AlfalfaGEDB | MS.gene068674

M. sativa cultivar XinJiangDaYe / MS.gene068674

KEGG: K11517
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF01070.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068674.t1	XP_024633287.1	98.7	372	5	0	1	372	1	372	2.30E-203	718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068674.t1	P05414	88.9	370	39	1	3	372	2	369	1.3e-186	653.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068674.t1	A0A072V9Z1	98.7	372	5	0	1	372	1	372	1.6e-203	718.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene068674	0.838777	2.35E-57	-1.69E-46
MS.gene049171	MS.gene068674	0.916893	1.03E-85	-1.69E-46
MS.gene049173	MS.gene068674	0.864416	1.24E-64	-1.69E-46
MS.gene049217	MS.gene068674	0.892665	1.29E-74	-1.69E-46
MS.gene049222	MS.gene068674	0.934271	5.22E-96	-1.69E-46
MS.gene049232	MS.gene068674	0.91946	4.38E-87	-1.69E-46
MS.gene049285	MS.gene068674	0.952031	5.80E-110	-1.69E-46
MS.gene049320	MS.gene068674	0.957627	1.72E-115	-1.69E-46
MS.gene049369	MS.gene068674	0.841816	3.78E-58	-1.69E-46
MS.gene04939	MS.gene068674	0.841451	4.72E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene063442	MS.gene068674	PPI
MS.gene068674	MS.gene063442	PPI
MS.gene068674	MS.gene039185	PPI
MS.gene068674	MS.gene062839	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068674.t1	MTR_2g070420	98.656	372	5	0	1	372	1	372	0.0	751
MS.gene068674.t1	MTR_1g072440	59.091	88	28	3	10	94	4	86	2.32e-27	103
MS.gene068674.t1	MTR_3g076640	48.649	74	35	2	4	76	4	75	7.35e-13	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene068674.t1	AT3G14420	89.315	365	39	0	3	367	2	366	666
MS.gene068674.t1	AT3G14420	89.315	365	39	0	3	367	2	366	666
MS.gene068674.t1	AT3G14420	89.041	365	40	0	3	367	2	366	663
MS.gene068674.t1	AT3G14415	88.767	365	41	0	3	367	2	366	663
MS.gene068674.t1	AT3G14415	88.767	365	41	0	3	367	2	366	663
MS.gene068674.t1	AT3G14415	87.332	371	41	1	3	367	2	372	657
MS.gene068674.t1	AT4G18360	85.596	361	52	0	3	363	2	362	651
MS.gene068674.t1	AT4G18360	85.596	361	52	0	3	363	2	362	651
MS.gene068674.t1	AT3G14420	90.202	347	34	0	21	367	1	347	635
MS.gene068674.t1	AT3G14420	90.625	320	30	0	48	367	40	359	585

