AlfalfaGEDB | MS.gene064435

M. sativa cultivar XinJiangDaYe / MS.gene064435

KEGG: K05298
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0006006 GO:0008150 GO:0008152 GO:0016491 GO:0016620 GO:0016903 GO:0019318 GO:0036094 GO:0044238 GO:0044281 GO:0048037 GO:0050661 GO:0050662 GO:0051287 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363
PFAM: PF00044.27 PF02800.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064435.t1	XP_003603851.1	99.1	451	4	0	1	451	1	451	1.60E-251	878.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064435.t1	P12859	94.0	451	27	0	1	451	1	451	6.1e-244	844.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064435.t1	G7J5Y4	99.1	451	4	0	1	451	1	451	1.1e-251	878.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene064435	0.819959	8.83E-53	-1.69E-46
MS.gene049171	MS.gene064435	0.933059	3.34E-95	-1.69E-46
MS.gene049173	MS.gene064435	0.860685	1.74E-63	-1.69E-46
MS.gene049217	MS.gene064435	0.888	8.70E-73	-1.69E-46
MS.gene049222	MS.gene064435	0.928259	3.72E-92	-1.69E-46
MS.gene049232	MS.gene064435	0.9359	4.09E-97	-1.69E-46
MS.gene049281	MS.gene064435	-0.810092	1.37E-50	-1.69E-46
MS.gene049285	MS.gene064435	0.961687	5.43E-120	-1.69E-46
MS.gene049312	MS.gene064435	-0.812084	5.06E-51	-1.69E-46
MS.gene049320	MS.gene064435	0.960053	3.99E-118	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene024334	MS.gene064435	PPI
MS.gene024753	MS.gene064435	PPI
MS.gene027071	MS.gene064435	PPI
MS.gene027072	MS.gene064435	PPI
MS.gene027073	MS.gene064435	PPI
MS.gene027074	MS.gene064435	PPI
MS.gene027075	MS.gene064435	PPI
MS.gene050456	MS.gene064435	PPI
MS.gene050457	MS.gene064435	PPI
MS.gene058128	MS.gene064435	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064435.t1	MTR_3g115920	99.113	451	4	0	1	451	1	451	0.0	915
MS.gene064435.t1	MTR_3g115920	100.000	407	0	0	1	407	1	407	0.0	828
MS.gene064435.t1	MTR_3g115920	98.738	317	4	0	135	451	1	317	0.0	641
MS.gene064435.t1	MTR_7g084800	74.742	388	90	5	38	422	21	403	0.0	528
MS.gene064435.t1	MTR_2g065470	51.045	335	156	6	82	414	20	348	2.69e-108	325
MS.gene064435.t1	MTR_2g065470	45.346	419	212	10	1	414	1	407	3.91e-108	326
MS.gene064435.t1	MTR_2g065470	44.903	412	210	10	1	407	1	400	2.11e-104	316
MS.gene064435.t1	MTR_4g103920	48.680	341	166	7	84	421	4	338	1.04e-100	305
MS.gene064435.t1	MTR_3g085850	47.447	333	166	7	85	414	6	332	2.26e-100	303
MS.gene064435.t1	MTR_6g022630	46.951	328	165	7	83	407	1	322	1.30e-95	291

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064435.t1	AT1G42970	84.989	453	60	3	1	451	1	447	0.0	768
MS.gene064435.t1	AT1G12900	75.325	385	92	3	38	422	59	440	0.0	543
MS.gene064435.t1	AT1G12900	75.325	385	92	3	38	422	17	398	0.0	542
MS.gene064435.t1	AT3G26650	75.969	387	85	6	39	422	14	395	0.0	534
MS.gene064435.t1	AT1G12900	81.395	344	61	3	79	422	9	349	0.0	523
MS.gene064435.t1	AT1G12900	81.395	344	61	3	79	422	9	349	0.0	523
MS.gene064435.t1	AT1G12900	85.600	250	33	3	173	422	70	316	7.78e-134	388
MS.gene064435.t1	AT1G79530	51.603	343	158	6	79	419	80	416	1.38e-111	335
MS.gene064435.t1	AT1G16300	44.988	409	202	9	28	419	12	414	3.36e-108	327
MS.gene064435.t1	AT3G04120	48.348	333	163	7	85	414	5	331	1.20e-100	304

