AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068674


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068674.t1 MTR_2g070420 98.656 372 5 0 1 372 1 372 0.0 751
MS.gene068674.t1 MTR_1g072440 59.091 88 28 3 10 94 4 86 2.32e-27 103
MS.gene068674.t1 MTR_3g076640 48.649 74 35 2 4 76 4 75 7.35e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068674.t1 AT3G14420 89.315 365 39 0 3 367 2 366 0.0 666
MS.gene068674.t1 AT3G14420 89.315 365 39 0 3 367 2 366 0.0 666
MS.gene068674.t1 AT3G14420 89.041 365 40 0 3 367 2 366 0.0 663
MS.gene068674.t1 AT3G14415 88.767 365 41 0 3 367 2 366 0.0 663
MS.gene068674.t1 AT3G14415 88.767 365 41 0 3 367 2 366 0.0 663
MS.gene068674.t1 AT3G14415 87.332 371 41 1 3 367 2 372 0.0 657
MS.gene068674.t1 AT4G18360 85.596 361 52 0 3 363 2 362 0.0 651
MS.gene068674.t1 AT4G18360 85.596 361 52 0 3 363 2 362 0.0 651
MS.gene068674.t1 AT3G14420 90.202 347 34 0 21 367 1 347 0.0 635
MS.gene068674.t1 AT3G14420 90.625 320 30 0 48 367 40 359 0.0 585
MS.gene068674.t1 AT3G14420 90.625 320 30 0 48 367 46 365 0.0 583
MS.gene068674.t1 AT4G18360 84.665 313 48 0 3 315 2 314 0.0 558
MS.gene068674.t1 AT3G14130 61.972 355 132 1 1 355 1 352 7.64e-163 460
MS.gene068674.t1 AT3G14130 61.972 355 132 1 1 355 1 352 7.64e-163 460
MS.gene068674.t1 AT3G14150 60.845 355 136 1 1 355 1 352 6.28e-160 453
MS.gene068674.t1 AT3G14150 60.845 355 136 1 1 355 1 352 6.28e-160 453
MS.gene068674.t1 AT4G18360 85.714 238 34 0 3 240 2 239 5.47e-153 431
MS.gene068674.t1 AT3G14130 63.312 308 110 1 48 355 4 308 2.95e-140 401
MS.gene068674.t1 AT3G14150 60.300 267 103 1 89 355 3 266 3.94e-112 328
MS.gene068674.t1 AT3G14150 60.300 267 103 1 89 355 3 266 3.94e-112 328
MS.gene068674.t1 AT3G14150 60.300 267 103 1 89 355 3 266 3.94e-112 328
MS.gene068674.t1 AT3G14130 62.602 246 89 1 110 355 2 244 8.32e-112 327
MS.gene068674.t1 AT3G14150 60.569 246 94 1 110 355 2 244 8.84e-109 319
MS.gene068674.t1 AT3G14150 60.569 246 94 1 110 355 2 244 8.84e-109 319

Find 78 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAATCTTACAAAATTT+TGG 0.098632 2.2:+21480976 None:intergenic
TACCTCTTCTAAGGCACTTA+TGG 0.288795 2.2:+21478178 None:intergenic
TTCCTCATACTCACTGATAT+TGG 0.304687 2.2:+21481093 None:intergenic
TTCTTAAAGTACCTCTTCTA+AGG 0.314628 2.2:+21478169 None:intergenic
GCTTTGGCACTTGGTGCCTC+TGG 0.345429 2.2:-21477980 MS.gene068674:CDS
GTCTTCAAGGCTTTGGCACT+TGG 0.349066 2.2:-21477989 MS.gene068674:CDS
GGACTTGCTTCATATGTTGC+TGG 0.352126 2.2:-21478791 MS.gene068674:CDS
TCTAAGGCACTTATGGTTGC+TGG 0.360123 2.2:+21478185 None:intergenic
AGTACACCCTTCACAAGAAT+TGG 0.361205 2.2:+21478519 None:intergenic
