | 20.0% |
| !!! | CAGTTTTTTAACAAGTTTAA+TGG | - | 50583:35459-35478 | None:intergenic | 20.0% |
| !!! | TAGGATTTGTATTTTTAAAC+AGG | + | 50583:38496-38515 | MS.gene050828:intron | 20.0% |
| !!! | TCATAGTTTGGAATTATAAT+AGG | - | 50583:36248-36267 | None:intergenic | 20.0% |
| !!! | TTTCCATTTTTAATTTGACA+GGG | + | 50583:37310-37329 | MS.gene050828:intron | 20.0% |
| !!! | TTTTGCTGAAATCAATAATT+AGG | + | 50583:38477-38496 | MS.gene050828:intron | 20.0% |
| !!! | TTTTTTAACAAGTTTAATGG+AGG | - | 50583:35456-35475 | None:intergenic | 20.0% |
| ! | AAAAGAAAAAGAGGGAAAAT+TGG | - | 50583:35007-35026 | None:intergenic | 25.0% |
| ! | AATTCACTTCTTTGCTTTAT+AGG | + | 50583:35222-35241 | MS.gene050828:intron | 25.0% |
| ! | AATTTCAAATGAACTCTACA+AGG | - | 50583:35973-35992 | None:intergenic | 25.0% |
| ! | ACAAAAAACAAAACACGAAA+AGG | - | 50583:35609-35628 | None:intergenic | 25.0% |
| ! | AGTATAACATCATATGAATG+AGG | - | 50583:37758-37777 | None:intergenic | 25.0% |
| ! | ATAAAGCAAAGAAGTGAATT+TGG | - | 50583:35222-35241 | None:intergenic | 25.0% |
| ! | ATGATAGAATACTAAACAAC+TGG | - | 50583:37100-37119 | None:intergenic | 25.0% |
| ! | ATTTCAAATGAACTCTACAA+GGG | - | 50583:35972-35991 | None:intergenic | 25.0% |
| ! | ATTTCTCCAGAAAATGAAAT+TGG | - | 50583:34909-34928 | None:intergenic | 25.0% |
| ! | CAAAAAACAAAACACGAAAA+GGG | - | 50583:35608-35627 | None:intergenic | 25.0% |
| ! | CAAAATTGACCAATTATTTG+GGG | - | 50583:36216-36235 | None:intergenic | 25.0% |
| ! | CAAATAACTTCTAACATTTC+TGG | + | 50583:37176-37195 | MS.gene050828:intron | 25.0% |
| ! | GCATGCATAAAATAAACAAA+AGG | - | 50583:35884-35903 | None:intergenic | 25.0% |
| ! | TAAAGCAAAGAAGTGAATTT+GGG | - | 50583:35221-35240 | None:intergenic | 25.0% |
| ! | TACTTGTATATGTATCATGA+AGG | + | 50583:37482-37501 | MS.gene050828:intron | 25.0% |
| ! | TATCACCAAATCTTAATTAG+TGG | - | 50583:37801-37820 | None:intergenic | 25.0% |
| ! | TATGAGGAGAAAATGAAAAT+GGG | - | 50583:34951-34970 | None:intergenic | 25.0% |
| ! | TCAAATTGATCAGTTTACAT+TGG | + | 50583:38245-38264 | MS.gene050828:intron | 25.0% |
| ! | TGTAAAAGATTTCATAGCAA+AGG | + | 50583:34805-34824 | MS.gene050828:CDS | 25.0% |
| ! | TGTTGGAATCAACTATTTAA+CGG | + | 50583:35364-35383 | MS.gene050828:intron | 25.0% |
| ! | TTATGAGGAGAAAATGAAAA+TGG | - | 50583:34952-34971 | None:intergenic | 25.0% |
| ! | TTGAATTGTCATTGAATGTT+CGG | + | 50583:35402-35421 | MS.gene050828:intron | 25.0% |
| ! | TTTAGTAATTCTACAGCATA+AGG | + | 50583:36650-36669 | MS.gene050828:intron | 25.0% |
| ! | TTTCTCCAGAAAATGAAATT+GGG | - | 50583:34908-34927 | None:intergenic | 25.0% |
| !! | AAACTACTAGTTTACACTAA+CGG | - | 50583:35343-35362 | None:intergenic | 25.0% |
| !! | ATTTCTGTTTCTTCATATGT+AGG | + | 50583:36851-36870 | MS.gene050828:intron | 25.0% |
