AlfalfaGEDB | MS.gene90796

M. sativa cultivar XinJiangDaYe / MS.gene90796

KEGG: K00615
GO: GO:0003674 GO:0003824 GO:0004802 GO:0016740 GO:0016744
PFAM: PF00456.24 PF02779.27 PF02780.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90796.t1	XP_003592793.1	96.7	730	19	1	7	736	11	735	0.00E+00	1408.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90796.t1	Q8RWV0	82.9	727	124	0	7	733	12	738	0.0e+00	1225.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90796.t1	G7IF28	96.7	730	19	1	7	736	11	735	0.0e+00	1408.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene90796	0.827283	1.70E-54	-1.69E-46
MS.gene049171	MS.gene90796	0.925698	1.29E-90	-1.69E-46
MS.gene049173	MS.gene90796	0.872591	2.83E-67	-1.69E-46
MS.gene049181	MS.gene90796	-0.802261	6.10E-49	-1.69E-46
MS.gene049217	MS.gene90796	0.924019	1.23E-89	-1.69E-46
MS.gene049222	MS.gene90796	0.947631	4.62E-106	-1.69E-46
MS.gene049232	MS.gene90796	0.928007	5.30E-92	-1.69E-46
MS.gene049259	MS.gene90796	-0.820738	5.85E-53	-1.69E-46
MS.gene049281	MS.gene90796	-0.806222	9.13E-50	-1.69E-46
MS.gene049285	MS.gene90796	0.964331	3.42E-123	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene048888	MS.gene90796	PPI
MS.gene06030	MS.gene90796	PPI
MS.gene90796	MS.gene55762	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene90796.t1	MTR_5g059410	98.090	733	9	1	4	736	8	735	1484
MS.gene90796.t1	MTR_1g116120	98.090	733	9	1	4	736	8	735	1484
MS.gene90796.t1	MTR_4g024630	83.471	726	117	2	13	735	9	734	1256
MS.gene90796.t1	MTR_4g024630	88.235	578	68	0	158	735	3	580	1072
MS.gene90796.t1	MTR_0776s0010	51.874	667	306	9	69	726	921	1581	638

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene90796.t1	AT2G45290	80.811	740	126	2	4	735	9	740	1259
MS.gene90796.t1	AT2G45290	80.811	740	126	2	4	735	9	740	1259
MS.gene90796.t1	AT3G60750	82.740	730	126	0	4	733	9	738	1258
MS.gene90796.t1	AT3G60750	82.603	730	126	1	4	733	9	737	1251

