Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55818.t1 | XP_013447225.1 | 94.3 | 175 | 4 | 1 | 1 | 175 | 1 | 169 | 4.10E-62 | 247.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55818.t1 | O65155 | 48.0 | 173 | 81 | 2 | 3 | 175 | 2 | 165 | 5.6e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55818.t1 | A0A072TUY7 | 94.3 | 175 | 4 | 1 | 1 | 175 | 1 | 169 | 2.9e-62 | 247.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene55818 | 0.825848 | 3.75E-54 | -1.69E-46 |
| MS.gene04918 | MS.gene55818 | 0.823798 | 1.14E-53 | -1.69E-46 |
| MS.gene04919 | MS.gene55818 | 0.802013 | 6.86E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene55818 | 0.817425 | 3.32E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene55818 | 0.837542 | 4.89E-57 | -1.69E-46 |
| MS.gene049350 | MS.gene55818 | 0.835899 | 1.28E-56 | -1.69E-46 |
| MS.gene049441 | MS.gene55818 | 0.809746 | 1.63E-50 | -1.69E-46 |
| MS.gene049666 | MS.gene55818 | 0.815682 | 8.16E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene55818 | 0.851688 | 7.54E-61 | -1.69E-46 |
| MS.gene049807 | MS.gene55818 | 0.816429 | 5.56E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene55818 | 0.838371 | 2.99E-57 | -1.69E-46 |
| MS.gene049825 | MS.gene55818 | 0.845393 | 4.18E-59 | -1.69E-46 |
| MS.gene049873 | MS.gene55818 | 0.825343 | 4.94E-54 | -1.69E-46 |
| MS.gene05045 | MS.gene55818 | 0.801304 | 9.59E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene55818 | 0.814815 | 1.27E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene55818 | 0.803298 | 3.73E-49 | -1.69E-46 |
| MS.gene050828 | MS.gene55818 | 0.821837 | 3.27E-53 | -1.69E-46 |
| MS.gene050945 | MS.gene55818 | 0.812148 | 4.90E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene55818 | 0.804175 | 2.45E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene55818 | 0.800467 | 1.42E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene55818 | 0.814145 | 1.79E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene55818 | 0.803649 | 3.15E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene55818 | 0.800437 | 1.44E-48 | -1.69E-46 |
| MS.gene051700 | MS.gene55818 | 0.833355 | 5.59E-56 | -1.69E-46 |
| MS.gene051719 | MS.gene55818 | 0.813504 | 2.47E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene55818 | 0.822554 | 2.23E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene55818 | 0.852002 | 6.14E-61 | -1.69E-46 |
| MS.gene051791 | MS.gene55818 | 0.835641 | 1.49E-56 | -1.69E-46 |
| MS.gene051832 | MS.gene55818 | 0.811543 | 6.64E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene55818 | 0.826039 | 3.38E-54 | -1.69E-46 |
| MS.gene052072 | MS.gene55818 | 0.818939 | 1.51E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene55818 | 0.805912 | 1.06E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene55818 | 0.821987 | 3.01E-53 | -1.69E-46 |
| MS.gene052533 | MS.gene55818 | 0.828632 | 8.07E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene55818 | 0.813139 | 2.98E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene55818 | 0.828164 | 1.05E-54 | -1.69E-46 |
| MS.gene052717 | MS.gene55818 | 0.805878 | 1.08E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene55818 | 0.803079 | 4.14E-49 | -1.69E-46 |
| MS.gene052793 | MS.gene55818 | 0.807703 | 4.44E-50 | -1.69E-46 |
| MS.gene053122 | MS.gene55818 | 0.849085 | 4.05E-60 | -1.69E-46 |
| MS.gene053226 | MS.gene55818 | 0.879303 | 1.39E-69 | -1.69E-46 |
