AlfalfaGEDB | MS.gene066782

M. sativa cultivar XinJiangDaYe / MS.gene066782

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066782.t1	GAU36126.1	78.1	617	126	5	1	616	444	1052	3.20E-263	917.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066782.t1	A0A2Z6MW28	78.1	617	126	5	1	616	444	1052	2.3e-263	917.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene066782	0.84353	1.32E-58	-1.69E-46
MS.gene049159	MS.gene066782	0.815748	7.89E-52	-1.69E-46
MS.gene049254	MS.gene066782	0.848829	4.78E-60	-1.69E-46
MS.gene049271	MS.gene066782	0.801224	9.96E-49	-1.69E-46
MS.gene049272	MS.gene066782	0.819506	1.12E-52	-1.69E-46
MS.gene049343	MS.gene066782	0.846609	1.95E-59	-1.69E-46
MS.gene049350	MS.gene066782	0.810076	1.38E-50	-1.69E-46
MS.gene049404	MS.gene066782	0.837771	4.27E-57	-1.69E-46
MS.gene049435	MS.gene066782	0.830252	3.26E-55	-1.69E-46
MS.gene049501	MS.gene066782	0.825564	4.38E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 132 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGACCGAGGAAGAAA+TGG	0.468253	5.2:-34527894	MS.gene066782:CDS
AAACATGACTTGAAAGCAAA+GGG	0.504754	5.2:-34527926	MS.gene066782:CDS
AAACTTTATGCGCCTCCCTA+CGG	0.538836	5.2:+34530968	None:intergenic
AAAGGATCTGTACGTTGTCT+TGG	0.502221	5.2:-34526906	MS.gene066782:CDS
AAATAAGTAACATCAACAAA+AGG	0.542008	5.2:-34527712	MS.gene066782:CDS
AACTACAAGTGACAGTGATT+GGG	0.519314	5.2:-34526595	MS.gene066782:CDS
AACTCTTCTATCAGGGATGT+AGG	0.523874	5.2:+34527868	None:intergenic
AAGAGGTTATACCCGAATGT+CGG	0.647233	5.2:-34528334	MS.gene066782:CDS
AAGATAACTTGAGTGCTAAG+TGG	0.581349	5.2:-34527958	MS.gene066782:CDS
AAGATCTAATGTTGAAAATA+GGG	0.362744	5.2:-34526850	MS.gene066782:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGACTTGAAAGCAAA+GGG	-	chr5.2:34529632-34529651	MS.gene066782:intron	30.0%
AAACCATACATCATATGCAA+AGG	+	chr5.2:34529164-34529183	None:intergenic	30.0%
ACCAAACCTAAATGATACAT+AGG	+	chr5.2:34526996-34527015	None:intergenic	30.0%
AGAATTCATATGTGTTGAAG+TGG	-	chr5.2:34529269-34529288	MS.gene066782:intron	30.0%
AGACTCAAGATTCTACAAAT+TGG	-	chr5.2:34530590-34530609	MS.gene066782:intron	30.0%
ATAAGGATTAAGTGTGTGTT+TGG	-	chr5.2:34528116-34528135	MS.gene066782:intron	30.0%
ATACCTTTGCATATGATGTA+TGG	-	chr5.2:34529158-34529177	MS.gene066782:intron	30.0%
ATATAAATTTCAGCTCGTGA+AGG	+	chr5.2:34530348-34530367	None:intergenic	30.0%
ATATGATAGATACCAATGAG+AGG	-	chr5.2:34527925-34527944	MS.gene066782:CDS	30.0%
ATTCTCGTGATTTAATCAAC+AGG	+	chr5.2:34528667-34528686	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	34526587	34530993	34526587	ID=MS.gene066782
chr5.2	mRNA	34526587	34530993	34526587	ID=MS.gene066782.t1;Parent=MS.gene066782
chr5.2	exon	34530853	34530993	34530853	ID=MS.gene066782.t1.exon1;Parent=MS.gene066782.t1
chr5.2	CDS	34530853	34530993	34530853	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34530641	34530775	34530641	ID=MS.gene066782.t1.exon2;Parent=MS.gene066782.t1
chr5.2	CDS	34530641	34530775	34530641	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34530339	34530479	34530339	ID=MS.gene066782.t1.exon3;Parent=MS.gene066782.t1
chr5.2	CDS	34530339	34530479	34530339	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34530129	34530263	34530129	ID=MS.gene066782.t1.exon4;Parent=MS.gene066782.t1
chr5.2	CDS	34530129	34530263	34530129	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34529506	34529646	34529506	ID=MS.gene066782.t1.exon5;Parent=MS.gene066782.t1
chr5.2	CDS	34529506	34529646	34529506	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34528460	34528594	34528460	ID=MS.gene066782.t1.exon6;Parent=MS.gene066782.t1
chr5.2	CDS	34528460	34528594	34528460	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34528137	34528369	34528137	ID=MS.gene066782.t1.exon7;Parent=MS.gene066782.t1
chr5.2	CDS	34528137	34528369	34528137	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34527814	34528032	34527814	ID=MS.gene066782.t1.exon8;Parent=MS.gene066782.t1
chr5.2	CDS	34527814	34528032	34527814	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34527646	34527735	34527646	ID=MS.gene066782.t1.exon9;Parent=MS.gene066782.t1
chr5.2	CDS	34527646	34527735	34527646	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34527155	34527259	34527155	ID=MS.gene066782.t1.exon10;Parent=MS.gene066782.t1
chr5.2	CDS	34527155	34527259	34527155	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34526746	34527042	34526746	ID=MS.gene066782.t1.exon11;Parent=MS.gene066782.t1
chr5.2	CDS	34526746	34527042	34526746	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1
chr5.2	exon	34526587	34526667	34526587	ID=MS.gene066782.t1.exon12;Parent=MS.gene066782.t1
chr5.2	CDS	34526587	34526667	34526587	ID=cds.MS.gene066782.t1;Parent=MS.gene066782.t1

Gene Sequence

>MS.gene066782

ATACCGTAGGGAGGCGCATAAAGTTTAAAGCTGTTGGGAAAGGTGGCAAAGCACATGCTAAAGAGAAGTTAATTGATAGCTCTAATGTAGTCAACCAAAACGACCATCGTATAAACAAAAAGTGTGCGCAACTTGGAGGAGGTAAGAAGTTTTTATTTGCTTAGTTTCTTTCATCTTTTGTCTTGAAGTTTCATTATTTTTTATTTTGAATTCTTTAGATACAAGAGAGAATTTAATGGTAGCAAGTCCATGTCACCAAAATCATGAATCACAATCAGAACAGCAAATACAAGTGGGACGTCGTGCTGAATATCCTATTTCTTTTGGTAGAATAGGTCAAAGTCTACCGAAAGGTAAGTGTAGTGTTTGTTAAAAATAAATGTGCAGGTATTTTCTTATATGTTTACCTATGTATCATTTAGGTTTGGTCTTGTAAAGAATTGTTTATCAACCTTGATTTTTTTATCTTTTAAACCAATTGTAAAAAATTAAAAAATAATTTGATTATGAATAGATACCATGGGGAGGTACAAAAGATTGAATGCTGTTAGAAAAAGTGGCAAAGCACAGGCTGAAGACCAATTAATTGATAGCTCTAAGGCAGTCAACCAAAATAACTACAATATAAGTGAAAAGTGTGCACAATCTGGAGGAGGTATGAAAATTAACTCTGTTAAGTTTCTTTCTTCCTTTTGAAGTTCCATGCTTTTTGATTTTGAATTCTTTATAGTATCTACAAGAAGGAGCCTAATGGTAGCAAGTCTTAACCACCAAAATGGCCAATCACAATCAGAACAAGTACAAGTGGGAAGTCATGTGGAATCTCCTACTTCATTTGGTAGAATGAGTAAAAGATTACTTAAAGGTAAGGGCCTGTTTGAATAGTGTTTTTAAAATTTTGTTTTCTATTTTTAAATACTACTATAAAAGAAGAAAATCTGATGAAATGGTTTCAAAATTCTTTTACAAAACTGAATCCTGTTTCATCATTTTAAAAACTAAGAACAAAAGTATTTATTTCCTCGTGTATAAATATTTTTTACCAAGCAAGTTTTTTTATTTCCTTGTTTATCAATTGGTTTATTTATTTTGTCCTCTAAAATCGTTTTTAAAAATTGATTTATACTATAGTTTACAAGAACCAAAGTCCAAAACACAATCAAACAAGCCCCAAGAGTATTGTTTTTTCTAAAATTATGTAAGTAATTTTGGTATTATTACATGTGTATCATTTAGGTTAGAATACACAATCATTGTAATCAATTGTGTGCGAACCATAATTTTTTTTTTTATCTTTTAAACCACTTGTAGACATTAAAAAATAAATTGGCTTTTTATATATGATAGATACCAATGAGAGGAACAAAAGGCCGAATGTTGTTCGAAAAAGTGGGAGACTACAAGCTGAAAAGCAATTAATTGATAGCTCTATTGAAGTCAACCAAAACAACCACAATATAAATGAAGAGTGTGACCAATTTGTTGGAGGTATGAAATTTTTGTTTGCTCAGTTTTTGTTAGGAAATAGGATAAGGATTAAGTGTGTGTTTGGTTGTGCGGTGGCGAGAATTGAGTCTGATAGAATTGATTTTGAGAGAATTGATTTAGTTAAAAGTGAGTTGAGTGTAAATTGATTTATGTTTGGATACATTTATGTAAGATTGATTCTTATCAATTCATGTTGTTTGGATAGTTTGAATTAAAATTGCTTTTGGATGTGAAATTACCAAAATGGACTTTAATTTTTTCTTTAAAAAGTTATTCAAGACTTAATTGTACAAATTGTTAAAGGGCAAATACATAATAAATGAAAGTGTAGCACCATAAATGCTTGGAATCAATTCTAATAAACGTAGAAGCTACACATTCTTGCTTCAGCTTGAATCGATTTTGGCCCCCAAAATCACGTTAAATGCTTGATATCCAAGCATATATATTTACACCAAATTTTCTTTTAGAAAGTAATAAGTAGTTAGTTAGAAAGTATCATTTGTACAATACATGTATAGAAGATTCATTTGTTATACATGATACTTCCTATCTAGTCAATCACTACCTTTATCCCTATATACAGAACCCTGTTGATTAAATCACGAGAATTAAGAAAGTTAGTAGTCATATCAAATTTGTTGACAATTAGTATTGTTCTACAAGCTTACCATTCAGGAGAGAGAACTAGTTTATGGATTTGGATCCTCTCCAACAAAGAAAAATGAGTGTGAGAGGAGAGAGAGAAAAGAGAAAATTTGAGAAAAAGGTTAAGAAAGTGAAAATGTTGGAGAGGGATCGAGAGAAGTTTCATTGTAGAGGATGTAATTCCTTATCCTATATCATAACAGTTTCTTTTATACTTTTGTCTTGAAGTTTCATAATTTTTTATTTTGAATTCTTCATAGTAGATACAAGAGGAAATCCAGTGGTAGCAAGTCCTAATCTCCAAAGTGACCAATCACAATCAGAGCAACAAATACCAGTGGAAAATCATGTTGAAACTCCTAATTCTGTTAGTAGAATGAGTAAAAGTTTAACTAAAGGTAACTGTTTGAATTTTTAAAATAAATATGTAAGTATATACCTTTGCATATGATGTATGGTTTGTAACGTGACATCCATACATGATTTAGGTCAGAAGAGGGTAAGAGGTTATACCCGAATGTCGGATGTGTGGAATCTACCAGATGGAGAATTCATATGTGTTGAAGTGGATACTTTAGGTAATCCTATAGGGTGGGAAGGTAAAAAACTTTTAAATGCACTGGGCTGCTTGGTAAGGAAGCACGAATATGCTCCCATCAATATTCTAAGCTGGAAAGACATGCCAGAGTTGAACATAACTAATATGTTTGAGTGGATACAGGTCTTGTAAATTTTTAAGTTCTGTTTGATTTCACTCTTTGAACATTCCTTTTTACTGTATGTCTTACGATTTTTATTTTTTTTTGCTAATTATCTCAATAATAGAGTAAGTTTCACTTTGTTCCTGAATTGACCGAGCAAACAAAGCAAATACTAAAAGATAACTTGAGTGCTAAGTGGAGGCAATTCAAACATGACTTGAAAGCAAAGGGATATGATGAAAACAAGACCGAGGAAGAAATGGCTGCCTACATCCCTGATAGAAGAGTTGATCCTTCTCAATATCGTGCTTTAGTACATCATTGGTGTTCCAAGGAGGGAAAGGTACATCTCTAATGTCATTGACCTTCACTATATATAGAAGTTATGTACAACACTGACTTTTTTATTTCCATGTTAAAGAAAATAAGTAACATCAACAAAAGGAATCGCTCAAAATACGAGGATTTTCATTGCATGGGAACCAAGAGTCTTCCAAGGTTCATTCACGAGGTGGTTTATTTCATTATTGTTTCTTTGTTTACCTGTCAACAACAACCAAGCCTTATCCCACTAAGTGGGGTCGGCTACATGAATCAAACGACGCCATAGTGTTCTATCAAAAATCATGTCTTTGTTTACTTATATGAGTAATATGTTTTTAATTGTAATGTTAGCAATACTCTTATTTAAACCCTGTTGTACACATTTTATGTTTTGTTTATTACTGAAAAAGTGGGTACATTTTTTTATAAGTGATCAACTAAATTGACATTTTCTAAAAATGAATCAACCATGAAGAGTGCAATCAAAAGTGTGTTAAAAAGAGTGTTAGTGTTCTCATTTTATAATTATTTCTTAATATGAATGGGATTTGACATTTTTATTTCAAATGTTAGACAACTGAGGCTAATGGAGCACAACCTTCACGAGCTGAAATTTATATTGAGACTCGTACTCGTAAAGATGGCAGTATTGTGAATGAGAAGGCAGCTAATGTGATTGTAAGAATTTGAATTTTCAGGAATAAATTGAATTGCCGATGATTGAAGCTATTGATTGTAATGCATTGCAGTTGAACTGTACATAGTAAGTTTTGTCTTATATTTTGTGTAGGGTGAATTAAAAAAGCATATGGTGGAGGCAACAAGTTCACGAACTCCTCAAAAGACTCAAGATTCTACAAATTGGGAGAATGACGTATACTCAAGAGTAAGAGGCCCTGAAAGGAAAGGATCTGTACGTTGTCTTGGCAAGGTTCCACGTCATTCAAGTGGTTCATCTCGAAGATCTAATGTTGAAAATAGGGTCCACAAATTAGAAAATTTGCTTGGGAATCTTGTTTCTGTTCTTCAAACACGATTTTCAGCAGACGAACAAATTAATGATGTTTTGCAAGCTATAGCTCAAGAGGTATAAATTCCTATAATTCAACTTTTTGAAGAAATTTAACTATGATATGAAATAATGATTATGATGATTTACACTTAGGTACCTAATGCTCCAAGTACTCCTAATGATTTCTCTAGTAAGGATCAGCCAACTACAAGTGACAGTGATTGGGAAAATTGA

