Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40709.t1 | XP_013462044.1 | 98.6 | 218 | 3 | 0 | 1 | 218 | 1 | 218 | 1.10E-121 | 446 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40709.t1 | Q9XI47 | 44.4 | 239 | 102 | 4 | 12 | 221 | 11 | 247 | 8.9e-48 | 191.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40709.t1 | A0A072V207 | 98.6 | 218 | 3 | 0 | 1 | 218 | 1 | 218 | 7.8e-122 | 446.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene40709 | 0.869602 | 2.74E-66 | -1.69E-46 |
| MS.gene049272 | MS.gene40709 | 0.807447 | 5.03E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene40709 | 0.806725 | 7.15E-50 | -1.69E-46 |
| MS.gene049343 | MS.gene40709 | 0.817818 | 2.71E-52 | -1.69E-46 |
| MS.gene049567 | MS.gene40709 | 0.819216 | 1.30E-52 | -1.69E-46 |
| MS.gene049652 | MS.gene40709 | 0.808432 | 3.11E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene40709 | 0.818011 | 2.45E-52 | -1.69E-46 |
| MS.gene04973 | MS.gene40709 | 0.827291 | 1.70E-54 | -1.69E-46 |
| MS.gene049824 | MS.gene40709 | 0.829892 | 3.99E-55 | -1.69E-46 |
| MS.gene049825 | MS.gene40709 | 0.854115 | 1.53E-61 | -1.69E-46 |
| MS.gene049863 | MS.gene40709 | 0.800811 | 1.21E-48 | -1.69E-46 |
| MS.gene049873 | MS.gene40709 | 0.847462 | 1.14E-59 | -1.69E-46 |
| MS.gene050026 | MS.gene40709 | 0.817938 | 2.54E-52 | -1.69E-46 |
| MS.gene050303 | MS.gene40709 | 0.813424 | 2.58E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene40709 | 0.848554 | 5.69E-60 | -1.69E-46 |
| MS.gene050559 | MS.gene40709 | 0.857631 | 1.43E-62 | -1.69E-46 |
| MS.gene050561 | MS.gene40709 | 0.847628 | 1.03E-59 | -1.69E-46 |
| MS.gene050562 | MS.gene40709 | 0.839779 | 1.29E-57 | -1.69E-46 |
| MS.gene050799 | MS.gene40709 | 0.80695 | 6.41E-50 | -1.69E-46 |
| MS.gene050828 | MS.gene40709 | 0.821273 | 4.41E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene40709 | 0.801076 | 1.07E-48 | -1.69E-46 |
| MS.gene051332 | MS.gene40709 | 0.829009 | 6.54E-55 | -1.69E-46 |
| MS.gene051363 | MS.gene40709 | 0.82369 | 1.21E-53 | -1.69E-46 |
| MS.gene051365 | MS.gene40709 | 0.801545 | 8.56E-49 | -1.69E-46 |
| MS.gene051597 | MS.gene40709 | 0.833535 | 5.04E-56 | -1.69E-46 |
| MS.gene051678 | MS.gene40709 | 0.806584 | 7.66E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene40709 | 0.810124 | 1.35E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene40709 | 0.87864 | 2.38E-69 | -1.69E-46 |
| MS.gene051832 | MS.gene40709 | 0.840514 | 8.31E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene40709 | 0.812627 | 3.86E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene40709 | 0.837131 | 6.23E-57 | -1.69E-46 |
| MS.gene052108 | MS.gene40709 | 0.809284 | 2.04E-50 | -1.69E-46 |
| MS.gene052208 | MS.gene40709 | 0.817942 | 2.54E-52 | -1.69E-46 |
| MS.gene052500 | MS.gene40709 | 0.805802 | 1.12E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene40709 | 0.830906 | 2.26E-55 | -1.69E-46 |
| MS.gene052533 | MS.gene40709 | 0.822784 | 1.97E-53 | -1.69E-46 |
| MS.gene052534 | MS.gene40709 | 0.816029 | 6.83E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene40709 | 0.867977 | 9.19E-66 | -1.69E-46 |
| MS.gene052584 | MS.gene40709 | 0.867366 | 1.44E-65 | -1.69E-46 |
| MS.gene052586 | MS.gene40709 | 0.807022 | 6.19E-50 | -1.69E-46 |
| MS.gene052685 | MS.gene40709 | 0.825338 | 4.95E-54 | -1.69E-46 |
| MS.gene052717 | MS.gene40709 | 0.815425 | 9.31E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene40709 | 0.821934 | 3.10E-53 | -1.69E-46 |
| MS.gene052826 | MS.gene40709 | 0.802446 | 5.59E-49 | -1.69E-46 |
| MS.gene052889 | MS.gene40709 | 0.812319 | 4.50E-51 | -1.69E-46 |
| MS.gene052926 | MS.gene40709 | 0.801745 | 7.79E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene40709 | 0.81044 | 1.15E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene40709 | 0.843101 | 1.72E-58 | -1.69E-46 |