| MS.gene053272 | MS.gene55818 | -0.808894 | 2.47E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene55818 | 0.806641 | 7.45E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene55818 | 0.810657 | 1.03E-50 | -1.69E-46 |
| MS.gene05365 | MS.gene55818 | 0.809984 | 1.44E-50 | -1.69E-46 |
| MS.gene054142 | MS.gene55818 | 0.838664 | 2.51E-57 | -1.69E-46 |
| MS.gene054222 | MS.gene55818 | 0.803701 | 3.07E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene55818 | 0.800422 | 1.45E-48 | -1.69E-46 |
| MS.gene05458 | MS.gene55818 | 0.824612 | 7.35E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene55818 | 0.82675 | 2.29E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene55818 | 0.806219 | 9.15E-50 | -1.69E-46 |
| MS.gene054967 | MS.gene55818 | 0.824024 | 1.01E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene55818 | 0.81527 | 1.01E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene55818 | 0.800449 | 1.43E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene55818 | 0.827404 | 1.59E-54 | -1.69E-46 |
| MS.gene055555 | MS.gene55818 | 0.845225 | 4.64E-59 | -1.69E-46 |
| MS.gene055580 | MS.gene55818 | -0.819758 | 9.81E-53 | -1.69E-46 |
| MS.gene055586 | MS.gene55818 | 0.808948 | 2.41E-50 | -1.69E-46 |
| MS.gene055589 | MS.gene55818 | 0.804084 | 2.56E-49 | -1.69E-46 |
| MS.gene055694 | MS.gene55818 | 0.813563 | 2.40E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene55818 | 0.805004 | 1.65E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene55818 | -0.806568 | 7.72E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene55818 | 0.829367 | 5.36E-55 | -1.69E-46 |
| MS.gene056082 | MS.gene55818 | 0.808241 | 3.41E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene55818 | 0.807379 | 5.20E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene55818 | 0.809538 | 1.80E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene55818 | 0.808091 | 3.67E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene55818 | 0.807254 | 5.53E-50 | -1.69E-46 |
| MS.gene056509 | MS.gene55818 | 0.801518 | 8.67E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene55818 | 0.80457 | 2.03E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene55818 | 0.827953 | 1.18E-54 | -1.69E-46 |
| MS.gene05689 | MS.gene55818 | 0.828227 | 1.01E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene55818 | 0.803965 | 2.71E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene55818 | 0.885813 | 5.88E-72 | -1.69E-46 |
| MS.gene057208 | MS.gene55818 | 0.827187 | 1.80E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene55818 | 0.818909 | 1.53E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene55818 | 0.800948 | 1.13E-48 | -1.69E-46 |
| MS.gene058668 | MS.gene55818 | 0.812567 | 3.97E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene55818 | 0.809114 | 2.22E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene55818 | 0.823223 | 1.56E-53 | -1.69E-46 |
| MS.gene059227 | MS.gene55818 | 0.816162 | 6.37E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene55818 | 0.823499 | 1.34E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene55818 | 0.825515 | 4.50E-54 | -1.69E-46 |
| MS.gene05985 | MS.gene55818 | -0.862101 | 6.43E-64 | -1.69E-46 |
| MS.gene059900 | MS.gene55818 | -0.804742 | 1.87E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene55818 | 0.830732 | 2.49E-55 | -1.69E-46 |
| MS.gene059965 | MS.gene55818 | 0.802913 | 4.48E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene55818 | 0.85168 | 7.58E-61 | -1.69E-46 |