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Find 216 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTAATTCGGGTCACCC+GGG	0.618320	1.4:+88121152	MS.gene90796:CDS
AAATCTAAATGCCCTGGCCA+AGG	0.569724	1.4:+88123402	MS.gene90796:CDS
AAGAGGAGGATTTGAGTGCA+GGG	0.503870	1.4:-88120971	None:intergenic
AAGCTTGCCAGGTGCTCTAT+TGG	0.380074	1.4:-88123742	None:intergenic
AAGGTTCTTCCTGGTCTTAT+TGG	0.215510	1.4:+88123421	MS.gene90796:CDS
AAGTGCCAATCCAACACCAT+TGG	0.610021	1.4:-88122088	None:intergenic
AATAACTCCGGCTTCACACA+AGG	0.617620	1.4:-88123665	None:intergenic
AATAAGACCAGGAAGAACCT+TGG	0.616495	1.4:-88123419	None:intergenic
AATCGAACATTGCGCTCTTC+TGG	0.242416	1.4:-88123514	None:intergenic
AATGAAGCGTGTTCACTTGC+CGG	0.335597	1.4:+88122339	MS.gene90796:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAAACCTTTCCTTTCT+TGG	+	chr1.4:88122684-88122703	MS.gene90796:intron	30.0%
AAGTAAACCTTTCCTTTCTT+GGG	+	chr1.4:88122685-88122704	MS.gene90796:intron	30.0%
ACCTAAACAACGAAAATACA+AGG	-	chr1.4:88122049-88122068	None:intergenic	30.0%
AGACAAACCTACTTTGATTA+AGG	+	chr1.4:88122557-88122576	MS.gene90796:CDS	30.0%
AGCAGTCAAAATTCAAAAGT+AGG	-	chr1.4:88123245-88123264	None:intergenic	30.0%
AGGTATGTTATATTAGGAGA+TGG	+	chr1.4:88122294-88122313	MS.gene90796:intron	30.0%
ATAGGTTCAAATCCAAACAA+AGG	+	chr1.4:88121545-88121564	MS.gene90796:intron	30.0%
ATGACTTTGTTGAAATCGTT+TGG	+	chr1.4:88123472-88123491	MS.gene90796:CDS	30.0%
CAAGATCATGAAAATATCAG+TGG	-	chr1.4:88122971-88122990	None:intergenic	30.0%
CATTACAGAAGAAGCAAAAA+AGG	-	chr1.4:88122014-88122033	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	88120524	88124311	88120524	ID=MS.gene90796
chr1.4	mRNA	88120524	88124311	88120524	ID=MS.gene90796.t1;Parent=MS.gene90796
chr1.4	exon	88120524	88120542	88120524	ID=MS.gene90796.t1.exon1;Parent=MS.gene90796.t1
chr1.4	CDS	88120524	88120542	88120524	ID=cds.MS.gene90796.t1;Parent=MS.gene90796.t1
chr1.4	exon	88120895	88121343	88120895	ID=MS.gene90796.t1.exon2;Parent=MS.gene90796.t1
chr1.4	CDS	88120895	88121343	88120895	ID=cds.MS.gene90796.t1;Parent=MS.gene90796.t1
chr1.4	exon	88121861	88121951	88121861	ID=MS.gene90796.t1.exon3;Parent=MS.gene90796.t1
chr1.4	CDS	88121861	88121951	88121861	ID=cds.MS.gene90796.t1;Parent=MS.gene90796.t1
chr1.4	exon	88122067	88122172	88122067	ID=MS.gene90796.t1.exon4;Parent=MS.gene90796.t1
chr1.4	CDS	88122067	88122172	88122067	ID=cds.MS.gene90796.t1;Parent=MS.gene90796.t1
chr1.4	exon	88122296	88122578	88122296	ID=MS.gene90796.t1.exon5;Parent=MS.gene90796.t1
chr1.4	CDS	88122296	88122578	88122296	ID=cds.MS.gene90796.t1;Parent=MS.gene90796.t1
chr1.4	exon	88122786	88122934	88122786	ID=MS.gene90796.t1.exon6;Parent=MS.gene90796.t1
chr1.4	CDS	88122786	88122934	88122786	ID=cds.MS.gene90796.t1;Parent=MS.gene90796.t1
chr1.4	exon	88123017	88123170	88123017	ID=MS.gene90796.t1.exon7;Parent=MS.gene90796.t1
chr1.4	CDS	88123017	88123170	88123017	ID=cds.MS.gene90796.t1;Parent=MS.gene90796.t1
chr1.4	exon	88123352	88124311	88123352	ID=MS.gene90796.t1.exon8;Parent=MS.gene90796.t1
chr1.4	CDS	88123352	88124311	88123352	ID=cds.MS.gene90796.t1;Parent=MS.gene90796.t1