| MS.gene05308 | MS.gene40709 | 0.804061 | 2.59E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene40709 | 0.862922 | 3.60E-64 | -1.69E-46 |
| MS.gene053294 | MS.gene40709 | 0.826875 | 2.13E-54 | -1.69E-46 |
| MS.gene05365 | MS.gene40709 | 0.848171 | 7.26E-60 | -1.69E-46 |
| MS.gene053931 | MS.gene40709 | 0.80688 | 6.63E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene40709 | 0.841698 | 4.06E-58 | -1.69E-46 |
| MS.gene053995 | MS.gene40709 | 0.829195 | 5.90E-55 | -1.69E-46 |
| MS.gene05415 | MS.gene40709 | 0.810237 | 1.27E-50 | -1.69E-46 |
| MS.gene054222 | MS.gene40709 | 0.832252 | 1.05E-55 | -1.69E-46 |
| MS.gene054576 | MS.gene40709 | 0.84787 | 8.79E-60 | -1.69E-46 |
| MS.gene054651 | MS.gene40709 | 0.857758 | 1.31E-62 | -1.69E-46 |
| MS.gene054657 | MS.gene40709 | 0.813988 | 1.94E-51 | -1.69E-46 |
| MS.gene054775 | MS.gene40709 | 0.812036 | 5.19E-51 | -1.69E-46 |
| MS.gene055166 | MS.gene40709 | 0.834272 | 3.30E-56 | -1.69E-46 |
| MS.gene05548 | MS.gene40709 | 0.823655 | 1.23E-53 | -1.69E-46 |
| MS.gene055555 | MS.gene40709 | 0.812823 | 3.49E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene40709 | 0.922199 | 1.34E-88 | -1.69E-46 |
| MS.gene055589 | MS.gene40709 | 0.860341 | 2.21E-63 | -1.69E-46 |
| MS.gene055694 | MS.gene40709 | 0.815706 | 8.06E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene40709 | 0.824928 | 6.19E-54 | -1.69E-46 |
| MS.gene055801 | MS.gene40709 | 0.801059 | 1.08E-48 | -1.69E-46 |
| MS.gene055808 | MS.gene40709 | 0.840694 | 7.45E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene40709 | 0.801992 | 6.93E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene40709 | 0.841828 | 3.75E-58 | -1.69E-46 |
| MS.gene056050 | MS.gene40709 | 0.820264 | 7.52E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene40709 | 0.844072 | 9.48E-59 | -1.69E-46 |
| MS.gene056162 | MS.gene40709 | 0.817535 | 3.14E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene40709 | 0.806591 | 7.64E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene40709 | 0.822584 | 2.19E-53 | -1.69E-46 |
| MS.gene056403 | MS.gene40709 | 0.823211 | 1.56E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene40709 | 0.810801 | 9.62E-51 | -1.69E-46 |
| MS.gene05659 | MS.gene40709 | 0.826845 | 2.17E-54 | -1.69E-46 |
| MS.gene056605 | MS.gene40709 | 0.819891 | 9.15E-53 | -1.69E-46 |
| MS.gene056699 | MS.gene40709 | 0.812782 | 3.57E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene40709 | 0.818092 | 2.35E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene40709 | 0.848793 | 4.89E-60 | -1.69E-46 |
| MS.gene05689 | MS.gene40709 | 0.830678 | 2.56E-55 | -1.69E-46 |
| MS.gene05690 | MS.gene40709 | 0.812549 | 4.01E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene40709 | 0.846312 | 2.35E-59 | -1.69E-46 |
| MS.gene057026 | MS.gene40709 | 0.845132 | 4.91E-59 | -1.69E-46 |
| MS.gene057027 | MS.gene40709 | 0.814212 | 1.73E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene40709 | 0.846679 | 1.87E-59 | -1.69E-46 |
| MS.gene057208 | MS.gene40709 | 0.846369 | 2.27E-59 | -1.69E-46 |
| MS.gene057598 | MS.gene40709 | 0.822284 | 2.57E-53 | -1.69E-46 |
| MS.gene057611 | MS.gene40709 | 0.813532 | 2.44E-51 | -1.69E-46 |
| MS.gene058008 | MS.gene40709 | 0.82132 | 4.30E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene40709 | 0.814405 | 1.57E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene40709 | 0.838358 | 3.02E-57 | -1.69E-46 |
| MS.gene058498 | MS.gene40709 | 0.838971 | 2.09E-57 | -1.69E-46 |
| MS.gene058500 | MS.gene40709 | 0.820357 | 7.16E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene40709 | 0.824336 | 8.53E-54 | -1.69E-46 |
