AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93155


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93155.t1 MTR_1g029450 100.000 215 0 0 1 215 1 215 5.80e-161 443
MS.gene93155.t1 MTR_8g093740 85.990 207 28 1 7 213 3 208 3.82e-133 372
MS.gene93155.t1 MTR_3g096350 83.495 206 33 1 8 213 3 207 1.02e-127 358
MS.gene93155.t1 MTR_8g093740 85.799 169 23 1 45 213 8 175 4.45e-106 303
MS.gene93155.t1 MTR_7g103070 67.822 202 64 1 14 214 13 214 4.68e-104 299
MS.gene93155.t1 MTR_1g062760 66.500 200 67 0 14 213 11 210 3.89e-102 294
MS.gene93155.t1 MTR_1g090717 61.682 214 78 2 3 214 1 212 9.49e-92 268
MS.gene93155.t1 MTR_7g103070 68.153 157 50 0 58 214 2 158 1.23e-82 243
MS.gene93155.t1 MTR_3g096350 82.353 136 22 1 8 141 3 138 1.01e-78 233
MS.gene93155.t1 MTR_3g096350 85.938 128 18 0 8 135 3 130 1.52e-78 232
MS.gene93155.t1 MTR_7g081700 50.739 203 94 5 13 214 4 201 7.76e-59 184
MS.gene93155.t1 MTR_8g006970 56.000 175 74 3 13 186 4 176 6.82e-58 181
MS.gene93155.t1 MTR_2g005500 49.261 203 96 5 13 213 5 202 3.24e-57 180
MS.gene93155.t1 MTR_8g006970 50.249 201 95 4 15 214 20 216 1.80e-56 178
MS.gene93155.t1 MTR_1g068740 44.749 219 108 7 3 213 1 214 1.38e-54 174
MS.gene93155.t1 MTR_1g068730 44.292 219 109 7 3 213 1 214 4.51e-54 172
MS.gene93155.t1 MTR_1g115325 45.933 209 100 7 13 213 11 214 4.06e-53 170
MS.gene93155.t1 MTR_7g100020 49.438 178 82 5 13 184 11 186 8.55e-52 166
MS.gene93155.t1 MTR_8g031660 42.647 204 110 4 16 214 5 206 1.18e-51 166
MS.gene93155.t1 MTR_2g096550 43.350 203 112 3 13 213 11 212 3.04e-51 165
MS.gene93155.t1 MTR_6g021790 43.128 211 108 5 14 214 3 211 4.82e-51 164
MS.gene93155.t1 MTR_2g027660 42.925 212 107 6 14 214 3 211 6.71e-49 159
MS.gene93155.t1 MTR_6g079550 49.708 171 83 3 15 184 10 178 2.35e-48 158
MS.gene93155.t1 MTR_2g090865 45.455 209 105 6 13 214 7 213 6.60e-48 156
MS.gene93155.t1 MTR_4g063160 44.019 209 105 8 13 213 11 215 1.71e-47 155
MS.gene93155.t1 MTR_2g014990 40.553 217 105 6 13 214 9 216 4.97e-47 154
MS.gene93155.t1 MTR_8g031870 47.468 158 80 3 16 172 5 160 9.02e-47 153
MS.gene93155.t1 MTR_4g088090 40.092 217 106 6 13 214 9 216 1.22e-46 153
MS.gene93155.t1 MTR_2g083860 48.214 168 84 3 13 179 9 174 3.83e-46 152
MS.gene93155.t1 MTR_8g027220 46.429 168 87 3 13 179 22 187 7.08e-46 152
MS.gene93155.t1 MTR_2g005510 39.810 211 116 5 13 214 11 219 1.25e-45 151
MS.gene93155.t1 MTR_3g069510 39.524 210 117 5 13 214 8 215 1.51e-45 150
MS.gene93155.t1 MTR_4g079350 42.932 191 95 4 13 191 9 197 1.95e-45 150
MS.gene93155.t1 MTR_2g075950 45.833 168 88 3 13 179 9 174 5.22e-45 149
MS.gene93155.t1 MTR_7g051940 42.661 218 92 7 16 214 12 215 5.43e-45 149
MS.gene93155.t1 MTR_8g031680 40.385 208 113 5 16 214 5 210 7.03e-45 149
MS.gene93155.t1 MTR_8g089985 38.679 212 116 5 14 213 14 223 7.06e-45 149
MS.gene93155.t1 MTR_4g064897 38.278 209 120 5 13 214 8 214 8.56e-45 149
MS.gene93155.t1 MTR_3g086980 37.264 212 120 5 13 213 12 221 2.23e-44 148
MS.gene93155.t1 MTR_8g036220 41.667 216 108 6 15 214 14 227 4.91e-44 147
MS.gene93155.t1 MTR_1g068730 46.250 160 82 4 3 160 1 158 1.37e-43 144
MS.gene93155.t1 MTR_1g078200 41.026 195 103 4 15 208 12 195 1.98e-43 145
MS.gene93155.t1 MTR_1g068740 45.963 161 81 5 3 160 1 158 2.18e-43 144
MS.gene93155.t1 MTR_8g031830 40.000 200 113 5 16 214 5 198 9.47e-43 143
MS.gene93155.t1 MTR_0262s0050 42.262 168 94 3 13 179 11 176 6.46e-42 141
MS.gene93155.t1 MTR_8g107070 47.059 170 87 3 13 181 10 177 1.08e-41 142
MS.gene93155.t1 MTR_1g052475 37.209 215 118 7 13 213 11 222 9.54e-41 138
MS.gene93155.t1 MTR_4g099470 52.273 132 61 2 48 179 16 145 1.02e-40 137
MS.gene93155.t1 MTR_7g405790 42.353 170 95 3 16 184 14 181 1.69e-38 132
MS.gene93155.t1 MTR_5g076590 37.563 197 114 6 19 214 12 200 1.15e-36 127
MS.gene93155.t1 MTR_7g117910 43.836 146 79 3 13 157 16 159 2.87e-36 127
MS.gene93155.t1 MTR_3g064390 36.041 197 117 6 19 214 12 200 1.97e-35 124
MS.gene93155.t1 MTR_1g094220 40.237 169 96 5 19 185 33 198 3.66e-35 123
MS.gene93155.t1 MTR_1g094220 40.000 160 92 4 19 176 33 190 2.57e-34 121
MS.gene93155.t1 MTR_2g102060 39.873 158 92 3 19 175 12 167 2.84e-34 121
MS.gene93155.t1 MTR_8g103550 38.272 162 97 3 19 179 11 170 8.22e-34 120
MS.gene93155.t1 MTR_1g094220 39.752 161 93 4 19 177 33 191 2.42e-33 119
MS.gene93155.t1 MTR_4g098950 38.994 159 94 3 18 175 10 166 6.79e-33 118
MS.gene93155.t1 MTR_1g094220 37.640 178 105 5 19 192 33 208 1.44e-32 118
MS.gene93155.t1 MTR_8g090215 37.736 159 96 3 18 175 10 166 3.83e-32 116
MS.gene93155.t1 MTR_5g013900 38.365 159 95 3 18 175 10 166 5.01e-32 115
MS.gene93155.t1 MTR_3g087160 37.278 169 103 3 18 185 10 176 5.10e-32 115
MS.gene93155.t1 MTR_4g069850 36.842 171 100 5 17 180 8 177 7.18e-29 107
MS.gene93155.t1 MTR_8g092020 39.444 180 94 7 1 172 1 173 9.07e-29 107
MS.gene93155.t1 MTR_2g101890 34.653 202 106 6 17 211 10 192 8.50e-28 105
MS.gene93155.t1 MTR_4g012940 33.663 202 108 6 17 211 8 190 4.89e-27 102
MS.gene93155.t1 MTR_2g005500 34.975 203 85 5 13 213 5 162 1.68e-26 100
MS.gene93155.t1 MTR_1g097420 37.423 163 94 5 17 172 8 169 1.95e-26 101
MS.gene93155.t1 MTR_3g064390 40.000 130 75 3 19 147 12 139 1.32e-25 97.8