TAGTAGTCAAACGCCATCTT+TGG 0.400379 2.2:+21481052 None:intergenic
AACCGATGTCTTCAAGGCTT+TGG 0.403047 2.2:-21477996 MS.gene068674:CDS
CCGTGGAACCGATGTCTTCA+AGG 0.420956 2.2:-21478002 MS.gene068674:CDS
TGACCACATCGTTGCTGATT+GGG 0.421642 2.2:-21477313 MS.gene068674:CDS
GCAAGAGCTGCATCAGCTGC+TGG 0.425139 2.2:-21479901 MS.gene068674:CDS
GCTTCTCTGCGTCCAAGTCT+TGG 0.429282 2.2:+21479208 None:intergenic
ACTCATCACGTAACATTTGA+AGG 0.447093 2.2:+21477388 None:intergenic
GTGACCACATCGTTGCTGAT+TGG 0.449542 2.2:-21477314 MS.gene068674:CDS
TCCATTTAGGCTAATGACTC+TGG 0.458314 2.2:-21478812 MS.gene068674:intron
TCTTTCAGACGTTGTCATCA+TGG 0.460570 2.2:-21479499 MS.gene068674:intron
GTGTATTCTCTGGCTGCTGA+TGG 0.460684 2.2:-21477432 MS.gene068674:CDS
GCGTTTGACTACTATGCATC+TGG 0.462223 2.2:-21481043 MS.gene068674:CDS
CTTTCAGACGTTGTCATCAT+GGG 0.468363 2.2:-21479498 MS.gene068674:intron
AACCAATATCAGTGAGTATG+AGG 0.469087 2.2:-21481095 MS.gene068674:CDS
GCAGTTGGAGCAATCATGAT+TGG 0.471140 2.2:+21480742 None:intergenic
TTATTTAGGTGTACAAGGAC+AGG 0.473436 2.2:-21479303 MS.gene068674:intron
CTGGCTGCTGATGGAGAAGC+TGG 0.478038 2.2:-21477423 MS.gene068674:CDS
GCAGTGCAAAGTGGTGCAGC+TGG 0.480581 2.2:-21478251 MS.gene068674:CDS
GAAGTTGCTTCCACTGGACC+TGG 0.482888 2.2:-21479458 MS.gene068674:CDS
GTCGAAGAAGTTGCTTCCAC+TGG 0.490758 2.2:-21479464 MS.gene068674:CDS
GTCTTGGAGTATCAACAGTA+AGG 0.491873 2.2:+21479224 None:intergenic
GAGTTAACAATGGCTTTAAG+TGG 0.494236 2.2:-21477363 MS.gene068674:CDS
GTTCTTTATTTAGGTGTACA+AGG 0.502004 2.2:-21479308 MS.gene068674:intron
AGGACTGAACCTTGGAAAGA+TGG 0.503842 2.2:-21478923 MS.gene068674:CDS
GACATGTCAACTACTGTCCT+TGG 0.511523 2.2:-21480781 MS.gene068674:CDS
CAGCCTTCCAATTCTTGTGA+AGG 0.516162 2.2:-21478526 MS.gene068674:CDS
GAGAAGCTGATATCAAGAAC+AGG 0.524863 2.2:-21479192 MS.gene068674:intron
ATCAGCTGCTGGAACAATCA+TGG 0.526902 2.2:-21479890 MS.gene068674:intron
AAATTGATCGTACTCTGAGC+TGG 0.527284 2.2:-21478766 MS.gene068674:CDS
ACGCCCTGTGGTGTATTCTC+TGG 0.532490 2.2:-21477442 MS.gene068674:CDS
CATAATCTTGGTATGGCACG+AGG 0.535981 2.2:+21477273 None:intergenic
TTACTTCGTCCATCTTTCCA+AGG 0.537036 2.2:+21478914 None:intergenic
CTCACATCGATAAGAATTCG+CGG 0.537846 2.2:+21480811 None:intergenic
TGGAGAAGCTGGTGTAAGAA+AGG 0.545364 2.2:-21477412 MS.gene068674:CDS
AAGGCAGAAATTGCCAAAGA+TGG 0.545523 2.2:-21481065 MS.gene068674:CDS
CTTCACAAGAATTGGAAGGC+TGG 0.548322 2.2:+21478527 None:intergenic
AGCCTTCCAATTCTTGTGAA+GGG 0.552515 2.2:-21478525 MS.gene068674:CDS
AAGTGGATGCCGCTCACTCA+AGG 0.555841 2.2:-21477346 MS.gene068674:CDS
CAGAAAATGGCTCATCCCGA+GGG 0.557082 2.2:-21480715 MS.gene068674:intron
AAGTTGTCTTGCTCCGTGGT+TGG 0.559227 2.2:+21478217 None:intergenic