| !! | TACATTTCAGGTATTTAAGT+TGG | + | 50583:36612-36631 | MS.gene050828:intron | 25.0% |
| !! | TGTAAACTAGTAGTTTTTGT+TGG | + | 50583:35347-35366 | MS.gene050828:intron | 25.0% |
| !! | TTGAAATTTTCATGGAAGAA+TGG | + | 50583:35985-36004 | MS.gene050828:intron | 25.0% |
| !! | TTGTTTGATAACTTGCAATT+TGG | + | 50583:36074-36093 | MS.gene050828:intron | 25.0% |
| !!! | AAAAATGATTGGTTTAATCG+AGG | + | 50583:35071-35090 | MS.gene050828:CDS | 25.0% |
| !!! | AAGTCGTTTTAACACATAAA+AGG | + | 50583:37656-37675 | MS.gene050828:intron | 25.0% |
| !!! | GAGTTCATTTGAAATTTTCA+TGG | + | 50583:35977-35996 | MS.gene050828:intron | 25.0% |
| !!! | TGAGTAATTGTGTTTTGAAT+TGG | - | 50583:37682-37701 | None:intergenic | 25.0% |
| !!! | TTCTAACATTTCTGGTAAAT+TGG | + | 50583:37184-37203 | MS.gene050828:intron | 25.0% |
| AAAATTGGAAAAACCCTAGT+AGG | - | 50583:34992-35011 | None:intergenic | 30.0% | |
| AACAATTAGATGTGATTGAC+AGG | + | 50583:37428-37447 | MS.gene050828:CDS | 30.0% | |
| AACACGTAAGAATATTGACA+TGG | - | 50583:36013-36032 | None:intergenic | 30.0% | |
| AAGAAATTTCAGGAGATATG+TGG | + | 50583:36942-36961 | MS.gene050828:CDS | 30.0% | |
| AATCTACTGTGGAATAAGAA+AGG | - | 50583:37586-37605 | None:intergenic | 30.0% | |
| ACACCCTGTCAAATTAAAAA+TGG | - | 50583:37316-37335 | None:intergenic | 30.0% | |
| ACTTTCTATCTGAAAGTTGT+AGG | - | 50583:36169-36188 | None:intergenic | 30.0% | |
| AGAAAAGGTCTCGAAATAAA+TGG | - | 50583:35832-35851 | None:intergenic | 30.0% | |
| AGGGAAAATGTTTCAGTTTA+TGG | - | 50583:37566-37585 | None:intergenic | 30.0% | |
| AGTAATCATTCTTTGTTAGC+AGG | + | 50583:38293-38312 | MS.gene050828:intron | 30.0% | |
| ATATCCAAAATCCTACTAAG+AGG | - | 50583:37636-37655 | None:intergenic | 30.0% | |
| ATCTACTGTGGAATAAGAAA+GGG | - | 50583:37585-37604 | None:intergenic | 30.0% | |
| ATCTGAATTACAAATGCACA+AGG | - | 50583:35919-35938 | None:intergenic | 30.0% | |
| ATTATATGTTATGCAAGTGC+CGG | + | 50583:37606-37625 | MS.gene050828:intron | 30.0% | |
| CAAAGAAAATAAGATAAGCG+TGG | + | 50583:38350-38369 | MS.gene050828:CDS | 30.0% | |
| CAATTACATACATTTCATGC+TGG | + | 50583:35178-35197 | MS.gene050828:intron | 30.0% | |
| CAGTCTCTAATGTATAATGA+AGG | + | 50583:35649-35668 | MS.gene050828:intron | 30.0% | |
| CATTACGATGAAGAAATTTC+AGG | + | 50583:36932-36951 | MS.gene050828:CDS | 30.0% | |
| CTTCATTATACATTAGAGAC+TGG | - | 50583:35651-35670 | None:intergenic | 30.0% | |
| GAAAATGTTTCAGTTTATGG+AGG | - | 50583:37563-37582 | None:intergenic | 30.0% | |
| TAAAAAACTGACAGAATGAC+AGG | + | 50583:35469-35488 | MS.gene050828:intron | 30.0% | |
| TACTCAAACAAAGGAAAAGT+TGG | - | 50583:36797-36816 | None:intergenic | 30.0% | |
| TAGTAAACTCATGTTCTTAG+AGG | - | 50583:37845-37864 | None:intergenic | 30.0% | |
| TATCCAAAATCCTACTAAGA+GGG | - | 50583:37635-37654 | None:intergenic | 30.0% | |