| MS.gene058635 | MS.gene40709 | 0.802434 | 5.62E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene40709 | 0.804738 | 1.87E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene40709 | 0.815444 | 9.22E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene40709 | 0.836315 | 1.01E-56 | -1.69E-46 |
| MS.gene05950 | MS.gene40709 | 0.831007 | 2.13E-55 | -1.69E-46 |
| MS.gene05952 | MS.gene40709 | 0.812361 | 4.41E-51 | -1.69E-46 |
| MS.gene05953 | MS.gene40709 | 0.813484 | 2.50E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene40709 | 0.840597 | 7.90E-58 | -1.69E-46 |
| MS.gene059625 | MS.gene40709 | 0.825957 | 3.53E-54 | -1.69E-46 |
| MS.gene05985 | MS.gene40709 | -0.862603 | 4.51E-64 | -1.69E-46 |
| MS.gene059935 | MS.gene40709 | 0.889182 | 3.05E-73 | -1.69E-46 |
| MS.gene060365 | MS.gene40709 | 0.859971 | 2.86E-63 | -1.69E-46 |
| MS.gene060429 | MS.gene40709 | 0.822621 | 2.15E-53 | -1.69E-46 |
| MS.gene060521 | MS.gene40709 | 0.846455 | 2.15E-59 | -1.69E-46 |
| MS.gene060572 | MS.gene40709 | 0.828027 | 1.13E-54 | -1.69E-46 |
| MS.gene060586 | MS.gene40709 | 0.813793 | 2.14E-51 | -1.69E-46 |
| MS.gene060716 | MS.gene40709 | 0.810766 | 9.79E-51 | -1.69E-46 |
| MS.gene060840 | MS.gene40709 | 0.808793 | 2.60E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene40709 | 0.835736 | 1.41E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene40709 | 0.845841 | 3.16E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene40709 | 0.843313 | 1.51E-58 | -1.69E-46 |
| MS.gene06094 | MS.gene40709 | 0.806226 | 9.12E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene40709 | 0.825599 | 4.29E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40709.t1 | MTR_3g110260 | 98.624 | 218 | 3 | 0 | 1 | 218 | 1 | 218 | 7.42e-164 | 452 |
| MS.gene40709.t1 | MTR_8g061040 | 39.231 | 260 | 122 | 5 | 1 | 230 | 1 | 254 | 4.42e-60 | 194 |
| MS.gene40709.t1 | MTR_8g014075 | 38.095 | 231 | 121 | 3 | 8 | 218 | 7 | 235 | 1.21e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40709.t1 | AT1G15215 | 44.351 | 239 | 102 | 4 | 12 | 221 | 11 | 247 | 8.65e-62 | 194 |
| MS.gene40709.t1 | AT1G15215 | 44.068 | 236 | 101 | 4 | 12 | 218 | 11 | 244 | 6.69e-61 | 192 |
| MS.gene40709.t1 | AT1G15215 | 44.068 | 236 | 101 | 4 | 12 | 218 | 11 | 244 | 1.01e-60 | 192 |
| MS.gene40709.t1 | AT3G18380 | 38.267 | 277 | 116 | 5 | 1 | 230 | 1 | 269 | 8.20e-57 | 184 |
| MS.gene40709.t1 | AT3G18380 | 38.267 | 277 | 115 | 5 | 1 | 230 | 1 | 268 | 1.57e-56 | 184 |
| MS.gene40709.t1 | AT3G18380 | 38.745 | 271 | 120 | 7 | 1 | 230 | 1 | 266 | 6.87e-56 | 182 |
| MS.gene40709.t1 | AT1G15215 | 35.484 | 155 | 69 | 4 | 12 | 137 | 11 | 163 | 2.32e-18 | 79.7 |
Find 48 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTCAGATTGAGAAAA+TGG | 0.159542 | 3.2:-88438039 | MS.gene40709:intron |
| GAACATAGTCTCCAACTTTC+AGG | 0.226239 | 3.2:+88436052 | None:intergenic |
| GAAAACAGACTTGAAACTTT+TGG | 0.264857 | 3.2:+88437953 | None:intergenic |
| CGAAAGGAACTGAGCGTTCC+CGG | 0.320535 | 3.2:+88436094 | None:intergenic |
| AGAGTCAGATTTGTTGGGTT+TGG | 0.339869 | 3.2:-88436156 | MS.gene40709:CDS |
| AGCTTATCATCTGGTCGTGC+TGG | 0.372792 | 3.2:-88437858 | MS.gene40709:CDS |
| AGACTATGTTCTGTGCTTCC+AGG | 0.376950 | 3.2:-88436040 | MS.gene40709:intron |
| AAAAGTACCTCAAAATGAAT+TGG | 0.377374 | 3.2:-88437653 | MS.gene40709:CDS |
| GGATATCATGCATTCTCCTT+TGG | 0.380382 | 3.2:+88435888 | None:intergenic |
| GAAGTCAGAGTCAGATTTGT+TGG | 0.404906 | 3.2:-88436162 | MS.gene40709:CDS |
| AAATGTGACACCTGCAACCT+CGG | 0.422569 | 3.2:+88435867 | None:intergenic |
| TATTTCTTTGACGTTCCAGC+TGG | 0.431113 | 3.2:-88435670 | MS.gene40709:CDS |
| CTGGGAAACCTGTCATCAAA+TGG | 0.437508 | 3.2:-88437839 | MS.gene40709:CDS |
| GTCATGTATATCTAAGATCT+TGG | 0.438432 | 3.2:+88435695 | None:intergenic |
| GTAGGAAGGTACCTCAGAAT+TGG | 0.440658 | 3.2:+88438125 | None:intergenic |
| ACCTGAGTCCATTTGATGAC+AGG | 0.456466 | 3.2:+88437831 | None:intergenic |
