AlfalfaGEDB | MS.gene25476

M. sativa cultivar XinJiangDaYe / MS.gene25476

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25476.t1	XP_003628361.1	93.2	472	30	1	1	470	15	486	8.40E-243	849.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25476.t1	Q9SWI1	36.2	473	179	22	12	443	21	411	8.4e-42	172.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25476.t1	G7LA55	93.2	472	30	1	1	470	15	486	6.1e-243	849.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene25476	0.826579	2.51E-54	-1.69E-46
MS.gene049171	MS.gene25476	0.846266	2.42E-59	-1.69E-46
MS.gene049173	MS.gene25476	0.833548	5.01E-56	-1.69E-46
MS.gene049217	MS.gene25476	0.818676	1.73E-52	-1.69E-46
MS.gene049222	MS.gene25476	0.851121	1.09E-60	-1.69E-46
MS.gene049232	MS.gene25476	0.839201	1.83E-57	-1.69E-46
MS.gene049285	MS.gene25476	0.848457	6.06E-60	-1.69E-46
MS.gene049320	MS.gene25476	0.847945	8.38E-60	-1.69E-46
MS.gene049396	MS.gene25476	0.81823	2.18E-52	-1.69E-46
MS.gene049552	MS.gene25476	0.807293	5.43E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25476.t1	MTR_8g055860	96.610	472	14	1	1	470	15	486	0.0	942
MS.gene25476.t1	MTR_5g040340	47.327	505	178	22	3	470	7	460	1.41e-108	330
MS.gene25476.t1	MTR_7g088200	28.358	335	194	11	98	407	129	442	1.16e-14	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25476.t1	AT2G02950	37.360	447	160	21	34	443	48	411	2.16e-50	178
MS.gene25476.t1	AT1G14280	33.182	440	142	22	61	444	74	417	7.36e-36	138

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Find 84 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCATGGACAACAACA+TGG	0.618653	8.3:-43004547	MS.gene25476:CDS
AAACAATACTAATTCTCAAG+TGG	0.581231	8.3:-43004602	MS.gene25476:CDS
AAACTCCCCTCTTCATCAAG+TGG	0.542981	8.3:-43005742	MS.gene25476:CDS
AAAGTACCTTCCTCAGAGAA+AGG	0.512613	8.3:-43005640	MS.gene25476:CDS
AAATATCAACCTCTTATCAT+TGG	0.420551	8.3:+43005059	None:intergenic
AAATGTCTGAGTTTACAATA+AGG	0.441417	8.3:-43004792	MS.gene25476:CDS
AACATGCCAGGCCGCCGCCT+CGG	0.461235	8.3:+43004724	None:intergenic
AAGCAAGAGAAGTTAAGGGT+AGG	0.593464	8.3:-43005237	MS.gene25476:CDS
AAGCAATGAAAAGAATAGTT+TGG	0.330151	8.3:-43005211	MS.gene25476:CDS
AAGGACACCATTGAAACCAA+AGG	0.662052	8.3:-43004761	MS.gene25476:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTATGGTTCAAAAAGGCA+TGG	-	chr8.3:43005574-43005593	MS.gene25476:CDS	30.0%
CCATACTTGAATATGAAAGA+AGG	-	chr8.3:43004308-43004327	MS.gene25476:intron	30.0%
CCTTCTTTCATATTCAAGTA+TGG	+	chr8.3:43004311-43004330	None:intergenic	30.0%
GCTATGTAATACAAACACTT+CGG	-	chr8.3:43005682-43005701	MS.gene25476:CDS	30.0%
GCTGAAAAATACTTCAATAG+AGG	-	chr8.3:43004443-43004462	MS.gene25476:intron	30.0%
TCAAAAGCAAGAGAAGTTAA+GGG	-	chr8.3:43004892-43004911	MS.gene25476:CDS	30.0%
TGATAAAGGGATTGATTGTT+TGG	+	chr8.3:43004364-43004383	None:intergenic	30.0%
TTACAATAAGGAGTCCAATA+AGG	-	chr8.3:43005353-43005372	MS.gene25476:CDS	30.0%
TTCAAAAGCAAGAGAAGTTA+AGG	-	chr8.3:43004891-43004910	MS.gene25476:CDS	30.0%
AAATGTAACCACATGTGTCT+CGG	+	chr8.3:43005739-43005758	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	43004245	43005910	43004245	ID=MS.gene25476
chr8.3	mRNA	43004245	43005910	43004245	ID=MS.gene25476.t1;Parent=MS.gene25476
chr8.3	exon	43004499	43005910	43004499	ID=MS.gene25476.t1.exon1;Parent=MS.gene25476.t1
chr8.3	CDS	43004499	43005910	43004499	ID=cds.MS.gene25476.t1;Parent=MS.gene25476.t1
chr8.3	exon	43004245	43004278	43004245	ID=MS.gene25476.t1.exon2;Parent=MS.gene25476.t1
chr8.3	CDS	43004245	43004278	43004245	ID=cds.MS.gene25476.t1;Parent=MS.gene25476.t1