TCAGAAAATGGCTCATCCCG+AGG 0.565352 2.2:-21480716 MS.gene068674:CDS
CCTTGAAGACATCGGTTCCA+CGG 0.578507 2.2:+21478002 None:intergenic
AACCATAAGTGCCTTAGAAG+AGG 0.579700 2.2:-21478180 MS.gene068674:intron
GCAAGGCTAGCAGTGCAAAG+TGG 0.582697 2.2:-21478260 MS.gene068674:CDS
GAGTGATTTCCTTGAGTGAG+CGG 0.593581 2.2:+21477337 None:intergenic
CATCTGGTGCTGAGGACCAG+TGG 0.600366 2.2:-21481027 MS.gene068674:CDS
TGGAGCAATCATGATTGGCA+TGG 0.601089 2.2:+21480747 None:intergenic
CTACTATGCATCTGGTGCTG+AGG 0.603217 2.2:-21481035 MS.gene068674:CDS
TAGGTTGTGAAAGCTGCTCA+AGG 0.605864 2.2:-21478058 MS.gene068674:CDS
ACTGTTGATACTCCAAGACT+TGG 0.606482 2.2:-21479220 MS.gene068674:CDS
GCAGCCAGAGAATACACCAC+AGG 0.615884 2.2:+21477438 None:intergenic
TCTTGGAGTATCAACAGTAA+GGG 0.618142 2.2:+21479225 None:intergenic
TGATGAGTTTGAGTTAACAA+TGG 0.619751 2.2:-21477373 MS.gene068674:CDS
GGAATTATTGTGTCCAACCA+CGG 0.619925 2.2:-21478230 MS.gene068674:CDS
TGATCGTACTCTGAGCTGGA+AGG 0.628034 2.2:-21478762 MS.gene068674:intron
AAAGCGGATTCCAGGTCCAG+TGG 0.630109 2.2:+21479448 None:intergenic
CACCCTTCACAAGAATTGGA+AGG 0.648050 2.2:+21478523 None:intergenic
TTGGATGGAGGTGTACGCCG+TGG 0.653698 2.2:-21478019 MS.gene068674:CDS
CAGCCAGAGAATACACCACA+GGG 0.658781 2.2:+21477439 None:intergenic
AATCAAGTTGTCTTGCTCCG+TGG 0.663023 2.2:+21478213 None:intergenic
TGCCAAAGCCTTGAAGACAT+CGG 0.666124 2.2:+21477994 None:intergenic
GTGAGTATGAGGAAATTGCA+AGG 0.666466 2.2:-21481084 MS.gene068674:CDS
TGTCCCAATCAGCAACGATG+TGG 0.667462 2.2:+21477310 None:intergenic
TGTCTAGATTGGACGCCCTG+TGG 0.692710 2.2:-21477454 MS.gene068674:intron
GGCACGAGGATTAACACGAG+GGG 0.715789 2.2:+21477287 None:intergenic
TATACTCACAAATATGCCAG+AGG 0.718024 2.2:+21477964 None:intergenic
TGGCACGAGGATTAACACGA+GGG 0.726021 2.2:+21477286 None:intergenic
GAAGGGTGTACTCACTGCTG+AGG 0.727281 2.2:-21478508 MS.gene068674:CDS
ATGGCACGAGGATTAACACG+AGG 0.730624 2.2:+21477285 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACGATTATTTTATTAA+TGG - chr2.2:21480077-21480096 MS.gene068674:intron 10.0%
!! AAATTAGTAACATAGTTTAA+TGG - chr2.2:21479505-21479524 MS.gene068674:intron 15.0%
!! AATTATATTAATGATGATAG+AGG + chr2.2:21479536-21479555 None:intergenic 15.0%
!! CAAATGTTTATTACAAAAAT+AGG + chr2.2:21478524-21478543 None:intergenic 15.0%
!! CATAATAAAGTAACATAATT+TGG + chr2.2:21477455-21477474 None:intergenic 15.0%
!! TTAGTAGTAATTTCTTAATT+CGG - chr2.2:21480477-21480496 MS.gene068674:intron 15.0%
!!! CAATGAGAATTTAAAATATT+GGG + chr2.2:21480452-21480471 None:intergenic 15.0%
!!! GTTATAACGATAAATTATTT+TGG + chr2.2:21480862-21480881 None:intergenic 15.0%
!!! TATGAAATCTTACAAAATTT+TGG + chr2.2:21477405-21477424 None:intergenic 15.0%