MS.gene93155.t1 MTR_3g107717 36.813 182 106 7 7 185 2 177 2.15e-25 99.0
MS.gene93155.t1 MTR_3g107707 36.813 182 106 7 7 185 2 177 2.31e-25 99.0
MS.gene93155.t1 MTR_3g107713 36.813 182 106 7 7 185 2 177 2.83e-25 98.6
MS.gene93155.t1 MTR_2g090875 31.250 176 106 5 17 180 6 178 2.37e-23 93.2
MS.gene93155.t1 MTR_3g078260 29.064 203 126 6 8 198 2 198 6.87e-23 92.0
MS.gene93155.t1 MTR_6g087980 30.726 179 109 5 17 183 6 181 7.15e-23 92.0
MS.gene93155.t1 MTR_4g073250 29.609 179 111 5 17 183 6 181 3.59e-22 90.1
MS.gene93155.t1 MTR_8g075240 31.250 176 106 5 17 180 6 178 4.09e-21 87.0
MS.gene93155.t1 MTR_1g097420 34.545 165 98 6 15 172 35 196 4.78e-21 87.8
MS.gene93155.t1 MTR_4g088055 29.651 172 106 5 17 176 6 174 6.63e-21 86.7
MS.gene93155.t1 MTR_5g022600 30.682 176 107 5 17 180 6 178 9.69e-21 86.3
MS.gene93155.t1 MTR_6g039490 36.196 163 96 6 17 172 8 169 1.54e-20 86.3
MS.gene93155.t1 MTR_4g113620 34.568 162 93 5 18 179 14 162 3.28e-19 82.4
MS.gene93155.t1 MTR_8g031810 42.553 94 39 2 16 108 5 84 7.47e-18 75.9
MS.gene93155.t1 MTR_3g078260 32.824 131 81 4 8 137 2 126 7.38e-16 72.0
MS.gene93155.t1 MTR_1452s0010 45.588 68 36 1 47 114 12 78 5.83e-13 63.2
MS.gene93155.t1 MTR_5g078090 31.034 174 97 9 14 176 16 177 2.22e-12 63.5
MS.gene93155.t1 MTR_1686s0010 36.250 80 49 2 37 115 1 79 1.37e-11 59.3
MS.gene93155.t1 MTR_8g091980 30.675 163 83 6 19 153 23 183 4.87e-11 61.2
MS.gene93155.t1 MTR_8g091980 30.675 163 83 6 19 153 23 183 4.91e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93155.t1 AT1G43890 85.354 198 29 0 7 204 3 200 3.47e-126 355
MS.gene93155.t1 AT1G43890 85.354 198 29 0 7 204 3 200 3.47e-126 355
MS.gene93155.t1 AT1G43890 85.354 198 29 0 7 204 3 200 3.47e-126 355
MS.gene93155.t1 AT5G03530 67.308 208 68 0 7 214 3 210 8.73e-110 313
MS.gene93155.t1 AT5G03530 67.308 208 68 0 7 214 3 210 8.73e-110 313
MS.gene93155.t1 AT3G09910 63.942 208 69 2 7 214 3 204 1.06e-89 263
MS.gene93155.t1 AT3G09910 63.942 208 69 2 7 214 3 204 1.06e-89 263
MS.gene93155.t1 AT3G09910 63.942 208 69 2 7 214 3 204 1.06e-89 263
MS.gene93155.t1 AT3G09910 66.111 180 58 1 7 183 3 182 5.00e-81 240
MS.gene93155.t1 AT3G09910 66.111 180 58 1 7 183 3 182 5.00e-81 240
MS.gene93155.t1 AT1G02130 49.261 203 98 4 13 214 4 202 2.17e-57 180
MS.gene93155.t1 AT5G47200 48.768 203 98 5 13 214 4 201 1.03e-56 179
MS.gene93155.t1 AT4G17530 48.768 203 98 5 13 214 4 201 1.60e-56 178
MS.gene93155.t1 AT4G35860 48.925 186 88 4 14 194 3 186 5.27e-54 172
MS.gene93155.t1 AT3G53610 46.860 207 100 7 13 213 11 213 1.41e-53 171
MS.gene93155.t1 AT3G53610 46.860 207 100 7 13 213 11 213 1.41e-53 171
MS.gene93155.t1 AT3G53610 46.860 207 100 7 13 213 11 213 1.41e-53 171
MS.gene93155.t1 AT5G59840 46.377 207 101 7 13 213 11 213 2.83e-53 170
MS.gene93155.t1 AT5G03520 45.000 220 109 6 3 215 1 215 6.61e-53 169
MS.gene93155.t1 AT3G09900 47.642 212 99 7 12 215 10 217 6.87e-53 169
MS.gene93155.t1 AT3G11730 45.545 202 107 3 13 213 4 203 2.61e-52 167
MS.gene93155.t1 AT3G46060 45.894 207 102 7 13 213 11 213 5.49e-52 167
MS.gene93155.t1 AT3G46060 45.894 207 102 7 13 213 11 213 5.49e-52 167
MS.gene93155.t1 AT3G46060 45.894 207 102 7 13 213 11 213 5.49e-52 167
MS.gene93155.t1 AT4G17160 42.647 204 111 4 14 213 3 204 1.64e-50 163
MS.gene93155.t1 AT4G39990 41.905 210 110 5 15 214 15 222 3.35e-50 163
MS.gene93155.t1 AT4G17170 49.375 160 78 3 14 172 3 160 2.40e-49 160
MS.gene93155.t1 AT2G33870 47.024 168 86 3 13 179 9 174 1.25e-47 156
MS.gene93155.t1 AT4G18430 41.905 210 112 4 13 214 9 216 1.46e-46 153
MS.gene93155.t1 AT1G09630 40.476 210 115 4 13 214 8 215 1.60e-46 153
MS.gene93155.t1 AT5G60860 41.014 217 104 6 13 214 9 216 2.27e-46 153
MS.gene93155.t1 AT1G18200 48.214 168 84 3 13 179 9 174 4.06e-46 152
MS.gene93155.t1 AT3G07410 42.105 209 110 4 15 214 10 216 4.25e-46 152
MS.gene93155.t1 AT1G73640 48.214 168 84 3 13 179 9 174 4.59e-46 152
MS.gene93155.t1 AT1G28550 47.024 168 86 3 13 179 9 174 5.26e-46 152
MS.gene93155.t1 AT1G16920 47.619 168 85 3 13 179 9 174 6.51e-46 151
MS.gene93155.t1 AT5G45750 47.024 168 86 3 13 179 9 174 8.17e-46 151
MS.gene93155.t1 AT1G06400 47.619 168 85 3 13 179 9 174 1.84e-45 150
MS.gene93155.t1 AT4G18800 42.029 207 113 4 13 214 9 213 4.22e-45 149
MS.gene93155.t1 AT2G43130 41.262 206 113 5 15 214 10 213 5.59e-45 149
MS.gene93155.t1 AT3G15060 45.087 173 92 3 13 184 9 179 8.80e-45 149
MS.gene93155.t1 AT1G05810 45.029 171 91 3 15 184 10 178 1.57e-44 148
MS.gene93155.t1 AT5G47520 44.444 171 92 3 15 184 12 180 3.49e-44 147
MS.gene93155.t1 AT1G05810 45.029 171 91 3 15 184 56 224 5.03e-44 148
MS.gene93155.t1 AT1G07410 38.942 208 119 5 13 214 8 213 5.31e-44 147
MS.gene93155.t1 AT5G65270 41.176 170 97 3 13 181 13 180 6.40e-44 147
MS.gene93155.t1 AT3G46830 42.857 168 93 3 13 179 8 173 7.33e-43 144
MS.gene93155.t1 AT3G46830 42.857 168 93 3 13 179 8 173 7.33e-43 144
MS.gene93155.t1 AT3G12160 38.095 210 119 5 13 213 11 218 7.90e-43 144
MS.gene93155.t1 AT2G31680 45.783 166 87 3 15 179 10 173 8.45e-43 144
MS.gene93155.t1 AT1G01200 44.706 170 90 4 13 180 24 191 1.42e-42 144
MS.gene93155.t1 AT5G47960 36.792 212 121 6 13 213 11 220 3.68e-42 142