Gene Sequence

>MS.gene25476

ATGCAAACTTTCAACACTGAAAACAGTAACAATAACAACCACCTCCATGATGCTGTTTTCTCTCCATACTTGAATATGAAAGAAGGAAAGTTTATAGCAAAAATTGGTGAATCAAGCCAAACAATCAATCCCTTTATCAACCATAGAAACTCCCCTCTTCATCAAGTGGAAAAGGCAGAAGAAATTGGAGTATTTGGAGCTGAAAAATACTTCAATAGAGGAGAAGTTGATACTCCAAGACCTTCTACAAAGTACCTTCCTCAGAGAAAGGAAACAATGGCTATAGAAACTAGAAAGTACCAAGTTGAGTATGGAACTCCAAGTATTAGTTCTGTGTCAACATGGAACAGCCAAAATGCACTCTTAAAGAGTGGAGTGAGAAATTCTATAGGGAATGGCAAAGAAAAAGAGCATGGTAAGAGTGTTCTATCGAGTCTTCGTCTCAAATGCTCTTGTTCTGATAAGAATTCTGTTGATATCAATGACCATGCAAGTGAAATCAGTTTTAATAACAAAACTTCTAAGTATGGTGCAGTTCAAGGTAAAACAACGCCGAAAAAAGTGTTCAATCTTGGTCTTGATGATGATCTTTCAGTCAGAATAAGAAAGCCTAGCTCAGAAATCTTACTCAACAAAGATGTTTACTTTCAAAAGCAAGAGAAGTTAAGGGTAGGATTAAGCAATGAAAAGAATAGTTTGGCTTCTAACTCAAGAAATCATCTTGCTCAAATGCAAAATCCATTAGATGATGAAAAGACACCTAGAAAATCACTTGAAGTATTTGGATCACCAAATCCAATATTGATCAATAACAAAAGAAGTTCATTGACCAATGATAAGAGGTTGATATTTCCAAAAATGGAAGAAATTGATAATGCAAACTATGGTGATGATGATGCTGCAAGTGATGCAAGTTCAGATTTGTTTGAGATTGAGAGTCTCAAAGGAAAACCCTCCAACAACAATTTTCTTACTAGACAGACATCAGATGCTGCTTCAAGTTGCCTTAGCCCGAATTGTTACGCGCCGAGTGAGGCAAGCATAGAATGGAGTGTGGTGACTGCAAGTGCTGCAGTTATGTCAGATTGTGAAGATCAAATGTCTGAGTTTACAATAAGGAGTCCAATAAGGACACCATTGAAACCAAAGGTCGCTAAAGAGACACCGAGGCGGCGGCCTGGCATGTTGTTGGGATGCAAGAGCCACAAAGCTGTTAGAGTTTCTGGTGATGCATTTATAACTTATGAGAAACAAAGTTTAAGTCCAAAAATTAGTAGCAGAAACAAAAACAATACTAATTCTCAAGTGGCAAGGTTTCCAGGAGAGACAAATTATGGTTCAAAAAGGCATGGACAACAACATGGTTATACCACACCACCATTGCAGGCCTCTAACTCGCCACATGCTTCAAAGTTACTATACATTTAGCAATAGTTTGCTATGTAATACAAACACTTCGGATTTGAAGGTGTGACTATTAGTGTCTGGTATCCGAGACACATGTGGTTACATTTAATAATGTTCTTTTATCAAATGTGTTAGTGTCGTGTCTGGTGTATGTGTCAGTGCTTCATAGAAATTTTAGACTTTTTTTTTGTTGTTTTGGAATATCTGCATTATGAATTAGTATAGTGCAAAAGGCAAAGAGGTATGGCTTCAAAAGTAA

Protein sequence

>MS.gene25476.t1

MQTFNTENSNNNNHLHDAVFSPYLNMKEGKFIAKIGESSQTINPFINHRNSPLHQVEKAEEIGVFGAEKYFNRGEVDTPRPSTKYLPQRKETMAIETRKYQVEYGTPSISSVSTWNSQNALLKSGVRNSIGNGKEKEHGKSVLSSLRLKCSCSDKNSVDINDHASEISFNNKTSKYGAVQGKTTPKKVFNLGLDDDLSVRIRKPSSEILLNKDVYFQKQEKLRVGLSNEKNSLASNSRNHLAQMQNPLDDEKTPRKSLEVFGSPNPILINNKRSSLTNDKRLIFPKMEEIDNANYGDDDAASDASSDLFEIESLKGKPSNNNFLTRQTSDAASSCLSPNCYAPSEASIEWSVVTASAAVMSDCEDQMSEFTIRSPIRTPLKPKVAKETPRRRPGMLLGCKSHKAVRVSGDAFITYEKQSLSPKISSRNKNNTNSQVARFPGETNYGSKRHGQQHGYTTPPLQASNSPHASNAKGKEVWLQK