AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052441

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052441.t1 MTR_6g086340 97.895 475 10 0 4 478 26 500 0.0 961
MS.gene052441.t1 MTR_6g086300 81.474 475 88 0 4 478 28 502 0.0 797
MS.gene052441.t1 MTR_6g086300 81.474 475 88 0 4 478 28 502 0.0 797
MS.gene052441.t1 MTR_8g083530 76.632 475 111 0 4 478 29 503 0.0 770
MS.gene052441.t1 MTR_8g083520 74.526 475 88 1 4 478 20 461 0.0 741
MS.gene052441.t1 MTR_8g083520 74.879 414 71 1 65 478 1 381 0.0 650
MS.gene052441.t1 MTR_4g107040 55.579 475 211 0 4 478 70 544 0.0 564
MS.gene052441.t1 MTR_3g078170 55.789 475 210 0 4 478 68 542 0.0 559
MS.gene052441.t1 MTR_8g064170 56.000 475 209 0 4 478 67 541 0.0 558
MS.gene052441.t1 MTR_8g064170 52.000 475 196 1 4 478 67 509 5.24e-178 509
MS.gene052441.t1 MTR_8g083530 74.214 318 82 0 4 321 29 346 5.26e-176 498
MS.gene052441.t1 MTR_3g078170 54.499 389 177 0 4 392 68 456 1.01e-152 442
MS.gene052441.t1 MTR_3g078170 54.270 363 166 0 4 366 68 430 2.23e-140 410
MS.gene052441.t1 MTR_3g078170 54.270 363 166 0 4 366 68 430 4.06e-140 410
MS.gene052441.t1 MTR_3g078550 41.983 474 264 5 13 477 23 494 1.91e-118 357
MS.gene052441.t1 MTR_3g078550 42.576 458 252 5 29 477 9 464 1.28e-115 348
MS.gene052441.t1 MTR_3g078490 40.928 474 269 5 13 477 53 524 2.15e-115 350
MS.gene052441.t1 MTR_4g106510 42.259 478 257 7 13 477 23 494 1.96e-114 346
MS.gene052441.t1 MTR_2g067660 36.245 458 287 4 12 468 61 514 2.04e-98 306
MS.gene052441.t1 MTR_1690s0010 40.882 340 194 5 4 340 15 350 2.51e-73 235
MS.gene052441.t1 MTR_3g078490 39.875 321 184 4 13 326 23 341 1.14e-64 213
MS.gene052441.t1 MTR_2g009750 31.933 476 304 11 4 468 21 487 3.69e-57 197
MS.gene052441.t1 MTR_4g093170 31.933 476 304 11 4 468 48 514 3.73e-57 198
MS.gene052441.t1 MTR_2g009750 31.789 475 305 11 4 468 20 485 1.04e-56 196
MS.gene052441.t1 MTR_2g009750 31.789 475 305 11 4 468 21 486 1.28e-56 196
MS.gene052441.t1 MTR_2g034160 28.481 474 317 10 10 468 61 527 3.34e-56 197
MS.gene052441.t1 MTR_1g014320 28.842 475 314 10 12 473 30 493 8.19e-54 188
MS.gene052441.t1 MTR_4g131180 29.325 474 312 10 12 476 30 489 1.15e-52 185
MS.gene052441.t1 MTR_2g042330 27.629 485 333 12 2 475 21 498 1.57e-51 182
MS.gene052441.t1 MTR_4g131180 29.439 428 283 8 12 431 30 446 4.26e-50 178
MS.gene052441.t1 MTR_1399s0020 27.763 371 216 4 98 466 15 335 8.91e-35 133
MS.gene052441.t1 MTR_8g076480 30.117 342 225 10 132 468 106 438 6.41e-30 122
MS.gene052441.t1 MTR_2g097950 27.252 433 260 15 70 473 51 457 3.74e-27 114
MS.gene052441.t1 MTR_8g094600 27.666 347 237 8 134 475 168 505 4.53e-27 114
MS.gene052441.t1 MTR_1g029840 27.649 387 256 13 88 468 77 445 1.29e-26 112
MS.gene052441.t1 MTR_1222s0010 31.250 320 189 15 134 439 105 407 1.93e-26 113
MS.gene052441.t1 MTR_1g029840 27.649 387 256 13 88 468 77 445 2.37e-26 112
MS.gene052441.t1 MTR_1314s0010 27.954 347 228 9 135 469 1 337 8.27e-25 105
MS.gene052441.t1 MTR_3g088150 26.923 338 237 8 134 468 117 447 3.56e-24 105
MS.gene052441.t1 MTR_2g097950 26.636 428 234 15 70 473 51 422 2.10e-23 103
MS.gene052441.t1 MTR_4g065040 27.687 307 201 9 134 431 104 398 6.62e-19 89.7
MS.gene052441.t1 MTR_0002s0820 44.211 95 45 2 197 283 58 152 5.09e-14 70.1
MS.gene052441.t1 MTR_1g071870 70.732 41 12 0 420 460 227 267 3.13e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052441.t1 AT3G24503 69.538 476 144 1 4 478 26 501 0.0 705
MS.gene052441.t1 AT3G48000 55.368 475 212 0 4 478 64 538 0.0 562
MS.gene052441.t1 AT1G23800 55.368 475 212 0 4 478 60 534 0.0 553
MS.gene052441.t1 AT3G48170 43.737 487 255 8 4 477 14 494 3.82e-134 397
MS.gene052441.t1 AT1G74920 43.396 477 253 6 13 477 23 494 1.28e-129 385
MS.gene052441.t1 AT1G74920 43.187 477 249 7 13 477 23 489 1.58e-127 380
MS.gene052441.t1 AT1G23800 54.012 324 149 0 4 327 60 383 5.44e-120 357
MS.gene052441.t1 AT1G79440 37.418 457 281 4 13 468 68 520 2.10e-96 301
MS.gene052441.t1 AT2G14170 33.193 476 298 11 4 468 11 477 1.67e-63 214
MS.gene052441.t1 AT2G14170 33.193 476 298 11 4 468 120 586 3.23e-62 213
MS.gene052441.t1 AT2G14170 33.945 436 271 9 4 431 120 546 1.27e-61 211
MS.gene052441.t1 AT2G24270 30.579 484 296 13 12 474 30 494 3.35e-55 192
MS.gene052441.t1 AT2G24270 30.579 484 296 13 12 474 30 494 3.35e-55 192
MS.gene052441.t1 AT2G24270 30.579 484 296 13 12 474 30 494 5.01e-55 192
MS.gene052441.t1 AT2G24270 30.579 484 296 13 12 474 70 534 1.09e-54 191
MS.gene052441.t1 AT1G54100 28.513 491 321 14 2 475 20 497 1.47e-53 188
MS.gene052441.t1 AT1G54100 28.513 491 321 14 2 475 20 497 1.47e-53 188
MS.gene052441.t1 AT3G66658 28.814 472 312 11 13 468 64 527 2.51e-53 188
MS.gene052441.t1 AT3G66658 28.632 475 315 11 10 468 61 527 5.71e-53 188
MS.gene052441.t1 AT1G44170 30.303 330 210 11 134 455 48 365 2.09e-29 120