!! AAATTCTTCAATGTCAAAAA+TGG + chr2.2:21479432-21479451 None:intergenic 20.0%
!! AATTAATTGAAGAAGTAATG+AGG + chr2.2:21478772-21478791 None:intergenic 20.0%
!! CATTAATATAATTGTTACCT+TGG - chr2.2:21479543-21479562 MS.gene068674:intron 20.0%
!! TATTAAGAAAACTCTACAAT+AGG - chr2.2:21478339-21478358 MS.gene068674:intron 20.0%
!! TATTAATAGAATTCTCAAAC+AGG + chr2.2:21479914-21479933 None:intergenic 20.0%
!! TATTGTTATATGTTCTGTAT+TGG - chr2.2:21479043-21479062 MS.gene068674:intron 20.0%
!! TTAAGAAATTACTACTAATG+AGG + chr2.2:21480475-21480494 None:intergenic 20.0%
!!! ATCTTACAAAATTTTGGAAA+AGG + chr2.2:21477399-21477418 None:intergenic 20.0%
!!! GCAATGAGAATTTAAAATAT+TGG + chr2.2:21480453-21480472 None:intergenic 20.0%
!!! TAATTTGTTCGTTAAGATAA+CGG + chr2.2:21480899-21480918 None:intergenic 20.0%
!!! TATTGATAACTTGATCAATA+AGG - chr2.2:21479318-21479337 MS.gene068674:intron 20.0%
!!! TCTACATAATGAAATTTTCA+AGG - chr2.2:21479764-21479783 MS.gene068674:intron 20.0%
!!! TTTTCAATACGCTATTATTA+GGG - chr2.2:21479980-21479999 MS.gene068674:intron 20.0%
!!! TTTTTCAATACGCTATTATT+AGG - chr2.2:21479979-21479998 MS.gene068674:intron 20.0%
! AAATTATGCAATGTCTAGAT+TGG - chr2.2:21480913-21480932 MS.gene068674:intron 25.0%
! ATGGATAAAAACAAACTCAA+TGG - chr2.2:21478311-21478330 MS.gene068674:intron 25.0%
! CAAAGAATCATATTTACATG+AGG - chr2.2:21479245-21479264 MS.gene068674:CDS 25.0%
! CACTTGTCTTCTATAATATA+TGG - chr2.2:21480817-21480836 MS.gene068674:CDS 25.0%
! GAAAATAGCTTATTACATGT+CGG - chr2.2:21478716-21478735 MS.gene068674:intron 25.0%
! GTACAAAATGATAATTGAGA+CGG - chr2.2:21477923-21477942 MS.gene068674:intron 25.0%
! TCAAACGAATTTGATAAAGT+TGG + chr2.2:21480597-21480616 None:intergenic 25.0%
! TGTTAATGTGCTGAAAAATA+TGG - chr2.2:21477521-21477540 MS.gene068674:intron 25.0%
! TTGTCTTCTATAATATATGG+AGG - chr2.2:21480820-21480839 MS.gene068674:CDS 25.0%
!! ACAAAAGAAAACACTACTTT+TGG - chr2.2:21479728-21479747 MS.gene068674:intron 25.0%
!! ACATGATAGTGTAATTTGAT+TGG - chr2.2:21478647-21478666 MS.gene068674:intron 25.0%
!! ATTCTGTTCATTTTGTTAGA+AGG - chr2.2:21477756-21477775 MS.gene068674:intron 25.0%
!! CATTGTGTTTAAGATTAACA+GGG + chr2.2:21480695-21480714 None:intergenic 25.0%
!! GTAACATAATTTGGTAACTT+AGG + chr2.2:21477446-21477465 None:intergenic 25.0%
!! TTCTGTTCATTTTGTTAGAA+GGG - chr2.2:21477757-21477776 MS.gene068674:intron 25.0%
!! TTGACATTGAAGAATTTTGA+AGG - chr2.2:21479435-21479454 MS.gene068674:intron 25.0%
!! TTTTTGCATAGCACAATATT+TGG - chr2.2:21478686-21478705 MS.gene068674:intron 25.0%
!!! GCTTTTTCTTTAAATTCACT+TGG - chr2.2:21477693-21477712 MS.gene068674:intron 25.0%
!!! TGTTTTTGTTAATTTTGTGC+AGG - chr2.2:21479804-21479823 MS.gene068674:intron 25.0%