| TATCTGAAAGTTGTAGGTAA+GGG | - | 50583:36163-36182 | None:intergenic | 30.0% | |
| TCAACTATTTAACGGTTATG+TGG | + | 50583:35372-35391 | MS.gene050828:intron | 30.0% | |
| TGATAATCGTTAATACTGAC+AGG | + | 50583:37216-37235 | MS.gene050828:intron | 30.0% | |
| TGCTAACAAAGAATGATTAC+TGG | - | 50583:38294-38313 | None:intergenic | 30.0% | |
| TTTACAAATTTATTCACGCG+AGG | + | 50583:37894-37913 | MS.gene050828:intron | 30.0% | |
| TTTCTTCATCGTAATGATAC+AGG | - | 50583:36928-36947 | None:intergenic | 30.0% | |
| ! | AGAGGACTAAGTCTATATTT+TGG | + | 50583:35267-35286 | MS.gene050828:intron | 30.0% |
| ! | ATGAACATTTTTCTCTACTC+TGG | - | 50583:38143-38162 | None:intergenic | 30.0% |
| ! | CTGATTTTCTTGACCTAAAT+AGG | - | 50583:38050-38069 | None:intergenic | 30.0% |
| ! | GTAAAATAGTTCTACACTGA+CGG | + | 50583:35426-35445 | MS.gene050828:intron | 30.0% |
| ! | TGAACATTTTTCTCTACTCT+GGG | - | 50583:38142-38161 | None:intergenic | 30.0% |
| !! | ATCACTTTTGAATAGAGTAG+AGG | + | 50583:38161-38180 | MS.gene050828:CDS | 30.0% |
| !! | TGCAAACTTAATTAACTTGC+TGG | - | 50583:36758-36777 | None:intergenic | 30.0% |
| !! | TTAAGATTTGGTGATAGTGT+TGG | + | 50583:37805-37824 | MS.gene050828:intron | 30.0% |
| !! | TTATTTTATGCATGCGTGTT+TGG | + | 50583:35889-35908 | MS.gene050828:intron | 30.0% |
| AAATTTCAGGAGATATGTGG+AGG | + | 50583:36945-36964 | MS.gene050828:CDS | 35.0% | |
| AACATCTATCAGAAAGTCAC+TGG | + | 50583:36895-36914 | MS.gene050828:CDS | 35.0% | |
| AACATTACAGAAGCTTCATC+CGG | - | 50583:36972-36991 | None:intergenic | 35.0% | |
| AACCCTGTGCTTCAAATAAA+GGG | - | 50583:36552-36571 | None:intergenic | 35.0% | |
| AATTTCAGGAGATATGTGGA+GGG | + | 50583:36946-36965 | MS.gene050828:CDS | 35.0% | |
| AGCATAAGGATTACGTACAT+CGG | + | 50583:36664-36683 | MS.gene050828:intron | 35.0% | |
| AGTGTTTGTGCTTCATAGTT+TGG | - | 50583:36260-36279 | None:intergenic | 35.0% | |
| ATGAAGCTTCTGTAATGTTG+AGG | + | 50583:36973-36992 | MS.gene050828:CDS | 35.0% | |
| CAACATATATTTCATGGTCC+CGG | + | 50583:35943-35962 | MS.gene050828:intron | 35.0% | |
| CAACCTTAAGCATAGGAATT+AGG | - | 50583:35801-35820 | None:intergenic | 35.0% | |
| CAATGATAATTCCTCCCAAA+GGG | - | 50583:37248-37267 | None:intergenic | 35.0% | |
| CATCTAGCATACTCAAACAA+AGG | - | 50583:36806-36825 | None:intergenic | 35.0% | |
| CCTCTACAAATTCGTTCTTA+AGG | - | 50583:37037-37056 | None:intergenic | 35.0% | |
| CCTTAAGAACGAATTTGTAG+AGG | + | 50583:37034-37053 | MS.gene050828:CDS | 35.0% | |
| CGTGACCACTAATTAAGATT+TGG | + | 50583:37793-37812 | MS.gene050828:intron | 35.0% | |
| CTATCTGAAAGTTGTAGGTA+AGG | - | 50583:36164-36183 | None:intergenic | 35.0% | |
| GATAGTACACCCCAAATAAT+TGG | + | 50583:36204-36223 | MS.gene050828:intron | 35.0% | |
| GTGATGTTCTGTACTTGATT+TGG | + | 50583:37386-37405 | MS.gene050828:CDS | 35.0% | |