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Find 78 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGGATTCCAGGTCCAG+TGG	0.630109	2.2:+21479448	None:intergenic
AAATTGATCGTACTCTGAGC+TGG	0.527284	2.2:-21478766	MS.gene068674:CDS
AACCAATATCAGTGAGTATG+AGG	0.469087	2.2:-21481095	MS.gene068674:CDS
AACCATAAGTGCCTTAGAAG+AGG	0.579700	2.2:-21478180	MS.gene068674:intron
AACCGATGTCTTCAAGGCTT+TGG	0.403047	2.2:-21477996	MS.gene068674:CDS
AAGGCAGAAATTGCCAAAGA+TGG	0.545523	2.2:-21481065	MS.gene068674:CDS
AAGTGGATGCCGCTCACTCA+AGG	0.555841	2.2:-21477346	MS.gene068674:CDS
AAGTTGTCTTGCTCCGTGGT+TGG	0.559227	2.2:+21478217	None:intergenic
AATCAAGTTGTCTTGCTCCG+TGG	0.663023	2.2:+21478213	None:intergenic
ACGCCCTGTGGTGTATTCTC+TGG	0.532490	2.2:-21477442	MS.gene068674:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATGTCACTAAACACAAAA+TGG	+	chr2.2:21478423-21478442	None:intergenic	30.0%
AGAAAAAGCAATTATACCCT+CGG	+	chr2.2:21477682-21477701	None:intergenic	30.0%
ATATGGTTGACAAACATTAC+AGG	-	chr2.2:21477538-21477557	MS.gene068674:intron	30.0%
ATCTCTGCAAATATCTACAT+GGG	+	chr2.2:21478601-21478620	None:intergenic	30.0%
CATCAACAACTATGATAACT+TGG	-	chr2.2:21478186-21478205	MS.gene068674:CDS	30.0%
CATGTCACTAAACACAAAAT+GGG	+	chr2.2:21478422-21478441	None:intergenic	30.0%
CCTGTTAATCTTAAACACAA+TGG	-	chr2.2:21480693-21480712	MS.gene068674:intron	30.0%
CTGAATTCATAATTCTTGAG+TGG	-	chr2.2:21480653-21480672	MS.gene068674:intron	30.0%
GAATTCAAGTGAAGAAGAAA+TGG	+	chr2.2:21478998-21479017	None:intergenic	30.0%
GTACACCTAAATAAAGAACA+TGG	+	chr2.2:21479069-21479088	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	21477272	21481128	21477272	ID=MS.gene068674
chr2.2	mRNA	21477272	21481128	21477272	ID=MS.gene068674.t1;Parent=MS.gene068674
chr2.2	exon	21480989	21481128	21480989	ID=MS.gene068674.t1.exon1;Parent=MS.gene068674.t1
chr2.2	CDS	21480989	21481128	21480989	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2	exon	21480716	21480840	21480716	ID=MS.gene068674.t1.exon2;Parent=MS.gene068674.t1
chr2.2	CDS	21480716	21480840	21480716	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2	exon	21479891	21479937	21479891	ID=MS.gene068674.t1.exon3;Parent=MS.gene068674.t1
chr2.2	CDS	21479891	21479937	21479891	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2	exon	21479436	21479513	21479436	ID=MS.gene068674.t1.exon4;Parent=MS.gene068674.t1
chr2.2	CDS	21479436	21479513	21479436	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2	exon	21479193	21479317	21479193	ID=MS.gene068674.t1.exon5;Parent=MS.gene068674.t1
chr2.2	CDS	21479193	21479317	21479193	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2	exon	21478918	21478984	21478918	ID=MS.gene068674.t1.exon6;Parent=MS.gene068674.t1
chr2.2	CDS	21478918	21478984	21478918	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2	exon	21478763	21478825	21478763	ID=MS.gene068674.t1.exon7;Parent=MS.gene068674.t1
chr2.2	CDS	21478763	21478825	21478763	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2	exon	21478505	21478574	21478505	ID=MS.gene068674.t1.exon8;Parent=MS.gene068674.t1
chr2.2	CDS	21478505	21478574	21478505	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2	exon	21478181	21478281	21478181	ID=MS.gene068674.t1.exon9;Parent=MS.gene068674.t1
chr2.2	CDS	21478181	21478281	21478181	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2	exon	21477973	21478077	21477973	ID=MS.gene068674.t1.exon10;Parent=MS.gene068674.t1
chr2.2	CDS	21477973	21478077	21477973	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2	exon	21477272	21477469	21477272	ID=MS.gene068674.t1.exon11;Parent=MS.gene068674.t1
chr2.2	CDS	21477272	21477469	21477272	ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1