MS.gene052441.t1 AT1G44170 29.738 343 221 11 134 468 111 441 2.85e-29 120
MS.gene052441.t1 AT1G44170 29.738 343 221 11 134 468 111 441 2.85e-29 120
MS.gene052441.t1 AT4G36250 25.850 441 296 15 31 455 2 427 2.00e-23 103
MS.gene052441.t1 AT4G34240 28.916 332 212 11 134 455 32 349 2.68e-23 102
MS.gene052441.t1 AT4G34240 28.916 332 212 11 134 455 174 491 8.24e-23 102
MS.gene052441.t1 AT4G34240 28.916 332 212 11 134 455 159 476 1.14e-22 101
MS.gene052441.t1 AT4G34240 36.424 151 85 6 134 280 174 317 5.00e-11 64.7

Find 104 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTAGCTTCTGCTATTT+TGG 0.126135 6.1:-75162648 None:intergenic
CCTCTTGGTTCTGCTCAATT+AGG 0.146809 6.1:-75163983 None:intergenic
GTAATCACTTCTTCTGTTCT+TGG 0.154923 6.1:-75162626 None:intergenic
TTTGATATTGATTGCCCTTT+TGG 0.202054 6.1:+75166407 MS.gene052441:CDS
GCTGTTGATCTTGCACTATT+TGG 0.206043 6.1:+75165128 MS.gene052441:CDS
CCCTGCTGCTAGGCCATATT+TGG 0.222361 6.1:-75166300 None:intergenic
TGGGGTCCTTGTTGAACTTT+AGG 0.227903 6.1:-75165366 None:intergenic
CTCTTGGTTCTGCTCAATTA+GGG 0.242841 6.1:-75163982 None:intergenic
AGGGATTGTGACAAAGAATT+TGG 0.263862 6.1:+75166319 MS.gene052441:CDS
ATAGCACAAGATGAAATATT+TGG 0.265938 6.1:+75165832 MS.gene052441:CDS
AAGCCTGTATCACTTGAATT+AGG 0.271049 6.1:+75165059 MS.gene052441:CDS
ATTCATCGTAAATCCCTTCT+TGG 0.275084 6.1:-75165287 None:intergenic
TGAAATATTTGGACCTGTTA+TGG 0.283168 6.1:+75165843 MS.gene052441:CDS
AGTGGATATGGAAGAGATTA+TGG 0.289197 6.1:+75166443 MS.gene052441:CDS
AGCAATATCAACATCTTCTT+TGG 0.291243 6.1:-75162666 None:intergenic
ATAGGAGAGAGCAAAGATTA+TGG 0.291747 6.1:+75163947 MS.gene052441:intron
CACTTCTCCATGAACTTTAT+CGG 0.292029 6.1:-75164111 None:intergenic
TGATATACTTATATGCATAT+TGG 0.297647 6.1:+75162557 None:intergenic
ATTCTTTCCATGTTTAATAT+AGG 0.304720 6.1:-75165615 None:intergenic
GAGAAGTGTTCAAAACTTCT+AGG 0.308999 6.1:+75164126 MS.gene052441:CDS
TGCTAAGGCTGCTCCTTGTT+TGG 0.309023 6.1:+75164232 MS.gene052441:CDS
TTTGGCTGCTGGTTGTACTA+TGG 0.321522 6.1:+75164250 MS.gene052441:CDS
GGGTATAAGATGAGTGGATA+TGG 0.326692 6.1:+75166431 MS.gene052441:CDS
AAGGCCAACAATACCAAATA+TGG 0.331879 6.1:+75166287 MS.gene052441:CDS
GAAGGAGCCACATTATTAAC+TGG 0.343248 6.1:+75165638 MS.gene052441:CDS
CTCAATGTACTGCCAGGATT+TGG 0.358680 6.1:+75164818 MS.gene052441:CDS
TAGGCCATATTTGGTATTGT+TGG 0.360370 6.1:-75166291 None:intergenic
AACTGTTATGTTCTTTGCTA+AGG 0.366049 6.1:+75164217 MS.gene052441:CDS
GAGCAAAGATTATGGTGAAA+TGG 0.367613 6.1:+75163955 MS.gene052441:CDS
CTTCTTAATTCCTTCCTCAA+TGG 0.367868 6.1:-75166267 None:intergenic
TCTTCATATGTATACTTTGA+TGG 0.368985 6.1:+75164151 MS.gene052441:CDS
CGTAGGATATTGGCTGCTTC+AGG 0.370217 6.1:-75164071 None:intergenic
CAATTCGTGCAGGTATCATT+TGG 0.382886 6.1:+75166366 MS.gene052441:CDS
TTTACAGGTTCAACTGAAAC+AGG 0.388979 6.1:+75164999 MS.gene052441:CDS
CCTCCTAATTCAAGTGATAC+AGG 0.389241 6.1:-75165062 None:intergenic
CCAGGATTTGGTTCAACTGC+TGG 0.389889 6.1:+75164830 MS.gene052441:CDS
GAGAGAGGTGTTTGCTCAGC+AGG 0.397287 6.1:-75164281 None:intergenic
GCTGCTCCTTGTTTGGCTGC+TGG 0.401272 6.1:+75164239 MS.gene052441:CDS
CCAATGCTGCTATTTCCTCT+TGG 0.405103 6.1:-75163998 None:intergenic
GGCATAGTAACGTAGGATAT+TGG 0.407458 6.1:-75164081 None:intergenic
AGCCATGGAGAATTGTAAAT+AGG 0.411898 6.1:-75166512 None:intergenic
ACCAAATATGGCCTAGCAGC+AGG 0.412685 6.1:+75166299 MS.gene052441:CDS
TGTTGAACTTTAGGATCAAA+AGG 0.414657 6.1:-75165357 None:intergenic
GCAAGAGAAGCATTTGATAA+TGG 0.419949 6.1:+75162698 MS.gene052441:CDS
ATGGAACCTATTGGTGTTGT+TGG 0.420890 6.1:+75164170 MS.gene052441:CDS
AGCAAAGATTATGGTGAAAT+GGG 0.429763 6.1:+75163956 MS.gene052441:CDS
AACTTAGAAAGTGCCATAAC+AGG 0.431254 6.1:-75165856 None:intergenic
ATGTGTCCAACAACACCAAT+AGG 0.433262 6.1:-75164176 None:intergenic
CTCATCTTATACCCTCCAAA+AGG 0.454556 6.1:-75166422 None:intergenic
CCAAGAGGAAATAGCAGCAT+TGG 0.454749 6.1:+75163998 MS.gene052441:CDS
CCAGCAGTTGAACCAAATCC+TGG 0.484916 6.1:-75164830 None:intergenic
GCATCATCGAAAATTAAAAC+AGG 0.485279 6.1:-75165092 None:intergenic
TGAGAAGAAAGTGCTTGAAA+AGG 0.490397 6.1:+75165311 MS.gene052441:CDS
TATACTTTGATGGAACCTAT+TGG 0.491084 6.1:+75164161 MS.gene052441:CDS
AGCTGCAATAACCTCACATA+TGG 0.491405 6.1:+75164853 MS.gene052441:CDS
AATTATATACCTTGTTGTGA+AGG 0.491939 6.1:-75165154 None:intergenic
GGTGCAGCCGATAAAGTTCA+TGG 0.492690 6.1:+75164104 MS.gene052441:CDS
GCAGCATTGGATACAATTGA+TGG 0.494635 6.1:+75164011 MS.gene052441:CDS
TTGTCACAATCCCTGCTGCT+AGG 0.495961 6.1:-75166310 None:intergenic
AGTACATTGAGCACTCCATC+TGG 0.505876 6.1:-75164806 None:intergenic
ATTAAACATGGAAAGAATGA+AGG 0.512041 6.1:+75165620 MS.gene052441:CDS
GTTGAACTTTAGGATCAAAA+GGG 0.516357 6.1:-75165356 None:intergenic
AACAGGCCGTCGAGTAATGC+AGG 0.517213 6.1:+75165016 MS.gene052441:CDS