| TTCCAACTCTGATGAGTCTC+GGG | 0.471097 | 3.2:+88437171 | None:intergenic |
| AAGTCAGAGTCAGATTTGTT+GGG | 0.473120 | 3.2:-88436161 | MS.gene40709:CDS |
| TTGTCTTGTAGCTTATCATC+TGG | 0.483456 | 3.2:-88437867 | MS.gene40709:intron |
| CTCTGACCTTCCTTGCATTG+AGG | 0.498752 | 3.2:+88437625 | None:intergenic |
| GCACACAGATTTCTTAGCAC+AGG | 0.502053 | 3.2:-88436280 | MS.gene40709:CDS |
| CACACAGATTTCTTAGCACA+GGG | 0.505636 | 3.2:-88436279 | MS.gene40709:CDS |
| TTGCTAAGGGAATCATCAAA+AGG | 0.520977 | 3.2:-88438011 | MS.gene40709:CDS |
| ATTCCAACTCTGATGAGTCT+CGG | 0.521550 | 3.2:+88437170 | None:intergenic |
| CTCAGTTCCTTTCGAGAACA+CGG | 0.527058 | 3.2:-88436085 | MS.gene40709:CDS |
| ATTTGTTGGGTTTGGAGCTG+AGG | 0.536262 | 3.2:-88436148 | MS.gene40709:CDS |
| TGCATGATATCCGAGGTTGC+AGG | 0.537901 | 3.2:-88435877 | MS.gene40709:CDS |
| GCATATGTGCTCACCATGCT+TGG | 0.545702 | 3.2:+88437125 | None:intergenic |
| CACCCGAGACTCATCAGAGT+TGG | 0.547609 | 3.2:-88437173 | MS.gene40709:CDS |
| GCTTATCATCTGGTCGTGCT+GGG | 0.552961 | 3.2:-88437857 | MS.gene40709:CDS |
| TTCTGGATTCACCAATTCTG+AGG | 0.559706 | 3.2:-88438136 | MS.gene40709:intron |
| GAGTGTTCCAACCTGAAAGT+TGG | 0.564740 | 3.2:-88436063 | MS.gene40709:CDS |
| ATAGTCTCCAACTTTCAGGT+TGG | 0.570305 | 3.2:+88436056 | None:intergenic |
| ATTGGTTTCTCCTCAATGCA+AGG | 0.583252 | 3.2:-88437635 | MS.gene40709:CDS |
| TCTAGGAAAGAGTTCGCTTG+AGG | 0.588698 | 3.2:-88435733 | MS.gene40709:intron |
| GAACACTCCGTGTTCTCGAA+AGG | 0.592495 | 3.2:+88436078 | None:intergenic |
| ACCTGTCATCAAATGGACTC+AGG | 0.592515 | 3.2:-88437832 | MS.gene40709:intron |
| TGGAAAGCTACTTACCCAGC+TGG | 0.592982 | 3.2:+88435655 | None:intergenic |
| CTCACATTGTAGAGATCCAA+AGG | 0.594628 | 3.2:-88435904 | MS.gene40709:CDS |
| ATTTCTTTGACGTTCCAGCT+GGG | 0.595424 | 3.2:-88435669 | None:intergenic |
| TGGAGCTGAGGAAGATGAGT+GGG | 0.595934 | 3.2:-88436136 | MS.gene40709:CDS |
| GATCTTCGAAAGACCAAGCA+TGG | 0.600049 | 3.2:-88437138 | MS.gene40709:intron |
| GTTTCTCCTCAATGCAAGGA+AGG | 0.620933 | 3.2:-88437631 | MS.gene40709:intron |
| ATATCTAAGATCTTGGTCTG+TGG | 0.670538 | 3.2:+88435702 | None:intergenic |
| TTGGAGCTGAGGAAGATGAG+TGG | 0.671942 | 3.2:-88436137 | MS.gene40709:CDS |
| AGGAGAATGCATGATATCCG+AGG | 0.689625 | 3.2:-88435884 | MS.gene40709:CDS |
| ACACAGATTTCTTAGCACAG+GGG | 0.750555 | 3.2:-88436278 | MS.gene40709:CDS |
| ATATGATCACGACAACAACG+AGG | 0.764532 | 3.2:-88435837 | MS.gene40709:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATTTAATGATTTAGT+TGG | + | chr3.2:88437410-88437429 | None:intergenic | 15.0% |
| !! | ATATAATTGTAAAAACTTAC+AGG | + | chr3.2:88437591-88437610 | None:intergenic | 15.0% |
| !! | ATATATACAACTTAAATGAA+TGG | + | chr3.2:88437274-88437293 | None:intergenic | 15.0% |
| !! | CTAACTAAATAAAAAAGTAA+AGG | + | chr3.2:88436555-88436574 | None:intergenic | 15.0% |
| !! | TAAAAAATAACAATTTAGTG+TGG | + | chr3.2:88436869-88436888 | None:intergenic | 15.0% |
| !! | TAAAATTCCCATAAAAATAA+AGG | + | chr3.2:88436129-88436148 | None:intergenic | 15.0% |
| !! | TTATGGTTTATAGTTAAAAT+TGG | + | chr3.2:88437329-88437348 | None:intergenic | 15.0% |
| !!! | AATTGTTCCTTTATTTTTAT+GGG | - | chr3.2:88436119-88436138 | MS.gene40709:CDS | 15.0% |
| !!! | TAATTGTTCCTTTATTTTTA+TGG | - | chr3.2:88436118-88436137 | MS.gene40709:CDS | 15.0% |
| !!! | TTTTCTTTTTGTTATATTCT+AGG | - | chr3.2:88438091-88438110 | MS.gene40709:intron | 15.0% |
| !! | AAATGTTTAATGCATAATTG+AGG | + | chr3.2:88437002-88437021 | None:intergenic | 20.0% |
| !! | ATTATAAATCACACATGAAA+TGG | + | chr3.2:88438062-88438081 | None:intergenic | 20.0% |
| !! | CTGAAATGAAATAAGATTAA+AGG | + | chr3.2:88435792-88435811 | None:intergenic | 20.0% |
| !! | TGAAATAAGATTAAAGGTAA+CGG | + | chr3.2:88435786-88435805 | None:intergenic | 20.0% |