| TAATTAAGTTTGCAGCTTGC+AGG | + | 50583:36764-36783 | MS.gene050828:intron | 35.0% | |
| TATCACATTTAGGTAGCAGT+TGG | + | 50583:37145-37164 | MS.gene050828:intron | 35.0% | |
| TATCTGTGTTAGTGCTTCAT+AGG | + | 50583:36360-36379 | MS.gene050828:intron | 35.0% | |
| TCAATGATAATTCCTCCCAA+AGG | - | 50583:37249-37268 | None:intergenic | 35.0% | |
| TCGTTGATATCTGTGTATGA+TGG | - | 50583:38555-38574 | None:intergenic | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | 50583:36452-36471 | MS.gene050828:intron | 35.0% | |
| TGAAGCACAAACACTTCATA+TGG | + | 50583:36265-36284 | MS.gene050828:intron | 35.0% | |
| TGCATGAAAGCAAACATGAA+CGG | - | 50583:36726-36745 | None:intergenic | 35.0% | |
| TTCATAGGTTTCATGTGAAC+TGG | + | 50583:36375-36394 | MS.gene050828:intron | 35.0% | |
| TTGCTAACAACCTTAAGCAT+AGG | - | 50583:35808-35827 | None:intergenic | 35.0% | |
| TTTGCTTTATAGGCTGTGTT+TGG | + | 50583:35232-35251 | MS.gene050828:intron | 35.0% | |
| ! | AATAGAGTAGAGGAAGTACA+TGG | + | 50583:38171-38190 | MS.gene050828:CDS | 35.0% |
| ! | AATGAAATTGGGTTGCCAAT+CGG | - | 50583:34897-34916 | None:intergenic | 35.0% |
| ! | AGCTGGTCTGATTATTAAGT+TGG | - | 50583:35746-35765 | None:intergenic | 35.0% |
| ! | CATGTTTGAATGCAGCATTT+TGG | - | 50583:35585-35604 | None:intergenic | 35.0% |
| ! | TAATGTTGAGGTATCTGTCA+GGG | + | 50583:36985-37004 | MS.gene050828:CDS | 35.0% |
| ! | TTTGAATGCAGCATTTTGGA+GGG | - | 50583:35581-35600 | None:intergenic | 35.0% |
| !! | AAAAGCTTTGAATCGAGCAA+CGG | - | 50583:34861-34880 | None:intergenic | 35.0% |
| !! | AATGATTGGTTTAATCGAGG+AGG | + | 50583:35074-35093 | MS.gene050828:CDS | 35.0% |
| !! | ACTGATTTGATTCTTATGCC+TGG | + | 50583:37274-37293 | MS.gene050828:intron | 35.0% |
| !!! | GGTCATTTTTCTGACTAGTT+GGG | - | 50583:35725-35744 | None:intergenic | 35.0% |
| !!! | TGGTCATTTTTCTGACTAGT+TGG | - | 50583:35726-35745 | None:intergenic | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | 50583:36453-36472 | None:intergenic | 35.0% |
| AAACTGACAGAATGACAGGA+TGG | + | 50583:35473-35492 | MS.gene050828:intron | 40.0% | |
| AAGACAACTACCAGTGAAGA+AGG | + | 50583:38648-38667 | MS.gene050828:CDS | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | 50583:36446-36465 | MS.gene050828:intron | 40.0% | |
| ACATTTAGGTAGCAGTTGGT+GGG | + | 50583:37149-37168 | MS.gene050828:intron | 40.0% | |
| AGTACATCGTCGATACACAA+AGG | - | 50583:35107-35126 | None:intergenic | 40.0% | |
| ATAACTTCGTCGTTCCAATC+GGG | - | 50583:34836-34855 | None:intergenic | 40.0% | |
| ATGTTCTTAGAGGATCACGT+GGG | - | 50583:37835-37854 | None:intergenic | 40.0% | |
| CAACCCTGTGCTTCAAATAA+AGG | - | 50583:36553-36572 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | 50583:36447-36466 | MS.gene050828:intron | 40.0% | |
| CGGGACCATGAAATATATGT+TGG | - | 50583:35945-35964 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | 50583:36478-36497 | MS.gene050828:intron | 40.0% | |