| MS.gene060429 | MS.gene55818 | 0.82144 | 4.03E-53 | -1.69E-46 |
| MS.gene060525 | MS.gene55818 | 0.809274 | 2.05E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene55818 | 0.804316 | 2.29E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene55818 | 0.823435 | 1.39E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene55818 | 0.821603 | 3.70E-53 | -1.69E-46 |
| MS.gene06094 | MS.gene55818 | 0.810038 | 1.41E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene55818 | 0.837011 | 6.69E-57 | -1.69E-46 |
| MS.gene061160 | MS.gene55818 | 0.818937 | 1.51E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene55818 | 0.839824 | 1.26E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55818.t1 | MTR_8g099650 | 93.143 | 175 | 6 | 1 | 1 | 175 | 1 | 169 | 1.21e-96 | 277 |
| MS.gene55818.t1 | MTR_8g099650 | 91.781 | 146 | 6 | 1 | 1 | 146 | 1 | 140 | 1.04e-74 | 220 |
| MS.gene55818.t1 | MTR_3g096690 | 49.296 | 71 | 35 | 1 | 101 | 171 | 37 | 106 | 1.43e-19 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55818.t1 | AT4G10920 | 51.852 | 162 | 69 | 3 | 14 | 175 | 13 | 165 | 3.12e-49 | 157 |
| MS.gene55818.t1 | AT4G10920 | 51.852 | 162 | 69 | 3 | 14 | 175 | 13 | 165 | 3.12e-49 | 157 |
| MS.gene55818.t1 | AT5G09250 | 44.928 | 69 | 38 | 0 | 101 | 169 | 36 | 104 | 1.51e-19 | 79.3 |
| MS.gene55818.t1 | AT5G09250 | 46.032 | 63 | 34 | 0 | 106 | 168 | 44 | 106 | 3.41e-16 | 70.9 |
| MS.gene55818.t1 | AT5G09250 | 32.632 | 95 | 59 | 1 | 61 | 155 | 1 | 90 | 2.93e-15 | 68.6 |
| MS.gene55818.t1 | AT4G00980 | 31.138 | 167 | 98 | 3 | 9 | 175 | 19 | 168 | 1.06e-14 | 71.2 |
| MS.gene55818.t1 | AT5G09240 | 42.424 | 66 | 36 | 1 | 105 | 168 | 39 | 104 | 4.01e-13 | 62.8 |
| MS.gene55818.t1 | AT5G09250 | 47.826 | 46 | 24 | 0 | 101 | 146 | 36 | 81 | 3.02e-12 | 60.1 |
| MS.gene55818.t1 | AT5G09250 | 47.826 | 46 | 24 | 0 | 101 | 146 | 36 | 81 | 3.02e-12 | 60.1 |
Find 32 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACAAGCCATTCAGAAAA+AGG | 0.298415 | 4.3:-4392873 | MS.gene55818:CDS |
| TTCGATTCTTCCTTTGGTTT+CGG | 0.299411 | 4.3:+4395678 | None:intergenic |
| TGAGGCTTGCTTTCGAATCT+TGG | 0.308290 | 4.3:+4395603 | None:intergenic |
| TGTTTCTTCGATTCTTCCTT+TGG | 0.317008 | 4.3:+4395672 | None:intergenic |
| CGTCCATGTTTGATTCTTGA+AGG | 0.351225 | 4.3:+4395638 | None:intergenic |
| AAAGAGAAAGGTGACAATTC+AGG | 0.366183 | 4.3:-4395233 | MS.gene55818:CDS |
| AAAGCAAGCCTCAAATGAAT+TGG | 0.387647 | 4.3:-4395593 | MS.gene55818:CDS |
| AGCACTGTTTATGATGATTC+CGG | 0.391789 | 4.3:-4395400 | MS.gene55818:CDS |
| CTTGGTATAAAACTCTCTAA+TGG | 0.394017 | 4.3:+4395186 | None:intergenic |
| AAAGAACTTCCTTCTTCTAA+AGG | 0.401625 | 4.3:-4395157 | MS.gene55818:intron |
| TGAATGGCTTGTTCTATGTC+AGG | 0.401909 | 4.3:+4392881 | None:intergenic |
| TTGCTTTCGAATCTTGGATT+CGG | 0.412374 | 4.3:+4395609 | None:intergenic |
| AGGAAGTTCTTTGCCATCCT+TGG | 0.414306 | 4.3:+4395168 | None:intergenic |
| CTTTGAAGGGAGGCTGAGAT+AGG | 0.417924 | 4.3:+4395563 | None:intergenic |
| TTGCTTGACGAAGGCTTTGA+AGG | 0.429051 | 4.3:+4395549 | None:intergenic |
| AGAAGAAGAAGAGAAACAAC+AGG | 0.454315 | 4.3:-4395449 | MS.gene55818:CDS |
| ACAACTTTACCTTTAGAAGA+AGG | 0.476393 | 4.3:+4395148 | None:intergenic |
| GCAGCAAGAACAACAGAAAG+AGG | 0.479297 | 4.3:-4395500 | MS.gene55818:CDS |
| GTTAAGATCCAATTCATTTG+AGG | 0.479566 | 4.3:+4395585 | None:intergenic |
| GTGACAATTCAGGATTTCAA+AGG | 0.497487 | 4.3:-4395223 | MS.gene55818:CDS |
| TGACAATTCAGGATTTCAAA+GGG | 0.528976 | 4.3:-4395222 | MS.gene55818:CDS |