ACATGTCACTAAACACAAAA+TGG + chr2.2:21478423-21478442 None:intergenic 30.0%
AGAAAAAGCAATTATACCCT+CGG + chr2.2:21477682-21477701 None:intergenic 30.0%
ATATGGTTGACAAACATTAC+AGG - chr2.2:21477538-21477557 MS.gene068674:intron 30.0%
ATCTCTGCAAATATCTACAT+GGG + chr2.2:21478601-21478620 None:intergenic 30.0%
CATCAACAACTATGATAACT+TGG - chr2.2:21478186-21478205 MS.gene068674:CDS 30.0%
CATGTCACTAAACACAAAAT+GGG + chr2.2:21478422-21478441 None:intergenic 30.0%
CCTGTTAATCTTAAACACAA+TGG - chr2.2:21480693-21480712 MS.gene068674:intron 30.0%
CTGAATTCATAATTCTTGAG+TGG - chr2.2:21480653-21480672 MS.gene068674:intron 30.0%
GAATTCAAGTGAAGAAGAAA+TGG + chr2.2:21478998-21479017 None:intergenic 30.0%
GTACACCTAAATAAAGAACA+TGG + chr2.2:21479069-21479088 None:intergenic 30.0%
TCAAACTGTTTATCCAAACA+AGG - chr2.2:21478154-21478173 MS.gene068674:intron 30.0%
TCACATATAACTGGAAAAAG+CGG + chr2.2:21478949-21478968 None:intergenic 30.0%
TGTCGTAATAAAAGTTTGGT+CGG + chr2.2:21480799-21480818 None:intergenic 30.0%
TGTTATAGTGATTGCAATTG+TGG + chr2.2:21479280-21479299 None:intergenic 30.0%
TTCTTCAATGTCAAAAATGG+TGG + chr2.2:21479429-21479448 None:intergenic 30.0%
TTGACAAACATTACAGGTTT+AGG - chr2.2:21477544-21477563 MS.gene068674:intron 30.0%
! ATTCACTTGGATTTCTGAAA+TGG - chr2.2:21477706-21477725 MS.gene068674:intron 30.0%
! ATTGGCCATGTTCTTTATTT+AGG - chr2.2:21479061-21479080 MS.gene068674:intron 30.0%
! CAAGTGTCGTAATAAAAGTT+TGG + chr2.2:21480803-21480822 None:intergenic 30.0%
! CCATTGTGTTTAAGATTAAC+AGG + chr2.2:21480696-21480715 None:intergenic 30.0%
! GTTCTTTATTTAGGTGTACA+AGG - chr2.2:21479070-21479089 MS.gene068674:intron 30.0%
! TGATGAGTTTGAGTTAACAA+TGG - chr2.2:21481005-21481024 MS.gene068674:CDS 30.0%
! TTCTTAAAGTACCTCTTCTA+AGG + chr2.2:21480212-21480231 None:intergenic 30.0%
! TTGATGTAAATTTTGCAGCA+AGG - chr2.2:21480101-21480120 MS.gene068674:intron 30.0%
! TTGTGTTGCTGAAATTACTT+AGG - chr2.2:21480301-21480320 MS.gene068674:intron 30.0%
! TTTAGCTTATATTACCCTTC+TGG - chr2.2:21477824-21477843 MS.gene068674:intron 30.0%
! TTTTGTTGCTCACATATAAC+TGG + chr2.2:21478958-21478977 None:intergenic 30.0%
!! ATATTTACATGAGGTTGATG+CGG - chr2.2:21479254-21479273 MS.gene068674:CDS 30.0%
!!! AAGCTACATTTTGAAGCTTA+TGG + chr2.2:21478019-21478038 None:intergenic 30.0%
!!! CATCTGCTAGTTTTGATAAA+TGG - chr2.2:21478292-21478311 MS.gene068674:intron 30.0%
!!! GTACAATTTTTTTCTTGTGC+AGG - chr2.2:21478441-21478460 MS.gene068674:intron 30.0%
AACCAATATCAGTGAGTATG+AGG - chr2.2:21477283-21477302 MS.gene068674:CDS 35.0%
AACGAATTGAGCGAACAAAT+TGG + chr2.2:21479667-21479686 None:intergenic 35.0%
ACTCATCACGTAACATTTGA+AGG + chr2.2:21480993-21481012 None:intergenic 35.0%