MS.gene93155.t1 AT5G59150 41.040 173 99 3 13 184 8 178 6.49e-42 141
MS.gene93155.t1 AT5G03520 42.938 177 90 5 45 215 34 205 4.65e-38 131
MS.gene93155.t1 AT4G39890 38.251 183 109 3 18 197 10 191 1.31e-37 130
MS.gene93155.t1 AT4G35860 50.407 123 59 2 58 180 2 122 1.64e-36 126
MS.gene93155.t1 AT3G54840 39.429 175 99 5 6 175 19 191 2.64e-34 121
MS.gene93155.t1 AT4G19640 38.889 162 96 3 19 179 12 171 5.19e-34 120
MS.gene93155.t1 AT5G45130 35.533 197 118 6 19 214 12 200 6.04e-34 120
MS.gene93155.t1 AT3G54840 40.506 158 90 4 20 175 2 157 8.58e-34 119
MS.gene93155.t1 AT5G10260 39.623 159 93 3 18 175 10 166 1.99e-33 119
MS.gene93155.t1 AT3G54840 40.764 157 89 4 19 173 35 189 4.73e-33 118
MS.gene93155.t1 AT2G44610 38.994 159 94 3 18 175 10 166 1.54e-32 117
MS.gene93155.t1 AT5G45130 34.872 195 118 6 21 214 22 208 2.74e-32 116
MS.gene93155.t1 AT2G22290 39.623 159 93 3 18 175 10 166 3.01e-32 116
MS.gene93155.t1 AT3G18820 39.024 164 92 5 17 173 8 170 3.76e-29 108
MS.gene93155.t1 AT5G64990 37.821 156 94 3 18 172 8 161 6.98e-29 107
MS.gene93155.t1 AT1G52280 35.149 202 105 6 17 211 8 190 9.82e-29 107
MS.gene93155.t1 AT4G09720 39.264 163 91 5 17 172 8 169 2.35e-28 106
MS.gene93155.t1 AT1G22740 38.037 163 93 5 17 172 8 169 3.77e-28 105
MS.gene93155.t1 AT3G16100 35.149 202 105 6 17 211 8 190 8.92e-28 104
MS.gene93155.t1 AT4G09720 38.690 168 90 6 17 172 8 174 9.85e-28 104
MS.gene93155.t1 AT1G49300 38.037 163 93 5 17 172 8 169 1.16e-27 104
MS.gene93155.t1 AT1G49300 38.037 163 93 5 17 172 8 169 1.16e-27 104
MS.gene93155.t1 AT5G39620 37.647 170 98 5 18 180 6 174 2.04e-27 103
MS.gene93155.t1 AT2G21880 37.805 164 92 6 17 172 9 170 7.85e-27 102
MS.gene93155.t1 AT4G09720 36.782 174 91 6 17 172 8 180 1.01e-26 102
MS.gene93155.t1 AT5G55080 39.024 164 92 6 18 179 14 171 2.74e-26 101
MS.gene93155.t1 AT5G64990 36.196 163 94 4 18 172 8 168 3.79e-26 100
MS.gene93155.t1 AT5G59150 38.211 123 74 2 57 179 2 122 1.89e-25 97.8
MS.gene93155.t1 AT4G19640 39.844 128 74 3 19 145 12 137 8.58e-25 95.5
MS.gene93155.t1 AT4G19640 39.098 133 78 3 19 150 12 142 1.54e-24 96.3
MS.gene93155.t1 AT2G44690 31.667 180 108 5 17 184 18 194 1.55e-24 96.7
MS.gene93155.t1 AT5G20010 35.789 190 105 8 7 185 2 185 3.43e-24 95.9
MS.gene93155.t1 AT5G55190 37.356 174 100 7 9 179 4 171 5.13e-24 95.5
MS.gene93155.t1 AT5G20020 36.932 176 102 7 7 179 2 171 7.18e-24 95.1
MS.gene93155.t1 AT4G35020 30.168 179 110 5 17 183 6 181 9.75e-23 91.7
MS.gene93155.t1 AT4G35020 30.168 179 110 5 17 183 6 181 9.75e-23 91.7
MS.gene93155.t1 AT4G35020 30.168 179 110 5 17 183 6 181 9.75e-23 91.7
MS.gene93155.t1 AT3G51300 31.034 174 105 5 19 180 8 178 1.32e-22 91.3
MS.gene93155.t1 AT3G48040 30.526 190 113 7 8 185 2 184 7.28e-22 89.4
MS.gene93155.t1 AT4G28950 29.379 177 112 5 17 183 6 179 1.01e-21 89.0
MS.gene93155.t1 AT2G17800 30.114 176 108 5 17 180 6 178 2.14e-21 87.8
MS.gene93155.t1 AT2G17800 30.114 176 108 5 17 180 6 178 2.14e-21 87.8
MS.gene93155.t1 AT4G09720 40.458 131 71 4 48 172 6 135 2.28e-21 87.4
MS.gene93155.t1 AT4G09720 40.458 131 71 4 48 172 6 135 2.28e-21 87.4
MS.gene93155.t1 AT4G09720 40.458 131 71 4 48 172 6 135 2.28e-21 87.4
MS.gene93155.t1 AT1G20090 29.545 176 109 5 17 180 5 177 2.32e-21 87.8
MS.gene93155.t1 AT1G75840 29.545 176 109 5 17 180 6 178 2.96e-21 87.4
MS.gene93155.t1 AT4G35950 29.545 176 109 5 17 180 6 178 1.13e-20 85.9
MS.gene93155.t1 AT5G62880 29.189 185 113 6 8 180 2 180 3.74e-20 85.1
MS.gene93155.t1 AT5G45970 28.488 172 108 5 17 176 6 174 6.86e-20 84.0
MS.gene93155.t1 AT3G48040 30.939 181 106 7 8 175 2 176 9.28e-20 83.2
MS.gene93155.t1 AT2G21880 38.636 132 72 5 48 172 16 145 1.42e-19 82.8
MS.gene93155.t1 AT2G21880 38.636 132 72 5 48 172 16 145 1.42e-19 82.8
MS.gene93155.t1 AT2G21880 32.927 164 92 7 17 172 9 162 1.43e-17 78.2
MS.gene93155.t1 AT5G62880 30.000 170 101 6 8 165 2 165 1.94e-17 77.4
MS.gene93155.t1 AT3G51290 29.605 152 93 4 40 180 631 779 2.03e-15 74.7
MS.gene93155.t1 AT4G35020 34.483 116 72 3 19 133 8 120 3.12e-15 70.5
MS.gene93155.t1 AT4G35020 34.483 116 72 3 19 133 8 120 3.12e-15 70.5
MS.gene93155.t1 AT5G46025 35.577 104 66 1 78 181 6 108 3.34e-15 69.3
MS.gene93155.t1 AT5G37680 29.545 176 97 9 14 176 16 177 1.15e-12 64.3
MS.gene93155.t1 AT3G49870 32.934 167 95 9 18 176 1 158 2.37e-12 63.2
MS.gene93155.t1 AT3G49870 32.749 171 98 9 14 176 16 177 3.94e-12 62.8
MS.gene93155.t1 AT5G67560 32.749 171 98 9 14 176 16 177 4.10e-12 62.8
MS.gene93155.t1 AT5G64813 28.221 163 87 6 19 153 24 184 8.29e-11 60.8
MS.gene93155.t1 AT5G64813 28.221 163 87 6 19 153 24 184 8.29e-11 60.8
MS.gene93155.t1 AT5G64813 28.221 163 87 6 19 153 24 184 8.29e-11 60.8
MS.gene93155.t1 AT3G22950 28.244 131 87 3 18 148 18 141 8.85e-11 59.3
MS.gene93155.t1 AT3G22950 28.244 131 87 3 18 148 18 141 8.85e-11 59.3

Find 39 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTATGATTGGTGATTC+TGG 0.217855 1.3:+15413974 MS.gene93155:CDS
TTACAAATCTATCTGATATA+TGG 0.238643 1.3:+15416940 MS.gene93155:CDS
AGAAGTTAAAACTTGCTATA+TGG 0.282325 1.3:+15415450 MS.gene93155:CDS
GAAAGGTTTCGAACACTTAC+TGG 0.285773 1.3:+15415592 MS.gene93155:CDS
GTGGACTTTGCAAGGCAATA+TGG 0.296394 1.3:+15417186 MS.gene93155:CDS