| GATAACTTCGTCGTTCCAAT+CGG | - | 50583:34837-34856 | None:intergenic | 40.0% | |
| GATTCTTCAGCCATGATATC+TGG | - | 50583:35772-35791 | None:intergenic | 40.0% | |
| GGAAATAAGACAAGCAATCC+AGG | - | 50583:37295-37314 | None:intergenic | 40.0% | |
| GGTCCTAATTCCTATGCTTA+AGG | + | 50583:35795-35814 | MS.gene050828:CDS | 40.0% | |
| GTACATCGTCGATACACAAA+GGG | - | 50583:35106-35125 | None:intergenic | 40.0% | |
| TACATCGTCGATACACAAAG+GGG | - | 50583:35105-35124 | None:intergenic | 40.0% | |
| TAGGTCAAGAAAATCAGCAG+TGG | + | 50583:38053-38072 | MS.gene050828:intron | 40.0% | |
| TATCATGGCTGAAGAATCTG+TGG | + | 50583:35774-35793 | MS.gene050828:CDS | 40.0% | |
| TCAAATGAACTCTACAAGGG+TGG | - | 50583:35969-35988 | None:intergenic | 40.0% | |
| TCTCCTCATAAAACCTTCTC+AGG | + | 50583:34961-34980 | MS.gene050828:CDS | 40.0% | |
| TGAAGAAGGAACTGCAACTT+TGG | + | 50583:38662-38681 | MS.gene050828:CDS | 40.0% | |
| TGATGCAGAGTCAACGAAAA+CGG | + | 50583:38203-38222 | MS.gene050828:CDS | 40.0% | |
| TGTTTGCTTTCATGCAATGC+TGG | + | 50583:36730-36749 | MS.gene050828:intron | 40.0% | |
| TTACGTGTTGTACACAGTTG+AGG | + | 50583:36024-36043 | MS.gene050828:intron | 40.0% | |
| TTCGCAGAAGGAAGTTGAAA+AGG | + | 50583:38416-38435 | MS.gene050828:CDS | 40.0% | |
| TTCTCAGGTACTACCTACTA+GGG | + | 50583:34976-34995 | MS.gene050828:intron | 40.0% | |
| ! | AAGCCCTCTTAGTAGGATTT+TGG | + | 50583:37629-37648 | MS.gene050828:intron | 40.0% |
| ! | CTTTATTTGAAGCACAGGGT+TGG | + | 50583:36551-36570 | MS.gene050828:intron | 40.0% |
| ! | GGCAACCCAATTTCATTTTC+TGG | + | 50583:34900-34919 | MS.gene050828:CDS | 40.0% |
| ! | GTAATGTTGAGGTATCTGTC+AGG | + | 50583:36984-37003 | MS.gene050828:CDS | 40.0% |
| ! | GTTTGAATGCAGCATTTTGG+AGG | - | 50583:35582-35601 | None:intergenic | 40.0% |
| ! | TCACTGGTAGTTGTCTTTTC+CGG | - | 50583:38645-38664 | None:intergenic | 40.0% |
| ! | TGCCCTTTATTTGAAGCACA+GGG | + | 50583:36547-36566 | MS.gene050828:intron | 40.0% |
| ! | TTGCCCTTTATTTGAAGCAC+AGG | + | 50583:36546-36565 | MS.gene050828:intron | 40.0% |
| ! | TTTGTGTATCGACGATGTAC+TGG | + | 50583:35106-35125 | MS.gene050828:CDS | 40.0% |
| ! | TTTTCACGGTGTATGATACC+TGG | + | 50583:36691-36710 | MS.gene050828:intron | 40.0% |
| !! | AAGGAAGTTGAAAAGGCACT+AGG | + | 50583:38423-38442 | MS.gene050828:CDS | 40.0% |
| !! | GCTCGATTCAAAGCTTTTTC+CGG | + | 50583:34863-34882 | MS.gene050828:CDS | 40.0% |
| !! | GTACCTGAGAAGGTTTTATG+AGG | - | 50583:34967-34986 | None:intergenic | 40.0% |
| !! | GTTTCTGAAGCTATGCAGAT+TGG | + | 50583:38315-38334 | MS.gene050828:CDS | 40.0% |
| !!! | CGTACATCGGTTCATTTTCA+CGG | + | 50583:36677-36696 | MS.gene050828:intron | 40.0% |
| !!! | GTTTGGCTCTAGTGTTTTAG+AGG | + | 50583:35249-35268 | MS.gene050828:intron | 40.0% |