| !!! | AACTTTTTCACATCTATAAT+AGG | - | chr3.2:88437054-88437073 | MS.gene40709:intron | 20.0% |
| !!! | ATTTTTTAGCATGTATGATA+CGG | + | chr3.2:88437147-88437166 | None:intergenic | 20.0% |
| !!! | TAAATTTTAATGTCACTGAA+AGG | - | chr3.2:88436795-88436814 | MS.gene40709:intron | 20.0% |
| !!! | TAATTAAAAGTGCATTTCAA+AGG | + | chr3.2:88436100-88436119 | None:intergenic | 20.0% |
| ! | AACAAAGAAACAATGATTGA+GGG | + | chr3.2:88435915-88435934 | None:intergenic | 25.0% |
| ! | AAGATTCTTTGACTAAAATC+TGG | - | chr3.2:88437239-88437258 | MS.gene40709:intron | 25.0% |
| ! | AGAAAATGGAAAAATTGCTA+AGG | - | chr3.2:88435816-88435835 | MS.gene40709:intron | 25.0% |
| ! | AGAGAGTAAAAGAAAAAAGT+AGG | + | chr3.2:88435737-88435756 | None:intergenic | 25.0% |
| ! | AGTAAAAGAAAAAAGTAGGA+AGG | + | chr3.2:88435733-88435752 | None:intergenic | 25.0% |
| ! | ATACATGCTAAAAAATTGTG+AGG | - | chr3.2:88437151-88437170 | MS.gene40709:CDS | 25.0% |
| ! | ATGAAGCTATAAACAATCTA+TGG | + | chr3.2:88436921-88436940 | None:intergenic | 25.0% |
| ! | ATGTAATTTACTTCAGAATG+CGG | - | chr3.2:88436372-88436391 | MS.gene40709:intron | 25.0% |
| ! | CCATAAAACAGATAGTATAT+AGG | - | chr3.2:88437343-88437362 | MS.gene40709:intron | 25.0% |
| ! | GAAAATGGAAAAATTGCTAA+GGG | - | chr3.2:88435817-88435836 | MS.gene40709:intron | 25.0% |
| ! | GTAGTATTCAGTTAATTATC+TGG | - | chr3.2:88437090-88437109 | MS.gene40709:intron | 25.0% |
| ! | GTTGTATATATGTATATGTG+TGG | - | chr3.2:88437283-88437302 | MS.gene40709:intron | 25.0% |
| ! | TCAACATAAAAAATTCAGTC+CGG | - | chr3.2:88437728-88437747 | MS.gene40709:intron | 25.0% |
| ! | TTCATTTCAGATTGAGAAAA+TGG | - | chr3.2:88435802-88435821 | MS.gene40709:intron | 25.0% |
| !! | CCTATATACTATCTGTTTTA+TGG | + | chr3.2:88437346-88437365 | None:intergenic | 25.0% |
| !! | CTTTTATAACTATACATGGA+TGG | - | chr3.2:88437214-88437233 | MS.gene40709:intron | 25.0% |
| !! | TCGTCTTTTATAACTATACA+TGG | - | chr3.2:88437210-88437229 | MS.gene40709:intron | 25.0% |
| !!! | AAAAGTACCTCAAAATGAAT+TGG | - | chr3.2:88436188-88436207 | MS.gene40709:intron | 25.0% |
| !!! | AATTCATTTTGAGGTACTTT+TGG | + | chr3.2:88436189-88436208 | None:intergenic | 25.0% |
| !!! | ATGTTAAACTGCATTGATTA+TGG | - | chr3.2:88436422-88436441 | MS.gene40709:intron | 25.0% |
| !!! | GTAAGAGTTTTGAAAATCAT+TGG | + | chr3.2:88437385-88437404 | None:intergenic | 25.0% |
| !!! | TAGTTTTTGGTAAAAATCGA+GGG | + | chr3.2:88435867-88435886 | None:intergenic | 25.0% |
| !!! | TTTTTTAGCATGTATGATAC+GGG | + | chr3.2:88437146-88437165 | None:intergenic | 25.0% |
| AAAATCTAGTACACCCTATA+AGG | + | chr3.2:88437628-88437647 | None:intergenic | 30.0% | |
| AAATCTAGTACACCCTATAA+GGG | + | chr3.2:88437627-88437646 | None:intergenic | 30.0% | |
| AACTATCCTAACAACGTTTA+AGG | + | chr3.2:88436253-88436272 | None:intergenic | 30.0% | |
| AAGTAAAGGAAAACAGAAAG+TGG | + | chr3.2:88436541-88436560 | None:intergenic | 30.0% | |
| AATCATTGGAGGAAGAAAAT+TGG | + | chr3.2:88437371-88437390 | None:intergenic | 30.0% | |
| ACATTACCTTAAACGTTGTT+AGG | - | chr3.2:88436244-88436263 | MS.gene40709:intron | 30.0% | |
| AGTAAAGGAAAACAGAAAGT+GGG | + | chr3.2:88436540-88436559 | None:intergenic | 30.0% | |
| ATATATGCAGAATTCACGAA+TGG | + | chr3.2:88436766-88436785 | None:intergenic | 30.0% | |
| CAACAAAGAAACAATGATTG+AGG | + | chr3.2:88435916-88435935 | None:intergenic | 30.0% | |
| CAACATAAAAAATTCAGTCC+GGG | - | chr3.2:88437729-88437748 | MS.gene40709:intron | 30.0% | |
| TACAATTTGTCCAAGTCTAA+AGG | - | chr3.2:88437506-88437525 | MS.gene40709:intron | 30.0% | |
| TCCTGTGTATTTCAATGTTT+GGG | - | chr3.2:88436307-88436326 | MS.gene40709:intron | 30.0% | |
| TTAAACGTTGTTAGGATAGT+TGG | - | chr3.2:88436252-88436271 | MS.gene40709:intron | 30.0% | |
| TTGGTGAATCCAGAAAAAAT+AGG | + | chr3.2:88435700-88435719 | None:intergenic | 30.0% | |
