Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40711.t1 | XP_013462044.1 | 98.7 | 232 | 3 | 0 | 1 | 232 | 1 | 232 | 7.90E-130 | 473 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40711.t1 | Q9XI47 | 44.4 | 248 | 107 | 4 | 12 | 230 | 11 | 256 | 1.8e-50 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40711.t1 | A0A072V207 | 98.7 | 232 | 3 | 0 | 1 | 232 | 1 | 232 | 5.7e-130 | 473.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene40711 | 0.863447 | 2.47E-64 | -1.69E-46 |
| MS.gene049283 | MS.gene40711 | 0.81061 | 1.06E-50 | -1.69E-46 |
| MS.gene049343 | MS.gene40711 | 0.823024 | 1.73E-53 | -1.69E-46 |
| MS.gene049567 | MS.gene40711 | 0.807195 | 5.69E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene40711 | 0.80363 | 3.18E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene40711 | 0.802688 | 4.98E-49 | -1.69E-46 |
| MS.gene04973 | MS.gene40711 | 0.809687 | 1.67E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene40711 | 0.822956 | 1.79E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene40711 | 0.84642 | 2.20E-59 | -1.69E-46 |
| MS.gene049863 | MS.gene40711 | 0.805175 | 1.52E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene40711 | 0.837229 | 5.88E-57 | -1.69E-46 |
| MS.gene050026 | MS.gene40711 | 0.802563 | 5.29E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene40711 | 0.818846 | 1.58E-52 | -1.69E-46 |
| MS.gene050355 | MS.gene40711 | 0.837595 | 4.74E-57 | -1.69E-46 |
| MS.gene050559 | MS.gene40711 | 0.854957 | 8.71E-62 | -1.69E-46 |
| MS.gene050561 | MS.gene40711 | 0.844264 | 8.42E-59 | -1.69E-46 |
| MS.gene050562 | MS.gene40711 | 0.834635 | 2.68E-56 | -1.69E-46 |
| MS.gene050828 | MS.gene40711 | 0.813947 | 1.98E-51 | -1.69E-46 |
| MS.gene051332 | MS.gene40711 | 0.81404 | 1.89E-51 | -1.69E-46 |
| MS.gene051363 | MS.gene40711 | 0.818653 | 1.75E-52 | -1.69E-46 |
| MS.gene051597 | MS.gene40711 | 0.845169 | 4.80E-59 | -1.69E-46 |
| MS.gene051678 | MS.gene40711 | 0.811615 | 6.41E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene40711 | 0.870969 | 9.76E-67 | -1.69E-46 |
| MS.gene051832 | MS.gene40711 | 0.834175 | 3.49E-56 | -1.69E-46 |
| MS.gene051957 | MS.gene40711 | 0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene40711 | 0.830653 | 2.60E-55 | -1.69E-46 |
| MS.gene052108 | MS.gene40711 | 0.807868 | 4.10E-50 | -1.69E-46 |
| MS.gene052208 | MS.gene40711 | 0.812013 | 5.25E-51 | -1.69E-46 |
| MS.gene052500 | MS.gene40711 | 0.827514 | 1.50E-54 | -1.69E-46 |
| MS.gene052502 | MS.gene40711 | 0.817318 | 3.51E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene40711 | 0.822651 | 2.11E-53 | -1.69E-46 |
| MS.gene052533 | MS.gene40711 | 0.802851 | 4.61E-49 | -1.69E-46 |
| MS.gene052534 | MS.gene40711 | 0.804997 | 1.65E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene40711 | 0.850688 | 1.44E-60 | -1.69E-46 |
| MS.gene052584 | MS.gene40711 | 0.851109 | 1.10E-60 | -1.69E-46 |
| MS.gene052586 | MS.gene40711 | 0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene052685 | MS.gene40711 | 0.823772 | 1.16E-53 | -1.69E-46 |
| MS.gene052717 | MS.gene40711 | 0.806863 | 6.69E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene40711 | 0.806385 | 8.44E-50 | -1.69E-46 |
| MS.gene052826 | MS.gene40711 | 0.826019 | 3.41E-54 | -1.69E-46 |
| MS.gene052889 | MS.gene40711 | 0.802068 | 6.69E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene40711 | 0.826788 | 2.24E-54 | -1.69E-46 |
| MS.gene053006 | MS.gene40711 | 0.84668 | 1.87E-59 | -1.69E-46 |
| MS.gene053226 | MS.gene40711 | 0.858424 | 8.32E-63 | -1.69E-46 |
| MS.gene053294 | MS.gene40711 | 0.828802 | 7.34E-55 | -1.69E-46 |
| MS.gene05365 | MS.gene40711 | 0.833805 | 4.32E-56 | -1.69E-46 |
| MS.gene053931 | MS.gene40711 | 0.807667 | 4.52E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene40711 | 0.836703 | 8.01E-57 | -1.69E-46 |
| MS.gene053995 | MS.gene40711 | 0.835312 | 1.81E-56 | -1.69E-46 |
| MS.gene054222 | MS.gene40711 | 0.821889 | 3.18E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene40711 | 0.843297 | 1.53E-58 | -1.69E-46 |
| MS.gene054651 | MS.gene40711 | 0.846778 | 1.75E-59 | -1.69E-46 |
| MS.gene054657 | MS.gene40711 | 0.818797 | 1.62E-52 | -1.69E-46 |
| MS.gene055166 | MS.gene40711 | 0.828708 | 7.74E-55 | -1.69E-46 |
| MS.gene055374 | MS.gene40711 | 0.807336 | 5.31E-50 | -1.69E-46 |
| MS.gene05548 | MS.gene40711 | 0.81045 | 1.15E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene40711 | 0.809307 | 2.02E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene40711 | 0.909823 | 3.72E-82 | -1.69E-46 |
| MS.gene055589 | MS.gene40711 | 0.866332 | 3.08E-65 | -1.69E-46 |
| MS.gene055778 | MS.gene40711 | 0.813197 | 2.89E-51 | -1.69E-46 |
| MS.gene055801 | MS.gene40711 | 0.802941 | 4.42E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene40711 | 0.836541 | 8.81E-57 | -1.69E-46 |
| MS.gene055818 | MS.gene40711 | 0.804874 | 1.75E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene40711 | 0.852562 | 4.25E-61 | -1.69E-46 |
| MS.gene056050 | MS.gene40711 | 0.81053 | 1.10E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene40711 | 0.831131 | 1.99E-55 | -1.69E-46 |
| MS.gene056162 | MS.gene40711 | 0.805191 | 1.50E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene40711 | 0.832725 | 8.02E-56 | -1.69E-46 |
| MS.gene056403 | MS.gene40711 | 0.813143 | 2.97E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene40711 | 0.821403 | 4.11E-53 | -1.69E-46 |
| MS.gene05659 | MS.gene40711 | 0.811818 | 5.79E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene40711 | 0.809927 | 1.49E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene40711 | 0.809848 | 1.54E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene40711 | 0.812325 | 4.49E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene40711 | 0.834334 | 3.18E-56 | -1.69E-46 |
| MS.gene05689 | MS.gene40711 | 0.816036 | 6.80E-52 | -1.69E-46 |
| MS.gene05690 | MS.gene40711 | 0.805839 | 1.10E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene40711 | 0.844666 | 6.56E-59 | -1.69E-46 |
| MS.gene057026 | MS.gene40711 | 0.838225 | 3.26E-57 | -1.69E-46 |
| MS.gene057027 | MS.gene40711 | 0.800141 | 1.66E-48 | -1.69E-46 |
| MS.gene057034 | MS.gene40711 | 0.802763 | 4.81E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene40711 | 0.800135 | 1.66E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene40711 | 0.83588 | 1.30E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene40711 | 0.837725 | 4.39E-57 | -1.69E-46 |
| MS.gene057598 | MS.gene40711 | 0.805735 | 1.16E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene40711 | 0.821681 | 3.55E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene40711 | 0.81242 | 4.28E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene40711 | 0.821123 | 4.77E-53 | -1.69E-46 |
| MS.gene058498 | MS.gene40711 | 0.834875 | 2.33E-56 | -1.69E-46 |
| MS.gene058500 | MS.gene40711 | 0.812788 | 3.55E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene40711 | 0.812869 | 3.41E-51 | -1.69E-46 |
| MS.gene058635 | MS.gene40711 | 0.805566 | 1.25E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene40711 | 0.804142 | 2.49E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene40711 | 0.812842 | 3.46E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene40711 | 0.833124 | 6.38E-56 | -1.69E-46 |
| MS.gene05950 | MS.gene40711 | 0.820752 | 5.81E-53 | -1.69E-46 |
| MS.gene05952 | MS.gene40711 | 0.804763 | 1.85E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene40711 | 0.8286 | 8.22E-55 | -1.69E-46 |
| MS.gene059625 | MS.gene40711 | 0.806298 | 8.81E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene40711 | -0.846795 | 1.74E-59 | -1.69E-46 |
| MS.gene059935 | MS.gene40711 | 0.883366 | 4.77E-71 | -1.69E-46 |
| MS.gene060365 | MS.gene40711 | 0.852193 | 5.42E-61 | -1.69E-46 |
| MS.gene060429 | MS.gene40711 | 0.81794 | 2.54E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene40711 | 0.830488 | 2.86E-55 | -1.69E-46 |
| MS.gene060572 | MS.gene40711 | 0.831848 | 1.32E-55 | -1.69E-46 |
| MS.gene060586 | MS.gene40711 | 0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene40711 | 0.811419 | 7.07E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene40711 | 0.827428 | 1.57E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene40711 | 0.834657 | 2.64E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene40711 | 0.828335 | 9.52E-55 | -1.69E-46 |
| MS.gene06094 | MS.gene40711 | 0.805879 | 1.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40711.t1 | MTR_3g110260 | 98.707 | 232 | 3 | 0 | 1 | 232 | 1 | 232 | 2.77e-174 | 478 |
| MS.gene40711.t1 | MTR_8g061040 | 40.076 | 262 | 125 | 4 | 1 | 232 | 1 | 260 | 3.43e-65 | 206 |
| MS.gene40711.t1 | MTR_8g014075 | 39.095 | 243 | 126 | 3 | 8 | 230 | 7 | 247 | 1.14e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40711.t1 | AT1G15215 | 44.355 | 248 | 107 | 4 | 12 | 230 | 11 | 256 | 7.55e-66 | 204 |
| MS.gene40711.t1 | AT3G18380 | 39.068 | 279 | 118 | 4 | 1 | 232 | 1 | 274 | 1.50e-61 | 196 |
| MS.gene40711.t1 | AT1G15215 | 44.118 | 238 | 102 | 4 | 12 | 220 | 11 | 246 | 3.75e-61 | 192 |
| MS.gene40711.t1 | AT1G15215 | 43.802 | 242 | 105 | 4 | 12 | 224 | 11 | 250 | 8.28e-61 | 191 |
| MS.gene40711.t1 | AT3G18380 | 38.929 | 280 | 118 | 5 | 1 | 232 | 1 | 275 | 1.02e-59 | 192 |
| MS.gene40711.t1 | AT3G18380 | 39.416 | 274 | 122 | 7 | 1 | 232 | 1 | 272 | 7.62e-59 | 189 |
| MS.gene40711.t1 | AT1G15215 | 35.484 | 155 | 69 | 4 | 12 | 137 | 11 | 163 | 1.79e-18 | 79.7 |
Find 45 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTCAGATTGAGAAAA+TGG | 0.159542 | 3.2:-88403100 | MS.gene40711:intron |
| GAACATAGTCTCCAACTTTC+AGG | 0.226239 | 3.2:+88401113 | None:intergenic |
| GAAAACAGACTTGAAACTTT+TGG | 0.264857 | 3.2:+88403014 | None:intergenic |
| CGAAAGGAACTGAGCGTTCC+CGG | 0.320535 | 3.2:+88401155 | None:intergenic |
| AGAGTCAGATTTGTTGGGTT+TGG | 0.339869 | 3.2:-88401217 | MS.gene40711:CDS |
| AGCTTATCATCTGGTCGTGC+TGG | 0.372792 | 3.2:-88402919 | MS.gene40711:CDS |
| AGACTATGTTCTGTGCTTCC+AGG | 0.376950 | 3.2:-88401101 | MS.gene40711:intron |
| AAAAGTACCTCAAAATGAAT+TGG | 0.377374 | 3.2:-88402714 | MS.gene40711:CDS |
| GGATATCATGCATTCTCCTT+TGG | 0.380382 | 3.2:+88400949 | None:intergenic |
| GAAGTCAGAGTCAGATTTGT+TGG | 0.404906 | 3.2:-88401223 | MS.gene40711:CDS |
| AAATGTGACACCTGCAACCT+CGG | 0.422569 | 3.2:+88400928 | None:intergenic |
| CTGGGAAACCTGTCATCAAA+TGG | 0.437508 | 3.2:-88402900 | MS.gene40711:CDS |
| GTCATGTATATCTAAGATCT+TGG | 0.438432 | 3.2:+88400756 | None:intergenic |
| GTAGGAAGGTACCTCAGAAT+TGG | 0.440658 | 3.2:+88403186 | None:intergenic |
| ACCTGAGTCCATTTGATGAC+AGG | 0.456466 | 3.2:+88402892 | None:intergenic |
| TTCCAACTCTGATGAGTCTC+GGG | 0.471097 | 3.2:+88402232 | None:intergenic |
| AAGTCAGAGTCAGATTTGTT+GGG | 0.473120 | 3.2:-88401222 | MS.gene40711:CDS |
| TTGTCTTGTAGCTTATCATC+TGG | 0.483456 | 3.2:-88402928 | MS.gene40711:intron |
| CTCTGACCTTCCTTGCATTG+AGG | 0.498752 | 3.2:+88402686 | None:intergenic |
