Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35690.t1 | XP_003596846.1 | 95.9 | 220 | 9 | 0 | 1 | 220 | 1 | 220 | 7.80E-95 | 356.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35690.t1 | G7IHF9 | 95.9 | 220 | 9 | 0 | 1 | 220 | 1 | 220 | 1.9e-97 | 356.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35690.t1 | A0A396JB04 | 95.9 | 220 | 9 | 0 | 1 | 220 | 1 | 220 | 5.6e-95 | 356.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene35690 | 0.807149 | 5.82E-50 | -1.69E-46 |
| MS.gene049549 | MS.gene35690 | 0.820217 | 7.71E-53 | -1.69E-46 |
| MS.gene050133 | MS.gene35690 | 0.841627 | 4.24E-58 | -1.69E-46 |
| MS.gene050426 | MS.gene35690 | 0.814152 | 1.78E-51 | -1.69E-46 |
| MS.gene051158 | MS.gene35690 | 0.809669 | 1.69E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene35690 | -0.804829 | 1.79E-49 | -1.69E-46 |
| MS.gene051552 | MS.gene35690 | 0.80473 | 1.88E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene35690 | 0.833197 | 6.12E-56 | -1.69E-46 |
| MS.gene052011 | MS.gene35690 | 0.819351 | 1.22E-52 | -1.69E-46 |
| MS.gene052134 | MS.gene35690 | -0.825965 | 3.52E-54 | -1.69E-46 |
| MS.gene052135 | MS.gene35690 | -0.817431 | 3.31E-52 | -1.69E-46 |
| MS.gene052136 | MS.gene35690 | -0.800904 | 1.16E-48 | -1.69E-46 |
| MS.gene052223 | MS.gene35690 | 0.874938 | 4.57E-68 | -1.69E-46 |
| MS.gene05240 | MS.gene35690 | 0.80979 | 1.59E-50 | -1.69E-46 |
| MS.gene052705 | MS.gene35690 | 0.812815 | 3.51E-51 | -1.69E-46 |
| MS.gene052706 | MS.gene35690 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene052758 | MS.gene35690 | -0.809017 | 2.33E-50 | -1.69E-46 |
| MS.gene054102 | MS.gene35690 | -0.809802 | 1.58E-50 | -1.69E-46 |
| MS.gene054138 | MS.gene35690 | 0.842164 | 3.06E-58 | -1.69E-46 |
| MS.gene054147 | MS.gene35690 | 0.800202 | 1.61E-48 | -1.69E-46 |
| MS.gene054277 | MS.gene35690 | 0.841974 | 3.43E-58 | -1.69E-46 |
| MS.gene054742 | MS.gene35690 | 0.872325 | 3.47E-67 | -1.69E-46 |
| MS.gene055595 | MS.gene35690 | 0.805387 | 1.37E-49 | -1.69E-46 |
| MS.gene055597 | MS.gene35690 | 0.809868 | 1.53E-50 | -1.69E-46 |
| MS.gene055601 | MS.gene35690 | 0.80354 | 3.32E-49 | -1.69E-46 |
| MS.gene056330 | MS.gene35690 | 0.881322 | 2.64E-70 | -1.69E-46 |
| MS.gene056337 | MS.gene35690 | -0.800514 | 1.39E-48 | -1.69E-46 |
| MS.gene056514 | MS.gene35690 | -0.80035 | 1.50E-48 | -1.69E-46 |
| MS.gene056690 | MS.gene35690 | 0.831683 | 1.45E-55 | -1.69E-46 |
| MS.gene056691 | MS.gene35690 | 0.815484 | 9.03E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene35690 | 0.82394 | 1.06E-53 | -1.69E-46 |
| MS.gene056920 | MS.gene35690 | 0.861787 | 8.02E-64 | -1.69E-46 |