Gene Sequence

>MS.gene068674

ATGGGAGAGATAACCAATATCAGTGAGTATGAGGAAATTGCAAGGCAGAAATTGCCAAAGATGGCGTTTGACTACTATGCATCTGGTGCTGAGGACCAGTGGACTCTTCAAGAAAACAGAAATGCCTTTTCCAAAATTTTGTAAGATTTCATATAACTTATTTTGACAGTTCCTAAGTTACCAAATTATGTTACTTTATTATGTTCCTTTGATGTTTTGTACACCTACGACTCTGAGAACAAAAACAAATGTTAATGTGCTGAAAAATATGGTTGACAAACATTACAGGTTTAGGCCGCGAATTCTTATCGATGTGAGCAAGATAGACATGTCAACTACTGTCCTTGGCTTCAAAATTTCCATGCCAATCATGATTGCTCCAACTGCTTTTCAGAAAATGGCTCATCCCGAGGGTATAATTGCTTTTTCTTTAAATTCACTTGGATTTCTGAAATGGAAAATGAAGTTGTTTTGTTTTTGCAATATTCTGTTCATTTTGTTAGAAGGGAAAAAAATCATGAAAAATCATGCATGACATGAATTGTGGAGAGTTTTAGCTTATATTACCCTTCTGGATACTTACATGCTATGAAAATGATTACTATAAGCATTTGTGAGACTATTTAGAAACAACTTATCTACTTGATTTATGTACAAAATGATAATTGAGACGGAGATCATTAAGTTTATCTGTGCTTATCAAAACAACTTATGATATGTTTATATGTTGTTTTTAGCTTATTTCCATAAGCTTCAAAATGTAGCTTATGAAAACAGCTTAGAGCTTAAATGAAAGTAATTTGACTTTATTTTATCTTTTGTTATAGAAATAACATATACACGAACACTGATACGATAAATGTTTATGCTTTACGCACTTACTCAAACTGTTTATCCAAACAAGGCGCTAGTGACATCAACAACTATGATAACTTGGTTTCTAGTTGTGTAACTTCCACTGATAAGCTATTACACTGAAATTAAGTGTGAATAAACATTAGTAATTCTTAAAAAAAATATCATCTGCTAGTTTTGATAAATGGATAAAAACAAACTCAATGGTTTTTTATTAAGAAAACTCTACAATAGGATAGCAACATGAGATTTAAATTGTCGATGTTCTTGTATTATATATTATATTTCAAATCCCATTTTGTGTTTAGTGACATGTACAATTTTTTTCTTGTGCAGGAGAATATGCAACAGCAAGAGCTGCATCAGCTGCTGGAACAATCATGGTACTTCTCTTCCTATTTTTGTAATAAACATTTGATTTGTATACACTGTCATATAAAACATTTTTACACATGCGTTCAATCAAATCTTCCCATGTAGATATTTGCAGAGATGTTTTAGAAACAAACAAAACTAAGTGACATGATAGTGTAATTTGATTGGATGCATGCGGAAACAATTTTTGCATAGCACAATATTTGGAAAAAATGAAAATAGCTTATTACATGTCGGTAAAGTGTTTTTAGCATATGTAGAGTTTATCCTCATTACTTCTTCAATTAATTCTAAAATCAGAAAACACATAAGCTCTTATACGATTAACACTTATTTAACTGTATATTCAAATCAGTTACTTCAATTAACTTGTTGATTCTTTCAGACGTTGTCATCATGGGCGACTTCAAGTGTCGAAGAAGTTGCTTCCACTGGACCTGGAATCCGCTTTTTCCAGTTATATGTGAGCAACAAAAACATTATTCTCTCAGTTCCATTTCTTCTTCACTTGAATTCTACGAGAAATAGTTCGTTTCTCTTATATTGTTATATGTTCTGTATTGGCCATGTTCTTTATTTAGGTGTACAAGGACAGGAATGTTGTTGCTCAGCTTGTGAGAAGAGCTGAAAAAGCTGGATTCAAAGCTATTGCCCTTACTGTTGATACTCCAAGACTTGGACGCAGAGAAGCTGATATCAAGAACAGGTAACTCGTTGCGGCTGTGTTGTGATTCTTAATATTGCAAAGAATCATATTTACATGAGGTTGATGCGGCCACAATTGCAATCACTATAACATAACTGAAATATCGCATTTATTGATAACTTGATCAATAAGGAATACAATAGACTCTATTTATACATGAGTTTCAGCTTTAATGTAATAAAGATTAATTATAAATTTTCTTTTACAGATTTGTTCTGCCACCATTTTTGACATTGAAGAATTTTGAAGGACTGAACCTTGGAAAGATGGACGAAGTAAGTGAGATCAATTATTACAAAATTAGTAACATAGTTTAATGGTCTTACCTCTATCATCATTAATATAATTGTTACCTTGGTCCATTTAGGCTAATGACTCTGGACTTGCTTCATATGTTGCTGGTCAAATTGATCGTACTCTGAGCTGGAAGGTATGTTACAAGTAAAATCCATGTCACCAATTTGTTCGCTCAATTCGTTGTTTTTGATTGATAAGTAGCATGCATGCTGACATTAGAAAAACAAAAGAAAACACTACTTTTGGTTGTCATTTTTAGTCTACATAATGAAATTTTCAAGGTTACAATGATTTAGTGTTGTTTTTGTTAATTTTGTGCAGGATGTGAAGTGGCTTCAGACTATCACCAGCCTTCCAATTCTTGTGAAGGGTGTACTCACTGCTGAGGATAGTAAGCAAAACAAAACCTGTTTGAGAATTCTATTAATACACTTTCTAACACATTTTTTTCGATACACTGTTATATTTAACACTTTTTTCAATACGCTATTATTAGGGTCTCACATACATTATTTCATATAAAAGAAGTGATTACAACTAATTCACATAATTTAGTGAACTATAGATGAATTTTTTACGATTATTTTATTAATGGTTTGATGTAAATTTTGCAGCAAGGCTAGCAGTGCAAAGTGGTGCAGCTGGAATTATTGTGTCCAACCACGGAGCAAGACAACTTGATTATGTTCCAGCAACCATAAGTGCCTTAGAAGAGGTACTTTAAGAATGTCAAGTTATTATATAACTGAATTAATTGTATAAATCATTCTACATAATAAGATTGTTTATATCATAATTGTGTTGCTGAAATTACTTAGGTTGTGAAAGCTGCTCAAGGTCGTGTTCCTGTATTTTTGGATGGAGGTGTACGCCGTGGAACCGATGTCTTCAAGGCTTTGGCACTTGGTGCCTCTGGCATATTTGTGAGTATACTCATAGCATTTCCCAATATTTTAAATTCTCATTGCCTCATTAGTAGTAATTTCTTAATTCGGATCGTCTATGGTCACAGTGTCGACGCATTCATGTAGTTAACGGTTTGGAGCTGTTGTGACTCTTATTTTAAGCTCTCTAAGTCAATCATAAAAGCCAACTTTATCAAATTCGTTTGATTTTGATCAAACATCTCCAAAGTGTTGATTGCGCATCTGAATTCATAATTCTTGAGTGGCTATAGTATCTATGAACCCTGTTAATCTTAAACACAATGGTTGAAATATGCGAGTAGTACCCTAGTTCGACCTCTGGCTGAAATAATCAGGAGTAATCATTGATCAACTTAATTTACCTCCCGACCAAACTTTTATTACGACACTTGTCTTCTATAATATATGGAGGATTAAGACGAACAAAACCAAAATAATTTATCGTTATAACCACCATTAGTACTGCCGTTATCTTAACGAACAAATTATGCAATGTCTAGATTGGACGCCCTGTGGTGTATTCTCTGGCTGCTGATGGAGAAGCTGGTGTAAGAAAGGTCCTTCAAATGTTACGTGATGAGTTTGAGTTAACAATGGCTTTAAGTGGATGCCGCTCACTCAAGGAAATCACTCGTGACCACATCGTTGCTGATTGGGACACCCCTCGTGTTAATCCTCGTGCCATACCAAGATTATGA

Protein sequence

>MS.gene068674.t1

MGEITNISEYEEIARQKLPKMAFDYYASGAEDQWTLQENRNAFSKILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLNLGKMDEANDSGLASYVAGQIDRTLSWKDVKWLQTITSLPILVKGVLTAEDTRLAVQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAADGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRDHIVADWDTPRVNPRAIPRL