AlfalfaGEDB | MS.gene79879

M. sativa cultivar XinJiangDaYe / MS.gene79879

KEGG: -
GO: -
PFAM: PF00581.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79879.t1	AES71907.2	91	620	56	0	1	620	759	1378	1.60E-291	1011.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79879.t1	Q9FN48	31.2	138	91	2	333	467	212	348	1.3e-13	79.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79879.t1	A0A072V1I7	91.0	620	56	0	1	620	341	960	1.2e-291	1011.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene79879	0.861115	1.29E-63	-1.69E-46
MS.gene049171	MS.gene79879	0.940123	3.99E-100	-1.69E-46
MS.gene049173	MS.gene79879	0.886829	2.43E-72	-1.69E-46
MS.gene049217	MS.gene79879	0.911101	8.90E-83	-1.69E-46
MS.gene049222	MS.gene79879	0.946127	8.34E-105	-1.69E-46
MS.gene049232	MS.gene79879	0.889316	2.70E-73	-1.69E-46
MS.gene049281	MS.gene79879	-0.806632	7.49E-50	-1.69E-46
MS.gene049285	MS.gene79879	0.957024	7.34E-115	-1.69E-46
MS.gene049312	MS.gene79879	-0.800273	1.56E-48	-1.69E-46
MS.gene049320	MS.gene79879	0.943113	2.16E-102	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79879.t1	MTR_3g084030	95.161	620	30	0	1	620	731	1350	0.0	1199
MS.gene79879.t1	MTR_3g084030	95.161	620	30	0	1	620	759	1378	0.0	1197
MS.gene79879.t1	MTR_3g084030	95.161	620	30	0	1	620	341	960	0.0	1197
MS.gene79879.t1	MTR_3g084030	95.161	620	30	0	1	620	711	1330	0.0	1196
MS.gene79879.t1	MTR_4g112530	29.012	162	102	3	318	467	189	349	1.51e-16	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79879.t1	AT3G59780	47.737	685	285	10	3	620	1	679	0.0	589
MS.gene79879.t1	AT5G23060	29.268	164	104	3	315	467	186	348	2.02e-16	82.0