| AAACTTTCAGACCGTCCAGT+CGG | + | 50583:38723-38742 | MS.gene050828:CDS | 45.0% | |
| AAGCTATGCAGATTGGAGCA+CGG | + | 50583:38322-38341 | MS.gene050828:CDS | 45.0% | |
| AAGGTGACATCACAAGACGT+GGG | + | 50583:35668-35687 | MS.gene050828:CDS | 45.0% | |
| AATCCTACTAAGAGGGCTTC+CGG | - | 50583:37628-37647 | None:intergenic | 45.0% | |
| AATTAGCCCTCAGGTATGCA+AGG | + | 50583:38100-38119 | MS.gene050828:CDS | 45.0% | |
| ACACAGCATCGCTGTTAACT+GGG | - | 50583:37980-37999 | None:intergenic | 45.0% | |
| ACCAGCTACACCAGATATCA+TGG | + | 50583:35759-35778 | MS.gene050828:CDS | 45.0% | |
| ACTGACAGGATTGTTCCCTT+TGG | + | 50583:37230-37249 | MS.gene050828:intron | 45.0% | |
| AGTTGCAGTTCCTTCTTCAC+TGG | - | 50583:38661-38680 | None:intergenic | 45.0% | |
| ATTAGCCCTCAGGTATGCAA+GGG | + | 50583:38101-38120 | MS.gene050828:CDS | 45.0% | |
| CACATTTAGGTAGCAGTTGG+TGG | + | 50583:37148-37167 | MS.gene050828:intron | 45.0% | |
| CAGTGGCTTCTCTACATTCT+GGG | + | 50583:38070-38089 | MS.gene050828:CDS | 45.0% | |
| CATGTTCTTAGAGGATCACG+TGG | - | 50583:37836-37855 | None:intergenic | 45.0% | |
| CGAACTTGAAGAGTTAGAGC+TGG | + | 50583:38590-38609 | MS.gene050828:CDS | 45.0% | |
| CTAGTAGGTAGTACCTGAGA+AGG | - | 50583:34977-34996 | None:intergenic | 45.0% | |
| CTGACAGGATTGTTCCCTTT+GGG | + | 50583:37231-37250 | MS.gene050828:intron | 45.0% | |
| CTTCTCAGGTACTACCTACT+AGG | + | 50583:34975-34994 | MS.gene050828:intron | 45.0% | |
| GAAGTCAAGAACCACTCATG+CGG | + | 50583:38746-38765 | MS.gene050828:CDS | 45.0% | |
| GATCTTGTTGATCCAACGAG+TGG | + | 50583:35691-35710 | MS.gene050828:CDS | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | 50583:36477-36496 | MS.gene050828:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | 50583:36474-36493 | MS.gene050828:intron | 45.0% | |
| GCTTCAAATAAAGGGCAACC+CGG | - | 50583:36544-36563 | None:intergenic | 45.0% | |
| GGAACAGAAAATTAGCCCTC+AGG | + | 50583:38091-38110 | MS.gene050828:CDS | 45.0% | |
| TAGCAAAGGAAGTTCCCGAT+TGG | + | 50583:34819-34838 | MS.gene050828:CDS | 45.0% | |
| TCTGCGAATCAATGCTCTCT+TGG | - | 50583:38404-38423 | None:intergenic | 45.0% | |
| TGGAACAGCACAGTATCTGT+CGG | + | 50583:37010-37029 | MS.gene050828:CDS | 45.0% | |
| TTGCCAATCGGATCTTTGAC+CGG | - | 50583:34885-34904 | None:intergenic | 45.0% | |
| TTTCCGGTCAAAGATCCGAT+TGG | + | 50583:34879-34898 | MS.gene050828:CDS | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | 50583:36442-36461 | None:intergenic | 45.0% |
| !! | AGAGAGCATTGATTCGCAGA+AGG | + | 50583:38404-38423 | MS.gene050828:CDS | 45.0% |
| !! | AGAGGCTCAAGTTGATACAC+CGG | + | 50583:38623-38642 | MS.gene050828:CDS | 45.0% |
| !!! | AATTTGTTTTTTTTTTTTTT+AGG | + | 50583:35046-35065 | MS.gene050828:intron | 5.0% |
| AACTTTCAGACCGTCCAGTC+GGG | + | 50583:38724-38743 | MS.gene050828:CDS | 50.0% | |
| ACAGGATTGTTCCCTTTGGG+AGG | + | 50583:37234-37253 | MS.gene050828:intron | 50.0% | |
| ACTAAAGCTCCCGCATACAC+AGG | - | 50583:36518-36537 | None:intergenic | 50.0% | |
| AGCTATGCAGATTGGAGCAC+GGG | + | 50583:38323-38342 | MS.gene050828:CDS | 50.0% | |
| AGGTGACATCACAAGACGTG+GGG | + | 50583:35669-35688 | MS.gene050828:CDS | 50.0% | |
| AGTTTGCAGCTTGCAGGACT+TGG | + | 50583:36770-36789 | MS.gene050828:intron | 50.0% | |
| ATGAACTCTACAAGGGTGGC+CGG | - | 50583:35965-35984 | None:intergenic | 50.0% | |
| CATGAACGGTTGCTGATACC+AGG | - | 50583:36712-36731 | None:intergenic | 50.0% | |
| CTAAAGCTCCCGCATACACA+GGG | - | 50583:36517-36536 | None:intergenic | 50.0% | |
| CTCTCAGCAGCAGCATTATC+TGG | + | 50583:37346-37365 | MS.gene050828:CDS | 50.0% | |
| GAAGGTGACATCACAAGACG+TGG | + | 50583:35667-35686 | MS.gene050828:CDS | 50.0% | |
| GACACAGCATCGCTGTTAAC+TGG | - | 50583:37981-38000 | None:intergenic | 50.0% | |
| GACTTGAACCCGTGACCTTA+CGG | - | 50583:36420-36439 | None:intergenic | 50.0% | |
| GCAGTGGCTTCTCTACATTC+TGG | + | 50583:38069-38088 | MS.gene050828:CDS | 50.0% | |
| GCCATGATATCTGGTGTAGC+TGG | - | 50583:35763-35782 | None:intergenic | 50.0% | |
| GTATGCAAGGGAGCTGAAGT+TGG | + | 50583:38113-38132 | MS.gene050828:CDS | 50.0% | |
| GTCAGATTTCTCAGAGACCC+TGG | - | 50583:36053-36072 | None:intergenic | 50.0% | |
| GTTGTTGTCATGCGACCGTA+AGG | + | 50583:36402-36421 | MS.gene050828:intron | 50.0% | |
| GTTTGCAGCTTGCAGGACTT+GGG | + | 50583:36771-36790 | MS.gene050828:intron | 50.0% | |
| TGGGAGAATCTTCCACTCGT+TGG | - | 50583:35706-35725 | None:intergenic | 50.0% | |
| TTCTTGACTTCCCGACTGGA+CGG | - | 50583:38737-38756 | None:intergenic | 50.0% | |
| ! | AGAGCTGGCTCTTGAGAAAG+AGG | + | 50583:38605-38624 | MS.gene050828:CDS | 50.0% |
| ! | GTACACAGTTGAGGCATCCA+GGG | + | 50583:36033-36052 | MS.gene050828:intron | 50.0% |
| ! | TGTACACAGTTGAGGCATCC+AGG | + | 50583:36032-36051 | MS.gene050828:intron | 50.0% |
| ! | TTGAGGTATCTGTCAGGGTG+TGG | + | 50583:36990-37009 | MS.gene050828:CDS | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | 50583:36421-36440 | MS.gene050828:intron | 55.0% | |
| ACCACTCATGCGGCATCTGA+AGG | + | 50583:38756-38775 | MS.gene050828:CDS | 55.0% | |
| CAGCTCCCTTGCATACCTGA+GGG | - | 50583:38109-38128 | None:intergenic | 55.0% | |
| GTCATGCGACCGTAAGGTCA+CGG | + | 50583:36408-36427 | MS.gene050828:intron | 55.0% | |
| GTGGTTCTTGACTTCCCGAC+TGG | - | 50583:38741-38760 | None:intergenic | 55.0% | |
| TCAGCTCCCTTGCATACCTG+AGG | - | 50583:38110-38129 | None:intergenic | 55.0% | |
| TCAGGAGATATGTGGAGGGC+CGG | + | 50583:36950-36969 | MS.gene050828:CDS | 55.0% | |
| TCATGCGACCGTAAGGTCAC+GGG | + | 50583:36409-36428 | MS.gene050828:intron | 55.0% | |
| TCCTTCAGATGCCGCATGAG+TGG | - | 50583:38760-38779 | None:intergenic | 55.0% | |