| MS.gene056922 | MS.gene35690 | 0.851413 | 9.02E-61 | -1.69E-46 |
| MS.gene056923 | MS.gene35690 | 0.860088 | 2.64E-63 | -1.69E-46 |
| MS.gene056924 | MS.gene35690 | 0.857336 | 1.75E-62 | -1.69E-46 |
| MS.gene056925 | MS.gene35690 | 0.821897 | 3.16E-53 | -1.69E-46 |
| MS.gene059043 | MS.gene35690 | 0.823185 | 1.59E-53 | -1.69E-46 |
| MS.gene059328 | MS.gene35690 | 0.829756 | 4.31E-55 | -1.69E-46 |
| MS.gene059402 | MS.gene35690 | 0.806362 | 8.53E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene35690 | -0.804626 | 1.97E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene35690 | 0.854201 | 1.44E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35690.t1 | MTR_2g086740 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 2.13e-157 | 434 |
| MS.gene35690.t1 | MTR_2g086740 | 96.667 | 150 | 5 | 0 | 1 | 150 | 1 | 150 | 8.28e-106 | 301 |
| MS.gene35690.t1 | MTR_1g058540 | 59.064 | 171 | 70 | 0 | 49 | 219 | 25 | 195 | 4.12e-61 | 190 |
| MS.gene35690.t1 | MTR_1g058560 | 59.538 | 173 | 70 | 0 | 47 | 219 | 22 | 194 | 2.04e-57 | 180 |
| MS.gene35690.t1 | MTR_1g058570 | 56.725 | 171 | 74 | 0 | 49 | 219 | 23 | 193 | 3.29e-55 | 175 |
| MS.gene35690.t1 | MTR_7g011090 | 48.276 | 174 | 90 | 0 | 46 | 219 | 12 | 185 | 1.41e-50 | 162 |
| MS.gene35690.t1 | MTR_4g081880 | 43.243 | 185 | 99 | 1 | 42 | 220 | 3 | 187 | 1.08e-46 | 153 |
| MS.gene35690.t1 | MTR_5g041900 | 43.590 | 195 | 100 | 1 | 26 | 220 | 2 | 186 | 4.12e-42 | 141 |
| MS.gene35690.t1 | MTR_7g083120 | 33.094 | 139 | 90 | 2 | 65 | 202 | 33 | 169 | 3.80e-16 | 73.9 |
| MS.gene35690.t1 | MTR_0004s0210 | 34.899 | 149 | 84 | 4 | 55 | 201 | 1 | 138 | 6.16e-16 | 72.8 |
| MS.gene35690.t1 | MTR_7g108130 | 28.877 | 187 | 115 | 5 | 24 | 206 | 3 | 175 | 4.40e-15 | 71.2 |
| MS.gene35690.t1 | MTR_3g064310 | 28.141 | 199 | 103 | 5 | 40 | 216 | 7 | 187 | 3.36e-14 | 69.3 |
| MS.gene35690.t1 | MTR_0097s0070 | 29.565 | 115 | 81 | 0 | 99 | 213 | 71 | 185 | 4.90e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35690.t1 | AT2G27370 | 49.091 | 220 | 103 | 4 | 3 | 220 | 8 | 220 | 3.56e-64 | 198 |
| MS.gene35690.t1 | AT2G36100 | 54.762 | 168 | 76 | 0 | 52 | 219 | 38 | 205 | 9.44e-59 | 184 |
| MS.gene35690.t1 | AT5G06200 | 60.479 | 167 | 66 | 0 | 53 | 219 | 35 | 201 | 3.92e-54 | 172 |
| MS.gene35690.t1 | AT5G15290 | 49.686 | 159 | 79 | 1 | 43 | 200 | 8 | 166 | 1.53e-51 | 165 |
| MS.gene35690.t1 | AT3G11550 | 59.880 | 167 | 67 | 0 | 53 | 219 | 37 | 203 | 6.86e-50 | 161 |
| MS.gene35690.t1 | AT1G14160 | 43.030 | 165 | 94 | 0 | 55 | 219 | 44 | 208 | 2.74e-42 | 142 |
| MS.gene35690.t1 | AT1G17200 | 29.193 | 161 | 105 | 3 | 58 | 217 | 29 | 181 | 2.77e-15 | 72.0 |
| MS.gene35690.t1 | AT3G06390 | 28.161 | 174 | 104 | 4 | 24 | 190 | 11 | 170 | 3.28e-15 | 71.6 |
| MS.gene35690.t1 | AT5G44550 | 30.247 | 162 | 101 | 4 | 66 | 219 | 22 | 179 | 5.97e-12 | 62.8 |
| MS.gene35690.t1 | AT1G03700 | 32.000 | 150 | 80 | 5 | 65 | 206 | 12 | 147 | 2.96e-11 | 60.1 |
| MS.gene35690.t1 | AT4G15610 | 27.545 | 167 | 117 | 2 | 40 | 202 | 7 | 173 | 5.35e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGTTCTCTTGGATTCT+AGG | 0.131201 | 2.4:+13645133 | None:intergenic |
| TCTTGGTGCTTCTGTCATTA+TGG | 0.177988 | 2.4:-13644956 | MS.gene35690:CDS |
| TACCTAATTGCAGGTATTAA+TGG | 0.240857 | 2.4:-13644049 | MS.gene35690:intron |
| TCCATTGCTTCTTGTTCTCT+TGG | 0.247900 | 2.4:+13645125 | None:intergenic |
| CTTGGTGCTTCTGTCATTAT+GGG | 0.276810 | 2.4:-13644955 | MS.gene35690:CDS |
| AAATCTACTCCAATCCAAAA+AGG | 0.350579 | 2.4:-13645042 | MS.gene35690:CDS |
| TCCTTCAGTTTCATGCTCAA+TGG | 0.391797 | 2.4:-13644897 | MS.gene35690:CDS |
| CCTTCAGTTTCATGCTCAAT+GGG | 0.394063 | 2.4:-13644896 | MS.gene35690:CDS |
| GGTGCCATTGGTGCTACTCT+TGG | 0.400369 | 2.4:-13644973 | MS.gene35690:CDS |
| TGTTCTCTTGGATTCTAGGA+TGG | 0.406134 | 2.4:+13645137 | None:intergenic |
| GCAGGTATTAATGGCCTTAG+TGG | 0.406928 | 2.4:-13644040 | MS.gene35690:intron |
| ACATGAACTTACTTAAACAT+TGG | 0.425523 | 2.4:+13644865 | None:intergenic |
| AGAACAAGAAGCAATGGAAA+AGG | 0.427010 | 2.4:-13645120 | MS.gene35690:CDS |
| ACACCACAACCAAACAAGAT+AGG | 0.440488 | 2.4:+13643869 | None:intergenic |
| ATGGGAGTCAAGATGCAAAC+TGG | 0.445257 | 2.4:-13643972 | MS.gene35690:CDS |
| GTTCTCTTGGATTCTAGGAT+GGG | 0.446748 | 2.4:+13645138 | None:intergenic |
| CTAAACATGCAGGTTCTTTG+TGG | 0.448810 | 2.4:-13644293 | MS.gene35690:intron |
| GAACAAGAAGCAATGGAAAA+GGG | 0.449907 | 2.4:-13645119 | MS.gene35690:CDS |
| ATTGTTAGACCCCTTGCAGC+TGG | 0.465698 | 2.4:-13644211 | MS.gene35690:CDS |
| GGAAAAGGGAAATCCATTGA+TGG | 0.488181 | 2.4:-13645105 | MS.gene35690:CDS |
| TTTCCTATCTTGTTTGGTTG+TGG | 0.489463 | 2.4:-13643872 | MS.gene35690:CDS |
| CCAAGGTTCAAGTTTGGCTG+TGG | 0.491266 | 2.4:-13643917 | MS.gene35690:CDS |
| GTGGCAAATGGAGCAGCAGC+TGG | 0.512854 | 2.4:-13644271 | MS.gene35690:CDS |
| TTGTGTACTTAGCACACAAT+GGG | 0.520027 | 2.4:-13643990 | MS.gene35690:CDS |
| TGTCTTCTGTAGCTCTCAAA+AGG | 0.525875 | 2.4:-13643849 | MS.gene35690:CDS |
| AGGTTCTTTGTGGTGGCAAA+TGG | 0.527477 | 2.4:-13644283 | MS.gene35690:CDS |
| GACCCCTTGCAGCTGGTCCA+CGG | 0.529518 | 2.4:-13644204 | MS.gene35690:CDS |
| TCCAAGAGAACAAGAAGCAA+TGG | 0.530743 | 2.4:-13645126 | MS.gene35690:CDS |
| CCACAGCCAAACTTGAACCT+TGG | 0.532217 | 2.4:+13643917 | None:intergenic |
| AGGAGAATGATCTCCATCAA+TGG | 0.544643 | 2.4:+13645092 | None:intergenic |
| TGAAGCAGCTGCAACCACTA+AGG | 0.546688 | 2.4:+13644026 | None:intergenic |
| TGAAGGAACTGAGTAAAGAA+AGG | 0.555422 | 2.4:+13644913 | None:intergenic |
| AATCCGTGGACCAGCTGCAA+GGG | 0.560165 | 2.4:+13644201 | None:intergenic |
| AACATGCAGGTTCTTTGTGG+TGG | 0.566783 | 2.4:-13644290 | MS.gene35690:intron |
| GGACTCAAGAAGAGAAGTTG+AGG | 0.570390 | 2.4:-13645175 | MS.gene35690:CDS |
| GGTTGTTTCTTTCGTTGCGT+CGG | 0.570523 | 2.4:-13643896 | MS.gene35690:CDS |
| TTGGTGCTTCTGTCATTATG+GGG | 0.574068 | 2.4:-13644954 | MS.gene35690:CDS |
| GCAGACAATTGAGAATGGTA+AGG | 0.574191 | 2.4:+13644234 | None:intergenic |
| ACAATGCAGACAATTGAGAA+TGG | 0.577153 | 2.4:+13644229 | None:intergenic |
| CCCATTGAGCATGAAACTGA+AGG | 0.601992 | 2.4:+13644896 | None:intergenic |
| GAATCCGTGGACCAGCTGCA+AGG | 0.605753 | 2.4:+13644200 | None:intergenic |
| AGCACCAAGAGTAGCACCAA+TGG | 0.630653 | 2.4:+13644969 | None:intergenic |
| GTTGTGTACTTAGCACACAA+TGG | 0.633961 | 2.4:-13643991 | MS.gene35690:CDS |
| ATCCGTGGACCAGCTGCAAG+GGG | 0.635198 | 2.4:+13644202 | None:intergenic |
| CAATTGAGAATGGTAAGGAG+AGG | 0.647713 | 2.4:+13644239 | None:intergenic |
| ACAACAGTTGCAGCATGTGG+AGG | 0.650553 | 2.4:+13645072 | None:intergenic |
| GTAACAACAGTTGCAGCATG+TGG | 0.663640 | 2.4:+13645069 | None:intergenic |
| ACGATGACAAGTAGAATCCG+TGG | 0.676654 | 2.4:+13644187 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACAATTAATTGTATTTT+TGG | - | chr2.4:13644277-13644296 | MS.gene35690:CDS | 10.0% |
| !! | AAAAAAAAAATGTTCTTAGA+GGG | - | chr2.4:13644521-13644540 | MS.gene35690:intron | 15.0% |
| !! | AAACAATAAATTTCAAGAAT+AGG | - | chr2.4:13644471-13644490 | MS.gene35690:intron | 15.0% |
| !!! | TTTAAATATCATCCTTTTTA+TGG | - | chr2.4:13644702-13644721 | MS.gene35690:intron | 15.0% |
| !! | AATTGTGTTTCAGTTAAAAT+AGG | + | chr2.4:13644307-13644326 | None:intergenic | 20.0% |
| !! | ATAGTATTGTAAAGATCAAA+TGG | + | chr2.4:13644198-13644217 | None:intergenic | 20.0% |
| !! | GAAAAAAAAAATGTTCTTAG+AGG | - | chr2.4:13644520-13644539 | MS.gene35690:intron | 20.0% |
| !! | TAGTATTGTAAAGATCAAAT+GGG | + | chr2.4:13644197-13644216 | None:intergenic | 20.0% |
| !!! | AGAAAAAAGTTTTGAAACAA+GGG | + | chr2.4:13644364-13644383 | None:intergenic | 20.0% |
| ! | ACATGAACTTACTTAAACAT+TGG | + | chr2.4:13644158-13644177 | None:intergenic | 25.0% |
| ! | AGTAAGTTCATGTTACATAA+CGG | - | chr2.4:13644165-13644184 | MS.gene35690:intron | 25.0% |
| ! | TTACATCCGATAAATGAAAT+CGG | - | chr2.4:13644495-13644514 | MS.gene35690:intron | 25.0% |