| GCACACAGATTTCTTAGCAC+AGG | 0.502053 | 3.2:-88401341 | MS.gene40711:CDS |
| CACACAGATTTCTTAGCACA+GGG | 0.505636 | 3.2:-88401340 | MS.gene40711:CDS |
| TTGCTAAGGGAATCATCAAA+AGG | 0.520977 | 3.2:-88403072 | MS.gene40711:CDS |
| ATTCCAACTCTGATGAGTCT+CGG | 0.521550 | 3.2:+88402231 | None:intergenic |
| CTCAGTTCCTTTCGAGAACA+CGG | 0.527058 | 3.2:-88401146 | MS.gene40711:CDS |
| ATTTGTTGGGTTTGGAGCTG+AGG | 0.536262 | 3.2:-88401209 | MS.gene40711:CDS |
| TGCATGATATCCGAGGTTGC+AGG | 0.537901 | 3.2:-88400938 | MS.gene40711:CDS |
| GCATATGTGCTCACCATGCT+TGG | 0.545702 | 3.2:+88402186 | None:intergenic |
| CACCCGAGACTCATCAGAGT+TGG | 0.547609 | 3.2:-88402234 | MS.gene40711:CDS |
| GCTTATCATCTGGTCGTGCT+GGG | 0.552961 | 3.2:-88402918 | MS.gene40711:CDS |
| TTCTGGATTCACCAATTCTG+AGG | 0.559706 | 3.2:-88403197 | MS.gene40711:intron |
| GAGTGTTCCAACCTGAAAGT+TGG | 0.564740 | 3.2:-88401124 | MS.gene40711:CDS |
| ATAGTCTCCAACTTTCAGGT+TGG | 0.570305 | 3.2:+88401117 | None:intergenic |
| ATTGGTTTCTCCTCAATGCA+AGG | 0.583252 | 3.2:-88402696 | MS.gene40711:CDS |
| TCTAGGAAAGAGTTCGCTTG+AGG | 0.588698 | 3.2:-88400794 | MS.gene40711:intron |
| GAACACTCCGTGTTCTCGAA+AGG | 0.592495 | 3.2:+88401139 | None:intergenic |
| ACCTGTCATCAAATGGACTC+AGG | 0.592515 | 3.2:-88402893 | MS.gene40711:intron |
| CTCACATTGTAGAGATCCAA+AGG | 0.594628 | 3.2:-88400965 | MS.gene40711:CDS |
| TGGAGCTGAGGAAGATGAGT+GGG | 0.595934 | 3.2:-88401197 | MS.gene40711:CDS |
| GATCTTCGAAAGACCAAGCA+TGG | 0.600049 | 3.2:-88402199 | MS.gene40711:intron |
| GTTTCTCCTCAATGCAAGGA+AGG | 0.620933 | 3.2:-88402692 | MS.gene40711:intron |
| ATATCTAAGATCTTGGTCTG+TGG | 0.670538 | 3.2:+88400763 | None:intergenic |
| TTGGAGCTGAGGAAGATGAG+TGG | 0.671942 | 3.2:-88401198 | MS.gene40711:CDS |
| AGGAGAATGCATGATATCCG+AGG | 0.689625 | 3.2:-88400945 | MS.gene40711:CDS |
| ACACAGATTTCTTAGCACAG+GGG | 0.750555 | 3.2:-88401339 | MS.gene40711:CDS |
| ATATGATCACGACAACAACG+AGG | 0.764532 | 3.2:-88400898 | MS.gene40711:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATTTAATGATTTAGT+TGG | + | chr3.2:88402507-88402526 | None:intergenic | 15.0% |
| !! | ATATAATTGTAAAAACTTAC+AGG | + | chr3.2:88402688-88402707 | None:intergenic | 15.0% |
| !! | ATATATACAACTTAAATGAA+TGG | + | chr3.2:88402371-88402390 | None:intergenic | 15.0% |
| !! | CTAACTAAATAAAAAAGTAA+AGG | + | chr3.2:88401652-88401671 | None:intergenic | 15.0% |
| !! | TAAAAAATAACAATTTAGTG+TGG | + | chr3.2:88401966-88401985 | None:intergenic | 15.0% |
| !! | TAAAATTCCCATAAAAATAA+AGG | + | chr3.2:88401226-88401245 | None:intergenic | 15.0% |
| !! | TTATGGTTTATAGTTAAAAT+TGG | + | chr3.2:88402426-88402445 | None:intergenic | 15.0% |
| !!! | AATTGTTCCTTTATTTTTAT+GGG | - | chr3.2:88401216-88401235 | MS.gene40711:CDS | 15.0% |
| !!! | TAATTGTTCCTTTATTTTTA+TGG | - | chr3.2:88401215-88401234 | MS.gene40711:CDS | 15.0% |
| !!! | TTTTCTTTTTGTTATATTCT+AGG | - | chr3.2:88403188-88403207 | MS.gene40711:intron | 15.0% |
| !! | AAATGTTTAATGCATAATTG+AGG | + | chr3.2:88402099-88402118 | None:intergenic | 20.0% |
| !! | ATTATAAATCACACATGAAA+TGG | + | chr3.2:88403159-88403178 | None:intergenic | 20.0% |
| !! | CTGAAATGAAATAAGATTAA+AGG | + | chr3.2:88400889-88400908 | None:intergenic | 20.0% |
| !! | TGAAATAAGATTAAAGGTAA+CGG | + | chr3.2:88400883-88400902 | None:intergenic | 20.0% |
| !!! | AACTTTTTCACATCTATAAT+AGG | - | chr3.2:88402151-88402170 | MS.gene40711:intron | 20.0% |
| !!! | ATTTTTTAGCATGTATGATA+CGG | + | chr3.2:88402244-88402263 | None:intergenic | 20.0% |
| !!! | TAAATTTTAATGTCACTGAA+AGG | - | chr3.2:88401892-88401911 | MS.gene40711:intron | 20.0% |
| !!! | TAATTAAAAGTGCATTTCAA+AGG | + | chr3.2:88401197-88401216 | None:intergenic | 20.0% |