| TTCAGGAATAAGTTTGACTC+AGG | 0.531614 | 4.3:-4392933 | MS.gene55818:intron |
| TTCGATGATTTGCTTGACGA+AGG | 0.545920 | 4.3:+4395540 | None:intergenic |
| TGCTTGACGAAGGCTTTGAA+GGG | 0.552385 | 4.3:+4395550 | None:intergenic |
| GAAACAACAGGTTAAACAAG+AGG | 0.566821 | 4.3:-4395437 | MS.gene55818:CDS |
| TTGACGAAGGCTTTGAAGGG+AGG | 0.568942 | 4.3:+4395553 | None:intergenic |
| ATGGATGACGCCGAAACCAA+AGG | 0.594413 | 4.3:-4395688 | MS.gene55818:CDS |
| CTCGCAGATGACTAGATCAC+CGG | 0.601997 | 4.3:+4395381 | None:intergenic |
| TAAGTTTGACTCAGGAGCAG+TGG | 0.602755 | 4.3:-4392925 | MS.gene55818:CDS |
| AAACAACAGGTTAAACAAGA+GGG | 0.617440 | 4.3:-4395436 | MS.gene55818:CDS |
| GATCCTTCAAGAATCAAACA+TGG | 0.657064 | 4.3:-4395641 | MS.gene55818:CDS |
| CGGTGATCTAGTCATCTGCG+AGG | 0.722262 | 4.3:-4395380 | MS.gene55818:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTTGAAAATGATAA+AGG | - | chr4.3:4394359-4394378 | MS.gene55818:intron | 10.0% |
| !! | AATGTTTCTTAGATATTAAA+TGG | + | chr4.3:4394825-4394844 | None:intergenic | 15.0% |
| !! | GTCATATTATATAAAAGAAA+TGG | + | chr4.3:4393800-4393819 | None:intergenic | 15.0% |
| !! | TCATATATAATTTAGCAAAT+AGG | - | chr4.3:4395257-4395276 | MS.gene55818:intron | 15.0% |
| !! | TTAATATCTAAGAAACATTA+GGG | - | chr4.3:4394826-4394845 | MS.gene55818:intron | 15.0% |
| !! | TTCATACAAAAAAAAAATCA+TGG | + | chr4.3:4394269-4394288 | None:intergenic | 15.0% |
| !! | TTCTACCTATTTATAATAAA+AGG | + | chr4.3:4394336-4394355 | None:intergenic | 15.0% |
| !! | TTTAATATCTAAGAAACATT+AGG | - | chr4.3:4394825-4394844 | MS.gene55818:intron | 15.0% |
| !!! | AAACACCTTTTATTATAAAT+AGG | - | chr4.3:4394328-4394347 | MS.gene55818:intron | 15.0% |
| !!! | AAGTATATCTACTTTTAATA+TGG | - | chr4.3:4394616-4394635 | MS.gene55818:intron | 15.0% |
| !! | AAAGAAAAAAAACATGAGTA+TGG | - | chr4.3:4394507-4394526 | MS.gene55818:intron | 20.0% |
| !! | AGACTAATTGATAGAAATTA+TGG | + | chr4.3:4393461-4393480 | None:intergenic | 20.0% |
| !! | ATTTCGATTCAAATGTTTAT+TGG | - | chr4.3:4395433-4395452 | MS.gene55818:CDS | 20.0% |
| !! | GAAACACAAAAATTAGAATT+TGG | + | chr4.3:4395597-4395616 | None:intergenic | 20.0% |
| !! | TGTGCAAGTTAATAATAATT+TGG | + | chr4.3:4393667-4393686 | None:intergenic | 20.0% |
| !!! | AATGCAGTTTTGAATAAATA+GGG | + | chr4.3:4394000-4394019 | None:intergenic | 20.0% |
| !!! | AATTCTAATTTTTGTGTTTC+AGG | - | chr4.3:4395597-4395616 | MS.gene55818:CDS | 20.0% |
| !!! | ATAATATGACATTGATTTTC+AGG | - | chr4.3:4393810-4393829 | MS.gene55818:intron | 20.0% |
| !!! | ATCTACTTTTAATATGGTAT+TGG | - | chr4.3:4394622-4394641 | MS.gene55818:intron | 20.0% |
| !!! | ATTTTAATGCCAAACTTAAA+AGG | + | chr4.3:4395106-4395125 | None:intergenic | 20.0% |
| !!! | GCTAATTAGCTTAAATTTAA+CGG | + | chr4.3:4393527-4393546 | None:intergenic | 20.0% |
| !!! | GTTTTATCTATAACTTTTCA+CGG | + | chr4.3:4395402-4395421 | None:intergenic | 20.0% |
| !!! | TAAGTTCTAACTAGTAAAAT+TGG | + | chr4.3:4395032-4395051 | None:intergenic | 20.0% |
| ! | AATCTATACAGTTTGAACTT+TGG | - | chr4.3:4394747-4394766 | MS.gene55818:intron | 25.0% |
| ! | ACTACTCATACTATCATATA+GGG | + | chr4.3:4395186-4395205 | None:intergenic | 25.0% |
| ! | AGATTTCATCTTTCATTCTA+AGG | + | chr4.3:4393644-4393663 | None:intergenic | 25.0% |
| ! | ATAGTTACGTTCTATAATTG+AGG | - | chr4.3:4395564-4395583 | MS.gene55818:CDS | 25.0% |
| ! | ATTAGGGTTCAAAATAAGTT+GGG | - | chr4.3:4394842-4394861 | MS.gene55818:intron | 25.0% |
| ! | ATTTCTTGACAATAGAACTT+AGG | + | chr4.3:4393699-4393718 | None:intergenic | 25.0% |