| TGAACTCTACAAGGGTGGCC+GGG | - | 50583:35964-35983 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | 50583:36522-36541 | MS.gene050828:intron | 55.0% |
| CATACACAGGGTCCGGGAAG+GGG | - | 50583:36505-36524 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGTGTATG+CGG | + | 50583:36505-36524 | MS.gene050828:intron | 60.0% | |
| GCATACACAGGGTCCGGGAA+GGG | - | 50583:36506-36525 | None:intergenic | 60.0% | |
| GTGCCGGAAGCCCTCTTAGT+AGG | + | 50583:37622-37641 | MS.gene050828:intron | 60.0% | |
| TTCCCGGACCCTGTGTATGC+GGG | + | 50583:36506-36525 | MS.gene050828:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | 50583:36490-36509 | MS.gene050828:intron | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | 50583:36523-36542 | MS.gene050828:intron | 60.0% |
| CGCATACACAGGGTCCGGGA+AGG | - | 50583:36507-36526 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | 50583:36492-36511 | None:intergenic | 65.0% | |
| CTCCCGCATACACAGGGTCC+GGG | - | 50583:36511-36530 | None:intergenic | 65.0% | |
| GCTCCCGCATACACAGGGTC+CGG | - | 50583:36512-36531 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50583 | gene | 34794 | 38806 | 34794 | ID=MS.gene050828 |
| 50583 | mRNA | 34794 | 38806 | 34794 | ID=MS.gene050828.t1;Parent=MS.gene050828 |
| 50583 | exon | 34794 | 34982 | 34794 | ID=MS.gene050828.t1.exon1;Parent=MS.gene050828.t1 |
| 50583 | CDS | 34794 | 34982 | 34794 | ID=cds.MS.gene050828.t1;Parent=MS.gene050828.t1 |
| 50583 | exon | 35068 | 35127 | 35068 | ID=MS.gene050828.t1.exon2;Parent=MS.gene050828.t1 |
| 50583 | CDS | 35068 | 35127 | 35068 | ID=cds.MS.gene050828.t1;Parent=MS.gene050828.t1 |
| 50583 | exon | 35652 | 35816 | 35652 | ID=MS.gene050828.t1.exon3;Parent=MS.gene050828.t1 |
| 50583 | CDS | 35652 | 35816 | 35652 | ID=cds.MS.gene050828.t1;Parent=MS.gene050828.t1 |
| 50583 | exon | 36873 | 37055 | 36873 | ID=MS.gene050828.t1.exon4;Parent=MS.gene050828.t1 |
| 50583 | CDS | 36873 | 37055 | 36873 | ID=cds.MS.gene050828.t1;Parent=MS.gene050828.t1 |
| 50583 | exon | 37331 | 37461 | 37331 | ID=MS.gene050828.t1.exon5;Parent=MS.gene050828.t1 |
| 50583 | CDS | 37331 | 37461 | 37331 | ID=cds.MS.gene050828.t1;Parent=MS.gene050828.t1 |
| 50583 | exon | 38056 | 38224 | 38056 | ID=MS.gene050828.t1.exon6;Parent=MS.gene050828.t1 |
| 50583 | CDS | 38056 | 38224 | 38056 | ID=cds.MS.gene050828.t1;Parent=MS.gene050828.t1 |
| 50583 | exon | 38315 | 38444 | 38315 | ID=MS.gene050828.t1.exon7;Parent=MS.gene050828.t1 |
| 50583 | CDS | 38315 | 38444 | 38315 | ID=cds.MS.gene050828.t1;Parent=MS.gene050828.t1 |
| 50583 | exon | 38544 | 38806 | 38544 | ID=MS.gene050828.t1.exon8;Parent=MS.gene050828.t1 |
| 50583 | CDS | 38544 | 38806 | 38544 | ID=cds.MS.gene050828.t1;Parent=MS.gene050828.t1 |
| Gene Sequence |
| Protein sequence |