| ! | AACAACGTTTAAGGTAATGT+AGG | + | chr3.2:88436244-88436263 | None:intergenic | 30.0% |
| ! | AACAGTTTCTCCTTTTGTAA+AGG | - | chr3.2:88437657-88437676 | MS.gene40709:CDS | 30.0% |
| ! | ATCATTGTTTCTTTGTTGGT+CGG | - | chr3.2:88435918-88435937 | MS.gene40709:CDS | 30.0% |
| ! | CTCAATCATTGTTTCTTTGT+TGG | - | chr3.2:88435914-88435933 | MS.gene40709:CDS | 30.0% |
| ! | GAAAACAGACTTGAAACTTT+TGG | + | chr3.2:88435891-88435910 | None:intergenic | 30.0% |
| ! | GACAGTTTCAATGTGTTTTT+AGG | - | chr3.2:88437884-88437903 | MS.gene40709:intron | 30.0% |
| ! | GGGAATTTTAGATACATAGT+TGG | - | chr3.2:88436139-88436158 | MS.gene40709:CDS | 30.0% |
| ! | GTCATGTATATCTAAGATCT+TGG | + | chr3.2:88438149-88438168 | None:intergenic | 30.0% |
| !!! | AGAGTTTTGAAAATCATTGG+AGG | + | chr3.2:88437382-88437401 | None:intergenic | 30.0% |
| !!! | CTAGTTTTTGGTAAAAATCG+AGG | + | chr3.2:88435868-88435887 | None:intergenic | 30.0% |
| !!! | CTTCAATGCCATTTTTACTT+TGG | - | chr3.2:88436891-88436910 | MS.gene40709:intron | 30.0% |
| !!! | GTTTTAAGAAAATGACACCA+AGG | - | chr3.2:88436461-88436480 | MS.gene40709:intron | 30.0% |
| !!! | TGAAACTTTTGGCTAGTTTT+TGG | + | chr3.2:88435880-88435899 | None:intergenic | 30.0% |
| !!! | TTTCAATGTGTTTTTAGGAG+AGG | - | chr3.2:88437889-88437908 | MS.gene40709:intron | 30.0% |
| AAACTTTGACCTAAATCACC+TGG | + | chr3.2:88437822-88437841 | None:intergenic | 35.0% | |
| AAAGGAGAAACTGTTTAAGC+TGG | + | chr3.2:88437652-88437671 | None:intergenic | 35.0% | |
| AATCTAGTACACCCTATAAG+GGG | + | chr3.2:88437626-88437645 | None:intergenic | 35.0% | |
| ACATTGAAATACACAGGACA+AGG | + | chr3.2:88436305-88436324 | None:intergenic | 35.0% | |
| ACTCTGACTTCCTTTACAAA+AGG | + | chr3.2:88437670-88437689 | None:intergenic | 35.0% | |
| ATGGACCACCAAAGTAAAAA+TGG | + | chr3.2:88436902-88436921 | None:intergenic | 35.0% | |
| ATTTCAATGTTTGGGCCTTT+AGG | - | chr3.2:88436315-88436334 | MS.gene40709:intron | 35.0% | |
| CAGTTAATTATCTGGTGTTC+TGG | - | chr3.2:88437098-88437117 | MS.gene40709:intron | 35.0% | |
| CTCAAATATTTGCGAACACA+AGG | + | chr3.2:88436584-88436603 | None:intergenic | 35.0% | |
| GAAAAAATAGGTCTGTTACG+AGG | + | chr3.2:88435688-88435707 | None:intergenic | 35.0% | |
| GATGTCCTTTAACTGTTCTA+TGG | + | chr3.2:88437850-88437869 | None:intergenic | 35.0% | |
| GTCCTGTGTATTTCAATGTT+TGG | - | chr3.2:88436306-88436325 | MS.gene40709:intron | 35.0% | |
| TTCATAGCTTTCCCCTTATA+GGG | - | chr3.2:88437612-88437631 | MS.gene40709:intron | 35.0% | |
| TTGCTAAGGGAATCATCAAA+AGG | - | chr3.2:88435830-88435849 | MS.gene40709:intron | 35.0% | |
| TTGTCTTGTAGCTTATCATC+TGG | - | chr3.2:88435974-88435993 | MS.gene40709:intron | 35.0% | |
| TTTCAATGTTTGGGCCTTTA+GGG | - | chr3.2:88436316-88436335 | MS.gene40709:intron | 35.0% | |
| ! | AAGTCAGAGTCAGATTTGTT+GGG | - | chr3.2:88437680-88437699 | MS.gene40709:CDS | 35.0% |
| ! | ATATCTAAGATCTTGGTCTG+TGG | + | chr3.2:88438142-88438161 | None:intergenic | 35.0% |
| ! | ATTTTCGACAATGACATCAG+TGG | - | chr3.2:88437471-88437490 | MS.gene40709:intron | 35.0% |
| ! | GGAGAAACCAATTCATTTTG+AGG | + | chr3.2:88436198-88436217 | None:intergenic | 35.0% |
| ! | TGTGGATTAATATCAGCATG+TGG | + | chr3.2:88436851-88436870 | None:intergenic | 35.0% |
| !!! | CAATGCCATTTTTACTTTGG+TGG | - | chr3.2:88436894-88436913 | MS.gene40709:intron | 35.0% |
| !!! | CGTAACAGACCTATTTTTTC+TGG | - | chr3.2:88435688-88435707 | MS.gene40709:CDS | 35.0% |
| !!! | GTCTGAAATGAGTTTTTTGC+AGG | - | chr3.2:88436639-88436658 | MS.gene40709:intron | 35.0% |
| !!! | TGGGTGTTATTTCTGCATTT+TGG | - | chr3.2:88438027-88438046 | MS.gene40709:CDS | 35.0% |
| ACACAGATTTCTTAGCACAG+GGG | - | chr3.2:88437563-88437582 | MS.gene40709:intron | 40.0% | |
| AGAAAATGACACCAAGGACA+AGG | - | chr3.2:88436467-88436486 | MS.gene40709:intron | 40.0% | |
| AGCAATGAGGGACTATCAAA+AGG | - | chr3.2:88436502-88436521 | MS.gene40709:intron | 40.0% | |