CTCCTGGCTGAGGGCTCATC+TGG 0.330734 1.3:+15417569 MS.gene93155:CDS
AGGTGCACAAGGAATAATTA+TGG 0.331547 1.3:+15415627 MS.gene93155:CDS
TGAAAGGGCTGTTACCAAAA+AGG 0.345224 1.3:+15417158 MS.gene93155:CDS
AATGGATGTTTCTTCTTCTT+CGG 0.349573 1.3:+15413916 None:intergenic
GAAGTTAAAACTTGCTATAT+GGG 0.357838 1.3:+15415451 MS.gene93155:CDS
GAAGATCTTTCTCCCACTAT+TGG 0.364166 1.3:+15414043 MS.gene93155:CDS
TTGTTCAAGCTTCTTATGAT+TGG 0.383844 1.3:+15413965 MS.gene93155:CDS
GATTGCATCAAGATGCTTGT+TGG 0.386118 1.3:+15416996 MS.gene93155:CDS
TACAAATCTATCTGATATAT+GGG 0.407172 1.3:+15416941 MS.gene93155:CDS
TTCTTCTCGTGCAGCTGGAC+AGG 0.417456 1.3:+15415570 MS.gene93155:intron
GTTAAATATGTTACACTTGG+TGG 0.437372 1.3:+15415425 MS.gene93155:CDS
TACACCAAGCCTCCTGGCTG+AGG 0.454373 1.3:+15417559 MS.gene93155:CDS
ATGATTGGTGATTCTGGTGT+TGG 0.454677 1.3:+15413980 MS.gene93155:CDS
TGGACTTTGCAAGGCAATAT+GGG 0.468552 1.3:+15417187 MS.gene93155:CDS
GAGCCCTCAGCCAGGAGGCT+TGG 0.469370 1.3:-15417563 None:intergenic
GGTGCACAAGGAATAATTAT+GGG 0.473429 1.3:+15415628 MS.gene93155:CDS
CTTACTGGTTCATATTATAG+AGG 0.473869 1.3:+15415607 MS.gene93155:CDS
TTGCACTGCATTCAGTATAG+AGG 0.489926 1.3:-15417212 None:intergenic
TTTGGATACACCAAGCCTCC+TGG 0.503438 1.3:+15417553 MS.gene93155:CDS
CACCTAGCAGCTGTTGCTCA+TGG 0.531342 1.3:+15417639 MS.gene93155:CDS
CACCAGATGAGCCCTCAGCC+AGG 0.548724 1.3:-15417571 None:intergenic
AGGAAGCGGTGGACTTTGCA+AGG 0.556741 1.3:+15417178 MS.gene93155:CDS
AAAGTTAAATATGTTACACT+TGG 0.573517 1.3:+15415422 MS.gene93155:CDS
CACCATGAGCAACAGCTGCT+AGG 0.588474 1.3:-15417641 None:intergenic
GGTGATGCATCAGACTCTTG+CGG 0.604993 1.3:-15417620 None:intergenic
ACACCAAGCCTCCTGGCTGA+GGG 0.615958 1.3:+15417560 MS.gene93155:CDS
TTTGTGGACAAACCAATAGT+GGG 0.616040 1.3:-15414055 None:intergenic
CTCGTGCAGCTGGACAGGAA+AGG 0.620766 1.3:+15415575 MS.gene93155:intron
AAACTTGCTATATGGGACAC+GGG 0.627855 1.3:+15415458 MS.gene93155:CDS
AAAACTTGCTATATGGGACA+CGG 0.637080 1.3:+15415457 MS.gene93155:CDS
TCATATTATAGAGGTGCACA+AGG 0.659834 1.3:+15415616 MS.gene93155:CDS
TGTTGGAAACAAAGTTGACA+AGG 0.666842 1.3:+15417013 MS.gene93155:CDS
CAGATGAGCCCTCAGCCAGG+AGG 0.684281 1.3:-15417568 None:intergenic
GAACAAGTAATCGAACTCAG+CGG 0.788131 1.3:-15413948 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAATTTATATTGCATT+GGG + chr1.3:15415233-15415252 MS.gene93155:intron 15.0%
!! TAAACAAATTTATATTGCAT+TGG + chr1.3:15415232-15415251 MS.gene93155:intron 15.0%
!!! AGTATTTCTTTTTATAAGAT+AGG + chr1.3:15416384-15416403 MS.gene93155:intron 15.0%
!!! CATATCATTATTATTTTAGA+AGG - chr1.3:15415955-15415974 None:intergenic 15.0%
!!! GTATTTCTTTTTATAAGATA+GGG + chr1.3:15416385-15416404 MS.gene93155:intron 15.0%
!!! TGAAATTCTGTTATTTTTTT+GGG + chr1.3:15415517-15415536 MS.gene93155:intron 15.0%
!!! TTATTATTTTCATGTTTTTG+AGG - chr1.3:15417309-15417328 None:intergenic 15.0%
!!! TTGAAATTCTGTTATTTTTT+TGG + chr1.3:15415516-15415535 MS.gene93155:intron 15.0%
!! AAAATTGTACATCATATTCA+TGG - chr1.3:15415711-15415730 None:intergenic 20.0%
!! AAAGTTAAATATGTTACACT+TGG + chr1.3:15415422-15415441 MS.gene93155:CDS 20.0%
!! AACAAATTTATATTGCATTG+GGG + chr1.3:15415234-15415253 MS.gene93155:intron 20.0%
!! ATAGTAAACAAGCTAAAAAA+AGG - chr1.3:15415055-15415074 None:intergenic 20.0%
!! ATCAATAACATTGGTATTAT+AGG - chr1.3:15416198-15416217 None:intergenic 20.0%
!! CATATATGGATATAAAGATT+GGG + chr1.3:15416425-15416444 MS.gene93155:intron 20.0%
!! TACAAATCTATCTGATATAT+GGG + chr1.3:15416941-15416960 MS.gene93155:CDS 20.0%
!! TACGTCTATATTAACATTAT+AGG - chr1.3:15415214-15415233 None:intergenic 20.0%
!! TATAATACCAATGTTATTGA+TGG + chr1.3:15416197-15416216 MS.gene93155:intron 20.0%
!! TCAATAACATTGGTATTATA+GGG - chr1.3:15416197-15416216 None:intergenic 20.0%
!! TTACAAATCTATCTGATATA+TGG + chr1.3:15416940-15416959 MS.gene93155:CDS 20.0%
!!! AACTATGAAAGTATAATAAC+AGG - chr1.3:15415860-15415879 None:intergenic 20.0%
!!! AGTGTATTACTTTTTTCAAA+AGG + chr1.3:15416034-15416053 MS.gene93155:intron 20.0%
!!! TAAAAGCATTCAAACAAATT+AGG - chr1.3:15415736-15415755 None:intergenic 20.0%
!!! TTATTGTATCTTTTGCTTTT+TGG + chr1.3:15416720-15416739 MS.gene93155:intron 20.0%
! AAACTGACTGATAGATAAAT+GGG - chr1.3:15416853-15416872 None:intergenic 25.0%
! ACTTTCCTAAAATATGAGAT+AGG - chr1.3:15417139-15417158 None:intergenic 25.0%
! ATAAACTTATCAGTGAATCT+GGG + chr1.3:15416878-15416897 MS.gene93155:intron 25.0%
! ATCCAAAATGCATGAATAAA+AGG - chr1.3:15414114-15414133 None:intergenic 25.0%
! ATTACATTTAGAAGCAAAAC+AGG - chr1.3:15416801-15416820 None:intergenic 25.0%
! GACTAATAACTAATTCTTCA+GGG + chr1.3:15416579-15416598 MS.gene93155:intron 25.0%
! GCATATATGGATATAAAGAT+TGG + chr1.3:15416424-15416443 MS.gene93155:intron 25.0%
! TAAACTGACTGATAGATAAA+TGG - chr1.3:15416854-15416873 None:intergenic 25.0%
! TACTAAAGTCATTGCATATA+TGG + chr1.3:15416411-15416430 MS.gene93155:intron 25.0%
! TACTTTAACCTATAATTGAG+TGG - chr1.3:15415345-15415364 None:intergenic 25.0%
! TATAAACTTATCAGTGAATC+TGG + chr1.3:15416877-15416896 MS.gene93155:intron 25.0%
! TATACAGTGTTGTCAAATAT+CGG - chr1.3:15416340-15416359 None:intergenic 25.0%
! TCAAAACTTAACACAAAGTT+TGG - chr1.3:15417079-15417098 None:intergenic 25.0%