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Find 160 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGTCTCCGCATCA+AGG	0.573040	3.1:+65589446	MS.gene79879:CDS
AAAACAACAAATGGAATAAT+TGG	0.124067	3.1:-65586998	None:intergenic
AAAATATACATACCAGACTG+AGG	0.706311	3.1:-65590927	None:intergenic
AAACAACAAATGGAATAATT+GGG	0.465553	3.1:-65586997	None:intergenic
AAACTGTGGATTCAGGAGTC+GGG	0.550317	3.1:-65591966	None:intergenic
AAATGCTCTTCGAAGCTCAG+TGG	0.649547	3.1:+65586272	MS.gene79879:CDS
AAATTGGAATCAAATGGCAT+AGG	0.545577	3.1:+65591844	MS.gene79879:CDS
AACACATCAATAACCAAACC+AGG	0.577171	3.1:-65586456	None:intergenic
AACCAAACCAGGCGCTTTGC+TGG	0.356592	3.1:-65586445	None:intergenic
AAGAGCTCGAAAGCTGATTT+AGG	0.196673	3.1:-65587199	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATACATACCAGACTG+AGG	-	chr3.1:65590930-65590949	None:intergenic	30.0%
AAATTGGAATCAAATGGCAT+AGG	+	chr3.1:65591844-65591863	MS.gene79879:CDS	30.0%
AAGATCCTTGAAGAAAATTG+GGG	+	chr3.1:65588414-65588433	MS.gene79879:CDS	30.0%
AAGCACATACTATGGTTTAA+AGG	-	chr3.1:65589144-65589163	None:intergenic	30.0%
AATAGATGTCAGATATATGC+AGG	+	chr3.1:65587128-65587147	MS.gene79879:intron	30.0%
AATCATTATTGTTGCAGAGT+GGG	+	chr3.1:65590873-65590892	MS.gene79879:intron	30.0%
AATGGAATAATTGGGTCATT+TGG	-	chr3.1:65586992-65587011	None:intergenic	30.0%
AATGGTTAACAATAAAGTGG+GGG	-	chr3.1:65590820-65590839	None:intergenic	30.0%
AATGTTACTGACCTTAAAAC+TGG	-	chr3.1:65591076-65591095	None:intergenic	30.0%
AATTGGAATCAAATGGCATA+GGG	+	chr3.1:65591845-65591864	MS.gene79879:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	65585677	65591999	65585677	ID=MS.gene79879
chr3.1	mRNA	65585677	65591999	65585677	ID=MS.gene79879.t1;Parent=MS.gene79879
chr3.1	exon	65585677	65585730	65585677	ID=MS.gene79879.t1.exon1;Parent=MS.gene79879.t1
chr3.1	CDS	65585677	65585730	65585677	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65585826	65586650	65585826	ID=MS.gene79879.t1.exon2;Parent=MS.gene79879.t1
chr3.1	CDS	65585826	65586650	65585826	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65586944	65587044	65586944	ID=MS.gene79879.t1.exon3;Parent=MS.gene79879.t1
chr3.1	CDS	65586944	65587044	65586944	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65587150	65587264	65587150	ID=MS.gene79879.t1.exon4;Parent=MS.gene79879.t1
chr3.1	CDS	65587150	65587264	65587150	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65587521	65587598	65587521	ID=MS.gene79879.t1.exon5;Parent=MS.gene79879.t1
chr3.1	CDS	65587521	65587598	65587521	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65587764	65587856	65587764	ID=MS.gene79879.t1.exon6;Parent=MS.gene79879.t1
chr3.1	CDS	65587764	65587856	65587764	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65588358	65588441	65588358	ID=MS.gene79879.t1.exon7;Parent=MS.gene79879.t1
chr3.1	CDS	65588358	65588441	65588358	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65589408	65589506	65589408	ID=MS.gene79879.t1.exon8;Parent=MS.gene79879.t1
chr3.1	CDS	65589408	65589506	65589408	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65590023	65590085	65590023	ID=MS.gene79879.t1.exon9;Parent=MS.gene79879.t1
chr3.1	CDS	65590023	65590085	65590023	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65590466	65590496	65590466	ID=MS.gene79879.t1.exon10;Parent=MS.gene79879.t1
chr3.1	CDS	65590466	65590496	65590466	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65590890	65590936	65590890	ID=MS.gene79879.t1.exon11;Parent=MS.gene79879.t1
chr3.1	CDS	65590890	65590936	65590890	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65591140	65591198	65591140	ID=MS.gene79879.t1.exon12;Parent=MS.gene79879.t1
chr3.1	CDS	65591140	65591198	65591140	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1
chr3.1	exon	65591786	65591999	65591786	ID=MS.gene79879.t1.exon13;Parent=MS.gene79879.t1
chr3.1	CDS	65591786	65591999	65591786	ID=cds.MS.gene79879.t1;Parent=MS.gene79879.t1