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Find 144 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTGAGAGGCCTTTGA+TGG	0.466577	3.2:+91528263	None:intergenic
AAAGCCTTACCTTATGATGT+CGG	0.566701	3.2:+91526715	None:intergenic
AAAGGGAGCAAGACAGTTTG+TGG	0.498610	3.2:+91526543	None:intergenic
AACATTGTCCCCACCAGCAC+AGG	0.520340	3.2:-91526017	MS.gene064435:CDS
AAGATCCTGGATGAAGAATT+CGG	0.462539	3.2:-91526517	MS.gene064435:intron
AAGCACAAGATTTCCATCAA+AGG	0.632662	3.2:-91528276	MS.gene064435:CDS
AAGCTTCCTTGGGCTGAGCT+TGG	0.444289	3.2:-91527060	MS.gene064435:CDS
AAGGTAGCAATCAATGGTTT+CGG	0.472649	3.2:-91527430	MS.gene064435:CDS
AAGTTAAAGGTAGCAATCAA+TGG	0.481757	3.2:-91527436	MS.gene064435:CDS
AATGAGACTATTACAGTTGA+TGG	0.342734	3.2:-91527120	MS.gene064435:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTAAAGGTAGCAATCAA+TGG	-	chr3.2:91526003-91526022	MS.gene064435:CDS	30.0%
AATGAGACTATTACAGTTGA+TGG	-	chr3.2:91526319-91526338	MS.gene064435:intron	30.0%
ATAAACTTTGCATTCCTCAT+CGG	+	chr3.2:91528314-91528333	None:intergenic	30.0%
ATGAAACAAAGCAATCATGA+AGG	+	chr3.2:91525248-91525267	None:intergenic	30.0%
ATTGATTGCTACCTTTAACT+TGG	+	chr3.2:91526004-91526023	None:intergenic	30.0%
CATCTTTGATCTATATTTCC+AGG	-	chr3.2:91527027-91527046	MS.gene064435:intron	30.0%
CTTCATTCAGAAAATGTTGT+TGG	-	chr3.2:91525762-91525781	MS.gene064435:CDS	30.0%
GCAAAGTAAAGTGAAGTATA+AGG	+	chr3.2:91525287-91525306	None:intergenic	30.0%
GTTTATCCTAAAAAGATGCA+TGG	+	chr3.2:91527866-91527885	None:intergenic	30.0%
TAAGTAACATCTTTGGTTAC+TGG	-	chr3.2:91525891-91525910	MS.gene064435:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	91525122	91528339	91525122	ID=MS.gene064435
chr3.2	mRNA	91525122	91528339	91525122	ID=MS.gene064435.t1;Parent=MS.gene064435
chr3.2	exon	91528241	91528339	91528241	ID=MS.gene064435.t1.exon1;Parent=MS.gene064435.t1
chr3.2	CDS	91528241	91528339	91528241	ID=cds.MS.gene064435.t1;Parent=MS.gene064435.t1
chr3.2	exon	91528033	91528146	91528033	ID=MS.gene064435.t1.exon2;Parent=MS.gene064435.t1
chr3.2	CDS	91528033	91528146	91528033	ID=cds.MS.gene064435.t1;Parent=MS.gene064435.t1
chr3.2	exon	91527336	91527497	91527336	ID=MS.gene064435.t1.exon3;Parent=MS.gene064435.t1
chr3.2	CDS	91527336	91527497	91527336	ID=cds.MS.gene064435.t1;Parent=MS.gene064435.t1
chr3.2	exon	91527041	91527208	91527041	ID=MS.gene064435.t1.exon4;Parent=MS.gene064435.t1
chr3.2	CDS	91527041	91527208	91527041	ID=cds.MS.gene064435.t1;Parent=MS.gene064435.t1
chr3.2	exon	91526725	91526885	91526725	ID=MS.gene064435.t1.exon5;Parent=MS.gene064435.t1
chr3.2	CDS	91526725	91526885	91526725	ID=cds.MS.gene064435.t1;Parent=MS.gene064435.t1
chr3.2	exon	91526518	91526579	91526518	ID=MS.gene064435.t1.exon6;Parent=MS.gene064435.t1
chr3.2	CDS	91526518	91526579	91526518	ID=cds.MS.gene064435.t1;Parent=MS.gene064435.t1
chr3.2	exon	91526363	91526412	91526363	ID=MS.gene064435.t1.exon7;Parent=MS.gene064435.t1
chr3.2	CDS	91526363	91526412	91526363	ID=cds.MS.gene064435.t1;Parent=MS.gene064435.t1
chr3.2	exon	91525687	91526093	91525687	ID=MS.gene064435.t1.exon8;Parent=MS.gene064435.t1
chr3.2	CDS	91525687	91526093	91525687	ID=cds.MS.gene064435.t1;Parent=MS.gene064435.t1
chr3.2	exon	91525122	91525254	91525122	ID=MS.gene064435.t1.exon9;Parent=MS.gene064435.t1
chr3.2	CDS	91525122	91525254	91525122	ID=cds.MS.gene064435.t1;Parent=MS.gene064435.t1

