AlfalfaGEDB | MS.gene055954

M. sativa cultivar XinJiangDaYe / MS.gene055954

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055954.t1	XP_013449653.1	98	392	8	0	1	392	1	392	2.60E-93	352.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055954.t1	A0A072U2P5	98.0	392	8	0	1	392	1	392	1.9e-93	352.4

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene055954	0.801114	1.05E-48	-1.69E-46
MS.gene050772	MS.gene055954	0.809274	2.05E-50	-1.69E-46
MS.gene052164	MS.gene055954	0.801904	7.23E-49	-1.69E-46
MS.gene053574	MS.gene055954	0.807857	4.12E-50	-1.69E-46
MS.gene055722	MS.gene055954	0.809342	1.98E-50	-1.69E-46
MS.gene055954	MS.gene061731	0.802459	5.55E-49	-1.69E-46
MS.gene055954	MS.gene062241	0.808708	2.71E-50	-1.69E-46
MS.gene055954	MS.gene062923	0.807132	5.87E-50	-1.69E-46
MS.gene055954	MS.gene06346	0.818369	2.03E-52	-1.69E-46
MS.gene055954	MS.gene064435	0.805673	1.19E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055954.t1	MTR_7g094010	97.449	392	10	0	1	392	1	392	0.0	775
MS.gene055954.t1	MTR_1g089280	73.262	374	99	1	19	392	26	398	0.0	565
MS.gene055954.t1	MTR_3g082120	45.220	387	192	11	21	392	25	406	2.31e-96	294
MS.gene055954.t1	MTR_7g023730	34.982	283	155	9	42	297	52	332	8.26e-39	142
MS.gene055954.t1	MTR_1g015530	31.988	347	217	8	6	343	9	345	1.45e-36	142
MS.gene055954.t1	MTR_1g015530	35.036	274	162	9	82	345	271	538	1.29e-25	109
MS.gene055954.t1	MTR_1g015530	30.876	217	144	3	82	296	343	555	4.70e-18	86.7
MS.gene055954.t1	MTR_1g015530	38.400	125	77	0	79	203	412	536	2.02e-17	84.7
MS.gene055954.t1	MTR_1g015530	32.609	322	200	7	31	343	3	316	1.91e-35	138
MS.gene055954.t1	MTR_1g015530	35.036	274	162	9	82	345	242	509	1.24e-25	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055954.t1	AT1G03440	70.284	387	112	2	6	392	13	396	0.0	559
MS.gene055954.t1	AT4G03010	67.595	395	124	2	1	392	1	394	0.0	539
MS.gene055954.t1	AT3G17640	40.955	398	214	11	5	392	4	390	9.52e-89	274
MS.gene055954.t1	AT3G59510	33.705	359	206	12	47	388	67	410	8.29e-48	168
MS.gene055954.t1	AT5G66330	30.905	398	234	13	25	391	26	413	5.33e-37	139
MS.gene055954.t1	AT2G26330	31.700	347	218	8	8	343	7	345	2.85e-36	141
MS.gene055954.t1	AT2G26330	35.531	273	162	8	82	345	271	538	5.48e-30	122
MS.gene055954.t1	AT2G26330	34.286	175	110	4	82	253	367	539	2.48e-17	84.7
MS.gene055954.t1	AT2G26330	35.433	127	82	0	79	205	412	538	2.67e-16	81.6
MS.gene055954.t1	AT2G15320	29.870	385	211	15	14	377	13	359	9.68e-36	135

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Find 99 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGAGAACTACTCAA+CGG	0.673282	7.4:-15129681	None:intergenic
AAAGCTACCGGGAACTTCAC+CGG	0.556348	7.4:-15129568	None:intergenic
AAAGTCATTGCACTCAGTCT+CGG	0.563443	7.4:+15128820	MS.gene055954:CDS
AACCGGTGAGACGGTTATGA+CGG	0.543763	7.4:-15129143	None:intergenic
AACCGTTCCACAAAGCTACC+GGG	0.582655	7.4:-15129579	None:intergenic
AACTCACCGGACCAGTGGAT+CGG	0.526612	7.4:+15129292	MS.gene055954:CDS
AAGAAACCAATTATACGGTC+CGG	0.546213	7.4:+15129425	MS.gene055954:CDS
AAGTCGGAATTTCATCTCCG+GGG	0.713195	7.4:+15128999	MS.gene055954:CDS
AATCGTGATTAATCCAACGG+CGG	0.754243	7.4:+15129653	MS.gene055954:CDS
ACTCACCGGACCAGTGGATC+GGG	0.496086	7.4:+15129293	MS.gene055954:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAGAGAACTACTCAA+CGG	-	chr7.4:15129684-15129703	None:intergenic	30.0%
TAGATTTAACTGTTTCACCA+GGG	+	chr7.4:15128914-15128933	MS.gene055954:CDS	30.0%
TTAGATCGAGATAGTTTAAC+CGG	-	chr7.4:15129335-15129354	None:intergenic	30.0%
TTCCAAATTCTTCTCATCAT+GGG	+	chr7.4:15128747-15128766	MS.gene055954:CDS	30.0%
TTGAAGAATCTCAAGTTTCT+CGG	+	chr7.4:15128973-15128992	MS.gene055954:CDS	30.0%
TTGTTTGCAGTATAATTGCA+TGG	+	chr7.4:15129698-15129717	MS.gene055954:CDS	30.0%
TTTGTTGAAGCTTAGATCAA+CGG	-	chr7.4:15129481-15129500	None:intergenic	30.0%
AAGAAACCAATTATACGGTC+CGG	+	chr7.4:15129425-15129444	MS.gene055954:CDS	35.0%
ATAAGTCGGAATTTCATCTC+CGG	+	chr7.4:15128997-15129016	MS.gene055954:CDS	35.0%
ATCTCGATCTAAGCTTAAAC+CGG	+	chr7.4:15129343-15129362	MS.gene055954:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	15128625	15129803	15128625	ID=MS.gene055954
chr7.4	mRNA	15128625	15129803	15128625	ID=MS.gene055954.t1;Parent=MS.gene055954
chr7.4	exon	15128625	15129803	15128625	ID=MS.gene055954.t1.exon1;Parent=MS.gene055954.t1
chr7.4	CDS	15128625	15129803	15128625	ID=cds.MS.gene055954.t1;Parent=MS.gene055954.t1