GGTCCATGGCCACGTATGCC+TGG 0.518148 6.1:+75162719 MS.gene052441:CDS
ATCTAGGCTGGTATTCCAGA+TGG 0.526428 6.1:+75164791 MS.gene052441:intron
CTCCTATTTACAATTCTCCA+TGG 0.530023 6.1:+75166510 MS.gene052441:CDS
TAGCAAAGAACATAACAGTT+GGG 0.536617 6.1:-75164214 None:intergenic
ATTCTTTCCTATATTAAACA+TGG 0.538136 6.1:+75165608 MS.gene052441:CDS
ATATGGAAGAGATTATGGAT+TGG 0.550655 6.1:+75166448 MS.gene052441:CDS
GCACCAGGCATACGTGGCCA+TGG 0.554932 6.1:-75162722 None:intergenic
GGAGTGCTCAATGTACTGCC+AGG 0.556694 6.1:+75164812 MS.gene052441:CDS
AATATCCTACGTTACTATGC+CGG 0.563081 6.1:+75164083 MS.gene052441:CDS
AAAAGGGCAATCAATATCAA+AGG 0.565522 6.1:-75166405 None:intergenic
TTGTTGGACACATTATACCT+TGG 0.569907 6.1:+75164186 MS.gene052441:CDS
TAAATATTGAAGGACCATTG+AGG 0.573357 6.1:+75166253 MS.gene052441:intron
ATGAACTTTATCGGCTGCAC+CGG 0.573497 6.1:-75164102 None:intergenic
GGTAAGCAAGTGGGAAACAA+AGG 0.576032 6.1:+75165662 MS.gene052441:CDS
TTAGCAAAGAACATAACAGT+TGG 0.580072 6.1:-75164215 None:intergenic
GTGTCAAGGTCAATTCGTGC+AGG 0.581181 6.1:+75166356 MS.gene052441:CDS
AGATTTGAACTTACAGCACC+AGG 0.585736 6.1:-75162737 None:intergenic
TTTGGAGGGTATAAGATGAG+TGG 0.586902 6.1:+75166425 MS.gene052441:CDS
TCATCTTATACCCTCCAAAA+GGG 0.587155 6.1:-75166421 None:intergenic
AAGGAGCCACATTATTAACT+GGG 0.587465 6.1:+75165639 MS.gene052441:CDS
ATAACAGTTGGGAAATTCCA+AGG 0.594259 6.1:-75164203 None:intergenic
CCAAATATGGCCTAGCAGCA+GGG 0.595334 6.1:+75166300 MS.gene052441:CDS
ATGGAGGGAAACTATACAGT+TGG 0.597500 6.1:+75164030 MS.gene052441:CDS
GTAGAAATATACCGTAACAT+TGG 0.602026 6.1:-75165711 None:intergenic
CCTGTATCACTTGAATTAGG+AGG 0.611734 6.1:+75165062 MS.gene052441:CDS
ATTTGGAATCCTTCACAACA+AGG 0.615408 6.1:+75165145 MS.gene052441:CDS
TATTGAAGGACCATTGAGGA+AGG 0.617304 6.1:+75166257 MS.gene052441:intron
CATTGAGGAAGGAATTAAGA+AGG 0.621050 6.1:+75166268 MS.gene052441:CDS
TGCATCAATGTCCATATGTG+AGG 0.622090 6.1:-75164864 None:intergenic
AAGCATTTGATAATGGTCCA+TGG 0.623184 6.1:+75162705 MS.gene052441:CDS
CTTACAGCACCAGGCATACG+TGG 0.623863 6.1:-75162728 None:intergenic
CTGCAGCCTGCATTACTCGA+CGG 0.627078 6.1:-75165022 None:intergenic
GCATTGGATACAATTGATGG+AGG 0.635584 6.1:+75164014 MS.gene052441:CDS
GTACAACCAGCAGCCAAACA+AGG 0.643727 6.1:-75164245 None:intergenic
ATATTGCAAATACTGTGTCA+AGG 0.662860 6.1:+75166342 MS.gene052441:CDS
CATTGGATACAATTGATGGA+GGG 0.663451 6.1:+75164015 MS.gene052441:CDS
TTTGATCCTAAAGTTCAACA+AGG 0.667873 6.1:+75165360 MS.gene052441:CDS
CCTAATTGAGCAGAACCAAG+AGG 0.679930 6.1:+75163983 MS.gene052441:CDS
CTGCACCGGCATAGTAACGT+AGG 0.699221 6.1:-75164088 None:intergenic
AGGAGCCACATTATTAACTG+GGG 0.700677 6.1:+75165640 MS.gene052441:CDS
GGAGCCACATTATTAACTGG+GGG 0.710041 6.1:+75165641 MS.gene052441:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATATTATAGAAAATTG+CGG + chr6.1:75165956-75165975 MS.gene052441:intron 10.0%
!! TTATTTATAAATGTAATCAA+AGG - chr6.1:75163057-75163076 None:intergenic 10.0%
!!! TTTTTTGTTGAAATAAAAAA+AGG + chr6.1:75162581-75162600 MS.gene052441:CDS 10.0%
!! AAAAGTTTAAAAGTAGAAAT+AGG - chr6.1:75164704-75164723 None:intergenic 15.0%
!! AATGTTGAATTAAATATTGA+AGG + chr6.1:75166243-75166262 MS.gene052441:intron 15.0%
!! ATATTTCATAAATTATTGCA+AGG + chr6.1:75163461-75163480 MS.gene052441:intron 15.0%
!! ATTTGAACAATAAATTTGAA+TGG - chr6.1:75163004-75163023 None:intergenic 15.0%
!! CAATATTTAATTCAACATTT+AGG - chr6.1:75166242-75166261 None:intergenic 15.0%
!!! AATTTTTTGAAAATTTGTGT+AGG + chr6.1:75165798-75165817 MS.gene052441:intron 15.0%
!!! ATCTTTTAAAACTAAGTTTA+GGG - chr6.1:75166204-75166223 None:intergenic 15.0%
!!! ATTTTCTTAAATTGAACATA+TGG - chr6.1:75164676-75164695 None:intergenic 15.0%
!!! TATCTTTTAAAACTAAGTTT+AGG - chr6.1:75166205-75166224 None:intergenic 15.0%
!! AGAAAGACAAAAAATATGTA+AGG + chr6.1:75163624-75163643 MS.gene052441:intron 20.0%
!! ATTCTTTCCATGTTTAATAT+AGG - chr6.1:75165618-75165637 None:intergenic 20.0%
!! ATTCTTTCCTATATTAAACA+TGG + chr6.1:75165608-75165627 MS.gene052441:CDS 20.0%
!! ATTTGACATCATATTAAGAT+TGG - chr6.1:75164547-75164566 None:intergenic 20.0%
!! TAAGGAATGTATAAAATAAG+TGG + chr6.1:75163642-75163661 MS.gene052441:intron 20.0%
!! TATTAAATAACTGATGTATC+TGG + chr6.1:75163095-75163114 MS.gene052441:intron 20.0%
!! TTAAAGAAAATTTATCGAGT+TGG + chr6.1:75164341-75164360 MS.gene052441:intron 20.0%
!! TTCACAAAATAATTTCATGT+GGG + chr6.1:75163237-75163256 MS.gene052441:intron 20.0%
!! TTGTAAAATTGTCATTGTTA+AGG - chr6.1:75163324-75163343 None:intergenic 20.0%
!! TTTCACAAAATAATTTCATG+TGG + chr6.1:75163236-75163255 MS.gene052441:intron 20.0%
!!! ACATATTTTCATACATGTAT+TGG - chr6.1:75164651-75164670 None:intergenic 20.0%
!!! GAATTGATTTTTGACATTTT+TGG + chr6.1:75162900-75162919 MS.gene052441:intron 20.0%
!!! GAATTTTAAAATCCGAAAAA+TGG + chr6.1:75163723-75163742 MS.gene052441:intron 20.0%
!!! GGATTTTAAAATTCGAAATA+GGG - chr6.1:75163717-75163736 None:intergenic 20.0%
!!! TAATACTTTTTTTCCAACAT+TGG + chr6.1:75162794-75162813 MS.gene052441:intron 20.0%
!!! TACTATTTTTACCAATGTTA+CGG + chr6.1:75165700-75165719 MS.gene052441:CDS 20.0%
!!! TGTTACACAAACTTTAAAAT+AGG - chr6.1:75162766-75162785 None:intergenic 20.0%
! AAAATTGTCATTGTTAAGGT+TGG - chr6.1:75163320-75163339 None:intergenic 25.0%
! ATAGCACAAGATGAAATATT+TGG + chr6.1:75165832-75165851 MS.gene052441:CDS 25.0%
! ATATAATCCGAAATGTTGTA+AGG + chr6.1:75163790-75163809 MS.gene052441:intron 25.0%
! ATTAAACATGGAAAGAATGA+AGG + chr6.1:75165620-75165639 MS.gene052441:CDS 25.0%
! CATTACATTTCACAAAAACT+AGG + chr6.1:75164936-75164955 MS.gene052441:intron 25.0%
! GAAATTCAAATCAAGCAATT+TGG + chr6.1:75164442-75164461 MS.gene052441:intron 25.0%
! GCTTTATAATTAGAATCAGA+AGG + chr6.1:75165514-75165533 MS.gene052441:intron 25.0%
! GTAACATTGGTAAAAATAGT+AGG - chr6.1:75165701-75165720 None:intergenic 25.0%
! GTTTAAAAAAAGTTTGTGAC+CGG - chr6.1:75166182-75166201 None:intergenic 25.0%
! TAAGAGATTGAGTTTATGTT+AGG + chr6.1:75163271-75163290 MS.gene052441:intron 25.0%
! TCTTCATATGTATACTTTGA+TGG + chr6.1:75164151-75164170 MS.gene052441:CDS 25.0%
! TGAGTTTATGTTAGGAATTA+CGG + chr6.1:75163279-75163298 MS.gene052441:intron 25.0%
! TGTGTAACACATTTACAATA+AGG - chr6.1:75165431-75165450 None:intergenic 25.0%
!! AACAAAAAATTTTTACGCCA+TGG + chr6.1:75164898-75164917 MS.gene052441:intron 25.0%
!! AATTATATACCTTGTTGTGA+AGG - chr6.1:75165157-75165176 None:intergenic 25.0%
!! AATTGCTTGATTTGAATTTC+CGG - chr6.1:75164442-75164461 None:intergenic 25.0%
!! ACATATGGTTTCAATTTTCT+TGG - chr6.1:75165741-75165760 None:intergenic 25.0%
!! AGTAACTCTTTGTAATTTTC+AGG + chr6.1:75165230-75165249 MS.gene052441:intron 25.0%
!! ATTTAAAACCATGTCTAAGA+TGG - chr6.1:75165912-75165931 None:intergenic 25.0%
!! CAACATGCATTAATTTGATA+TGG + chr6.1:75163910-75163929 MS.gene052441:intron 25.0%
!! GGTATATAATTTTACCTTCA+AGG + chr6.1:75165166-75165185 MS.gene052441:intron 25.0%
!! GTAACTCTTTGTAATTTTCA+GGG + chr6.1:75165231-75165250 MS.gene052441:intron 25.0%
!! TTTTCATATGCACTCTTAAA+GGG - chr6.1:75163582-75163601 None:intergenic 25.0%
!!! ATCATTGATTTGAGATTAGA+TGG - chr6.1:75165468-75165487 None:intergenic 25.0%
!!! CGGATTTTAAAATTCGAAAT+AGG - chr6.1:75163718-75163737 None:intergenic 25.0%
!!! TGGCGTAAAAATTTTTTGTT+AGG - chr6.1:75164898-75164917 None:intergenic 25.0%
!!! TTGACATTTTTGGTTGTTAT+CGG + chr6.1:75162910-75162929 MS.gene052441:intron 25.0%
AAAAATGGAGAGTTTATGGA+GGG + chr6.1:75163738-75163757 MS.gene052441:intron 30.0%
AAAAGGGCAATCAATATCAA+AGG - chr6.1:75166408-75166427 None:intergenic 30.0%
AACTCAATCTCTTATAGAAG+TGG - chr6.1:75163265-75163284 None:intergenic 30.0%
AACTGTTATGTTCTTTGCTA+AGG + chr6.1:75164217-75164236 MS.gene052441:CDS 30.0%
AAGGTGATCACAATAAAAGA+GGG + chr6.1:75163540-75163559 MS.gene052441:intron 30.0%
ACATTAGATACCAAGGATTA+GGG - chr6.1:75164603-75164622 None:intergenic 30.0%
ACTCAATCTCTTATAGAAGT+GGG - chr6.1:75163264-75163283 None:intergenic 30.0%
AGACAAGCCTTCAATATAAA+GGG + chr6.1:75166123-75166142 MS.gene052441:intron 30.0%
AGATCAAATCTACTCGAAAA+CGG - chr6.1:75163347-75163366 None:intergenic 30.0%
AGCAAAGATTATGGTGAAAT+GGG + chr6.1:75163956-75163975 MS.gene052441:CDS 30.0%
AGCAATATCAACATCTTCTT+TGG - chr6.1:75162669-75162688 None:intergenic 30.0%
AGCGTAAAAAAACGAATTTG+TGG + chr6.1:75163378-75163397 MS.gene052441:intron 30.0%
ATATGGAAGAGATTATGGAT+TGG + chr6.1:75166448-75166467 MS.gene052441:CDS 30.0%
ATATTGCAAATACTGTGTCA+AGG + chr6.1:75166342-75166361 MS.gene052441:CDS 30.0%
ATGCCTTCAATATAAAGTGT+CGG - chr6.1:75166025-75166044 None:intergenic 30.0%
CATAAACACATTAGATACCA+AGG - chr6.1:75164610-75164629 None:intergenic 30.0%
CATATTAGTATCCTTACTTG+GGG - chr6.1:75165387-75165406 None:intergenic 30.0%
GCATATTAGTATCCTTACTT+GGG - chr6.1:75165388-75165407 None:intergenic 30.0%
GCATCATCGAAAATTAAAAC+AGG - chr6.1:75165095-75165114 None:intergenic 30.0%
GTAGAAATATACCGTAACAT+TGG - chr6.1:75165714-75165733 None:intergenic 30.0%
TAAATATTGAAGGACCATTG+AGG + chr6.1:75166253-75166272 MS.gene052441:intron 30.0%
TACAATATTGTGTGTGTTGT+CGG - chr6.1:75166057-75166076 None:intergenic 30.0%
TAGCAAAGAACATAACAGTT+GGG - chr6.1:75164217-75164236 None:intergenic 30.0%
TATACTTTGATGGAACCTAT+TGG + chr6.1:75164161-75164180 MS.gene052441:CDS 30.0%
TATATGAGTAGTCATCTAGT+TGG + chr6.1:75163508-75163527 MS.gene052441:intron 30.0%
TCAGTTATGAGAATGACATA+TGG - chr6.1:75165756-75165775 None:intergenic 30.0%
TGAAATATTTGGACCTGTTA+TGG + chr6.1:75165843-75165862 MS.gene052441:CDS 30.0%
TGCATATTAGTATCCTTACT+TGG - chr6.1:75165389-75165408 None:intergenic 30.0%
TGCTTATAAATGTCACAAGA+GGG + chr6.1:75163172-75163191 MS.gene052441:intron 30.0%
TTAGCAAAGAACATAACAGT+TGG - chr6.1:75164218-75164237 None:intergenic 30.0%