| ! | CCAAAATAATAATGTTAACC+AGG | + | chr4.3:4393273-4393292 | None:intergenic | 25.0% |
| ! | GAGAGTAAAAAATTACGAAA+CGG | + | chr4.3:4393194-4393213 | None:intergenic | 25.0% |
| ! | TAACGATGAAATCAATTCAT+GGG | - | chr4.3:4393235-4393254 | MS.gene55818:intron | 25.0% |
| ! | TACTACTCATACTATCATAT+AGG | + | chr4.3:4395187-4395206 | None:intergenic | 25.0% |
| ! | TAGTTACGTTCTATAATTGA+GGG | - | chr4.3:4395565-4395584 | MS.gene55818:CDS | 25.0% |
| ! | TCTTAATTAATACTCGATGT+GGG | - | chr4.3:4394110-4394129 | MS.gene55818:intron | 25.0% |
| ! | TGAACAGAGTTAAGTAATAT+TGG | + | chr4.3:4394878-4394897 | None:intergenic | 25.0% |
| ! | TTAACGATGAAATCAATTCA+TGG | - | chr4.3:4393234-4393253 | MS.gene55818:intron | 25.0% |
| ! | TTATTCAAAACTGCATTCTA+AGG | - | chr4.3:4394003-4394022 | MS.gene55818:intron | 25.0% |
| ! | TTGTCAAGAAATATCAAGAT+TGG | - | chr4.3:4393707-4393726 | MS.gene55818:intron | 25.0% |
| !! | AGTAGATATACTTGTGATTT+TGG | + | chr4.3:4394609-4394628 | None:intergenic | 25.0% |
| !! | ATTGGATTAGAAACAGTTAA+AGG | - | chr4.3:4393725-4393744 | MS.gene55818:intron | 25.0% |
| !! | CCTGGTTAACATTATTATTT+TGG | - | chr4.3:4393270-4393289 | MS.gene55818:intron | 25.0% |
| !! | GCTTATATGAACCTTTAAAA+AGG | + | chr4.3:4394201-4394220 | None:intergenic | 25.0% |
| !! | GCTTATTTAGTGCTAAATTT+TGG | - | chr4.3:4395142-4395161 | MS.gene55818:intron | 25.0% |
| !!! | AAATGATAAAGGCATTGAAA+TGG | - | chr4.3:4394370-4394389 | MS.gene55818:intron | 25.0% |
| !!! | GAATGCAGTTTTGAATAAAT+AGG | + | chr4.3:4394001-4394020 | None:intergenic | 25.0% |
| AAACAACAGGTTAAACAAGA+GGG | - | chr4.3:4393111-4393130 | MS.gene55818:intron | 30.0% | |
| AAAGAACTTCCTTCTTCTAA+AGG | - | chr4.3:4393390-4393409 | MS.gene55818:intron | 30.0% | |
| AAATAGGGAATCTATGCAAT+TGG | + | chr4.3:4393985-4394004 | None:intergenic | 30.0% | |
| AAGTTCTTGAGTCACTAATT+TGG | + | chr4.3:4394423-4394442 | None:intergenic | 30.0% | |
| ACCAAGAAATTCAGAAAAGA+TGG | - | chr4.3:4395287-4395306 | MS.gene55818:intron | 30.0% | |
| AGAACAATAGAGAGAAGAAA+GGG | - | chr4.3:4393921-4393940 | MS.gene55818:intron | 30.0% | |
| ATAACATGACTACATGAGTA+TGG | - | chr4.3:4394474-4394493 | MS.gene55818:intron | 30.0% | |
| ATATTAAATGGAGCACAACA+AGG | + | chr4.3:4394813-4394832 | None:intergenic | 30.0% | |
| CACATCGAGTATTAATTAAG+AGG | + | chr4.3:4394111-4394130 | None:intergenic | 30.0% | |
| CATGATAAAAATTAGTCCAC+CGG | - | chr4.3:4395359-4395378 | MS.gene55818:intron | 30.0% | |
| CATTAGGGTTCAAAATAAGT+TGG | - | chr4.3:4394841-4394860 | MS.gene55818:intron | 30.0% | |
| CTACTCATACTATCATATAG+GGG | + | chr4.3:4395185-4395204 | None:intergenic | 30.0% | |
| CTCTTAATTAATACTCGATG+TGG | - | chr4.3:4394109-4394128 | MS.gene55818:intron | 30.0% | |
| CTTGGTATAAAACTCTCTAA+TGG | + | chr4.3:4393364-4393383 | None:intergenic | 30.0% | |
| GAAATCAATTCATGGGAAAA+GGG | - | chr4.3:4393242-4393261 | MS.gene55818:intron | 30.0% | |
| GACACGATGATCTATATATT+TGG | - | chr4.3:4394448-4394467 | MS.gene55818:intron | 30.0% | |
| GGAAACATCTTATGAACTTA+TGG | + | chr4.3:4393440-4393459 | None:intergenic | 30.0% | |
| GTTAAGATCCAATTCATTTG+AGG | + | chr4.3:4392965-4392984 | None:intergenic | 30.0% | |
| GTTAAGTAATATTGGCAACA+AGG | + | chr4.3:4394870-4394889 | None:intergenic | 30.0% | |
| TAGTTAGAACTTAGATGTCT+CGG | - | chr4.3:4395039-4395058 | MS.gene55818:intron | 30.0% | |
| TATTAAATGGAGCACAACAA+GGG | + | chr4.3:4394812-4394831 | None:intergenic | 30.0% | |
| TCTTAAAAGCTAGCTATCAA+GGG | - | chr4.3:4394073-4394092 | MS.gene55818:intron | 30.0% | |
| TGAAATCAATTCATGGGAAA+AGG | - | chr4.3:4393241-4393260 | MS.gene55818:intron | 30.0% | |
| TGAATCGAAATCTCTGTTAA+TGG | + | chr4.3:4395424-4395443 | None:intergenic | 30.0% | |
| TGACAATTCAGGATTTCAAA+GGG | - | chr4.3:4393325-4393344 | MS.gene55818:intron | 30.0% | |
| TTAAAAGGAAGTTCTCAACT+GGG | + | chr4.3:4395091-4395110 | None:intergenic | 30.0% | |
| TTAGGGTTCAAAATAAGTTG+GGG | - | chr4.3:4394843-4394862 | MS.gene55818:intron | 30.0% | |
| TTCAGATTGTCATTGTTGAT+AGG | + | chr4.3:4394243-4394262 | None:intergenic | 30.0% | |
| ! | ACAACTTTACCTTTAGAAGA+AGG | + | chr4.3:4393402-4393421 | None:intergenic | 30.0% |
| ! | ACCATCTTTTCTGAATTTCT+TGG | + | chr4.3:4395291-4395310 | None:intergenic | 30.0% |
| ! | ATCATAAACAGTGCTTTTGT+TGG | + | chr4.3:4393142-4393161 | None:intergenic | 30.0% |
| ! | GAATTGATTTCATCGTTAAC+CGG | + | chr4.3:4393233-4393252 | None:intergenic | 30.0% |
| ! | TGAACCTTTAAAAAGGAACA+CGG | + | chr4.3:4394194-4394213 | None:intergenic | 30.0% |
| !! | CATTAGAGAGTTTTATACCA+AGG | - | chr4.3:4393362-4393381 | MS.gene55818:intron | 30.0% |
| !!! | AAGATGGTTAGTGTTGTTTT+AGG | - | chr4.3:4395303-4395322 | MS.gene55818:intron | 30.0% |
| !!! | TGAGAACTTCCTTTTAAGTT+TGG | - | chr4.3:4395094-4395113 | MS.gene55818:intron | 30.0% |
| !!! | TTTTAATATGGTATTGGCCT+TGG | - | chr4.3:4394628-4394647 | MS.gene55818:intron | 30.0% |
| AAAGAGAAAGGTGACAATTC+AGG | - | chr4.3:4393314-4393333 | MS.gene55818:intron | 35.0% | |
| AAAGCAAGCCTCAAATGAAT+TGG | - | chr4.3:4392954-4392973 | MS.gene55818:intron | 35.0% | |
| AAATTTAACGGCCAAGGATA+AGG | + | chr4.3:4393515-4393534 | None:intergenic | 35.0% | |
| AAGCTAATTAGCAAAAAGCG+AGG | - | chr4.3:4393535-4393554 | MS.gene55818:intron | 35.0% | |
| AATTTAACGGCCAAGGATAA+GGG | + | chr4.3:4393514-4393533 | None:intergenic | 35.0% | |
| AGAACAAGCCATTCAGAAAA+AGG | - | chr4.3:4395674-4395693 | MS.gene55818:CDS | 35.0% | |
| AGAAGAAGAAGAGAAACAAC+AGG | - | chr4.3:4393098-4393117 | MS.gene55818:intron | 35.0% | |
| AGCACTGTTTATGATGATTC+CGG | - | chr4.3:4393147-4393166 | MS.gene55818:intron | 35.0% | |
| ATAAAAATTAGTCCACCGGT+TGG | - | chr4.3:4395363-4395382 | MS.gene55818:intron | 35.0% | |
| CAGAAAGAGGAAAAAGAAGA+AGG | - | chr4.3:4393060-4393079 | MS.gene55818:intron | 35.0% | |
| CATACTATCATATAGGGGAA+GGG | + | chr4.3:4395180-4395199 | None:intergenic | 35.0% | |
| CCACCTATAGTATATAACCA+AGG | + | chr4.3:4394648-4394667 | None:intergenic | 35.0% | |
| CCTTGGTTATATACTATAGG+TGG | - | chr4.3:4394645-4394664 | MS.gene55818:intron | 35.0% | |
| CTCTTAAAAGCTAGCTATCA+AGG | - | chr4.3:4394072-4394091 | MS.gene55818:intron | 35.0% | |
| CTTAAAAGCTAGCTATCAAG+GGG | - | chr4.3:4394074-4394093 | MS.gene55818:intron | 35.0% | |
| CTTAAAAGGAAGTTCTCAAC+TGG | + | chr4.3:4395092-4395111 | None:intergenic | 35.0% | |
| GAAACAACAGGTTAAACAAG+AGG | - | chr4.3:4393110-4393129 | MS.gene55818:intron | 35.0% | |
| GAGAACAATAGAGAGAAGAA+AGG | - | chr4.3:4393920-4393939 | MS.gene55818:intron | 35.0% | |
| GATCCTTCAAGAATCAAACA+TGG | - | chr4.3:4392906-4392925 | MS.gene55818:CDS | 35.0% | |
| GTGACAATTCAGGATTTCAA+AGG | - | chr4.3:4393324-4393343 | MS.gene55818:intron | 35.0% | |
| TAGCATTTCTCATGGATGTT+TGG | - | chr4.3:4394705-4394724 | MS.gene55818:intron | 35.0% | |
| TAGCTTAAATTTAACGGCCA+AGG | + | chr4.3:4393521-4393540 | None:intergenic | 35.0% | |
| TCAGCTTGGAAAAAAGAGAA+AGG | - | chr4.3:4393302-4393321 | MS.gene55818:intron | 35.0% | |
| TCATACTATCATATAGGGGA+AGG | + | chr4.3:4395181-4395200 | None:intergenic | 35.0% | |
| TCGGATTAAGGATGTTGATA+GGG | + | chr4.3:4394157-4394176 | None:intergenic | 35.0% | |
| TCTCACTTTAGCATTTCTCA+TGG | - | chr4.3:4394697-4394716 | MS.gene55818:intron | 35.0% | |
| TGGAATGTGACAGTTTACAT+TGG | - | chr4.3:4393951-4393970 | MS.gene55818:intron | 35.0% | |
| TGTTTCTTCGATTCTTCCTT+TGG | + | chr4.3:4392878-4392897 | None:intergenic | 35.0% | |
| TTCAGGAATAAGTTTGACTC+AGG | - | chr4.3:4395614-4395633 | MS.gene55818:CDS | 35.0% | |
| TTCGGATTAAGGATGTTGAT+AGG | + | chr4.3:4394158-4394177 | None:intergenic | 35.0% | |
| TTGCTTTCGAATCTTGGATT+CGG | + | chr4.3:4392941-4392960 | None:intergenic | 35.0% | |
| ! | CAAACCGTGTTCCTTTTTAA+AGG | - | chr4.3:4394187-4394206 | MS.gene55818:intron | 35.0% |
| ! | CTGGCTTATTTCTCACAATA+GGG | - | chr4.3:4394043-4394062 | MS.gene55818:intron | 35.0% |
| ! | TAGGGTTCAAAATAAGTTGG+GGG | - | chr4.3:4394844-4394863 | MS.gene55818:intron | 35.0% |
| ! | TGGCCTTGGTTATATACTAT+AGG | - | chr4.3:4394642-4394661 | MS.gene55818:intron | 35.0% |
| ! | TTCGATTCTTCCTTTGGTTT+CGG | + | chr4.3:4392872-4392891 | None:intergenic | 35.0% |
| !! | AGAGAGTTTTATACCAAGGA+TGG | - | chr4.3:4393366-4393385 | MS.gene55818:intron | 35.0% |
| !! | TGTAGAAGCATTTCGGATTA+AGG | + | chr4.3:4394169-4394188 | None:intergenic | 35.0% |
| !!! | ATGGTTAGTGTTGTTTTAGG+TGG | - | chr4.3:4395306-4395325 | MS.gene55818:intron | 35.0% |
| !!! | TTTGGTTTTGCATTTCAGCT+TGG | - | chr4.3:4393288-4393307 | MS.gene55818:intron | 35.0% |
| AGAGAAGAAAGGGATTTGAG+TGG | - | chr4.3:4393931-4393950 | MS.gene55818:intron | 40.0% | |
| ATTAGCAAAAAGCGAGGCAA+CGG | - | chr4.3:4393541-4393560 | MS.gene55818:intron | 40.0% | |
| CGTCCATGTTTGATTCTTGA+AGG | + | chr4.3:4392912-4392931 | None:intergenic | 40.0% | |
| GAGCTTTCATGATTCGTGTA+AGG | + | chr4.3:4394920-4394939 | None:intergenic | 40.0% | |
| GCCAAATTGATCTGCTTTGT+TGG | - | chr4.3:4395225-4395244 | MS.gene55818:CDS | 40.0% | |
| GCCAACAAAGCAGATCAATT+TGG | + | chr4.3:4395229-4395248 | None:intergenic | 40.0% | |
| GTAGTTATCGTTTCTGTCTG+AGG | - | chr4.3:4394556-4394575 | MS.gene55818:intron | 40.0% | |
| TCCAAACAAACCCTTATCCT+TGG | - | chr4.3:4393501-4393520 | MS.gene55818:intron | 40.0% | |
| ! | ACGTGACTCCTTTTTCTGAA+TGG | + | chr4.3:4395685-4395704 | None:intergenic | 40.0% |
| ! | CGGATTAAGGATGTTGATAG+GGG | + | chr4.3:4394156-4394175 | None:intergenic | 40.0% |
| ! | GCTGGCTTATTTCTCACAAT+AGG | - | chr4.3:4394042-4394061 | MS.gene55818:intron | 40.0% |
| ! | GTCAGGCACAATTTTCTTGA+AGG | + | chr4.3:4395652-4395671 | None:intergenic | 40.0% |
| !! | CACGGTTTGTAGAAGCATTT+CGG | + | chr4.3:4394176-4394195 | None:intergenic | 40.0% |
| !! | GATTTTCAGGAGACATCTGA+TGG | - | chr4.3:4393823-4393842 | MS.gene55818:intron | 40.0% |
| !! | TGAATGGCTTGTTCTATGTC+AGG | + | chr4.3:4395669-4395688 | None:intergenic | 40.0% |
| !! | TTCGATGATTTGCTTGACGA+AGG | + | chr4.3:4393010-4393029 | None:intergenic | 40.0% |
| AGGAAGTTCTTTGCCATCCT+TGG | + | chr4.3:4393382-4393401 | None:intergenic | 45.0% | |
| AGGAGACATCTGATGGAAAC+TGG | - | chr4.3:4393830-4393849 | MS.gene55818:intron | 45.0% | |
| AGGGAATCTATGCAATTGGC+AGG | + | chr4.3:4393981-4394000 | None:intergenic | 45.0% | |
| ATACAACCAACTCCGTGTAG+TGG | - | chr4.3:4395507-4395526 | MS.gene55818:CDS | 45.0% | |
| CATGGGAAAAGGGTTATTCC+TGG | - | chr4.3:4393252-4393271 | MS.gene55818:intron | 45.0% | |
| CTATGCTTTCTCCCACTACA+CGG | + | chr4.3:4395522-4395541 | None:intergenic | 45.0% | |
| GCAGCAAGAACAACAGAAAG+AGG | - | chr4.3:4393047-4393066 | MS.gene55818:intron | 45.0% | |
| GCTATCAAGGGGTAAGAAAC+AGG | - | chr4.3:4394085-4394104 | MS.gene55818:intron | 45.0% | |
| GCTCAAGAGTCATGAGAAGA+AGG | - | chr4.3:4394292-4394311 | MS.gene55818:intron | 45.0% | |
| GGGAATCTATGCAATTGGCA+GGG | + | chr4.3:4393980-4393999 | None:intergenic | 45.0% | |
| TAAGTTTGACTCAGGAGCAG+TGG | - | chr4.3:4395622-4395641 | MS.gene55818:CDS | 45.0% | |
| TACAACCAACTCCGTGTAGT+GGG | - | chr4.3:4395508-4395527 | MS.gene55818:CDS | 45.0% | |
| ! | GCCAAGGATAAGGGTTTGTT+TGG | + | chr4.3:4393505-4393524 | None:intergenic | 45.0% |
| ! | TGAGGCTTGCTTTCGAATCT+TGG | + | chr4.3:4392947-4392966 | None:intergenic | 45.0% |
| ! | TTAAGGATGTTGATAGGGGC+CGG | + | chr4.3:4394152-4394171 | None:intergenic | 45.0% |
| ! | TTGCTTGACGAAGGCTTTGA+AGG | + | chr4.3:4393001-4393020 | None:intergenic | 45.0% |
| !! | TGCTTGACGAAGGCTTTGAA+GGG | + | chr4.3:4393000-4393019 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTCAT+TGG | - | chr4.3:4394977-4394996 | MS.gene55818:intron | 5.0% |
| AGATGTCTCGGCGTTGCAAT+TGG | - | chr4.3:4395051-4395070 | MS.gene55818:intron | 50.0% | |
| ATGGATGACGCCGAAACCAA+AGG | - | chr4.3:4392859-4392878 | MS.gene55818:CDS | 50.0% | |
| CTCGCAGATGACTAGATCAC+CGG | + | chr4.3:4393169-4393188 | None:intergenic | 50.0% | |
| GGCACAACTATGACACAAGC+TGG | - | chr4.3:4394024-4394043 | MS.gene55818:intron | 50.0% | |
| GGTATCCACCTAACTCCAAC+CGG | + | chr4.3:4395381-4395400 | None:intergenic | 50.0% | |
| TAGGTGGTCTGTGCATACAG+CGG | - | chr4.3:4395322-4395341 | MS.gene55818:intron | 50.0% | |
| TTGATAGGGGCCGGTATTGT+GGG | + | chr4.3:4394143-4394162 | None:intergenic | 50.0% | |
| TTTCTCCCACTACACGGAGT+TGG | + | chr4.3:4395516-4395535 | None:intergenic | 50.0% | |
| ! | CTTTGAAGGGAGGCTGAGAT+AGG | + | chr4.3:4392987-4393006 | None:intergenic | 50.0% |
| ! | TTAGTCCACCGGTTGGAGTT+AGG | - | chr4.3:4395370-4395389 | MS.gene55818:intron | 50.0% |
| !! | TTGACGAAGGCTTTGAAGGG+AGG | + | chr4.3:4392997-4393016 | None:intergenic | 50.0% |
| ATCCACCTAACTCCAACCGG+TGG | + | chr4.3:4395378-4395397 | None:intergenic | 55.0% | |
| CGGTGATCTAGTCATCTGCG+AGG | - | chr4.3:4393167-4393186 | MS.gene55818:intron | 55.0% | |
| CTCTTTCGCACGCACTTCAC+CGG | - | chr4.3:4393211-4393230 | MS.gene55818:intron | 55.0% | |
| GGGACTTGACCCCACAATAC+CGG | - | chr4.3:4394130-4394149 | MS.gene55818:intron | 55.0% | |
| TGATAGGGGCCGGTATTGTG+GGG | + | chr4.3:4394142-4394161 | None:intergenic | 55.0% | |
| ! | GTTGATAGGGGCCGGTATTG+TGG | + | chr4.3:4394144-4394163 | None:intergenic | 55.0% |
| ! | GTCCACCGGTTGGAGTTAGG+TGG | - | chr4.3:4395373-4395392 | MS.gene55818:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4392859 | 4395710 | 4392859 | ID=MS.gene55818 |
| chr4.3 | mRNA | 4392859 | 4395710 | 4392859 | ID=MS.gene55818.t1;Parent=MS.gene55818 |
| chr4.3 | exon | 4395381 | 4395710 | 4395381 | ID=MS.gene55818.t1.exon1;Parent=MS.gene55818.t1 |
| chr4.3 | CDS | 4395381 | 4395710 | 4395381 | ID=cds.MS.gene55818.t1;Parent=MS.gene55818.t1 |
| chr4.3 | exon | 4395158 | 4395263 | 4395158 | ID=MS.gene55818.t1.exon2;Parent=MS.gene55818.t1 |
| chr4.3 | CDS | 4395158 | 4395263 | 4395158 | ID=cds.MS.gene55818.t1;Parent=MS.gene55818.t1 |
| chr4.3 | exon | 4392859 | 4392950 | 4392859 | ID=MS.gene55818.t1.exon3;Parent=MS.gene55818.t1 |
| chr4.3 | CDS | 4392859 | 4392950 | 4392859 | ID=cds.MS.gene55818.t1;Parent=MS.gene55818.t1 |
| Gene Sequence |
| Protein sequence |