Gene Sequence

>MS.gene055954

ATGAAGATTTCCACATTTTTTATCATTCTTCTTTGTTTCTTTCAATCCACACGAGCAATCTTAGATCCTATTGATTTTTTAGCACTACAATCTATTCGAAGATCGCTTCATGATGTTCCTGGTTCCAAATTCTTCTCATCATGGGACTTCACTGCTGATCCCTGCAACTTCGCTGGCGTTTACTGTGCCGCTGATAAAGTCATTGCACTCAGTCTCGGAGAATCTCGAGCCGGTTCACCTGGCCTCACCGGAAAAATCGACATCGCCATCGGAAAACTCTCGTCTCTCGTAGATTTAACTGTTTCACCAGGGAGAATTTACGGTCATCTTCCTCAGTCCATTTCACAGTTGAAGAATCTCAAGTTTCTCGGTATAAGTCGGAATTTCATCTCCGGGGAGATTCCGGCAGGGCTCGGTCAGCTTCGTAATCTCAGAACTATTGATCTAAGTTACAACCAGCTCGCCGGAACTATTCCTCCGTCAATCGGAAAATTGCCAGAGCTAAAAAACCTGATTCTCCGTCATAACCGTCTCACCGGTTCAGTTCCATCATTCGCATCAGCTCGAAACCTAAACCGGCTTGATCTAAAGCATAACACACTCACCGGTTCACTTGCTCCTGATTCTCTCCCATCTTCACTACAATACCTCACTCTCTCGTGGAACCAACTCACCGGACCAGTGGATCGGGTTTTATACCGTTTAAACCGGTTAAACTATCTCGATCTAAGCTTAAACCGGTTCACCGGTTCAATCCCGGCTCAACTATTCTCATTCCCTTTAACAAATCTACAATTAGAAAGAAACCAATTATACGGTCCGGTTGAACCGTTCAACGAAGTTACAATCCAAACCGTTGATCTAAGCTTCAACAAATTTTCAGGTAATATTTCACCTTTATTAGCATCGGTGCAAAATTTGTATCTAAACAACAACGCTTTCACCGGTGAAGTTCCCGGTAGCTTTGTGGAACGGTTATTAGCGGCGCATATTCAAATATTATATTTGCAGCATAATTATCTCACCGGAATCGTGATTAATCCAACGGCGGAGATTCCGTTGAGTAGTTCTCTTTGTTTGCAGTATAATTGCATGGTTCCTCCTGTTCAGATGACGTGTCCTTCCAAAGCAGGTTACCAGAAAATCAGACCTGCTAAGGAGTGTAACAAATACCATTGA

Protein sequence

>MS.gene055954.t1

MKISTFFIILLCFFQSTRAILDPIDFLALQSIRRSLHDVPGSKFFSSWDFTADPCNFAGVYCAADKVIALSLGESRAGSPGLTGKIDIAIGKLSSLVDLTVSPGRIYGHLPQSISQLKNLKFLGISRNFISGEIPAGLGQLRNLRTIDLSYNQLAGTIPPSIGKLPELKNLILRHNRLTGSVPSFASARNLNRLDLKHNTLTGSLAPDSLPSSLQYLTLSWNQLTGPVDRVLYRLNRLNYLDLSLNRFTGSIPAQLFSFPLTNLQLERNQLYGPVEPFNEVTIQTVDLSFNKFSGNISPLLASVQNLYLNNNAFTGEVPGSFVERLLAAHIQILYLQHNYLTGIVINPTAEIPLSSSLCLQYNCMVPPVQMTCPSKAGYQKIRPAKECNKYH