| ! | AACAAAGAAACAATGATTGA+GGG | + | chr3.2:88401012-88401031 | None:intergenic | 25.0% |
| ! | AAGATTCTTTGACTAAAATC+TGG | - | chr3.2:88402336-88402355 | MS.gene40711:intron | 25.0% |
| ! | AGAAAATGGAAAAATTGCTA+AGG | - | chr3.2:88400913-88400932 | MS.gene40711:CDS | 25.0% |
| ! | AGAGAGTAAAAGAAAAAAGT+AGG | + | chr3.2:88400834-88400853 | None:intergenic | 25.0% |
| ! | AGTAAAAGAAAAAAGTAGGA+AGG | + | chr3.2:88400830-88400849 | None:intergenic | 25.0% |
| ! | ATACATGCTAAAAAATTGTG+AGG | - | chr3.2:88402248-88402267 | MS.gene40711:intron | 25.0% |
| ! | ATGAAGCTATAAACAATCTA+TGG | + | chr3.2:88402018-88402037 | None:intergenic | 25.0% |
| ! | ATGTAATTTACTTCAGAATG+CGG | - | chr3.2:88401469-88401488 | MS.gene40711:intron | 25.0% |
| ! | CCATAAAACAGATAGTATAT+AGG | - | chr3.2:88402440-88402459 | MS.gene40711:intron | 25.0% |
| ! | GAAAATGGAAAAATTGCTAA+GGG | - | chr3.2:88400914-88400933 | MS.gene40711:CDS | 25.0% |
| ! | GTAGTATTCAGTTAATTATC+TGG | - | chr3.2:88402187-88402206 | MS.gene40711:intron | 25.0% |
| ! | GTTGTATATATGTATATGTG+TGG | - | chr3.2:88402380-88402399 | MS.gene40711:intron | 25.0% |
| ! | TCAACATAAAAAATTCAGTC+CGG | - | chr3.2:88402825-88402844 | MS.gene40711:intron | 25.0% |
| ! | TTCATTTCAGATTGAGAAAA+TGG | - | chr3.2:88400899-88400918 | MS.gene40711:CDS | 25.0% |
| !! | CCTATATACTATCTGTTTTA+TGG | + | chr3.2:88402443-88402462 | None:intergenic | 25.0% |
| !! | CTTTTATAACTATACATGGA+TGG | - | chr3.2:88402311-88402330 | MS.gene40711:intron | 25.0% |
| !! | TCGTCTTTTATAACTATACA+TGG | - | chr3.2:88402307-88402326 | MS.gene40711:intron | 25.0% |
| !!! | AAAAGTACCTCAAAATGAAT+TGG | - | chr3.2:88401285-88401304 | MS.gene40711:intron | 25.0% |
| !!! | AATTCATTTTGAGGTACTTT+TGG | + | chr3.2:88401286-88401305 | None:intergenic | 25.0% |
| !!! | ATGTTAAACTGCATTGATTA+TGG | - | chr3.2:88401519-88401538 | MS.gene40711:intron | 25.0% |
| !!! | GTAAGAGTTTTGAAAATCAT+TGG | + | chr3.2:88402482-88402501 | None:intergenic | 25.0% |
| !!! | TAGTTTTTGGTAAAAATCGA+GGG | + | chr3.2:88400964-88400983 | None:intergenic | 25.0% |
| !!! | TTTTTTAGCATGTATGATAC+GGG | + | chr3.2:88402243-88402262 | None:intergenic | 25.0% |
| AAAATCTAGTACACCCTATA+AGG | + | chr3.2:88402725-88402744 | None:intergenic | 30.0% | |
| AAATCTAGTACACCCTATAA+GGG | + | chr3.2:88402724-88402743 | None:intergenic | 30.0% | |
| AACTATCCTAACAACGTTTA+AGG | + | chr3.2:88401350-88401369 | None:intergenic | 30.0% | |
| AAGTAAAGGAAAACAGAAAG+TGG | + | chr3.2:88401638-88401657 | None:intergenic | 30.0% | |
| AATCATTGGAGGAAGAAAAT+TGG | + | chr3.2:88402468-88402487 | None:intergenic | 30.0% | |
| ACATTACCTTAAACGTTGTT+AGG | - | chr3.2:88401341-88401360 | MS.gene40711:CDS | 30.0% | |
| AGTAAAGGAAAACAGAAAGT+GGG | + | chr3.2:88401637-88401656 | None:intergenic | 30.0% | |
| ATATATGCAGAATTCACGAA+TGG | + | chr3.2:88401863-88401882 | None:intergenic | 30.0% | |
| CAACAAAGAAACAATGATTG+AGG | + | chr3.2:88401013-88401032 | None:intergenic | 30.0% | |
| CAACATAAAAAATTCAGTCC+GGG | - | chr3.2:88402826-88402845 | MS.gene40711:intron | 30.0% | |
| TACAATTTGTCCAAGTCTAA+AGG | - | chr3.2:88402603-88402622 | MS.gene40711:intron | 30.0% | |
| TCCTGTGTATTTCAATGTTT+GGG | - | chr3.2:88401404-88401423 | MS.gene40711:intron | 30.0% | |
| TTAAACGTTGTTAGGATAGT+TGG | - | chr3.2:88401349-88401368 | MS.gene40711:CDS | 30.0% | |
| TTGGTGAATCCAGAAAAAAT+AGG | + | chr3.2:88400797-88400816 | None:intergenic | 30.0% | |
| ! | AACAACGTTTAAGGTAATGT+AGG | + | chr3.2:88401341-88401360 | None:intergenic | 30.0% |
| ! | AACAGTTTCTCCTTTTGTAA+AGG | - | chr3.2:88402754-88402773 | MS.gene40711:CDS | 30.0% |