Gene Sequence

>MS.gene064435

ATGGCCACCCATGCAGCTTTAGCTTCTACAAGAATCCCTACAAGCACAAGATTTCCATCAAAGGCCTCTCACTCTTTCCCAACTCAATGTGCCTCAAAGGTTTCACTCTCTCTGTGGTTGTGTCCTTCATGATTGCTTTGTTTCATATCTTAATTTAAAGTGCCTTATACTTCACTTTACTTTGCTTGTGCAGAGACTTGAGGTGGCTGAATTCAGTGGACTAAAATCAACTTCATGCATTACCTATGCCAGTAATGCTAGAGAGTCTTCTTTTTCTGATGTTGTAGCTGCTCAACTCGCAACCAAGGTTATTTTCTAGTTACATGTTTTATATATCTCATTGGATCATGAGAGATTCCTTCCTTCTTTTATATGTAGCATAAATGTATTAGCTCCGATGAAGCACTGACACAAACACCAAATACGACGCAGACTTGTTGACAATGGTAATAGTTTGGAAAATGAAATAATTGAATGTAATCACATGTGTCGGTGTCAAACAATGACACGTTTTGGACACGAGTCACACATGTAATCTGAATCGTCGGTATTACATATTTTTGCTACATAGATTAGCTTTAAATATCTTCTTTGTAGCTAAATATATTTTTCATTAGATAAATTATCATACTTAGATACCCTTCATTCAGAAAATGTTGTTGGTTGCATAACATATTTGCATGGAAGCAACAACAAAATTGTAGTTAAATATCTCCTTTTAAAGCCATTCTCTTAAATCCCTTAAAGATCATTAAAGTAATATTGCAATTAAGTAACATCTTTGGTTACTGGACTGGAGCTAAATAAATTCAATTTGCTTATGGTTTGCAAATTATAATCAGGCCATTGGATCAACTGCTGTGAGGGGAGAGACTGTTGCCAAGTTAAAGGTAGCAATCAATGGTTTCGGACGCATTGGAAGAAATTTCCTGAGATGCTGGCACGGTCGAAAGGACTCACCACTCGAAGTAATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTAAGTTTTCAAATGCCATTGCTCCTTTAATTGTGTTGACTTAGTTTGCTTTGGTACTACAAACAAATTAGTTTCACTGAATTGAATGGTATAGTAATAGTGACATCCTCTTGTTTCACATATTCAGGCTTCACACTTGTTGAAATATGATTCTATGCTTGGAACATTTAAAGCAGATGTGAAAATACTAAATAATGAGACTATTACAGTTGATGGTAAGCCCATCCTTGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGACATTGTCATTGAGGTAAATTCAAACATCATCAATTGTAGGCCACAAAATGAAAATACAAGCATGTGATTGGTTCATCAACATAGTACTGTTTTATGAAAAATACGAAAAGAAAAATTTTCTGAATGTACTCGAGAGAATTTTTTTAAAGTTAATGAATTTTTGTTCAGGGAACTGGAGTGTTTGTGGATGGCCCTGGAGCCGGAAAGCACATCCAAGCAGGTGCCAAGAAAGTTATCATCACAGCTCCTGCAAAGGGCGCTGATATTCCAACTTACGTTGTTGGAGTAAATGAGCAAGACTACGGCCATGAAGTAGCCGACATCATAAGGTAAGGCTTTAATGTTTAAACTGTTTACCTCGTTGTGGATGTTGAGGTTGAGAACAAGGGTATCACAGCTGAGAATGTCAATGCAAGATAGTGTTAGTGTTTTGATTGATTATTCATATTCATTCTTATGTTTCTTAATGTACAGCAATGCTTCTTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCCTGGATGAAGAATTCGGTAAGCAAAAATTCTGATACTCATCATACTGATAGCTAAGATTGTAACAGCAACATTTGATTCCTAGCTCAAAGCCACTTAATCATCTTTGATCTATATTTCCAGGAATTGTTAAGGGAACCATGACAACCACACATTCCTACACAGGAGACCAGGTATATTATCAAACATCATATGTTTGTTGGAACTGAAAGCTTGTTTTACTTATGCGTGGTCCATTATTTATTTCCAATAGCTTCCTAGTCAATCTTCCAACTGAAAATGGATAAGAAGTTACAATAAGGCTCAGCTTGATCTCACTTATTTTTGACTACTTGAGCACTATTTCTAAAGCTCTTATTTTTAATTTTAATATAAATACAAAGTGATTTTTAGTGCCAAAACAAATCAAGCCAAACAAAGTCTAAAAATTGTATTTGTGCAGAGGCTTCTGGATGCTTCACACAGGGACTTGAGAAGAGCCAGGGCTGCAGCACTGAACATTGTCCCCACCAGCACAGGAGCAGCCAAGGCTGTCTCTCTAGTGCTGCCACAGCTCAAGGGAAAGCTCAACGGAATCGCCCTTCGTGTGCCAACACCTAATGTTTCAGTTGTTGACCTTGTGGTGAATGTTGCGAAGAAGGGTATTTCAGCTGAAGATGTCAATGCAGCATTCAGAAAGGCAGCTGAGGGACCATTGAAAGGTGTATTGGATGTCTGTGATGTTCCACTTGTGTCTGTTGACTTCCGCTGCACCGATGTTTCTTCAACTATTGATTCTTCCTTGACTATGGTCATGGGAGATGATATGGTCAAGGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGGTTAGATTACTATCCATATAATGAAGTTTCGTGTCATATAACTATTTTATTTATTTATTTTCCATTCCAGTATATACAAATAGAACATCCATGCATCTTTTTAGGATAAACAACTTACTTTAGCGCTTATCACAAAGTGCTTATGTACAAGTTCTTTCAATAATAAAAGCTAAAATAAAGTCAGTGTTTTCATAAGCTATCATGAAGAGCTTATGTAAATAATCTAAAAAGAACTTATGGACATGTGATAAACTGTTTCTACAAGTTCTCACAAACAATATATTAAGTGTTTATTTCAATAGAAAAGTTCAAATAAGTCAACCCAAACAGACCTCAAATGATGAAAGTTGCTGCTGGAGTTGTTGACTTTTTGTGTACTTGTAATATAGATATAGATCATGTTATTGATAGTTACAATGTTGGTGATTTCAGTCAAAGAGTGGTGGATTTGGCACATCTAGTAGCAAACAAATGGCCAGGCACCGCTCAAGCAGGGAGTGGAGATCCATTGGAGGACTTCTGTGAGACAAACCCGTCCGATGAGGAATGCAAAGTTTATGAATAG

Protein sequence

>MS.gene064435.t1

MATHAALASTRIPTSTRFPSKASHSFPTQCASKRLEVAEFSGLKSTSCITYASNARESSFSDVVAAQLATKAIGSTAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKADVKILNNETITVDGKPILVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYGHEVADIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGVLDVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTAQAGSGDPLEDFCETNPSDEECKVYE