| ! | TTTCTTCCGATTTCATTTAT+CGG | + | chr2.4:13644504-13644523 | None:intergenic | 25.0% |
| !! | CAATCTTAGACTTCATTTTA+AGG | - | chr2.4:13644021-13644040 | MS.gene35690:CDS | 25.0% |
| !!! | AACACTTTTTAAGAATGACT+TGG | - | chr2.4:13644246-13644265 | MS.gene35690:CDS | 25.0% |
| !!! | GAAAAAAGTTTTGAAACAAG+GGG | + | chr2.4:13644363-13644382 | None:intergenic | 25.0% |
| !!! | GAGAAAAAAGTTTTGAAACA+AGG | + | chr2.4:13644365-13644384 | None:intergenic | 25.0% |
| !!! | TTTTCTCACAACTTAATTTG+AGG | - | chr2.4:13644378-13644397 | MS.gene35690:intron | 25.0% |
| AAATCTACTCCAATCCAAAA+AGG | - | chr2.4:13643978-13643997 | MS.gene35690:CDS | 30.0% | |
| AACATGTCACGTCATAAAAT+AGG | + | chr2.4:13644407-13644426 | None:intergenic | 30.0% | |
| CAAAAAGGTGGAATGAAAAA+GGG | - | chr2.4:13643993-13644012 | MS.gene35690:CDS | 30.0% | |
| GCATGTTTAGATCCATAAAA+AGG | + | chr2.4:13644717-13644736 | None:intergenic | 30.0% | |
| TACCTAATTGCAGGTATTAA+TGG | - | chr2.4:13644971-13644990 | MS.gene35690:CDS | 30.0% | |
| TGTGTTTCAGTTAAAATAGG+AGG | + | chr2.4:13644304-13644323 | None:intergenic | 30.0% | |
| ! | TTTTATGGATCTAAACATGC+AGG | - | chr2.4:13644717-13644736 | MS.gene35690:intron | 30.0% |
| !! | ACGATATGAGAGTGTTTATT+TGG | + | chr2.4:13644553-13644572 | None:intergenic | 30.0% |
| !!! | TAAACAATGTTTTGATGACG+TGG | + | chr2.4:13644586-13644605 | None:intergenic | 30.0% |
| !!! | TTAGACTTCATTTTAAGGCT+TGG | - | chr2.4:13644026-13644045 | MS.gene35690:CDS | 30.0% |
| ACAATGCAGACAATTGAGAA+TGG | + | chr2.4:13644794-13644813 | None:intergenic | 35.0% | |
| AGAACAAGAAGCAATGGAAA+AGG | - | chr2.4:13643900-13643919 | MS.gene35690:CDS | 35.0% | |
| CCAAAAAGGTGGAATGAAAA+AGG | - | chr2.4:13643992-13644011 | MS.gene35690:CDS | 35.0% | |
| CGAAATTGCAAGGATATGAA+GGG | + | chr2.4:13644658-13644677 | None:intergenic | 35.0% | |
| GAACAAGAAGCAATGGAAAA+GGG | - | chr2.4:13643901-13643920 | MS.gene35690:CDS | 35.0% | |
| TGAAGGAACTGAGTAAAGAA+AGG | + | chr2.4:13644110-13644129 | None:intergenic | 35.0% | |
| TTCTTGTTCTCTTGGATTCT+AGG | + | chr2.4:13643890-13643909 | None:intergenic | 35.0% | |
| TTGTGTACTTAGCACACAAT+GGG | - | chr2.4:13645030-13645049 | MS.gene35690:CDS | 35.0% | |
| ! | TTCATTCCACCTTTTTGGAT+TGG | + | chr2.4:13643990-13644009 | None:intergenic | 35.0% |
| ! | TTTCCTATCTTGTTTGGTTG+TGG | - | chr2.4:13645148-13645167 | MS.gene35690:CDS | 35.0% |
| !! | CCTTTTTCATTCCACCTTTT+TGG | + | chr2.4:13643995-13644014 | None:intergenic | 35.0% |
| !! | TTTTTGCCAAGGTTCAAGTT+TGG | - | chr2.4:13645097-13645116 | MS.gene35690:CDS | 35.0% |
| AATGTTCGCTACCTAATTGC+AGG | - | chr2.4:13644962-13644981 | MS.gene35690:CDS | 40.0% | |
| AATTGCAAGGATATGAAGGG+AGG | + | chr2.4:13644655-13644674 | None:intergenic | 40.0% | |
| ACACCACAACCAAACAAGAT+AGG | + | chr2.4:13645154-13645173 | None:intergenic | 40.0% | |
| AGGAGAATGATCTCCATCAA+TGG | + | chr2.4:13643931-13643950 | None:intergenic | 40.0% | |
| CAATTGAGAATGGTAAGGAG+AGG | + | chr2.4:13644784-13644803 | None:intergenic | 40.0% | |
| CCTTCAGTTTCATGCTCAAT+GGG | - | chr2.4:13644124-13644143 | MS.gene35690:intron | 40.0% | |
| CTAAACATGCAGGTTCTTTG+TGG | - | chr2.4:13644727-13644746 | MS.gene35690:intron | 40.0% | |
| CTATAGCAAGTAAAGATGCC+AGG | + | chr2.4:13644681-13644700 | None:intergenic | 40.0% | |
| GCAGACAATTGAGAATGGTA+AGG | + | chr2.4:13644789-13644808 | None:intergenic | 40.0% | |
| GCGAAATTGCAAGGATATGA+AGG | + | chr2.4:13644659-13644678 | None:intergenic | 40.0% | |
| GGAAAAGGGAAATCCATTGA+TGG | - | chr2.4:13643915-13643934 | MS.gene35690:CDS | 40.0% | |
| GGCCATTAATACCTGCAATT+AGG | + | chr2.4:13644976-13644995 | None:intergenic | 40.0% | |
| GTTGTGTACTTAGCACACAA+TGG | - | chr2.4:13645029-13645048 | MS.gene35690:CDS | 40.0% | |
| TCCAAGAGAACAAGAAGCAA+TGG | - | chr2.4:13643894-13643913 | MS.gene35690:CDS | 40.0% | |
| TCCATTGCTTCTTGTTCTCT+TGG | + | chr2.4:13643898-13643917 | None:intergenic | 40.0% | |
| TCCTTCAGTTTCATGCTCAA+TGG | - | chr2.4:13644123-13644142 | MS.gene35690:intron | 40.0% | |
| TCTACTCCAATCCAAAAAGG+TGG | - | chr2.4:13643981-13644000 | MS.gene35690:CDS | 40.0% | |
| TGTCTTCTGTAGCTCTCAAA+AGG | - | chr2.4:13645171-13645190 | MS.gene35690:CDS | 40.0% | |
| ! | TGTTCTCTTGGATTCTAGGA+TGG | + | chr2.4:13643886-13643905 | None:intergenic | 40.0% |
| ! | TTGGTGCTTCTGTCATTATG+GGG | - | chr2.4:13644066-13644085 | MS.gene35690:intron | 40.0% |
| !! | CTTGGTGCTTCTGTCATTAT+GGG | - | chr2.4:13644065-13644084 | MS.gene35690:intron | 40.0% |
| !! | GTCGGTTTTCCTATCTTGTT+TGG | - | chr2.4:13645142-13645161 | MS.gene35690:CDS | 40.0% |
| !! | GTTCTCTTGGATTCTAGGAT+GGG | + | chr2.4:13643885-13643904 | None:intergenic | 40.0% |
| !! | TCTTGGTGCTTCTGTCATTA+TGG | - | chr2.4:13644064-13644083 | MS.gene35690:intron | 40.0% |
| !!! | ATTTTAAGGCTTGGTGCCAT+TGG | - | chr2.4:13644035-13644054 | MS.gene35690:CDS | 40.0% |
| !!! | CAGTTCACTGATTTTTGCCA+AGG | - | chr2.4:13645086-13645105 | MS.gene35690:CDS | 40.0% |
| AACATGCAGGTTCTTTGTGG+TGG | - | chr2.4:13644730-13644749 | MS.gene35690:intron | 45.0% | |
| ACGATGACAAGTAGAATCCG+TGG | + | chr2.4:13644836-13644855 | None:intergenic | 45.0% | |
| AGGTTCTTTGTGGTGGCAAA+TGG | - | chr2.4:13644737-13644756 | MS.gene35690:intron | 45.0% | |