| ! | ATCATTGTTTCTTTGTTGGT+CGG | - | chr3.2:88401015-88401034 | MS.gene40711:intron | 30.0% |
| ! | CTCAATCATTGTTTCTTTGT+TGG | - | chr3.2:88401011-88401030 | MS.gene40711:intron | 30.0% |
| ! | GAAAACAGACTTGAAACTTT+TGG | + | chr3.2:88400988-88401007 | None:intergenic | 30.0% |
| ! | GACAGTTTCAATGTGTTTTT+AGG | - | chr3.2:88402981-88403000 | MS.gene40711:intron | 30.0% |
| ! | GGGAATTTTAGATACATAGT+TGG | - | chr3.2:88401236-88401255 | MS.gene40711:intron | 30.0% |
| !!! | AGAGTTTTGAAAATCATTGG+AGG | + | chr3.2:88402479-88402498 | None:intergenic | 30.0% |
| !!! | CTAGTTTTTGGTAAAAATCG+AGG | + | chr3.2:88400965-88400984 | None:intergenic | 30.0% |
| !!! | CTTCAATGCCATTTTTACTT+TGG | - | chr3.2:88401988-88402007 | MS.gene40711:intron | 30.0% |
| !!! | GTTTTAAGAAAATGACACCA+AGG | - | chr3.2:88401558-88401577 | MS.gene40711:intron | 30.0% |
| !!! | TGAAACTTTTGGCTAGTTTT+TGG | + | chr3.2:88400977-88400996 | None:intergenic | 30.0% |
| !!! | TTTCAATGTGTTTTTAGGAG+AGG | - | chr3.2:88402986-88403005 | MS.gene40711:intron | 30.0% |
| AAACTTTGACCTAAATCACC+TGG | + | chr3.2:88402919-88402938 | None:intergenic | 35.0% | |
| AAAGGAGAAACTGTTTAAGC+TGG | + | chr3.2:88402749-88402768 | None:intergenic | 35.0% | |
| AATCTAGTACACCCTATAAG+GGG | + | chr3.2:88402723-88402742 | None:intergenic | 35.0% | |
| ACATTGAAATACACAGGACA+AGG | + | chr3.2:88401402-88401421 | None:intergenic | 35.0% | |
| ACTCTGACTTCCTTTACAAA+AGG | + | chr3.2:88402767-88402786 | None:intergenic | 35.0% | |
| ATGGACCACCAAAGTAAAAA+TGG | + | chr3.2:88401999-88402018 | None:intergenic | 35.0% | |
| ATTTCAATGTTTGGGCCTTT+AGG | - | chr3.2:88401412-88401431 | MS.gene40711:intron | 35.0% | |
| CAGTTAATTATCTGGTGTTC+TGG | - | chr3.2:88402195-88402214 | MS.gene40711:intron | 35.0% | |
| CTCAAATATTTGCGAACACA+AGG | + | chr3.2:88401681-88401700 | None:intergenic | 35.0% | |
| GAAAAAATAGGTCTGTTACG+AGG | + | chr3.2:88400785-88400804 | None:intergenic | 35.0% | |
| GATGTCCTTTAACTGTTCTA+TGG | + | chr3.2:88402947-88402966 | None:intergenic | 35.0% | |
| GTCCTGTGTATTTCAATGTT+TGG | - | chr3.2:88401403-88401422 | MS.gene40711:intron | 35.0% | |
| TTCATAGCTTTCCCCTTATA+GGG | - | chr3.2:88402709-88402728 | MS.gene40711:CDS | 35.0% | |
| TTGCTAAGGGAATCATCAAA+AGG | - | chr3.2:88400927-88400946 | MS.gene40711:CDS | 35.0% | |
| TTGTCTTGTAGCTTATCATC+TGG | - | chr3.2:88401071-88401090 | MS.gene40711:intron | 35.0% | |
| TTTCAATGTTTGGGCCTTTA+GGG | - | chr3.2:88401413-88401432 | MS.gene40711:intron | 35.0% | |
| ! | AAGTCAGAGTCAGATTTGTT+GGG | - | chr3.2:88402777-88402796 | MS.gene40711:intron | 35.0% |
| ! | ATTTTCGACAATGACATCAG+TGG | - | chr3.2:88402568-88402587 | MS.gene40711:intron | 35.0% |
| ! | GGAGAAACCAATTCATTTTG+AGG | + | chr3.2:88401295-88401314 | None:intergenic | 35.0% |
| ! | TGTGGATTAATATCAGCATG+TGG | + | chr3.2:88401948-88401967 | None:intergenic | 35.0% |
| !!! | CAATGCCATTTTTACTTTGG+TGG | - | chr3.2:88401991-88402010 | MS.gene40711:intron | 35.0% |
| !!! | CGTAACAGACCTATTTTTTC+TGG | - | chr3.2:88400785-88400804 | MS.gene40711:CDS | 35.0% |
| !!! | GTCTGAAATGAGTTTTTTGC+AGG | - | chr3.2:88401736-88401755 | MS.gene40711:intron | 35.0% |
| !!! | TGGGTGTTATTTCTGCATTT+TGG | - | chr3.2:88403124-88403143 | MS.gene40711:intron | 35.0% |
| ACACAGATTTCTTAGCACAG+GGG | - | chr3.2:88402660-88402679 | MS.gene40711:intron | 40.0% | |
| AGAAAATGACACCAAGGACA+AGG | - | chr3.2:88401564-88401583 | MS.gene40711:intron | 40.0% | |
| AGCAATGAGGGACTATCAAA+AGG | - | chr3.2:88401599-88401618 | MS.gene40711:intron | 40.0% | |
| ATATGATCACGACAACAACG+AGG | - | chr3.2:88403101-88403120 | MS.gene40711:intron | 40.0% | |
| ATTCCAACTCTGATGAGTCT+CGG | + | chr3.2:88401771-88401790 | None:intergenic | 40.0% | |
| CACACAGATTTCTTAGCACA+GGG | - | chr3.2:88402659-88402678 | MS.gene40711:intron | 40.0% | |
| CCTCACCATAGAACAGTTAA+AGG | - | chr3.2:88402939-88402958 | MS.gene40711:intron | 40.0% | |
| CCTTTAACTGTTCTATGGTG+AGG | + | chr3.2:88402942-88402961 | None:intergenic | 40.0% | |
| CTCACATTGTAGAGATCCAA+AGG | - | chr3.2:88403034-88403053 | MS.gene40711:CDS | 40.0% | |
| GAACATAGTCTCCAACTTTC+AGG | + | chr3.2:88402889-88402908 | None:intergenic | 40.0% | |
| GAAGTCAGAGTCAGATTTGT+TGG | - | chr3.2:88402776-88402795 | MS.gene40711:intron | 40.0% | |
| GCCCAAACATTGAAATACAC+AGG | + | chr3.2:88401408-88401427 | None:intergenic | 40.0% | |
| GGATATCATGCATTCTCCTT+TGG | + | chr3.2:88403053-88403072 | None:intergenic | 40.0% | |
| GTTCATAGCTTTCCCCTTAT+AGG | - | chr3.2:88402708-88402727 | MS.gene40711:CDS | 40.0% | |
| TTAAACCAGCACTTCTAGTG+AGG | - | chr3.2:88401709-88401728 | MS.gene40711:intron | 40.0% | |
| TTCTGGATTCACCAATTCTG+AGG | - | chr3.2:88400802-88400821 | MS.gene40711:intron | 40.0% | |
| ! | ATAGTCTCCAACTTTCAGGT+TGG | + | chr3.2:88402885-88402904 | None:intergenic | 40.0% |
| ! | ATTGGTTTCTCCTCAATGCA+AGG | - | chr3.2:88401303-88401322 | MS.gene40711:intron | 40.0% |
| ! | CATATCTGAAGTGACCCTAA+AGG | + | chr3.2:88401430-88401449 | None:intergenic | 40.0% |
| ! | TGTGGTGTGTTTCAAGTGAA+AGG | - | chr3.2:88402398-88402417 | MS.gene40711:intron | 40.0% |
| !! | AGAGTCAGATTTGTTGGGTT+TGG | - | chr3.2:88402782-88402801 | MS.gene40711:intron | 40.0% |
| AAATGTGACACCTGCAACCT+CGG | + | chr3.2:88403074-88403093 | None:intergenic | 45.0% | |
| AAGTGACTGGGAAGCAATGA+GGG | - | chr3.2:88401587-88401606 | MS.gene40711:intron | 45.0% | |
| AGACTATGTTCTGTGCTTCC+AGG | - | chr3.2:88402898-88402917 | MS.gene40711:CDS | 45.0% | |
| AGGAGAATGCATGATATCCG+AGG | - | chr3.2:88403054-88403073 | MS.gene40711:CDS | 45.0% | |
| CACTGATCTCACTGTATTCC+TGG | - | chr3.2:88402038-88402057 | MS.gene40711:intron | 45.0% | |
| CTCAGTTCCTTTCGAGAACA+CGG | - | chr3.2:88402853-88402872 | MS.gene40711:intron | 45.0% | |
| CTGCAGCAAACCTTTAGACT+TGG | + | chr3.2:88402616-88402635 | None:intergenic | 45.0% | |
| CTGGGAAACCTGTCATCAAA+TGG | - | chr3.2:88401099-88401118 | MS.gene40711:intron | 45.0% | |
| GAGTGTTCCAACCTGAAAGT+TGG | - | chr3.2:88402875-88402894 | MS.gene40711:intron | 45.0% | |
| GATCTTCGAAAGACCAAGCA+TGG | - | chr3.2:88401800-88401819 | MS.gene40711:intron | 45.0% | |
| GCACACAGATTTCTTAGCAC+AGG | - | chr3.2:88402658-88402677 | MS.gene40711:intron | 45.0% | |
| GTTTCTCCTCAATGCAAGGA+AGG | - | chr3.2:88401307-88401326 | MS.gene40711:intron | 45.0% | |
| TCTAGGAAAGAGTTCGCTTG+AGG | - | chr3.2:88403205-88403224 | MS.gene40711:CDS | 45.0% | |
| TCTGTGCTTCCAGGTGATTT+AGG | - | chr3.2:88402907-88402926 | MS.gene40711:CDS | 45.0% | |
| TTCCAACTCTGATGAGTCTC+GGG | + | chr3.2:88401770-88401789 | None:intergenic | 45.0% | |
| TTGCCTAGTCGTAGACATAC+AGG | - | chr3.2:88402539-88402558 | MS.gene40711:intron | 45.0% | |
| ! | ACCTGAGTCCATTTGATGAC+AGG | + | chr3.2:88401110-88401129 | None:intergenic | 45.0% |
| ! | ACCTGTCATCAAATGGACTC+AGG | - | chr3.2:88401106-88401125 | MS.gene40711:CDS | 45.0% |
| ! | ATTTGTTGGGTTTGGAGCTG+AGG | - | chr3.2:88402790-88402809 | MS.gene40711:intron | 45.0% |
| ! | TGTCAAATCGAAAGCATGCC+AGG | + | chr3.2:88402059-88402078 | None:intergenic | 45.0% |
| !! | CAAGTCTAAAGGTTTGCTGC+AGG | - | chr3.2:88402614-88402633 | MS.gene40711:intron | 45.0% |
| !! | GAAGTGCTGGTTTAAGCAGT+TGG | + | chr3.2:88401704-88401723 | None:intergenic | 45.0% |
| !! | GAGGTACTTTTGGTGAGTCT+TGG | + | chr3.2:88401276-88401295 | None:intergenic | 45.0% |
| !! | GTAGGAAGGTACCTCAGAAT+TGG | + | chr3.2:88400816-88400835 | None:intergenic | 45.0% |