! TGACTAATAACTAATTCTTC+AGG + chr1.3:15416578-15416597 MS.gene93155:intron 25.0%
! TGATAAGTTTAACTACTTGA+AGG - chr1.3:15417423-15417442 None:intergenic 25.0%
! TGATGTGAAATTCTATCAAA+TGG + chr1.3:15414983-15415002 MS.gene93155:intron 25.0%
! TGATTAAGAGTTACATAAAG+TGG + chr1.3:15414270-15414289 MS.gene93155:intron 25.0%
! TGCAAATGCAAATTCATAAA+TGG - chr1.3:15417043-15417062 None:intergenic 25.0%
! TGTTTCATCCAAAATATTGA+CGG - chr1.3:15416067-15416086 None:intergenic 25.0%
! TTCACAAGAAAAAATTGTCA+AGG - chr1.3:15417379-15417398 None:intergenic 25.0%
! TTTAAGAATTGAGTGTAAGA+TGG - chr1.3:15415191-15415210 None:intergenic 25.0%
! TTTACCATAAAAACACACAA+GGG - chr1.3:15415819-15415838 None:intergenic 25.0%
!! AAATCAGTATTTTCAGAAAG+TGG + chr1.3:15417488-15417507 MS.gene93155:intron 25.0%
!! GGAAGTAATGTTTCAATTTT+GGG + chr1.3:15417509-15417528 MS.gene93155:intron 25.0%
!! TGGAAGTAATGTTTCAATTT+TGG + chr1.3:15417508-15417527 MS.gene93155:intron 25.0%
!! TGTTACTAAGTTTCTCATTT+TGG + chr1.3:15416138-15416157 MS.gene93155:intron 25.0%
!! TTCCTTTTATTCATGCATTT+TGG + chr1.3:15414109-15414128 MS.gene93155:intron 25.0%
!! TTTTACCATAAAAACACACA+AGG - chr1.3:15415820-15415839 None:intergenic 25.0%
!!! AGAAGTTAAAACTTGCTATA+TGG + chr1.3:15415450-15415469 MS.gene93155:CDS 25.0%
!!! AGACTTATTGTACTTTTTCA+CGG + chr1.3:15414825-15414844 MS.gene93155:intron 25.0%
!!! CATATTTTAGGAAAGTGAAA+GGG + chr1.3:15417143-15417162 MS.gene93155:intron 25.0%
!!! CGTACTATTAACATTGATTT+TGG + chr1.3:15414195-15414214 MS.gene93155:intron 25.0%
!!! GAAATAAAATCGATTAGCTT+AGG - chr1.3:15415894-15415913 None:intergenic 25.0%
!!! GAAGTTAAAACTTGCTATAT+GGG + chr1.3:15415451-15415470 MS.gene93155:CDS 25.0%
!!! TAACATTGATTTTGGTTCTA+CGG + chr1.3:15414203-15414222 MS.gene93155:intron 25.0%
!!! TCAATATTTTGGATGAAACA+TGG + chr1.3:15416067-15416086 MS.gene93155:intron 25.0%
!!! TCATATTTTAGGAAAGTGAA+AGG + chr1.3:15417142-15417161 MS.gene93155:intron 25.0%
!!! TCGATTTTATTTCGAAATTC+AGG + chr1.3:15415901-15415920 MS.gene93155:intron 25.0%
!!! TTTTGGCATTTGATAATCAT+TGG + chr1.3:15416155-15416174 MS.gene93155:intron 25.0%
AAAGCTGAATAGTGAATTCA+AGG + chr1.3:15416679-15416698 MS.gene93155:intron 30.0%
AAGAAGCCATATGAATGTTA+CGG + chr1.3:15415282-15415301 MS.gene93155:intron 30.0%
AAGATATTGCATGAATGTAG+GGG + chr1.3:15414943-15414962 MS.gene93155:intron 30.0%
AAGCTGAATAGTGAATTCAA+GGG + chr1.3:15416680-15416699 MS.gene93155:intron 30.0%
AATACCAATGTTATTGATGG+CGG + chr1.3:15416200-15416219 MS.gene93155:intron 30.0%
AATGACAAATTTGTGAAGGA+TGG - chr1.3:15416271-15416290 None:intergenic 30.0%
AATTTAAGGAATCAGAATCG+TGG + chr1.3:15415153-15415172 MS.gene93155:intron 30.0%
AATTTATATTGCATTGGGGA+AGG + chr1.3:15415238-15415257 MS.gene93155:intron 30.0%
AGAGTTACATAAAGTGGTTT+AGG + chr1.3:15414276-15414295 MS.gene93155:intron 30.0%
CAAATCTTCTGTATTTGCAT+AGG - chr1.3:15416120-15416139 None:intergenic 30.0%
CAAGAAAAAATTGTCAAGGA+AGG - chr1.3:15417375-15417394 None:intergenic 30.0%
CAAGATATTGCATGAATGTA+GGG + chr1.3:15414942-15414961 MS.gene93155:intron 30.0%
CATATGGCTTCTTAAATGAA+AGG - chr1.3:15415275-15415294 None:intergenic 30.0%
CATATTGTACATACATCTTG+AGG - chr1.3:15416634-15416653 None:intergenic 30.0%
CCATACCAAAATCAAACTTA+CGG - chr1.3:15414421-15414440 None:intergenic 30.0%
CCTCAAATGTGATTAATGTT+CGG - chr1.3:15414566-15414585 None:intergenic 30.0%
GTACTTAAAACCTCAAATCT+AGG + chr1.3:15416468-15416487 MS.gene93155:intron 30.0%
GTTAAATATGTTACACTTGG+TGG + chr1.3:15415425-15415444 MS.gene93155:CDS 30.0%
TAACCTATAATTGAGTGGTA+GGG - chr1.3:15415340-15415359 None:intergenic 30.0%
TGATTTCAGGAAGCTAATAA+AGG + chr1.3:15414723-15414742 MS.gene93155:intron 30.0%
TTAACCTATAATTGAGTGGT+AGG - chr1.3:15415341-15415360 None:intergenic 30.0%
TTGTTCAAGCTTCTTATGAT+TGG + chr1.3:15413965-15413984 MS.gene93155:CDS 30.0%
TTTAGAAGGAAATGTACAAG+AGG - chr1.3:15415941-15415960 None:intergenic 30.0%
! AAATTTGTCATTGCGGTTTT+CGG + chr1.3:15416279-15416298 MS.gene93155:intron 30.0%
! ACTAACCAAAACGTGATTTT+TGG + chr1.3:15414613-15414632 MS.gene93155:intron 30.0%
! ACTTTGAAAGCTTAAACTGT+CGG + chr1.3:15416519-15416538 MS.gene93155:intron 30.0%
! AGTCAAATGTGATTTGACTT+CGG - chr1.3:15414596-15414615 None:intergenic 30.0%
! ATCATGAAAGTGTGAAAACA+AGG - chr1.3:15414083-15414102 None:intergenic 30.0%
! ATTGATTCTGACATAAAGCT+AGG + chr1.3:15414470-15414489 MS.gene93155:intron 30.0%
! CAAAGTATTTGATCATGACA+TGG - chr1.3:15416505-15416524 None:intergenic 30.0%
! GAAATATGCCGTCAATATTT+TGG + chr1.3:15416056-15416075 MS.gene93155:intron 30.0%
! GTTTGCCTATCTCATATTTT+AGG + chr1.3:15417131-15417150 MS.gene93155:intron 30.0%
! TCATGAAAGTGTGAAAACAA+GGG - chr1.3:15414082-15414101 None:intergenic 30.0%
! TTATTAGCTTCCTGAAATCA+CGG - chr1.3:15414723-15414742 None:intergenic 30.0%
!! AAGTTTGATTTTGGTATGGT+CGG + chr1.3:15414422-15414441 MS.gene93155:intron 30.0%
!! CTTACTGGTTCATATTATAG+AGG + chr1.3:15415607-15415626 MS.gene93155:CDS 30.0%
!! TGATATGTTCATTTTCAAGC+TGG + chr1.3:15415968-15415987 MS.gene93155:intron 30.0%
!! TTATCCCTTGTGTGTTTTTA+TGG + chr1.3:15415812-15415831 MS.gene93155:intron 30.0%
!!! ATTCTTTTTCGAGATTGAAG+TGG + chr1.3:15416000-15416019 MS.gene93155:intron 30.0%