Gene Sequence

>MS.gene79879

ATGAAAATGTTGCCTTTTTGCTCAGCCACACCGTGTTATTCCCCTTCTTCTCAGGTCTATTTCTATCCATTCAACTTTTATCATGTTTATCACTATTTGAAACTCGGTAGGACCAATCACTTATAACAGTTAATCTTTTGTTATTGCAGATTCCCTTATTTGGGGGACTTCAATCTCTATGTCCAATTCGAAAGGATTTTGAGAGTAGAGGCGTGGTAGAAGAAAATGTACATTTAGGTTTGCATTATGGAACACCCTCACTCAGAACTTCATTTACAACACAAGCTATAAACACTGTCTCAGTTTGGGAAAATTCACCACTTAGTGCTGGAGAATTCAGATATAGTTTATCTACCGCGCCCGAGGAATTAGTAGACTTTGCAAAACAATCAACTGAAGGGTCTGATGCATTAGTAGCACCTGCTGTGCAACCAGAAGCAATATTATCAAGTACTGATACAACGTCGGGGAAGTTTGAATCTGTGTCGAATTTGGTTGAAGGGGGTAATGAATCATTAGCAGCAACTAAAGCAAGTGCCACTGAAGTTTTTGCTGGAATCAATGAGACATTCAGCGACTCAATTAATAAGGGAGAAAATGCTCTTCGAAGCTCAGTGGATTCGGCAACTTCTTTTATTGATTCCGTTGTTAAAAATGCTACTACGTCTGCAGATAATGCTTTTAGTAAGGTGTTTTCTGCTGCTGATCAAACGGGGGAGTTAGCGAATAAGAAAATTACTAGCTTTTCAAGTGAAATAGATGGAGTCACCAGCAAAGCGCCTGGTTTGGTTATTGATGTGTTGCGCCGTACAGTGGTTGCAGTTGAGAGTTCTCTGTCAAGTGGGGCTTCTTATGTTGTTTACCTATATGGGTCGGCGAAGGAGTTTCTTCCTGCAGAGATCAGGGATACAGTCAATATATATGAAGATAAAGCAGCACAAGTCTTGAGGCCTGTTGGGTCTGCAACTCAACAGGTAACATATTCATAGAGATTCAACAGGATTCTAAGTCTTAGCTTCCCTAAAAAATTTCATTTTGTTTAATGTCGTGAAGTTTGATTTGAATTGTCAAATGAGTCAAAACGTCTTATATATGGACGACTCTTCTTCAGCTCTAGCATAAGAAGTTCGTTGCTTTAATTCATGCTTGAAATTGTGCGTTCTTGTTCTTAATATATGCTGTTTCATTTCACAAACATTATGAATTTGCCAGCAATTTTCTAGCCTGTTCACAAATCGTATGTTGATAATTTATGTCTAATAAGCAGATATACATGGCTTTCTATTCACTGGAGAAGAGTCTTGGCTTGGATCCAAATGACCCAATTATTCCATTTGTTGTTTTTGTGGGCTCTTCAGCAACATTATGGTATGAAATTATCTTTCCTCAAAAGTAAAATTTGTTATAAATCTACATTGAAGAATTAGATTTTCATCACAAACACCATCTATAATAGATGTCAGATATATGCAGGACTATTTATTGGTTGTGGAAATATGGAGGTTACTCGGGAGATTTATCCCCTAAATCAGCTTTCGAGCTCTTGGCCGGGGACTCAAATGCTGTACTTATAGATGTCCGCTCCGAGGCAAGTTATGGTCAATTTTTGAGGCATTTTTAATTCAAAGCGGGAGAAACAGTCATACATTTTATGAAAGCAAAGTCAGGATATCTTGTGTTTTGAATCTTTTGATGCCCATTCTATGTTTGTTCCACTCTTTTTCTAATCTCAAACTATGATACTTTGGTGGAATGGAAGTTTTCCTATCTGTTTGCATTTGTTTGGCCAACTATTTTCATATCAATGTTGATCAATGAAGTTGCTGCTCCTTTCCTTTATGCAGGACTTGCGAGAAAAAGATGGTATTCCTGATATTCGACGGGCTGCTCGGTTTCGCTATGCGAGTGTAACTCCAATTGAGGTTGGTTTAAAACATGATGATATTTAAAAATTGTGGCGAGTATATTTATGGAATGCCTTACCTATGTGAAATGGAACAGGTCCAGAATCTTGGTCATTTATTCTATGGATAAGTAATTAATTTGTTATCTAGCACTACTAAAATAACATATCATGTCCATTTCAGGTTGATGGCTCCATACGCAAGTTGTTGAAGGGTGGTAGAGACCTAGATGACTCCTTGATCGCTGCTATTATTCAAAATTTGAAAATTGTTAAGGTATTTTGCCTTGCATCTCGAAACAGGGTCTATTGTTCTGAATAAAGTTAGTTGGAAGTGTATGGAATAACCCCTAGACGCTTGGCAAAATTTTCTTCCATATGAAACTCTCGGATATCAATGTTTTATACACAACCTTCAGTTTCATTCTTTTTACTTTGATATTATAACAATAGGCAATTGAACGTCAAAAGATATCTGTGTGTTAAAGTTAGGTTGTTTTTATAAAACATGTAGTCTTTTTGTAGTTTCGTCATTTTATGTTTATTTTTTGGAGGACATTAGATGGAGTTATATAGTGACTGTGTACTTTGTACCCTGCATGATAGGTGTAGGTCTGTTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATATATATATATATATTCAACGACTAGAAGTTCGCCTAAGAATACCTTTTTATTTTCACCTAATAATCTATCAGAAACTTAATTTATGTGGTCTATAGGACAGTTCCAAGGTTATTGTGTTGGATGCTGATGGTACTCGTTCTAAAGGCATTGCAAGATCCTTGAAGAAAATTGGGGTTAAGGTAAGTCTGTCAATAACTGCTGAGATACTTGCTGCAAATCTTTAATGTGTTGGCGATATATAACATAAATTTACTGCTGCAATCCATTATGTAAATTATCTAACCTGCCATCTGTCCTACTATTTATTCGTTCATCTAAATTCCTTCCAAACCTTATTTTGTTGCTGAAGCCTGTGCCTAACAGAATGTATAGCTTTGTGGTAGGAGATTTGGTATCTAGATAACAAATAACAGTTTTTCCTGCTTCTATATCTGATATAGGATCATTGAAACTTGTAATTGTATTTCAAGGTTAGGGTTGAAGAGCCGTGGCATGGTGAAAAGTAGGATAATCTATTAATAATAGAGAAAAATTCTGGATTATTCTATATAACTCAAATCTTTGTTAGTGTCTGCATGATTTCCTACAAAGAAGTATCTCTATCATATTATCTAATAGTATTGCGCATGTTCACCTCAGTTATGAGTGTAAACTGAACTCATGCACAAATGCTAATACATGGTGAGTTGCAGTACATAACAGCCCATCACTAGATGAGACACTCTGATGGTTTAGATTTGAAATTGTAAATGAAAAAGGCAAAAACTAGAATTTATGAATTTTAGATTCCCTAACTCATATATGTTCAAACTAAACACTTAGTCCTTTACTGTCAACATAAATGCTAATCAGATTTGTTTTCAAACTTGGGGACAGTTCCTTTAAACCATAGTATGTGCTTTAGTGGTGATTCACTAATAGACGCCCTATACTGACCCACTTGGGTTGGCCTGTTGGTGTTGGCTTGGGACCTTGGAGTGTGCTTCTCTCAAGGTTCAGGTTCGATTCTCGCAGGTGTCAATTTGGGCGGGCTAGTTTGGCTTATTAAAAAAAAAAACTAATAGACGCCCTATGCACAATCAACTTATTCATCATTCATTGAAATCCGATCCATATATGTAACTAGTCATGTTGATATTTTACAGAATCCGTACTTGGTCGAAGGTGGCTTTCAGTCTTGGGTAAAACAAAGTCTCCGCATCAAGGAACTCAAACCTGAAACAGCACTTACCATACTCAATGAGGTATTTGTCAAACTATTTTTGCTCATACATATTGTTATGGATATGAATTTCACTAGGCACTAGCATACATAACCAAAAATAATAGGATGAAAGCTCGGTTCTGTAATACTAACAATTTAGGATGAATCCTCTTCTTACCCAGCCTACTGTTTTAGCTAATCACCTAATCAATTCTTTATTTTTAATGCATGCAAAAGATATTAAGGATAACCTAATTTGACTAAGGGTCCTTCTGTTTTTTTATACAAAAGCCAATTTTTATTCAAAAGATATGTTTTATAAAACTTGTAGTAGCTAATAAGTTTCTTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATTCTCATGAAAAGCTATTTCAATGCTTTTCTTAGAGGTTCAAATTAGCAGCTTCAGAAAAAAAATGGCTCTAAAAAAAGTTGCATTGTGGGATCACTTTTTTTAAAGCTTAAGAAAATAAATATATGTTGGTCTTTTCATCAGTGCATATGCATTTTTGTATGTTCACAGGAAGCTGAAGCAATTCTAGAGGATATTAGACCTTCTCCTTGGCAATTTTTAGGTTTTGGTACGGTAAGTGTCAACTTCGTAATTTTTACAACCAGTCAGTTATTTGTCATTTTTGTTGGATTCTCTGTATGCTTATCGTTAAGTTAATTTAATGAGGTTCACGTTATTTCATAACAAAGTATGGAGAATACCTCAATACAGTAGAAAACAGGTTTTTAGTCAAGCAACTTATATTGAGAAAAATAAAATAGAAAAATGGAATTGATAGCACTTTCTATCTATTTAATTTATCCTATCTTCAACAATTTTCTTTCGTAAATATGACGTTTTCTTCCTTGATACCACGAAAGCATCCTTGTCATATTTTGATTTGATAAGAAATGCTTACATGATTTTATTTGATTGTTATTATCTGCTAATAAATGCAACTACTTTTTATTCAGGCACTACTTGCGGGGTCATATGCATTAGTAGGTATGTGCATGTTCTTTCCCATAAACTAAGAATTTATTCAGAATTGAATTTTTTTGGACTACATCTAAAGAGTGTAGCAGTTAGTCCGGGGTCGTGAGACTTTGTCCCTTTAGTATGTTCCTCTGCAAGCATATAACTAACTACAAATGCCAGTTTATATGTGAAGTTGGCTAGTTTACTTCTCACAAATGTTTTAAGAGCTTATATCGTGTTTGAAATTTTATTTTGATTCTGTAGCTTAAATGAAAGTTCTAATTCCTTGTAACATCATGCACAAGTGACTGGAAGTCTTCAAATTTTTTATAGTGAAAACCTGGTTTCCCCCACTTTATTGTTAACCATTCGTTTATTTGATTGTCCTGATCTGACAAAGCGCAATCATTATTGTTGCAGAGTGGGAGAAAACATTGCAGTTAATTGGTGTATTTGGCCTCAGTCTGGTATGTATATTTTCCATTCGGCAAGTGCTTCAATTAAATACTGTTTCTTTAAAAGAATATGGTTCATATATCAACTAATGTTGGGAATAGCATAACGGGCCCATAATTTTATCTACTGGGAAATTCTCATATTTATCCAGTTTTAAGGTCAGTAACATTGGAGATTTTTCATTTCCTTATATTTTTTGAATGTGCATCACCAGACCATATATCTGCGGGTTTCTTCGTATGAAAGGTCAGAAGATTTGAACCAAGATGTGAGGTGAGTATACTTCATGATGGATATTTGGTCATATAGTCATCAAATTAGACAATGTTTGAATAATTTAATTATCATCCCATAGTCATGTATGTATTCAGTCATCTTAATATAAGTCATGGTAGATGTACACAAGCTTTTCATTTCTATGTTGTGAACTATTGGCTATATAGCAGTATGGATTGTGTTCATTAAATTTGTCATTGCATATACATAAAAGTCAGCATTTCAAACGTGTAAAAGGATCAGAAATTGTGTTTGTGTGCCTCGATAGACAGATATGAGCAAACATAAAGAGTGTCGCCCAAATCCACATGCAGTTTCCATTTTAGACTTCATGTAGCTAAACGAACTATTTTTTCCCTAATACAAGATAAACTAACTCTTAAGGCATAACTTTTGTTATCTTGTATTTTCTTCTTGAGTGTTACAAATATTGTAACATATCAACACCTAGAAAAACACATGTTTTCAATTAGCAAATAGCAACTAGTGAACTAACACTACCAGCTTGTGTACCCTATCTTGGCATTTTTACTCTAGCATCTGTAATGAAATTTAACTTGTTTGTCTTCTTCTGTCCTGTAAAGGTTTTTGTTGCTTGCTCCTGTTAAAATTGGAGGTCAGGCATTTTCATGGGCTGCTGGAAAATTGGAATCAAATGGCATAGGGTTACCTACATCACCTTCATCATTGGATGTTCAGAACCGGGTACTACAGGCTGCTGCCAAACATGAATCCCAACCATCTGATAGTGAAGGGAGCCAAGACCCGACTCCTGAATCCACAGTTTCTCTCAATTAA