ATAGCATGTAAGTATCCAGA+AGG + chr2.2:21477842-21477861 None:intergenic 35.0%
ATCATGCATGACATGAATTG+TGG - chr2.2:21477796-21477815 MS.gene068674:intron 35.0%
ATTGTTACCTTGGTCCATTT+AGG - chr2.2:21479553-21479572 MS.gene068674:intron 35.0%
CATCTCTGCAAATATCTACA+TGG + chr2.2:21478602-21478621 None:intergenic 35.0%
CATTCATGTAGTTAACGGTT+TGG - chr2.2:21480525-21480544 MS.gene068674:intron 35.0%
GAAAAAGCAATTATACCCTC+GGG + chr2.2:21477681-21477700 None:intergenic 35.0%
GTAATTTGATTGGATGCATG+CGG - chr2.2:21478657-21478676 MS.gene068674:intron 35.0%
GTAGGTGTACAAAACATCAA+AGG + chr2.2:21477480-21477499 None:intergenic 35.0%
GTCGTAATAAAAGTTTGGTC+GGG + chr2.2:21480798-21480817 None:intergenic 35.0%
TAGCATGTAAGTATCCAGAA+GGG + chr2.2:21477841-21477860 None:intergenic 35.0%
TATACTCACAAATATGCCAG+AGG + chr2.2:21480417-21480436 None:intergenic 35.0%
TCAGTGTAATAGCTTATCAG+TGG + chr2.2:21478230-21478249 None:intergenic 35.0%
TTATTTAGGTGTACAAGGAC+AGG - chr2.2:21479075-21479094 MS.gene068674:intron 35.0%
TTCCTCATACTCACTGATAT+TGG + chr2.2:21477288-21477307 None:intergenic 35.0%
TTCTTAATTCGGATCGTCTA+TGG - chr2.2:21480488-21480507 MS.gene068674:intron 35.0%
! TAAGATAACGGCAGTACTAA+TGG + chr2.2:21480887-21480906 None:intergenic 35.0%
! TCTTGGAGTATCAACAGTAA+GGG + chr2.2:21479156-21479175 None:intergenic 35.0%
!! AATTTTGAAGGACTGAACCT+TGG - chr2.2:21479447-21479466 MS.gene068674:CDS 35.0%
!! GAGTTAACAATGGCTTTAAG+TGG - chr2.2:21481015-21481034 MS.gene068674:CDS 35.0%
!! TCCAACTGCTTTTCAGAAAA+TGG - chr2.2:21477650-21477669 MS.gene068674:intron 35.0%
AAATTGATCGTACTCTGAGC+TGG - chr2.2:21479612-21479631 MS.gene068674:intron 40.0%
AACCATAAGTGCCTTAGAAG+AGG - chr2.2:21480198-21480217 MS.gene068674:intron 40.0%
AAGGCAGAAATTGCCAAAGA+TGG - chr2.2:21477313-21477332 MS.gene068674:CDS 40.0%
ACACCTCCATCCAAAAATAC+AGG + chr2.2:21480353-21480372 None:intergenic 40.0%
ACTGTTGATACTCCAAGACT+TGG - chr2.2:21479158-21479177 MS.gene068674:intron 40.0%
AGCCTTCCAATTCTTGTGAA+GGG - chr2.2:21479853-21479872 MS.gene068674:intron 40.0%
AGTACACCCTTCACAAGAAT+TGG + chr2.2:21479862-21479881 None:intergenic 40.0%
CGACGCATTCATGTAGTTAA+CGG - chr2.2:21480520-21480539 MS.gene068674:intron 40.0%
CTCACATCGATAAGAATTCG+CGG + chr2.2:21477570-21477589 None:intergenic 40.0%
CTTTCAGACGTTGTCATCAT+GGG - chr2.2:21478880-21478899 MS.gene068674:intron 40.0%
GAGAAGCTGATATCAAGAAC+AGG - chr2.2:21479186-21479205 MS.gene068674:intron 40.0%
GGAATTATTGTGTCCAACCA+CGG - chr2.2:21480148-21480167 MS.gene068674:intron 40.0%
GTAATAAAAGTTTGGTCGGG+AGG + chr2.2:21480795-21480814 None:intergenic 40.0%
GTGAGTATGAGGAAATTGCA+AGG - chr2.2:21477294-21477313 MS.gene068674:CDS 40.0%