Gene Sequence

>MS.gene90796

ATGAAAGTACTAATATTGGGTGGGAGGGATGCAAGAAGAAGAAGATTCGAATATCCTAATAATAATAATAATAATAATGAATGAAATTGTAAAATAAATAGATAGATGATGAGATGGATTGAGAGGTAGATAAGTGAGGGAGGAGATAGATAGCAAAGAAAGCATAGGCTGAGAATTTCCGCAGCTTATACACCAAACAAACACTACCAATCATATTCTATATTCTATCTATCTCCAAACACTCTTAACACTCTACTACTATTACTATTACTACACACTTTCTCCTTCTTCTTCTTCTTCTTCTTGATTGATTATTCTCTAATCAATCAATCACACTATGGCTTCTTCTTCTTCTCTTCATCTTTCTCAAGCATTCCTCGCACGTGCCGTATACCTCAACCCTGAAATTCGTGCATCATCACTCTCCTCCACTTCTTCCCTCTCCTTCCCTGCACTCAAATCCTCCTCTTCATGCAAACCAGCAGCAACCTCCTCAGCCGGTTCCCGTCGCAGAACCACACCAGCCATCCGCGCCACCGCTGTCGAAACACTCGACAAAACCACCGAAGCTTCTCTCGTTGAGAAATCAGTCAACACTATTCGATTCCTTGCTATCGATGCTGTTGAGAAAGCTAATTCGGGTCACCCGGGTTTACCCATGGGTTGTGCTCCAATGGGTCACATTCTATACGATGAAGTTATGAGATATAACCCAAAGAATCCTTCTTGGTTTAATCGTGATCGCTTTGTTTTGTCTGCTGGACATGGTTGTATGCTTCAGTATGCTCTTCTTCATCTTGCTGGTTATGACAGTGTCAAGGTTCTCTTTCAACTCAATCACTGTTTTTTACTCTTTAAACTAACCAACCAATTTACTTCTTTTCTCAACTTAACCAAATTTCAATATTTTATCTTAAAATTAAACTGAATTTTTCTATTGCTTTTAAACTTGTGGCCTGTGGGATTAGATAAATTTCAAATAGTATATTAAAATTGAAAATCTGCAATGGAGTTGGAGGTCATAGGTTCAAATCCAAACAAAGGAGAAAAATACTTACATAACAAACTAATTACTAACATTCGTTGTTTCCGACGAAAAAAATAATGAAAATTACTTTAATATTTTGGCTTGGTCAATTCGTAGCTGAAATTGTTCCTGATAGCTTATGTGGCAGAAATTTTGTTAAGTTTAGATATCATTTTGAAATTTCGTTAATTTTAAAGATAGAATTTCCTGACTAACAATTTCATTACTATAATGAATTGATATGCACAGTGGAATCTTTCATTTATTGACTGAGCTGAATTTGTTGTGTTTGGGTTGAATAAAATAATAGGAAGAAGACTTGAAGCAGTTTCGACAATGGGGAAGCAAAACTCCTGGACATCCCGAGAACTTCGAGACATATGGAATTGAAGTCACCACAGGTCTTATAAAAATAACAATATTGATAATAATATGTCTCTTTAGTCCATGTTACTGTGAGCCTTTTTTGCTTCTTCTGTAATGAATTTCAACTATCCTTGTATTTTCGTTGTTTAGGTCCTCTGGGTCAGGGTATTGCCAATGGTGTTGGATTGGCACTTGCCGAGAAGCACTTGGCTGCACGGTTTAACAAGCCTGACAGTGAGATTGTTGACCATTACACGTGAGATAACCAATTACATCTTGTTACTTGTTGATCTATACATGCTTGCACTTGTGAATTGCACTGTTTTCCTGATTCGTAATGTGACATTTATCTTTTGCTTTTGTTTTTGGTCTGCTCTAGGTATGTTATATTAGGAGATGGTTGTCAAATGGAAGGAATTTCAAATGAAGCGTGTTCACTTGCCGGACATTGGGGTCTTGGAAAGCTTATTGCATTTTATGATGATAATCACATATCTATTGATGGTGACACTGAAATTGCATTCACTGAGAATGTTGATCAACGTTTTGAGGCACTTGGATGGCATGTGATTTGGGTAAAGAACGGAAATACTGGATATGATGAAATTCGTGCAGCCATTAAGGAAGCAAAGGCTGTCACAGACAAACCTACTTTGATTAAGGTTAGTGACATGAAATGGAAATTCAAGCAAGTGGATTTACCCAATCCATGTTATAGATAAATTGATTATACTGGTTGAAGTGACATAATGTGACTGTTGAGGGTGAAAGTAAACCTTTCCTTTCTTGGGTGTTGTTATATCATTTTTATTTGGTTTCGATGCTGGTCACATGGTAGTATTTCATTAATTTTGATTACTATTTGACAGGTTACCACTACCATTGGATTTGGTTCTCCAAACAAAGCTAATTCCTACAGTGTTCACGGAGCTGCATTGGGTTCTAAAGAAGTAGATGCTACAAGGCAGAATCTTGGATGGCCATATGAGCCTTTCCATGTGCCAGAAGATGTTAAAAAGTATGAATGGGAGCATTAGTTATATGTTTGTTTCCACTGATATTTTCATGATCTTGATTATAACCTGCTTAACATTCCTTAGGCATTGGAGTCGCCATACCCCTGAGGGTGCTGCACTCGAAGCTGAGTGGAATGCTAAATTTGCTGAGTATGAGAAGAAATACAAAGAGGAGGCTGCAGAGCTAAAGGCTATTATTAATCGTGAATTACCTGCTGATTGGGAGAAAGCACTTCCGGTGAGTAAAGTGTCATACTTTTTGGTTTCTATTGATTTTGTCTTGAGGTATCTCTTCTGTAGTTGTTTGATCCTACTTTTGAATTTTGACTGCTTTTGAAGTTTTAAACTAAACAAAACTTGAGTTCTATCAACCATTTGTGGAATATTGATCACAATTCCAATTTGACTTCAACTTTCAGACTTACACTCCGGAAACCCCTGCTGATGCTACAAGAAATCTGTCACAGCAAAATCTAAATGCCCTGGCCAAGGTTCTTCCTGGTCTTATTGGTGGCAGTGCAGATCTTGCCTCTTCCAACATGACTTTGTTGAAATCGTTTGGAGATTTCCAAAAGGCTACTCCAGAAGAGCGCAATGTTCGATTTGGTGTCAGGGAACACGCAATGGGAGCAATCTGCAATGGTATTGCTCTTCATAGCCCGGGATTCATTCCATACTGTGCAACTTTCTTTGTCTTCACCGACTACATGAGAGCTGCCATAAGGATTTCTGCCTTGTGTGAAGCCGGAGTTATTTATGTTATGACCCATGATTCAATTGGACTTGGAGAGGATGGACCAACTCATCAGCCAATAGAGCACCTGGCAAGCTTCCGAGCAATGCCAAATGTTTTGATGCTTCGTCCAGCTGATGGTAATGAAACTGCTGGATCATACAGAGTTGCCGTGCTTAACCAGAAGAGACCCTCAATTCTTGCCCTTTCTCGGCAAAAGTTGCCTAACCTTCCGGGAACTTCTATTGAAGGTGTTGAAAAGGGTGGCTACACCATTTCAGACAACTCATCAGGTAACAAGCCTGATGTTATTTTGATTGGAACTGGTTCTGAGTTGGAAATTGCCGCTGCCGCCGCTGATGATCTAAGGAAAGAAGGAAAAACTGTAAGAGTTGTTTCTTTTGTTAGCTGGGAACTTTTTGATGATCAGTCAGATGAATACAAGGAGAGTGTTCTCCCTGCTTCTGTGACAGCTAGAGTCAGCATTGAGGCGGGATCAACATTTGGTTGGCATAAGATTGTTGGAAGCAAGGGAAAAACCATTGGCATTGATCGATTTGGAGCAAGTGCTCCAGCAGGGAAAATATACAAGGAGTATGGCATAACCAAGGAAGCTGTTATTTCTGCTGCCAAAGAAGTTTCATAG

Protein sequence

>MS.gene90796.t1

MKVLILAFLARAVYLNPEIRASSLSSTSSLSFPALKSSSSCKPAATSSAGSRRRTTPAIRATAVETLDKTTEASLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPSWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSKTPGHPENFETYGIEVTTGPLGQGIANGVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTENVDQRFEALGWHVIWVKNGNTGYDEIRAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGAALGSKEVDATRQNLGWPYEPFHVPEDVKKHWSRHTPEGAALEAEWNAKFAEYEKKYKEEAAELKAIINRELPADWEKALPTYTPETPADATRNLSQQNLNALAKVLPGLIGGSADLASSNMTLLKSFGDFQKATPEERNVRFGVREHAMGAICNGIALHSPGFIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMLRPADGNETAGSYRVAVLNQKRPSILALSRQKLPNLPGTSIEGVEKGGYTISDNSSGNKPDVILIGTGSELEIAAAAADDLRKEGKTVRVVSFVSWELFDDQSDEYKESVLPASVTARVSIEAGSTFGWHKIVGSKGKTIGIDRFGASAPAGKIYKEYGITKEAVISAAKEVS