| ATATGATCACGACAACAACG+AGG | - | chr3.2:88438004-88438023 | MS.gene40709:CDS | 40.0% | |
| ATTCCAACTCTGATGAGTCT+CGG | + | chr3.2:88436674-88436693 | None:intergenic | 40.0% | |
| CACACAGATTTCTTAGCACA+GGG | - | chr3.2:88437562-88437581 | MS.gene40709:intron | 40.0% | |
| CCTCACCATAGAACAGTTAA+AGG | - | chr3.2:88437842-88437861 | MS.gene40709:CDS | 40.0% | |
| CCTTTAACTGTTCTATGGTG+AGG | + | chr3.2:88437845-88437864 | None:intergenic | 40.0% | |
| CTCACATTGTAGAGATCCAA+AGG | - | chr3.2:88437937-88437956 | MS.gene40709:intron | 40.0% | |
| GAACATAGTCTCCAACTTTC+AGG | + | chr3.2:88437792-88437811 | None:intergenic | 40.0% | |
| GAAGTCAGAGTCAGATTTGT+TGG | - | chr3.2:88437679-88437698 | MS.gene40709:CDS | 40.0% | |
| GCCCAAACATTGAAATACAC+AGG | + | chr3.2:88436311-88436330 | None:intergenic | 40.0% | |
| GGATATCATGCATTCTCCTT+TGG | + | chr3.2:88437956-88437975 | None:intergenic | 40.0% | |
| GTTCATAGCTTTCCCCTTAT+AGG | - | chr3.2:88437611-88437630 | MS.gene40709:intron | 40.0% | |
| TATTTCTTTGACGTTCCAGC+TGG | - | chr3.2:88438171-88438190 | MS.gene40709:CDS | 40.0% | |
| TTAAACCAGCACTTCTAGTG+AGG | - | chr3.2:88436612-88436631 | MS.gene40709:intron | 40.0% | |
| TTCTGGATTCACCAATTCTG+AGG | - | chr3.2:88435705-88435724 | MS.gene40709:CDS | 40.0% | |
| ! | ATAGTCTCCAACTTTCAGGT+TGG | + | chr3.2:88437788-88437807 | None:intergenic | 40.0% |
| ! | ATTGGTTTCTCCTCAATGCA+AGG | - | chr3.2:88436206-88436225 | MS.gene40709:intron | 40.0% |
| ! | CATATCTGAAGTGACCCTAA+AGG | + | chr3.2:88436333-88436352 | None:intergenic | 40.0% |
| ! | TGTGGTGTGTTTCAAGTGAA+AGG | - | chr3.2:88437301-88437320 | MS.gene40709:intron | 40.0% |
| !! | AGAGTCAGATTTGTTGGGTT+TGG | - | chr3.2:88437685-88437704 | MS.gene40709:CDS | 40.0% |
| AAATGTGACACCTGCAACCT+CGG | + | chr3.2:88437977-88437996 | None:intergenic | 45.0% | |
| AAGTGACTGGGAAGCAATGA+GGG | - | chr3.2:88436490-88436509 | MS.gene40709:intron | 45.0% | |
| AGACTATGTTCTGTGCTTCC+AGG | - | chr3.2:88437801-88437820 | MS.gene40709:intron | 45.0% | |
| AGGAGAATGCATGATATCCG+AGG | - | chr3.2:88437957-88437976 | MS.gene40709:intron | 45.0% | |
| CACTGATCTCACTGTATTCC+TGG | - | chr3.2:88436941-88436960 | MS.gene40709:intron | 45.0% | |
| CTCAGTTCCTTTCGAGAACA+CGG | - | chr3.2:88437756-88437775 | MS.gene40709:intron | 45.0% | |
| CTGCAGCAAACCTTTAGACT+TGG | + | chr3.2:88437519-88437538 | None:intergenic | 45.0% | |
| CTGGGAAACCTGTCATCAAA+TGG | - | chr3.2:88436002-88436021 | MS.gene40709:intron | 45.0% | |
| GAGTGTTCCAACCTGAAAGT+TGG | - | chr3.2:88437778-88437797 | MS.gene40709:intron | 45.0% | |
| GATCTTCGAAAGACCAAGCA+TGG | - | chr3.2:88436703-88436722 | MS.gene40709:intron | 45.0% | |
| GCACACAGATTTCTTAGCAC+AGG | - | chr3.2:88437561-88437580 | MS.gene40709:intron | 45.0% | |
| GTTTCTCCTCAATGCAAGGA+AGG | - | chr3.2:88436210-88436229 | MS.gene40709:intron | 45.0% | |
| TCTAGGAAAGAGTTCGCTTG+AGG | - | chr3.2:88438108-88438127 | MS.gene40709:intron | 45.0% | |
| TCTGTGCTTCCAGGTGATTT+AGG | - | chr3.2:88437810-88437829 | MS.gene40709:intron | 45.0% | |
| TTCCAACTCTGATGAGTCTC+GGG | + | chr3.2:88436673-88436692 | None:intergenic | 45.0% | |
| TTGCCTAGTCGTAGACATAC+AGG | - | chr3.2:88437442-88437461 | MS.gene40709:intron | 45.0% | |
| ! | ACCTGAGTCCATTTGATGAC+AGG | + | chr3.2:88436013-88436032 | None:intergenic | 45.0% |
| ! | ACCTGTCATCAAATGGACTC+AGG | - | chr3.2:88436009-88436028 | MS.gene40709:intron | 45.0% |
| ! | ATTTGTTGGGTTTGGAGCTG+AGG | - | chr3.2:88437693-88437712 | MS.gene40709:CDS | 45.0% |
| ! | TGTCAAATCGAAAGCATGCC+AGG | + | chr3.2:88436962-88436981 | None:intergenic | 45.0% |
| !! | CAAGTCTAAAGGTTTGCTGC+AGG | - | chr3.2:88437517-88437536 | MS.gene40709:intron | 45.0% |
| !! | GAAGTGCTGGTTTAAGCAGT+TGG | + | chr3.2:88436607-88436626 | None:intergenic | 45.0% |