TTCGGATTATATAACTCGAA+AGG - chr6.1:75163782-75163801 None:intergenic 30.0%
TTGCTTATAAATGTCACAAG+AGG + chr6.1:75163171-75163190 MS.gene052441:intron 30.0%
TTTGATCCTAAAGTTCAACA+AGG + chr6.1:75165360-75165379 MS.gene052441:CDS 30.0%
! AACGAATTTGTGGATTTTCT+TGG + chr6.1:75163388-75163407 MS.gene052441:intron 30.0%
! ATTTTCTTTGCAGACTAGTA+AGG + chr6.1:75165571-75165590 MS.gene052441:intron 30.0%
! CTTTTCATATGCACTCTTAA+AGG - chr6.1:75163583-75163602 None:intergenic 30.0%
! TGACAACTACTAATTTTTGC+TGG + chr6.1:75164962-75164981 MS.gene052441:intron 30.0%
! TGCATCTTTAACTTAATCCA+TGG - chr6.1:75164918-75164937 None:intergenic 30.0%
! TGTTACAAGATTTTCCTTGA+AGG - chr6.1:75165183-75165202 None:intergenic 30.0%
! TTGAATCCGATTTTCAAAGT+CGG + chr6.1:75164509-75164528 MS.gene052441:intron 30.0%
! TTTCTTTCTCCTTTTCATCT+AGG + chr6.1:75164775-75164794 MS.gene052441:intron 30.0%
!! GTTGAACTTTAGGATCAAAA+GGG - chr6.1:75165359-75165378 None:intergenic 30.0%
!! TCCATAAACTCTCCATTTTT+CGG - chr6.1:75163738-75163757 None:intergenic 30.0%
!! TGTTGAACTTTAGGATCAAA+AGG - chr6.1:75165360-75165379 None:intergenic 30.0%
!! TTTGATATTGATTGCCCTTT+TGG + chr6.1:75166407-75166426 MS.gene052441:CDS 30.0%
!!! CTAATTTTTGCTGGTTTTAC+AGG + chr6.1:75164971-75164990 MS.gene052441:intron 30.0%
!!! TTTTTTTGCTCATCTTGCTA+AGG + chr6.1:75164310-75164329 MS.gene052441:CDS 30.0%
AACCAAACATACACCAATGT+TGG - chr6.1:75162810-75162829 None:intergenic 35.0%
AAGCCTGTATCACTTGAATT+AGG + chr6.1:75165059-75165078 MS.gene052441:CDS 35.0%
AAGCCTTCAATATAAAGGGT+CGG + chr6.1:75166127-75166146 MS.gene052441:intron 35.0%
AAGGAGCCACATTATTAACT+GGG + chr6.1:75165639-75165658 MS.gene052441:CDS 35.0%
AAGGCCAACAATACCAAATA+TGG + chr6.1:75166287-75166306 MS.gene052441:CDS 35.0%
AATATCCTACGTTACTATGC+CGG + chr6.1:75164083-75164102 MS.gene052441:CDS 35.0%
ACAATATTGTGTGTGTTGTC+GGG - chr6.1:75166056-75166075 None:intergenic 35.0%
AGCCATGGAGAATTGTAAAT+AGG - chr6.1:75166515-75166534 None:intergenic 35.0%
AGGGATTGTGACAAAGAATT+TGG + chr6.1:75166319-75166338 MS.gene052441:CDS 35.0%
AGTGGATATGGAAGAGATTA+TGG + chr6.1:75166443-75166462 MS.gene052441:CDS 35.0%
ATAACAGTTGGGAAATTCCA+AGG - chr6.1:75164206-75164225 None:intergenic 35.0%
ATAGGAGAGAGCAAAGATTA+TGG + chr6.1:75163947-75163966 MS.gene052441:intron 35.0%
ATTCATCGTAAATCCCTTCT+TGG - chr6.1:75165290-75165309 None:intergenic 35.0%
CAAGGTGATCACAATAAAAG+AGG + chr6.1:75163539-75163558 MS.gene052441:intron 35.0%
CACATTAGATACCAAGGATT+AGG - chr6.1:75164604-75164623 None:intergenic 35.0%
CACTTCTCCATGAACTTTAT+CGG - chr6.1:75164114-75164133 None:intergenic 35.0%
CAGACAAGCCTTCAATATAA+AGG + chr6.1:75166122-75166141 MS.gene052441:intron 35.0%
CATTGAGGAAGGAATTAAGA+AGG + chr6.1:75166268-75166287 MS.gene052441:CDS 35.0%
CATTGGATACAATTGATGGA+GGG + chr6.1:75164015-75164034 MS.gene052441:CDS 35.0%
CTCCTATTTACAATTCTCCA+TGG + chr6.1:75166510-75166529 MS.gene052441:CDS 35.0%
CTTAGCAAATGTTCTCAACT+AGG + chr6.1:75163884-75163903 MS.gene052441:intron 35.0%
CTTCTTAATTCCTTCCTCAA+TGG - chr6.1:75166270-75166289 None:intergenic 35.0%
GAAAAATGGAGAGTTTATGG+AGG + chr6.1:75163737-75163756 MS.gene052441:intron 35.0%
GAGCAAAGATTATGGTGAAA+TGG + chr6.1:75163955-75163974 MS.gene052441:CDS 35.0%
GCAAAAAAAAGTGATGAGAG+AGG - chr6.1:75164299-75164318 None:intergenic 35.0%
GCTTGAAAAGGCGAAAAATT+GGG + chr6.1:75165323-75165342 MS.gene052441:CDS 35.0%
GTAATCACTTCTTCTGTTCT+TGG - chr6.1:75162629-75162648 None:intergenic 35.0%
TAGGCCATATTTGGTATTGT+TGG - chr6.1:75166294-75166313 None:intergenic 35.0%
TCATCTTATACCCTCCAAAA+GGG - chr6.1:75166424-75166443 None:intergenic 35.0%
TCCGAAAAATGGAGAGTTTA+TGG + chr6.1:75163734-75163753 MS.gene052441:intron 35.0%
TCGGATTCAAAATACCAAGT+CGG - chr6.1:75164499-75164518 None:intergenic 35.0%
TGCTTGAAAAGGCGAAAAAT+TGG + chr6.1:75165322-75165341 MS.gene052441:CDS 35.0%
TTAGGAATTACGGTGAGTAT+TGG + chr6.1:75163289-75163308 MS.gene052441:intron 35.0%
TTCCAACATTGGTGTATGTT+TGG + chr6.1:75162805-75162824 MS.gene052441:intron 35.0%
TTGTTGGACACATTATACCT+TGG + chr6.1:75164186-75164205 MS.gene052441:CDS 35.0%
TTTACAGGTTCAACTGAAAC+AGG + chr6.1:75164999-75165018 MS.gene052441:CDS 35.0%
! ATTTGGAATCCTTCACAACA+AGG + chr6.1:75165145-75165164 MS.gene052441:CDS 35.0%
! CACTTTCCGACTTTGAAAAT+CGG - chr6.1:75164518-75164537 None:intergenic 35.0%
! CTAGATGTTTTGTCCAAGAA+GGG + chr6.1:75165274-75165293 MS.gene052441:CDS 35.0%
! CTCTTTTATTGTGATCACCT+TGG - chr6.1:75163541-75163560 None:intergenic 35.0%
! GTTTTACAGGTCAGTTTTAC+AGG + chr6.1:75164984-75165003 MS.gene052441:intron 35.0%
! TCTAGATGTTTTGTCCAAGA+AGG + chr6.1:75165273-75165292 MS.gene052441:CDS 35.0%
! TGTGCAAATGAGAAGTATGT+TGG - chr6.1:75165549-75165568 None:intergenic 35.0%
!! AACTTAGAAAGTGCCATAAC+AGG - chr6.1:75165859-75165878 None:intergenic 35.0%
!! AAGCATTTGATAATGGTCCA+TGG + chr6.1:75162705-75162724 MS.gene052441:CDS 35.0%
!! ATATTGATTGCCCTTTTGGA+GGG + chr6.1:75166411-75166430 MS.gene052441:CDS 35.0%
!! GAGAAGTGTTCAAAACTTCT+AGG + chr6.1:75164126-75164145 MS.gene052441:CDS 35.0%
!! GCAAGAGAAGCATTTGATAA+TGG + chr6.1:75162698-75162717 MS.gene052441:CDS 35.0%
!! TGAGAAGAAAGTGCTTGAAA+AGG + chr6.1:75165311-75165330 MS.gene052441:CDS 35.0%
!! TTTGGTAGCTTCTGCTATTT+TGG - chr6.1:75162651-75162670 None:intergenic 35.0%
!!! ATTCGTTTTTTTACGCTTCG+AGG - chr6.1:75163375-75163394 None:intergenic 35.0%
!!! TTCGTTTTTTTACGCTTCGA+GGG - chr6.1:75163374-75163393 None:intergenic 35.0%
ACCTCACACGCTATGAATTA+AGG - chr6.1:75164389-75164408 None:intergenic 40.0%
ACGCAAGAAGCTTGAAATGT+GGG + chr6.1:75163814-75163833 MS.gene052441:intron 40.0%
AGATTTGAACTTACAGCACC+AGG - chr6.1:75162740-75162759 None:intergenic 40.0%
AGCTGCAATAACCTCACATA+TGG + chr6.1:75164853-75164872 MS.gene052441:CDS 40.0%
AGGAGCCACATTATTAACTG+GGG + chr6.1:75165640-75165659 MS.gene052441:CDS 40.0%
ATGGAGGGAAACTATACAGT+TGG + chr6.1:75164030-75164049 MS.gene052441:CDS 40.0%
ATGGTCATGACCTGTTTGAT+AGG + chr6.1:75163929-75163948 MS.gene052441:intron 40.0%
ATGTGTCCAACAACACCAAT+AGG - chr6.1:75164179-75164198 None:intergenic 40.0%
CAATTCGTGCAGGTATCATT+TGG + chr6.1:75166366-75166385 MS.gene052441:CDS 40.0%
CCACCGACACTTTATATTGA+AGG + chr6.1:75166019-75166038 MS.gene052441:intron 40.0%
CCTCCTAATTCAAGTGATAC+AGG - chr6.1:75165065-75165084 None:intergenic 40.0%
CCTGTATCACTTGAATTAGG+AGG + chr6.1:75165062-75165081 MS.gene052441:CDS 40.0%
CTCATCTTATACCCTCCAAA+AGG - chr6.1:75166425-75166444 None:intergenic 40.0%
CTTACCCCCAGTTAATAATG+TGG - chr6.1:75165648-75165667 None:intergenic 40.0%
GAAGGAGCCACATTATTAAC+TGG + chr6.1:75165638-75165657 MS.gene052441:CDS 40.0%
GAATACCAGCCTAGATGAAA+AGG - chr6.1:75164787-75164806 None:intergenic 40.0%
GCATTGGATACAATTGATGG+AGG + chr6.1:75164014-75164033 MS.gene052441:CDS 40.0%
GCTGTTGATCTTGCACTATT+TGG + chr6.1:75165128-75165147 MS.gene052441:CDS 40.0%
GGCATAGTAACGTAGGATAT+TGG - chr6.1:75164084-75164103 None:intergenic 40.0%
GGGTATAAGATGAGTGGATA+TGG + chr6.1:75166431-75166450 MS.gene052441:CDS 40.0%
TATTGAAGGACCATTGAGGA+AGG + chr6.1:75166257-75166276 MS.gene052441:intron 40.0%
TCCTTAATTCATAGCGTGTG+AGG + chr6.1:75164385-75164404 MS.gene052441:intron 40.0%
TGACCGACCCTTTATATTGA+AGG - chr6.1:75166133-75166152 None:intergenic 40.0%
TGCATCAATGTCCATATGTG+AGG - chr6.1:75164867-75164886 None:intergenic 40.0%
TTGCGTGCCTTACAACATTT+CGG - chr6.1:75163800-75163819 None:intergenic 40.0%
TTGGACTGTCCAATCAAGTT+AGG + chr6.1:75164461-75164480 MS.gene052441:intron 40.0%
TTTGCTCTCTCCTATCAAAC+AGG - chr6.1:75163942-75163961 None:intergenic 40.0%
! AATAGGGTGCCTAAGAAGTT+TGG - chr6.1:75163701-75163720 None:intergenic 40.0%
! CGAAAGGTGTAAAAACGTTC+AGG - chr6.1:75163766-75163785 None:intergenic 40.0%
! GCAGCATTGGATACAATTGA+TGG + chr6.1:75164011-75164030 MS.gene052441:CDS 40.0%
! TTTCTCCTTTTCATCTAGGC+TGG + chr6.1:75164779-75164798 MS.gene052441:intron 40.0%
! TTTGGAGGGTATAAGATGAG+TGG + chr6.1:75166425-75166444 MS.gene052441:CDS 40.0%
! TTTTGCTCATCTTGCTAAGG+AGG + chr6.1:75164313-75164332 MS.gene052441:CDS 40.0%
!! ATGGAACCTATTGGTGTTGT+TGG + chr6.1:75164170-75164189 MS.gene052441:CDS 40.0%
!! CCTTCAATATAAAGTGTCGG+TGG - chr6.1:75166022-75166041 None:intergenic 40.0%
!! CTCTTGGTTCTGCTCAATTA+GGG - chr6.1:75163985-75164004 None:intergenic 40.0%
!! GATATTGATTGCCCTTTTGG+AGG + chr6.1:75166410-75166429 MS.gene052441:CDS 40.0%
!!! ATCTAGTTGGCTTTTGTCCA+AGG + chr6.1:75163521-75163540 MS.gene052441:intron 40.0%
!!! GATTTTGATTCGTTGCTGAC+CGG + chr6.1:75164420-75164439 MS.gene052441:intron 40.0%
AAGGCGAAAAATTGGGTCGT+TGG + chr6.1:75165330-75165349 MS.gene052441:CDS 45.0%
AGTACATTGAGCACTCCATC+TGG - chr6.1:75164809-75164828 None:intergenic 45.0%
ATCTAGGCTGGTATTCCAGA+TGG + chr6.1:75164791-75164810 MS.gene052441:intron 45.0%
ATTAACTGGGGGTAAGCAAG+TGG + chr6.1:75165652-75165671 MS.gene052441:CDS 45.0%
CACGCAAGAAGCTTGAAATG+TGG + chr6.1:75163813-75163832 MS.gene052441:intron 45.0%
CCAAGAGGAAATAGCAGCAT+TGG + chr6.1:75163998-75164017 MS.gene052441:CDS 45.0%
CCTAATTGAGCAGAACCAAG+AGG + chr6.1:75163983-75164002 MS.gene052441:CDS 45.0%
CGATGTTGTGGCTCAAATTC+CGG + chr6.1:75166160-75166179 MS.gene052441:intron 45.0%
CTCAATGTACTGCCAGGATT+TGG + chr6.1:75164818-75164837 MS.gene052441:CDS 45.0%
CTCATCTTGCTAAGGAGGTA+AGG + chr6.1:75164318-75164337 MS.gene052441:intron 45.0%
GAATTTGAGCCACAACATCG+TGG - chr6.1:75166160-75166179 None:intergenic 45.0%
GGAGCCACATTATTAACTGG+GGG + chr6.1:75165641-75165660 MS.gene052441:CDS 45.0%
GGTAAGCAAGTGGGAAACAA+AGG + chr6.1:75165662-75165681 MS.gene052441:CDS 45.0%
GGTCAATAACCACGATGTTG+TGG + chr6.1:75166148-75166167 MS.gene052441:intron 45.0%
GTGAGCTCTCCTAACTTGAT+TGG - chr6.1:75164473-75164492 None:intergenic 45.0%
TGGGGTCCTTGTTGAACTTT+AGG - chr6.1:75165369-75165388 None:intergenic 45.0%
TTAACTGGGGGTAAGCAAGT+GGG + chr6.1:75165653-75165672 MS.gene052441:CDS 45.0%
TTCAACAAGGACCCCAAGTA+AGG + chr6.1:75165373-75165392 MS.gene052441:intron 45.0%
! ATGAACTTTATCGGCTGCAC+CGG - chr6.1:75164105-75164124 None:intergenic 45.0%
! CGTTTTCGCCATCTTAGACA+TGG + chr6.1:75165901-75165920 MS.gene052441:intron 45.0%
! TTTGGCTGCTGGTTGTACTA+TGG + chr6.1:75164250-75164269 MS.gene052441:CDS 45.0%
!! CCAATGCTGCTATTTCCTCT+TGG - chr6.1:75164001-75164020 None:intergenic 45.0%
!! CCTCTTGGTTCTGCTCAATT+AGG - chr6.1:75163986-75164005 None:intergenic 45.0%
ACCAAATATGGCCTAGCAGC+AGG + chr6.1:75166299-75166318 MS.gene052441:CDS 50.0%
ATGATTTCCGTGACTGCAGG+GGG + chr6.1:75164569-75164588 MS.gene052441:intron 50.0%
CATGATTTCCGTGACTGCAG+GGG + chr6.1:75164568-75164587 MS.gene052441:intron 50.0%
CCAAATATGGCCTAGCAGCA+GGG + chr6.1:75166300-75166319 MS.gene052441:CDS 50.0%
CCAGCAGTTGAACCAAATCC+TGG - chr6.1:75164833-75164852 None:intergenic 50.0%
GCATGATTTCCGTGACTGCA+GGG + chr6.1:75164567-75164586 MS.gene052441:intron 50.0%
GCCTAAGAAGTTTGGAGGGT+GGG - chr6.1:75163693-75163712 None:intergenic 50.0%
GGGATCTGAACCCTAATCCT+TGG + chr6.1:75164590-75164609 MS.gene052441:intron 50.0%
GGGTGCCTAAGAAGTTTGGA+GGG - chr6.1:75163697-75163716 None:intergenic 50.0%
GGTGCAGCCGATAAAGTTCA+TGG + chr6.1:75164104-75164123 MS.gene052441:CDS 50.0%
GTACAACCAGCAGCCAAACA+AGG - chr6.1:75164248-75164267 None:intergenic 50.0%
GTGTCAAGGTCAATTCGTGC+AGG + chr6.1:75166356-75166375 MS.gene052441:CDS 50.0%
TCCCACCCTCCAAACTTCTT+AGG + chr6.1:75163689-75163708 MS.gene052441:intron 50.0%
TGCATGATTTCCGTGACTGC+AGG + chr6.1:75164566-75164585 MS.gene052441:intron 50.0%
TGCCTAAGAAGTTTGGAGGG+TGG - chr6.1:75163694-75163713 None:intergenic 50.0%
TGCTAAGGCTGCTCCTTGTT+TGG + chr6.1:75164232-75164251 MS.gene052441:CDS 50.0%
TTGTCACAATCCCTGCTGCT+AGG - chr6.1:75166313-75166332 None:intergenic 50.0%
! AGGGTGCCTAAGAAGTTTGG+AGG - chr6.1:75163698-75163717 None:intergenic 50.0%
! CCAGGATTTGGTTCAACTGC+TGG + chr6.1:75164830-75164849 MS.gene052441:CDS 50.0%
! CGTAGGATATTGGCTGCTTC+AGG - chr6.1:75164074-75164093 None:intergenic 50.0%
AACAGGCCGTCGAGTAATGC+AGG + chr6.1:75165016-75165035 MS.gene052441:CDS 55.0%
CCCTGCTGCTAGGCCATATT+TGG - chr6.1:75166303-75166322 None:intergenic 55.0%
CTGCAGCCTGCATTACTCGA+CGG - chr6.1:75165025-75165044 None:intergenic 55.0%
CTTACAGCACCAGGCATACG+TGG - chr6.1:75162731-75162750 None:intergenic 55.0%
TGATTTCCGTGACTGCAGGG+GGG + chr6.1:75164570-75164589 MS.gene052441:intron 55.0%
! CTGCACCGGCATAGTAACGT+AGG - chr6.1:75164091-75164110 None:intergenic 55.0%
! GGAGTGCTCAATGTACTGCC+AGG + chr6.1:75164812-75164831 MS.gene052441:CDS 55.0%
!! GAGAGAGGTGTTTGCTCAGC+AGG - chr6.1:75164284-75164303 None:intergenic 55.0%
GCGTGTGAGGTGTATCTGCG+AGG + chr6.1:75164398-75164417 MS.gene052441:intron 60.0%
GGAGAGCTCACGTTCCGACT+TGG + chr6.1:75164482-75164501 MS.gene052441:intron 60.0%
TCAGATCCCCCCTGCAGTCA+CGG - chr6.1:75164579-75164598 None:intergenic 60.0%
! GCTGCTCCTTGTTTGGCTGC+TGG + chr6.1:75164239-75164258 MS.gene052441:CDS 60.0%
GCACCAGGCATACGTGGCCA+TGG - chr6.1:75162725-75162744 None:intergenic 65.0%
GGTCCATGGCCACGTATGCC+TGG + chr6.1:75162719-75162738 MS.gene052441:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 75162569 75166538 75162569 ID=MS.gene052441
chr6.1 mRNA 75162569 75166538 75162569 ID=MS.gene052441.t1;Parent=MS.gene052441
chr6.1 exon 75162569 75162745 75162569 ID=MS.gene052441.t1.exon1;Parent=MS.gene052441.t1
chr6.1 CDS 75162569 75162745 75162569 ID=cds.MS.gene052441.t1;Parent=MS.gene052441.t1
chr6.1 exon 75163951 75164334 75163951 ID=MS.gene052441.t1.exon2;Parent=MS.gene052441.t1
chr6.1 CDS 75163951 75164334 75163951 ID=cds.MS.gene052441.t1;Parent=MS.gene052441.t1
chr6.1 exon 75164797 75164886 75164797 ID=MS.gene052441.t1.exon3;Parent=MS.gene052441.t1
chr6.1 CDS 75164797 75164886 75164797 ID=cds.MS.gene052441.t1;Parent=MS.gene052441.t1
chr6.1 exon 75164993 75165166 75164993 ID=MS.gene052441.t1.exon4;Parent=MS.gene052441.t1
chr6.1 CDS 75164993 75165166 75164993 ID=cds.MS.gene052441.t1;Parent=MS.gene052441.t1
chr6.1 exon 75165252 75165389 75165252 ID=MS.gene052441.t1.exon5;Parent=MS.gene052441.t1
chr6.1 CDS 75165252 75165389 75165252 ID=cds.MS.gene052441.t1;Parent=MS.gene052441.t1
chr6.1 exon 75165584 75165721 75165584 ID=MS.gene052441.t1.exon6;Parent=MS.gene052441.t1
chr6.1 CDS 75165584 75165721 75165584 ID=cds.MS.gene052441.t1;Parent=MS.gene052441.t1
chr6.1 exon 75165820 75165881 75165820 ID=MS.gene052441.t1.exon7;Parent=MS.gene052441.t1
chr6.1 CDS 75165820 75165881 75165820 ID=cds.MS.gene052441.t1;Parent=MS.gene052441.t1
chr6.1 exon 75166265 75166538 75166265 ID=MS.gene052441.t1.exon8;Parent=MS.gene052441.t1
chr6.1 CDS 75166265 75166538 75166265 ID=cds.MS.gene052441.t1;Parent=MS.gene052441.t1
Gene Sequence

>MS.gene052441

ATGCATATTGGATTTTTTGTTGAAATAAAAAAAGGAAAAACTTTTGAGACTGTTGATCCAAGAACAGAAGAAGTGATTACCAAAATAGCAGAAGCTACCAAAGAAGATGTTGATATTGCTGTGAAAGCTGCAAGAGAAGCATTTGATAATGGTCCATGGCCACGTATGCCTGGTGCTGTAAGTTCAAATCTTCACCTATTTTAAAGTTTGTGTAACAACATACTCTAATACTTTTTTTCCAACATTGGTGTATGTTTGGTTTTAATTTTGAATGTGACAAAATTAATTTTTTTTTTGAACAAGATGTGACAAAATTAATTACATAAGTATAGAATTGATTTTTGACATTTTTGGTTGTTATCGGAGAATTGATTTTGCTTGTAGAACAGATTCTAACTTATAATTTGTAGTTTTTGACGCAACAAGATTTTTCCATTCAAATTTATTGTTCAAATCATTTCTAAGTGAACGTATTCAAACATACTCCTTTGATTACATTTATAAATAATTTTTGTTTTTTCAAATTTATTAAATAACTGATGTATCTGGACTATATTATAATCAAGATACATCAGTTATTTAATGAATCTGAAAAAGCAAAATTGCTTATAAATGTCACAAGAGGGAGTAAATCACTTCACAATCAACTTATTTTAACTAAAATCAATTTCACAAAATAATTTCATGTGGGTCCCACTTCTATAAGAGATTGAGTTTATGTTAGGAATTACGGTGAGTATTGGTAGCACCAACCTTAACAATGACAATTTTACAACCGTTTTCGAGTAGATTTGATCTTCATCCCTCGAAGCGTAAAAAAACGAATTTGTGGATTTTCTTGGTGAAAAGTTGCATTAGCAAGCATCATTCATAAATTACTCATTGAACACAAATATTTCATAAATTATTGCAAGGCTACTTTCATTTATTTAACTATTTTATATGAGTAGTCATCTAGTTGGCTTTTGTCCAAGGTGATCACAATAAAAGAGGGAACATACTTTTGACATCCCTTTAAGAGTGCATATGAAAAGTAAAAAATAAAGTGAATATTGAGAAAGACAAAAAATATGTAAGGAATGTATAAAATAAGTGGCTGTAGAAATATATAATTTTCTTTTCCCACCCTCCAAACTTCTTAGGCACCCTATTTCGAATTTTAAAATCCGAAAAATGGAGAGTTTATGGAGGGTTCCTGAACGTTTTTACACCTTTCGAGTTATATAATCCGAAATGTTGTAAGGCACGCAAGAAGCTTGAAATGTGGGAAAAGAAACTCGCAAAAAATAATGCTAACAAATTTTCACACAAAGAACTTAGCAAATGTTCTCAACTAGGAAGCAACATGCATTAATTTGATATGGTCATGACCTGTTTGATAGGAGAGAGCAAAGATTATGGTGAAATGGGCAACCCTAATTGAGCAGAACCAAGAGGAAATAGCAGCATTGGATACAATTGATGGAGGGAAACTATACAGTTGGTGTAAGACAGTAGATGTGCCTGAAGCAGCCAATATCCTACGTTACTATGCCGGTGCAGCCGATAAAGTTCATGGAGAAGTGTTCAAAACTTCTAGGAATCTTCATATGTATACTTTGATGGAACCTATTGGTGTTGTTGGACACATTATACCTTGGAATTTCCCAACTGTTATGTTCTTTGCTAAGGCTGCTCCTTGTTTGGCTGCTGGTTGTACTATGGTTCTTAAGCCTGCTGAGCAAACACCTCTCTCATCACTTTTTTTTGCTCATCTTGCTAAGGAGGTAAGGTTAAAGAAAATTTATCGAGTTGGTTTTGAAAGATTGTTTATAGTTCCTTAATTCATAGCGTGTGAGGTGTATCTGCGAGGATTTTGATTCGTTGCTGACCGGAAATTCAAATCAAGCAATTTGGACTGTCCAATCAAGTTAGGAGAGCTCACGTTCCGACTTGGTATTTTGAATCCGATTTTCAAAGTCGGAAAGTGAAAAGTCCAATCTTAATATGATGTCAAATGCATGATTTCCGTGACTGCAGGGGGGATCTGAACCCTAATCCTTGGTATCTAATGTGTTTATGTCTAGTTTGTTAGCATCACCAATACATGTATGAAAATATGTTACCATATGTTCAATTTAAGAAAATTTGTACCTATTTCTACTTTTAAACTTTTATACTAATTAATAATTACAAAAATATCACTTTGTTTCTTAAGACTTTCTTGTTTCTTTCTCCTTTTCATCTAGGCTGGTATTCCAGATGGAGTGCTCAATGTACTGCCAGGATTTGGTTCAACTGCTGGAGCTGCAATAACCTCACATATGGACATTGATGCAGTAATTTGCCTAACAAAAAATTTTTACGCCATGGATTAAGTTAAAGATGCATTACATTTCACAAAAACTAGGCATTGACAACTACTAATTTTTGCTGGTTTTACAGGTCAGTTTTACAGGTTCAACTGAAACAGGCCGTCGAGTAATGCAGGCTGCAGCAATGAGCAATTTGAAGCCTGTATCACTTGAATTAGGAGGCAAGTCGCCTGTTTTAATTTTCGATGATGCTGATGTTGATAAAGCTGTTGATCTTGCACTATTTGGAATCCTTCACAACAAGGTATATAATTTTACCTTCAAGGAAAATCTTGTAACATAAAAAAGATCAAAGACTTGTTACTTAAGTAACTCTTTGTAATTTTCAGGGAGAAATATGTGTTGCATATTCTAGATGTTTTGTCCAAGAAGGGATTTACGATGAATTTGAGAAGAAAGTGCTTGAAAAGGCGAAAAATTGGGTCGTTGGTGACCCTTTTGATCCTAAAGTTCAACAAGGACCCCAAGTAAGGATACTAATATGCACAATAATTCAAAATAGATTCCTTATTGTAAATGTGTTACACAATTACATATCTCGACCATCTAATCTCAAATCAATGATCAAGATCATTTGAAATTGATTTACGCGCTTTATAATTAGAATCAGAAGGAAATCGTTACCAACATACTTCTCATTTGCACATTATTTTCTTTGCAGACTAGTAAGGCGCAATTTGATAAAATTCTTTCCTATATTAAACATGGAAAGAATGAAGGAGCCACATTATTAACTGGGGGTAAGCAAGTGGGAAACAAAGGATACTACATTGAGCCTACTATTTTTACCAATGTTACGGTATATTTCTACTCTACCAAGAAAATTGAAACCATATGTCATTCTCATAACTGAAGAATAAAACTAATTTTTATTTAATTTTTTGAAAATTTGTGTAGGATGACATGTTAATAGCACAAGATGAAATATTTGGACCTGTTATGGCACTTTCTAAGTTCAAGTAAGTATAATTTATATTTCGTTTTCGCCATCTTAGACATGGTTTTAAATTAGAGTCGCAATAATATCAAAATTTTAAATATTATAGAAAATTGCGGTCAAATATAATTCGTGTTAAAGTCGAAGAGACATCTAAAACCACCGACACTTTATATTGAAGGCATGCTTGATGCCCGACAACACACACAATATTGTAGTGCACATAATTGCATGTGTCAATATTGTGAGTGTTGTCAAGCATCAGACAAGCCTTCAATATAAAGGGTCGGTCAATAACCACGATGTTGTGGCTCAAATTCCGGTCACAAACTTTTTTTAAACCCTAAACTTAGTTTTAAAAGATATTTATGAATATGCACCTAAATGTTGAATTAAATATTGAAGGACCATTGAGGAAGGAATTAAGAAGGCCAACAATACCAAATATGGCCTAGCAGCAGGGATTGTGACAAAGAATTTGGATATTGCAAATACTGTGTCAAGGTCAATTCGTGCAGGTATCATTTGGATCAATTGCTATTTTGCCTTTGATATTGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATATGGAAGAGATTATGGATTGGAAGCACTTCACAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCATGGCTTTAA
Protein sequence

>MS.gene052441.t1

MHIGFFVEIKKGKTFETVDPRTEEVITKIAEATKEDVDIAVKAAREAFDNGPWPRMPGAERAKIMVKWATLIEQNQEEIAALDTIDGGKLYSWCKTVDVPEAANILRYYAGAADKVHGEVFKTSRNLHMYTLMEPIGVVGHIIPWNFPTVMFFAKAAPCLAAGCTMVLKPAEQTPLSSLFFAHLAKEAGIPDGVLNVLPGFGSTAGAAITSHMDIDAVSFTGSTETGRRVMQAAAMSNLKPVSLELGGKSPVLIFDDADVDKAVDLALFGILHNKGEICVAYSRCFVQEGIYDEFEKKVLEKAKNWVVGDPFDPKVQQGPQTSKAQFDKILSYIKHGKNEGATLLTGGKQVGNKGYYIEPTIFTNVTDDMLIAQDEIFGPVMALSKFKTIEEGIKKANNTKYGLAAGIVTKNLDIANTVSRSIRAGIIWINCYFAFDIDCPFGGYKMSGYGRDYGLEALHKYLQVKSVATPIYNSPWL