!!! CATGCTGATTCAGTTTATTT+TGG + chr1.3:15415489-15415508 MS.gene93155:intron 30.0%
!!! TCTGTGTTTTTTCAATGTAG+TGG + chr1.3:15414140-15414159 MS.gene93155:intron 30.0%
AATAAGTCTTCGCATCTGTT+TGG - chr1.3:15414814-15414833 None:intergenic 35.0%
AATAGTGAATTCAAGGGTCA+AGG + chr1.3:15416686-15416705 MS.gene93155:intron 35.0%
AGATATTGCATGAATGTAGG+GGG + chr1.3:15414944-15414963 MS.gene93155:intron 35.0%
AGGTGCACAAGGAATAATTA+TGG + chr1.3:15415627-15415646 MS.gene93155:CDS 35.0%
ATATTCATGGTATAGCAAGC+AGG - chr1.3:15415698-15415717 None:intergenic 35.0%
ATCTTCTGTATTTGCATAGG+AGG - chr1.3:15416117-15416136 None:intergenic 35.0%
ATTCAAACATGCACTCAAAG+TGG - chr1.3:15414391-15414410 None:intergenic 35.0%
ATTCTATCAAATGGCATCAG+TGG + chr1.3:15414992-15415011 MS.gene93155:intron 35.0%
CACAAACCGTAACATTCATA+TGG - chr1.3:15415291-15415310 None:intergenic 35.0%
CCAAAATCTGGAAACAACAA+AGG - chr1.3:15417538-15417557 None:intergenic 35.0%
CCATGATTTCAAGAAGAACA+TGG + chr1.3:15414773-15414792 MS.gene93155:intron 35.0%
CCATGTTCTTCTTGAAATCA+TGG - chr1.3:15414776-15414795 None:intergenic 35.0%
CCGAACATTAATCACATTTG+AGG + chr1.3:15414563-15414582 MS.gene93155:intron 35.0%
CCTTCACAAATTTGTCATTG+CGG + chr1.3:15416272-15416291 MS.gene93155:intron 35.0%
CTACGAAATGGAGAATATCA+AGG - chr1.3:15415667-15415686 None:intergenic 35.0%
CTTAAAACCTCAAATCTAGG+AGG + chr1.3:15416471-15416490 MS.gene93155:intron 35.0%
GAACTGTAAATCATGCAACA+TGG + chr1.3:15415763-15415782 MS.gene93155:intron 35.0%
GCAAGATATTGCATGAATGT+AGG + chr1.3:15414941-15414960 MS.gene93155:intron 35.0%
GGTGCACAAGGAATAATTAT+GGG + chr1.3:15415628-15415647 MS.gene93155:CDS 35.0%
TAACTAATTCTTCAGGGTCA+AGG + chr1.3:15416585-15416604 MS.gene93155:intron 35.0%
TGTTGGAAACAAAGTTGACA+AGG + chr1.3:15417013-15417032 MS.gene93155:CDS 35.0%
TTTGTGGACAAACCAATAGT+GGG - chr1.3:15414058-15414077 None:intergenic 35.0%
! AAATGTTGAGCAGTGTTTTG+AGG + chr1.3:15417245-15417264 MS.gene93155:CDS 35.0%
! CTTCTTATGATTGGTGATTC+TGG + chr1.3:15413974-15413993 MS.gene93155:CDS 35.0%
! CTTTGAAAGCTTAAACTGTC+GGG + chr1.3:15416520-15416539 MS.gene93155:intron 35.0%
! GACTCTTTTGAACATAATGC+AGG + chr1.3:15415389-15415408 MS.gene93155:intron 35.0%
! TCATATTATAGAGGTGCACA+AGG + chr1.3:15415616-15415635 MS.gene93155:CDS 35.0%
! TTTTGTGGACAAACCAATAG+TGG - chr1.3:15414059-15414078 None:intergenic 35.0%
!! AAAACTTGCTATATGGGACA+CGG + chr1.3:15415457-15415476 MS.gene93155:CDS 35.0%
!! AACCAAAACGTGATTTTTGG+AGG + chr1.3:15414616-15414635 MS.gene93155:intron 35.0%
!! CCGTAAGTTTGATTTTGGTA+TGG + chr1.3:15414418-15414437 MS.gene93155:intron 35.0%
!! TGAAGCCGTAAGTTTGATTT+TGG + chr1.3:15414413-15414432 MS.gene93155:intron 35.0%
!! TTCATGTTTTTGAGGACATG+AGG - chr1.3:15417301-15417320 None:intergenic 35.0%
!! TTTTGAGGAGCTTGTAATGA+AGG + chr1.3:15417260-15417279 MS.gene93155:CDS 35.0%
!!! CCTTTGTTGTTTCCAGATTT+TGG + chr1.3:15417535-15417554 MS.gene93155:intron 35.0%
AAAGAGCTTCTCTCTCATAG+TGG + chr1.3:15415119-15415138 MS.gene93155:intron 40.0%
AAAGGACATGTGAGACAACA+AGG - chr1.3:15415037-15415056 None:intergenic 40.0%
AAGAGCTTCTCTCTCATAGT+GGG + chr1.3:15415120-15415139 MS.gene93155:intron 40.0%
AGGAAGCTTCTGTAGTAATG+CGG + chr1.3:15414743-15414762 MS.gene93155:intron 40.0%
ATCATAGCCTCCTAGATTTG+AGG - chr1.3:15416481-15416500 None:intergenic 40.0%
CATCCCTACCACTCAATTAT+AGG + chr1.3:15415334-15415353 MS.gene93155:intron 40.0%
CCGCAATGACAAATTTGTGA+AGG - chr1.3:15416275-15416294 None:intergenic 40.0%
CTAGACTTGGAACCAAATGT+GGG + chr1.3:15414640-15414659 MS.gene93155:intron 40.0%
CTTTCCGCCATCAATAACAT+TGG - chr1.3:15416207-15416226 None:intergenic 40.0%
GAAAGGTTTCGAACACTTAC+TGG + chr1.3:15415592-15415611 MS.gene93155:CDS 40.0%
GAACAAGTAATCGAACTCAG+CGG - chr1.3:15413951-15413970 None:intergenic 40.0%
GAAGATCTTTCTCCCACTAT+TGG + chr1.3:15414043-15414062 MS.gene93155:CDS 40.0%
GACAAATTTGTGAAGGATGG+CGG - chr1.3:15416268-15416287 None:intergenic 40.0%
GATTGCATCAAGATGCTTGT+TGG + chr1.3:15416996-15417015 MS.gene93155:CDS 40.0%
GCAACTAACTTGAAGCAAGT+AGG - chr1.3:15417459-15417478 None:intergenic 40.0%
GGGATGATAAAACAGCATCA+TGG - chr1.3:15415320-15415339 None:intergenic 40.0%
TCTAGACTTGGAACCAAATG+TGG + chr1.3:15414639-15414658 MS.gene93155:intron 40.0%
TGAAAGGGCTGTTACCAAAA+AGG + chr1.3:15417158-15417177 MS.gene93155:CDS 40.0%
TGAATGTTACGGTTTGTGTG+TGG + chr1.3:15415293-15415312 MS.gene93155:intron 40.0%
TGGACTTTGCAAGGCAATAT+GGG + chr1.3:15417187-15417206 MS.gene93155:CDS 40.0%
TTGCACTGCATTCAGTATAG+AGG - chr1.3:15417215-15417234 None:intergenic 40.0%
! ATGATTGGTGATTCTGGTGT+TGG + chr1.3:15413980-15413999 MS.gene93155:CDS 40.0%
! GACCTCCAAAAATCACGTTT+TGG - chr1.3:15414621-15414640 None:intergenic 40.0%
! GTGTGAAAACAAGGGTTTTG+TGG - chr1.3:15414074-15414093 None:intergenic 40.0%
!! AAACTTGCTATATGGGACAC+GGG + chr1.3:15415458-15415477 MS.gene93155:CDS 40.0%
!! AACTCAAGCTTGCTGAAAGT+TGG + chr1.3:15417332-15417351 MS.gene93155:intron 40.0%
!! CGATTAGCTTAGGCTATACA+TGG - chr1.3:15415884-15415903 None:intergenic 40.0%
!! GATTTTTGGAGGTCTAGACT+TGG + chr1.3:15414627-15414646 MS.gene93155:intron 40.0%
!! TAGGAGGTTTGGTTTGGTTT+GGG + chr1.3:15414883-15414902 MS.gene93155:intron 40.0%
!! TGGGTGTTGGGAGAAATTTA+AGG + chr1.3:15415139-15415158 MS.gene93155:intron 40.0%
AAGCTTAAACTGTCGGGTGA+AGG + chr1.3:15416526-15416545 MS.gene93155:intron 45.0%
CAGGAAAGGTAGCTACGAAA+TGG - chr1.3:15415679-15415698 None:intergenic 45.0%
CATGGTATAGCAAGCAGGAA+AGG - chr1.3:15415693-15415712 None:intergenic 45.0%
CGTCTGTTTGGATCTGTGTT+TGG + chr1.3:15414668-15414687 MS.gene93155:intron 45.0%
CTCGAAAGTTCCCATCTCAA+GGG - chr1.3:15414856-15414875 None:intergenic 45.0%
CTTGAGATGGGAACTTTCGA+GGG + chr1.3:15414855-15414874 MS.gene93155:intron 45.0%
GCATCTGTTTGGATATGCGT+TGG - chr1.3:15414803-15414822 None:intergenic 45.0%
GGCTGTTACCAAAAAGGAAG+CGG + chr1.3:15417164-15417183 MS.gene93155:CDS 45.0%
GTGGACTTTGCAAGGCAATA+TGG + chr1.3:15417186-15417205 MS.gene93155:CDS 45.0%
GTGTTGTCAAATATCGGCCA+TGG - chr1.3:15416334-15416353 None:intergenic 45.0%
GTTCACCTAACGTGTGTTTG+CGG + chr1.3:15414692-15414711 MS.gene93155:intron 45.0%
TGTTACCAAAAAGGAAGCGG+TGG + chr1.3:15417167-15417186 MS.gene93155:CDS 45.0%
TTGTCAAATATCGGCCATGG+CGG - chr1.3:15416331-15416350 None:intergenic 45.0%
! AAAGTCCACCGCTTCCTTTT+TGG - chr1.3:15417175-15417194 None:intergenic 45.0%
! ATGGCGGAAAGCCAAAAATC+CGG + chr1.3:15416216-15416235 MS.gene93155:intron 45.0%
! GTATTTTCTTCTCGTGCAGC+TGG + chr1.3:15415565-15415584 MS.gene93155:intron 45.0%
! GTTCACTAGGAGGTTTGGTT+TGG + chr1.3:15414877-15414896 MS.gene93155:intron 45.0%
!! AGGAGGTTTGGTTTGGTTTG+GGG + chr1.3:15414884-15414903 MS.gene93155:intron 45.0%
!! CTAGGAGGTTTGGTTTGGTT+TGG + chr1.3:15414882-15414901 MS.gene93155:intron 45.0%
!! GATTTTGGTATGGTCGGACT+CGG + chr1.3:15414428-15414447 MS.gene93155:intron 45.0%
!! GGCTTGGTGTATCCAAAATC+TGG - chr1.3:15417550-15417569 None:intergenic 45.0%
!! GTTTTTGAGGACATGAGGAG+AGG - chr1.3:15417296-15417315 None:intergenic 45.0%
!! TCTCTCTCATAGTGGGTGTT+GGG + chr1.3:15415127-15415146 MS.gene93155:intron 45.0%
!! TTCTCTCTCATAGTGGGTGT+TGG + chr1.3:15415126-15415145 MS.gene93155:intron 45.0%
!!! ATAATATTTTAAATAGATTA+TGG - chr1.3:15416770-15416789 None:intergenic 5.0%
ACTTTCGAGGGTTCACTAGG+AGG + chr1.3:15414867-15414886 MS.gene93155:intron 50.0%
CAAAAATCCGGCACATCCGA+CGG + chr1.3:15416228-15416247 MS.gene93155:intron 50.0%
CACGGAAAGACCCTTGAGAT+GGG + chr1.3:15414843-15414862 MS.gene93155:intron 50.0%
CCTCGAAAGTTCCCATCTCA+AGG - chr1.3:15414857-15414876 None:intergenic 50.0%
CCTTGAGATGGGAACTTTCG+AGG + chr1.3:15414854-15414873 MS.gene93155:intron 50.0%
GAATGTAGGGGGAAAGTGAC+AGG + chr1.3:15414955-15414974 MS.gene93155:intron 50.0%
GGAACTTTCGAGGGTTCACT+AGG + chr1.3:15414864-15414883 MS.gene93155:intron 50.0%
GGTGATGCATCAGACTCTTG+CGG - chr1.3:15417623-15417642 None:intergenic 50.0%
TCACGGAAAGACCCTTGAGA+TGG + chr1.3:15414842-15414861 MS.gene93155:intron 50.0%
TCGTTCCGCAAACACACGTT+AGG - chr1.3:15414700-15414719 None:intergenic 50.0%
TTTGGATACACCAAGCCTCC+TGG + chr1.3:15417553-15417572 MS.gene93155:CDS 50.0%
! TCGGGTGAAGGCACAAAAGA+TGG + chr1.3:15416538-15416557 MS.gene93155:intron 50.0%
ACAGACGCTTCGCCCACATT+TGG - chr1.3:15414655-15414674 None:intergenic 55.0%
CACCATGAGCAACAGCTGCT+AGG - chr1.3:15417644-15417663 None:intergenic 55.0%
CACCTAGCAGCTGTTGCTCA+TGG + chr1.3:15417639-15417658 MS.gene93155:CDS 55.0%
CGAGGGTTCACTAGGAGGTT+TGG + chr1.3:15414872-15414891 MS.gene93155:intron 55.0%
GGTCGGACTCGGAACTGATT+TGG + chr1.3:15414439-15414458 MS.gene93155:intron 55.0%
TGCGGAACGACCGTGATTTC+AGG + chr1.3:15414710-15414729 MS.gene93155:intron 55.0%
TTCTTCTCGTGCAGCTGGAC+AGG + chr1.3:15415570-15415589 MS.gene93155:intron 55.0%
! AGGAAGCGGTGGACTTTGCA+AGG + chr1.3:15417178-15417197 MS.gene93155:CDS 55.0%
! ATGTGGGCGAAGCGTCTGTT+TGG + chr1.3:15414656-15414675 MS.gene93155:intron 55.0%
! CGTCGGATGTGCCGGATTTT+TGG - chr1.3:15416230-15416249 None:intergenic 55.0%
!! CATGGCGGCATAGCGGATAT+CGG - chr1.3:15416316-15416335 None:intergenic 55.0%
AATCCGGCACATCCGACGGA+TGG + chr1.3:15416232-15416251 MS.gene93155:intron 60.0%
ACACCAAGCCTCCTGGCTGA+GGG + chr1.3:15417560-15417579 MS.gene93155:CDS 60.0%
CGATATCCGCTATGCCGCCA+TGG + chr1.3:15416314-15416333 MS.gene93155:intron 60.0%
CTCGTGCAGCTGGACAGGAA+AGG + chr1.3:15415575-15415594 MS.gene93155:intron 60.0%
TACACCAAGCCTCCTGGCTG+AGG + chr1.3:15417559-15417578 MS.gene93155:CDS 60.0%
TATCGGCCATGGCGGCATAG+CGG - chr1.3:15416323-15416342 None:intergenic 60.0%
! ACATCCGACGGATGGTGCTG+TGG + chr1.3:15416240-15416259 MS.gene93155:intron 60.0%
!! GGCATAGCGGATATCGGTGG+CGG - chr1.3:15416310-15416329 None:intergenic 60.0%
CACCAGATGAGCCCTCAGCC+AGG - chr1.3:15417574-15417593 None:intergenic 65.0%
CAGATGAGCCCTCAGCCAGG+AGG - chr1.3:15417571-15417590 None:intergenic 65.0%
CTCCTGGCTGAGGGCTCATC+TGG + chr1.3:15417569-15417588 MS.gene93155:CDS 65.0%
GCACCATCCGTCGGATGTGC+CGG - chr1.3:15416238-15416257 None:intergenic 65.0%
GGCACCACAGCACCATCCGT+CGG - chr1.3:15416247-15416266 None:intergenic 65.0%
!! GGCGGCATAGCGGATATCGG+TGG - chr1.3:15416313-15416332 None:intergenic 65.0%
GAGCCCTCAGCCAGGAGGCT+TGG - chr1.3:15417566-15417585 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 15413917 15417664 15413917 ID=MS.gene93155
chr1.3 mRNA 15413917 15417664 15413917 ID=MS.gene93155.t1;Parent=MS.gene93155