Protein sequence

>MS.gene79879.t1

MKMLPFCSATPCYSPSSQIPLFGGLQSLCPIRKDFESRGVVEENVHLGLHYGTPSLRTSFTTQAINTVSVWENSPLSAGEFRYSLSTAPEELVDFAKQSTEGSDALVAPAVQPEAILSSTDTTSGKFESVSNLVEGGNESLAATKASATEVFAGINETFSDSINKGENALRSSVDSATSFIDSVVKNATTSADNAFSKVFSAADQTGELANKKITSFSSEIDGVTSKAPGLVIDVLRRTVVAVESSLSSGASYVVYLYGSAKEFLPAEIRDTVNIYEDKAAQVLRPVGSATQQIYMAFYSLEKSLGLDPNDPIIPFVVFVGSSATLWTIYWLWKYGGYSGDLSPKSAFELLAGDSNAVLIDVRSEDLREKDGIPDIRRAARFRYASVTPIEVDGSIRKLLKGGRDLDDSLIAAIIQNLKIVKDSSKVIVLDADGTRSKGIARSLKKIGVKNPYLVEGGFQSWVKQSLRIKELKPETALTILNEEAEAILEDIRPSPWQFLGFGTALLAGSYALVEWEKTLQLIGVFGLSLTIYLRVSSYERSEDLNQDVRFLLLAPVKIGGQAFSWAAGKLESNGIGLPTSPSSLDVQNRVLQAAAKHESQPSDSEGSQDPTPESTVSLN