| ATGGGAGTCAAGATGCAAAC+TGG | - | chr2.4:13645048-13645067 | MS.gene35690:CDS | 45.0% | |
| CATATCCTTGCAATTTCGCC+TGG | - | chr2.4:13644660-13644679 | MS.gene35690:intron | 45.0% | |
| CCCATTGAGCATGAAACTGA+AGG | + | chr2.4:13644127-13644146 | None:intergenic | 45.0% | |
| GGACTCAAGAAGAGAAGTTG+AGG | - | chr2.4:13643845-13643864 | MS.gene35690:CDS | 45.0% | |
| GTAACAACAGTTGCAGCATG+TGG | + | chr2.4:13643954-13643973 | None:intergenic | 45.0% | |
| ! | GCAGGTATTAATGGCCTTAG+TGG | - | chr2.4:13644980-13644999 | MS.gene35690:CDS | 45.0% |
| !! | GGTTGTTTCTTTCGTTGCGT+CGG | - | chr2.4:13645124-13645143 | MS.gene35690:CDS | 45.0% |
| ACAACAGTTGCAGCATGTGG+AGG | + | chr2.4:13643951-13643970 | None:intergenic | 50.0% | |
| AGATGCCAGGCGAAATTGCA+AGG | + | chr2.4:13644668-13644687 | None:intergenic | 50.0% | |
| AGCACCAAGAGTAGCACCAA+TGG | + | chr2.4:13644054-13644073 | None:intergenic | 50.0% | |
| ATTGTTAGACCCCTTGCAGC+TGG | - | chr2.4:13644809-13644828 | MS.gene35690:intron | 50.0% | |
| CCACAGCCAAACTTGAACCT+TGG | + | chr2.4:13645106-13645125 | None:intergenic | 50.0% | |
| TGAAGCAGCTGCAACCACTA+AGG | + | chr2.4:13644997-13645016 | None:intergenic | 50.0% | |
| ! | CCAAGGTTCAAGTTTGGCTG+TGG | - | chr2.4:13645103-13645122 | MS.gene35690:CDS | 50.0% |
| AATCCGTGGACCAGCTGCAA+GGG | + | chr2.4:13644822-13644841 | None:intergenic | 55.0% | |
| !! | GGTGCCATTGGTGCTACTCT+TGG | - | chr2.4:13644047-13644066 | MS.gene35690:intron | 55.0% |
| ATCCGTGGACCAGCTGCAAG+GGG | + | chr2.4:13644821-13644840 | None:intergenic | 60.0% | |
| GAATCCGTGGACCAGCTGCA+AGG | + | chr2.4:13644823-13644842 | None:intergenic | 60.0% | |
| GTGGCAAATGGAGCAGCAGC+TGG | - | chr2.4:13644749-13644768 | MS.gene35690:intron | 60.0% | |
| GACCCCTTGCAGCTGGTCCA+CGG | - | chr2.4:13644816-13644835 | MS.gene35690:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 13643843 | 13645199 | 13643843 | ID=MS.gene35690 |
| chr2.4 | mRNA | 13643843 | 13645199 | 13643843 | ID=MS.gene35690.t1;Parent=MS.gene35690 |
| chr2.4 | exon | 13644877 | 13645199 | 13644877 | ID=MS.gene35690.t1.exon1;Parent=MS.gene35690.t1 |
| chr2.4 | CDS | 13644877 | 13645199 | 13644877 | ID=cds.MS.gene35690.t1;Parent=MS.gene35690.t1 |
| chr2.4 | exon | 13644180 | 13644303 | 13644180 | ID=MS.gene35690.t1.exon2;Parent=MS.gene35690.t1 |
| chr2.4 | CDS | 13644180 | 13644303 | 13644180 | ID=cds.MS.gene35690.t1;Parent=MS.gene35690.t1 |
| chr2.4 | exon | 13643843 | 13644058 | 13643843 | ID=MS.gene35690.t1.exon3;Parent=MS.gene35690.t1 |
| chr2.4 | CDS | 13643843 | 13644058 | 13643843 | ID=cds.MS.gene35690.t1;Parent=MS.gene35690.t1 |
| Gene Sequence |
| Protein sequence |