chr1.3 exon 15413917 15414064 15413917 ID=MS.gene93155.t1.exon1;Parent=MS.gene93155.t1
chr1.3 CDS 15413917 15414064 15413917 ID=cds.MS.gene93155.t1;Parent=MS.gene93155.t1
chr1.3 exon 15415411 15415479 15415411 ID=MS.gene93155.t1.exon2;Parent=MS.gene93155.t1
chr1.3 CDS 15415411 15415479 15415411 ID=cds.MS.gene93155.t1;Parent=MS.gene93155.t1
chr1.3 exon 15415584 15415649 15415584 ID=MS.gene93155.t1.exon3;Parent=MS.gene93155.t1
chr1.3 CDS 15415584 15415649 15415584 ID=cds.MS.gene93155.t1;Parent=MS.gene93155.t1
chr1.3 exon 15416913 15417034 15416913 ID=MS.gene93155.t1.exon4;Parent=MS.gene93155.t1
chr1.3 CDS 15416913 15417034 15416913 ID=cds.MS.gene93155.t1;Parent=MS.gene93155.t1
chr1.3 exon 15417153 15417281 15417153 ID=MS.gene93155.t1.exon5;Parent=MS.gene93155.t1
chr1.3 CDS 15417153 15417281 15417153 ID=cds.MS.gene93155.t1;Parent=MS.gene93155.t1
chr1.3 exon 15417551 15417664 15417551 ID=MS.gene93155.t1.exon6;Parent=MS.gene93155.t1
chr1.3 CDS 15417551 15417664 15417551 ID=cds.MS.gene93155.t1;Parent=MS.gene93155.t1
Gene Sequence

>MS.gene93155

ATGGATGTTTCTTCTTCTTCGGCGAGTAACGCCGCTGAGTTCGATTACTTGTTCAAGCTTCTTATGATTGGTGATTCTGGTGTTGGCAAAAGCACGTTGCTTCTTCGATTCACTTCTGATAACTTCGAAGATCTTTCTCCCACTATTGGTTTGTCCACAAAACCCTTGTTTTCACACTTTCATGATGCTTTTTTCCTTTTATTCATGCATTTTGGATGAGATCTCTGTGTTTTTTCAATGTAGTGGTGCTCTAGAATTATTCGTTTGAATTGTTAACACGTACTATTAACATTGATTTTGGTTCTACGGTGACGAAAATTGAATTTGACTTAATTTTTTTCTTTAATTGATTTTGATTAAGAGTTACATAAAGTGGTTTAGGTTTGAATATATTCACGAAAAAAATGATTTTTGTCAATTTATGTTTCGATAGTTTTGATCAGAATTACTTTTGTGTGTTATATATGTCTGCCACTTTGAGTGCATGTTTGAATTCTGAAGCCGTAAGTTTGATTTTGGTATGGTCGGACTCGGAACTGATTTGGTCTCTAGAATTGATTCTGACATAAAGCTAGGTTTGTATTTGTCTCTAAATGTGATTTTGACACTGAAATTTATTGCTTAACTTATTTTAACGATAATGTATCCGAACATTAATCACATTTGAGGTTAGAAGCCGAAGTCAAATCACATTTGACTAACCAAAACGTGATTTTTGGAGGTCTAGACTTGGAACCAAATGTGGGCGAAGCGTCTGTTTGGATCTGTGTTTGGTGTTCACCTAACGTGTGTTTGCGGAACGACCGTGATTTCAGGAAGCTAATAAAGGAAGCTTCTGTAGTAATGCGGTTTGTTGCCATGATTTCAAGAAGAACATGGATCGCCAACGCATATCCAAACAGATGCGAAGACTTATTGTACTTTTTCACGGAAAGACCCTTGAGATGGGAACTTTCGAGGGTTCACTAGGAGGTTTGGTTTGGTTTGGGGTATTCGTATATGATCAAACTAGTAATGACTACTTGCAAGATATTGCATGAATGTAGGGGGAAAGTGACAGGAAAAGTGATGTGAAATTCTATCAAATGGCATCAGTGGAACACTTTTCTTAGTATTGCCTTGTTGTCTCACATGTCCTTTTTTTAGCTTGTTTACTATTTCATTAGCTTTCATTGAGTTCAAATTCTGTCATTTAGTCAACAAAAGAGCTTCTCTCTCATAGTGGGTGTTGGGAGAAATTTAAGGAATCAGAATCGTGGTTGAATCATTATCCATCTTACACTCAATTCTTAAACCTATAATGTTAATATAGACGTAAACAAATTTATATTGCATTGGGGAAGGTCTTGATAAAACCTTTCATTTAAGAAGCCATATGAATGTTACGGTTTGTGTGTGGTCCATGATGCTGTTTTATCATCCCTACCACTCAATTATAGGTTAAAGTATAACTCTACTCATTTATTTGCATCGACTCTTTTGAACATAATGCAGGTGTAGACTTCAAAGTTAAATATGTTACACTTGGTGGAAAGAAGTTAAAACTTGCTATATGGGACACGGGTAATGTAACATGCTGATTCAGTTTATTTTGGAAAGTTGAAATTCTGTTATTTTTTTGGGAGTCATAAGTTAGTTGCATGATTTTGTATTTTCTTCTCGTGCAGCTGGACAGGAAAGGTTTCGAACACTTACTGGTTCATATTATAGAGGTGCACAAGGAATAATTATGGGTATGCTCATTGCTCCTTGATATTCTCCATTTCGTAGCTACCTTTCCTGCTTGCTATACCATGAATATGATGTACAATTTTTTCCTAATTTGTTTGAATGCTTTTATCTTTTTGAACTGTAAATCATGCAACATGGCTACGTGTTAAATACTAATTTCTATTTTATCCCTTGTGTGTTTTTATGGTAAAAAAAAGTAAAAATAGATTCCTGTTATTATACTTTCATAGTTACCATGTATAGCCTAAGCTAATCGATTTTATTTCGAAATTCAGGTATTTATACTATTTCCTCTTGTACATTTCCTTCTAAAATAATAATGATATGTTCATTTTCAAGCTGGTTGATCGCGATTCTTTTTCGAGATTGAAGTGGCTCAGTCAATGAGTGTATTACTTTTTTCAAAAGGAAATATGCCGTCAATATTTTGGATGAAACATGGATACTTGATTGTATACATGTTGATCCTCCTATGCAAATACAGAAGATTTGTTACTAAGTTTCTCATTTTGGCATTTGATAATCATTGGAGTGTAGTTGTTCGAACCCTATAATACCAATGTTATTGATGGCGGAAAGCCAAAAATCCGGCACATCCGACGGATGGTGCTGTGGTGCCGCCATCCTTCACAAATTTGTCATTGCGGTTTTCGGAAAATCCGCCACCGATATCCGCTATGCCGCCATGGCCGATATTTGACAACACTGTATAATACATTATATGATGACGCAATAAAGTATTTCTTTTTATAAGATAGGGTCGTACTAAAGTCATTGCATATATGGATATAAAGATTGGGTTAGAGATGCTTGTAACGTTGTACTTAAAACCTCAAATCTAGGAGGCTATGATACCATGTCATGATCAAATACTTTGAAAGCTTAAACTGTCGGGTGAAGGCACAAAAGATGGTTACTGTATCTTTTGTTTGACTAATAACTAATTCTTCAGGGTCAAGGATTAATTAACGTTGTACTTAAAACCTCAAGATGTATGTACAATATGTATATGAAATATCTTCAAATGCATGAAAGCTGAATAGTGAATTCAAGGGTCAAGGATTCATTAATATTATTGTATCTTTTGCTTTTTGGTTAATATCATATATGATCTCTATGCCATAATCTATTTAAAATATTATTTCAGTGACCTGTTTTGCTTCTAAATGTAATGAGATTGTCTTTTATTCTTTAGCTGTAGTCCCATTTATCTATCAGTCAGTTTATATTATAAACTTATCAGTGAATCTGGGTTGTGAATACAGTATACGATGTAACGCGACGTGAAACATTTACAAATCTATCTGATATATGGGCTAAAGAAATTGACTTATACTCAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGACAAGGTACACCATTTATGAATTTGCATTTGCAATAATTTATTCTACCAAACTTTGTGTTAAGTTTTGATTCACTTCAGTAAAAGTTTGCTTATGAATATAGTTTGCCTATCTCATATTTTAGGAAAGTGAAAGGGCTGTTACCAAAAAGGAAGCGGTGGACTTTGCAAGGCAATATGGGTGCCTCTATACTGAATGCAGTGCAAAAACTCGAGTAAATGTTGAGCAGTGTTTTGAGGAGCTTGTAATGAAGGTACATGTTCACCTCTCCTCATGTCCTCAAAAACATGAAAATAATAAATAAACTCAAGCTTGCTGAAAGTTGGTAATTTTATGTTTTTGTCCTTCCTTGACAATTTTTTCTTGTGAAATATACTTTAAAAAAAAATCGCCTTCAAGTAGTTAAACTTATCAGTAACTCAAAGCACCTACTTGCTTCAAGTTAGTTGCATTAAGTACAAATCAGTATTTTCAGAAAGTGGAAGTAATGTTTCAATTTTGGGATTCCTTTGTTGTTTCCAGATTTTGGATACACCAAGCCTCCTGGCTGAGGGCTCATCTGGTGTGAAAAAGAACATCTTCAAGCAGAAACCGCAAGAGTCTGATGCATCACCTAGCAGCTGTTGCTCATGGTGA

Protein sequence

>MS.gene93155.t1

MDVSSSSASNAAEFDYLFKLLMIGDSGVGKSTLLLRFTSDNFEDLSPTIGVDFKVKYVTLGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERAVTKKEAVDFARQYGCLYTECSAKTRVNVEQCFEELVMKILDTPSLLAEGSSGVKKNIFKQKPQESDASPSSCCSW