| !! | GAGGTACTTTTGGTGAGTCT+TGG | + | chr3.2:88436179-88436198 | None:intergenic | 45.0% |
| !! | GTAGGAAGGTACCTCAGAAT+TGG | + | chr3.2:88435719-88435738 | None:intergenic | 45.0% |
| ACCAAGGACAAGGAAGTGAC+TGG | - | chr3.2:88436477-88436496 | MS.gene40709:intron | 50.0% | |
| AGCTTATCATCTGGTCGTGC+TGG | - | chr3.2:88435983-88436002 | MS.gene40709:intron | 50.0% | |
| CCAAGGACAAGGAAGTGACT+GGG | - | chr3.2:88436478-88436497 | MS.gene40709:intron | 50.0% | |
| CTCTGACCTTCCTTGCATTG+AGG | + | chr3.2:88436219-88436238 | None:intergenic | 50.0% | |
| GAACACTCCGTGTTCTCGAA+AGG | + | chr3.2:88437766-88437785 | None:intergenic | 50.0% | |
| GAAGTGACTGGGAAGCAATG+AGG | - | chr3.2:88436489-88436508 | MS.gene40709:intron | 50.0% | |
| GATCACGACAACAACGAGGT+GGG | - | chr3.2:88438008-88438027 | MS.gene40709:CDS | 50.0% | |
| GCATATGTGCTCACCATGCT+TGG | + | chr3.2:88436719-88436738 | None:intergenic | 50.0% | |
| GCTTATCATCTGGTCGTGCT+GGG | - | chr3.2:88435984-88436003 | MS.gene40709:intron | 50.0% | |
| GTGCCTGTATGTCTACGACT+AGG | + | chr3.2:88437448-88437467 | None:intergenic | 50.0% | |
| TGATCACGACAACAACGAGG+TGG | - | chr3.2:88438007-88438026 | MS.gene40709:CDS | 50.0% | |
| TGCATGATATCCGAGGTTGC+AGG | - | chr3.2:88437964-88437983 | MS.gene40709:CDS | 50.0% | |
| TGGAGCTGAGGAAGATGAGT+GGG | - | chr3.2:88437705-88437724 | MS.gene40709:intron | 50.0% | |
| TTGGAGCTGAGGAAGATGAG+TGG | - | chr3.2:88437704-88437723 | MS.gene40709:intron | 50.0% | |
| ! | CTCAACCTCACTAGAAGTGC+TGG | + | chr3.2:88436620-88436639 | None:intergenic | 50.0% |
| CACCCGAGACTCATCAGAGT+TGG | - | chr3.2:88436668-88436687 | MS.gene40709:intron | 55.0% | |
| CCCAGTCACTTCCTTGTCCT+TGG | + | chr3.2:88436481-88436500 | None:intergenic | 55.0% | |
| CGAAAGGAACTGAGCGTTCC+CGG | + | chr3.2:88437750-88437769 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 88435670 | 88438193 | 88435670 | ID=MS.gene40709 |
| chr3.2 | mRNA | 88435670 | 88438193 | 88435670 | ID=MS.gene40709.t1;Parent=MS.gene40709 |
| chr3.2 | exon | 88438137 | 88438193 | 88438137 | ID=MS.gene40709.t1.exon1;Parent=MS.gene40709.t1 |
| chr3.2 | CDS | 88438137 | 88438193 | 88438137 | ID=cds.MS.gene40709.t1;Parent=MS.gene40709.t1 |
| chr3.2 | exon | 88437963 | 88438051 | 88437963 | ID=MS.gene40709.t1.exon2;Parent=MS.gene40709.t1 |
| chr3.2 | CDS | 88437963 | 88438051 | 88437963 | ID=cds.MS.gene40709.t1;Parent=MS.gene40709.t1 |
| chr3.2 | exon | 88437833 | 88437878 | 88437833 | ID=MS.gene40709.t1.exon3;Parent=MS.gene40709.t1 |
| chr3.2 | CDS | 88437833 | 88437878 | 88437833 | ID=cds.MS.gene40709.t1;Parent=MS.gene40709.t1 |
| chr3.2 | exon | 88437632 | 88437713 | 88437632 | ID=MS.gene40709.t1.exon4;Parent=MS.gene40709.t1 |
| chr3.2 | CDS | 88437632 | 88437713 | 88437632 | ID=cds.MS.gene40709.t1;Parent=MS.gene40709.t1 |
| chr3.2 | exon | 88437139 | 88437202 | 88437139 | ID=MS.gene40709.t1.exon5;Parent=MS.gene40709.t1 |
| chr3.2 | CDS | 88437139 | 88437202 | 88437139 | ID=cds.MS.gene40709.t1;Parent=MS.gene40709.t1 |
| chr3.2 | exon | 88436273 | 88436324 | 88436273 | ID=MS.gene40709.t1.exon6;Parent=MS.gene40709.t1 |
| chr3.2 | CDS | 88436273 | 88436324 | 88436273 | ID=cds.MS.gene40709.t1;Parent=MS.gene40709.t1 |
| chr3.2 | exon | 88436041 | 88436184 | 88436041 | ID=MS.gene40709.t1.exon7;Parent=MS.gene40709.t1 |
| chr3.2 | CDS | 88436041 | 88436184 | 88436041 | ID=cds.MS.gene40709.t1;Parent=MS.gene40709.t1 |
| chr3.2 | exon | 88435838 | 88435957 | 88435838 | ID=MS.gene40709.t1.exon8;Parent=MS.gene40709.t1 |
| chr3.2 | CDS | 88435838 | 88435957 | 88435838 | ID=cds.MS.gene40709.t1;Parent=MS.gene40709.t1 |
| chr3.2 | exon | 88435670 | 88435745 | 88435670 | ID=MS.gene40709.t1.exon9;Parent=MS.gene40709.t1 |
| chr3.2 | CDS | 88435670 | 88435745 | 88435670 | ID=cds.MS.gene40709.t1;Parent=MS.gene40709.t1 |
| Gene Sequence |
| Protein sequence |