| ACCAAGGACAAGGAAGTGAC+TGG | - | chr3.2:88401574-88401593 | MS.gene40711:intron | 50.0% | |
| AGCTTATCATCTGGTCGTGC+TGG | - | chr3.2:88401080-88401099 | MS.gene40711:intron | 50.0% | |
| CCAAGGACAAGGAAGTGACT+GGG | - | chr3.2:88401575-88401594 | MS.gene40711:intron | 50.0% | |
| CTCTGACCTTCCTTGCATTG+AGG | + | chr3.2:88401316-88401335 | None:intergenic | 50.0% | |
| GAACACTCCGTGTTCTCGAA+AGG | + | chr3.2:88402863-88402882 | None:intergenic | 50.0% | |
| GAAGTGACTGGGAAGCAATG+AGG | - | chr3.2:88401586-88401605 | MS.gene40711:intron | 50.0% | |
| GATCACGACAACAACGAGGT+GGG | - | chr3.2:88403105-88403124 | MS.gene40711:intron | 50.0% | |
| GCATATGTGCTCACCATGCT+TGG | + | chr3.2:88401816-88401835 | None:intergenic | 50.0% | |
| GCTTATCATCTGGTCGTGCT+GGG | - | chr3.2:88401081-88401100 | MS.gene40711:intron | 50.0% | |
| GTGCCTGTATGTCTACGACT+AGG | + | chr3.2:88402545-88402564 | None:intergenic | 50.0% | |
| TGATCACGACAACAACGAGG+TGG | - | chr3.2:88403104-88403123 | MS.gene40711:intron | 50.0% | |
| TGCATGATATCCGAGGTTGC+AGG | - | chr3.2:88403061-88403080 | MS.gene40711:CDS | 50.0% | |
| TGGAGCTGAGGAAGATGAGT+GGG | - | chr3.2:88402802-88402821 | MS.gene40711:intron | 50.0% | |
| TTGGAGCTGAGGAAGATGAG+TGG | - | chr3.2:88402801-88402820 | MS.gene40711:intron | 50.0% | |
| ! | CTCAACCTCACTAGAAGTGC+TGG | + | chr3.2:88401717-88401736 | None:intergenic | 50.0% |
| CACCCGAGACTCATCAGAGT+TGG | - | chr3.2:88401765-88401784 | MS.gene40711:intron | 55.0% | |
| CCCAGTCACTTCCTTGTCCT+TGG | + | chr3.2:88401578-88401597 | None:intergenic | 55.0% | |
| CGAAAGGAACTGAGCGTTCC+CGG | + | chr3.2:88402847-88402866 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 88400767 | 88403254 | 88400767 | ID=MS.gene40711 |
| chr3.2 | mRNA | 88400767 | 88403254 | 88400767 | ID=MS.gene40711.t1;Parent=MS.gene40711 |
| chr3.2 | exon | 88403198 | 88403254 | 88403198 | ID=MS.gene40711.t1.exon1;Parent=MS.gene40711.t1 |
| chr3.2 | CDS | 88403198 | 88403254 | 88403198 | ID=cds.MS.gene40711.t1;Parent=MS.gene40711.t1 |
| chr3.2 | exon | 88403024 | 88403112 | 88403024 | ID=MS.gene40711.t1.exon2;Parent=MS.gene40711.t1 |
| chr3.2 | CDS | 88403024 | 88403112 | 88403024 | ID=cds.MS.gene40711.t1;Parent=MS.gene40711.t1 |
| chr3.2 | exon | 88402894 | 88402939 | 88402894 | ID=MS.gene40711.t1.exon3;Parent=MS.gene40711.t1 |
| chr3.2 | CDS | 88402894 | 88402939 | 88402894 | ID=cds.MS.gene40711.t1;Parent=MS.gene40711.t1 |
| chr3.2 | exon | 88402693 | 88402774 | 88402693 | ID=MS.gene40711.t1.exon4;Parent=MS.gene40711.t1 |
| chr3.2 | CDS | 88402693 | 88402774 | 88402693 | ID=cds.MS.gene40711.t1;Parent=MS.gene40711.t1 |
| chr3.2 | exon | 88402200 | 88402263 | 88402200 | ID=MS.gene40711.t1.exon5;Parent=MS.gene40711.t1 |
| chr3.2 | CDS | 88402200 | 88402263 | 88402200 | ID=cds.MS.gene40711.t1;Parent=MS.gene40711.t1 |
| chr3.2 | exon | 88401334 | 88401385 | 88401334 | ID=MS.gene40711.t1.exon6;Parent=MS.gene40711.t1 |
| chr3.2 | CDS | 88401334 | 88401385 | 88401334 | ID=cds.MS.gene40711.t1;Parent=MS.gene40711.t1 |
| chr3.2 | exon | 88401102 | 88401245 | 88401102 | ID=MS.gene40711.t1.exon7;Parent=MS.gene40711.t1 |
| chr3.2 | CDS | 88401102 | 88401245 | 88401102 | ID=cds.MS.gene40711.t1;Parent=MS.gene40711.t1 |
| chr3.2 | exon | 88400899 | 88401018 | 88400899 | ID=MS.gene40711.t1.exon8;Parent=MS.gene40711.t1 |
| chr3.2 | CDS | 88400899 | 88401018 | 88400899 | ID=cds.MS.gene40711.t1;Parent=MS.gene40711.t1 |
| chr3.2 | exon | 88400767 | 88400811 | 88400767 | ID=MS.gene40711.t1.exon9;Parent=MS.gene40711.t1 |
| chr3.2 | CDS | 88400767 | 88400811 | 88400767 | ID=cds.MS.gene40711.t1;Parent=MS.gene40711.t1 |
| Gene Sequence |
| Protein sequence |