Protein sequence

>MS.gene066782.t1

IPUGGAUSLKLLGKVAKHMLKRSULIALMUSTKTTIVUTKSVRNLEEIQERIUWUQVHVTKIMNHNQNSKYKWDVVLNILFLLVEUVKVYRKIPWGGTKDUMLLEKVAKHRLKTNULIALRQSTKITTIUVKSVHNLEEYLQEGAUWUQVLTTKMANHNQNKYKWEVMWNLLLHLVEUVKDYLKIPMRGTKGRMLFEKVGDYKLKSNULIALLKSTKTTTIUMKSVTNLLEIQEEIQWUQVLISKVTNHNQSNKYQWKIMLKLLILLVEUVKVULKVRRGUEVIPECRMCGIYQMENSYVLKWILUVILUGGKVKNFUMHWAAWUGSTNMLPSIFUAGKTCQSUTULICLSGYRVSFTLFLNUPSKQSKYUKITUVLSGGNSNMTUKQRDMMKTRPRKKWLPTSLIEELILLNIVLUYIIGVPRRERKUVTSTKGIAQNTRIFIAWEPRVFQGSFTRQLRLMEHNLHELKFILRLVLVKMAVLUMRRQLMULVNUKSIWWRQQVHELLKRLKILQIGRMTYTQEUEALKGKDLYVVLARFHVIQVVHLEDLMLKIGSTNUKICLGILFLFFKHDFQQTNKLMMFCKLULKRYLMLQVLLMISLVRISQLQVTVIGKI