TAGTAGTCAAACGCCATCTT+TGG + chr2.2:21477329-21477348 None:intergenic 40.0%
TCCATTTAGGCTAATGACTC+TGG - chr2.2:21479566-21479585 MS.gene068674:intron 40.0%
TCTTTCAGACGTTGTCATCA+TGG - chr2.2:21478879-21478898 MS.gene068674:intron 40.0%
TTACTTCGTCCATCTTTCCA+AGG + chr2.2:21479467-21479486 None:intergenic 40.0%
! AGGTCGTGTTCCTGTATTTT+TGG - chr2.2:21480340-21480359 MS.gene068674:intron 40.0%
! ATTTTGTGCAGGATGTGAAG+TGG - chr2.2:21479815-21479834 MS.gene068674:intron 40.0%
! GTCTTGGAGTATCAACAGTA+AGG + chr2.2:21479157-21479176 None:intergenic 40.0%
! GTTTTTGTTCTCAGAGTCGT+AGG + chr2.2:21477498-21477517 None:intergenic 40.0%
! TCATTAGCCTAAATGGACCA+AGG + chr2.2:21479563-21479582 None:intergenic 40.0%
! TCCAGAGTCATTAGCCTAAA+TGG + chr2.2:21479570-21479589 None:intergenic 40.0%
! TGTTTTCTTGAAGAGTCCAC+TGG + chr2.2:21477370-21477389 None:intergenic 40.0%
!! GCCATTTTCTGAAAAGCAGT+TGG + chr2.2:21477654-21477673 None:intergenic 40.0%
!! TACCTCTTCTAAGGCACTTA+TGG + chr2.2:21480203-21480222 None:intergenic 40.0%
!!! CGTGTTCCTGTATTTTTGGA+TGG - chr2.2:21480344-21480363 MS.gene068674:intron 40.0%
!!! GCATGGAAATTTTGAAGCCA+AGG + chr2.2:21477617-21477636 None:intergenic 40.0%
!!! GTTCCTGTATTTTTGGATGG+AGG - chr2.2:21480347-21480366 MS.gene068674:intron 40.0%
AACCGATGTCTTCAAGGCTT+TGG - chr2.2:21480382-21480401 MS.gene068674:intron 45.0%
AGGACTGAACCTTGGAAAGA+TGG - chr2.2:21479455-21479474 MS.gene068674:CDS 45.0%
ATCAGCTGCTGGAACAATCA+TGG - chr2.2:21478488-21478507 MS.gene068674:intron 45.0%
CAAGAACAGGTAACTCGTTG+CGG - chr2.2:21479199-21479218 MS.gene068674:CDS 45.0%
CACCCTTCACAAGAATTGGA+AGG + chr2.2:21479858-21479877 None:intergenic 45.0%
CAGATGCGCAATCAACACTT+TGG + chr2.2:21480636-21480655 None:intergenic 45.0%
CAGCCTTCCAATTCTTGTGA+AGG - chr2.2:21479852-21479871 MS.gene068674:intron 45.0%
CATAATCTTGGTATGGCACG+AGG + chr2.2:21481108-21481127 None:intergenic 45.0%
CTCCTGATTATTTCAGCCAG+AGG + chr2.2:21480749-21480768 None:intergenic 45.0%
CTTCACAAGAATTGGAAGGC+TGG + chr2.2:21479854-21479873 None:intergenic 45.0%
GACATGTCAACTACTGTCCT+TGG - chr2.2:21477597-21477616 MS.gene068674:intron 45.0%
GACCTCTGGCTGAAATAATC+AGG - chr2.2:21480744-21480763 MS.gene068674:CDS 45.0%
GAGTGATTTCCTTGAGTGAG+CGG + chr2.2:21481044-21481063 None:intergenic 45.0%
GCAGTTGGAGCAATCATGAT+TGG + chr2.2:21477639-21477658 None:intergenic 45.0%
GCGTTTGACTACTATGCATC+TGG - chr2.2:21477335-21477354 MS.gene068674:CDS 45.0%
GTGAGAAGAGCTGAAAAAGC+TGG - chr2.2:21479116-21479135 MS.gene068674:intron 45.0%
TAGGTTGTGAAAGCTGCTCA+AGG - chr2.2:21480320-21480339 MS.gene068674:intron 45.0%
TGCCAAAGCCTTGAAGACAT+CGG + chr2.2:21480387-21480406 None:intergenic 45.0%
TGGAGAAGCTGGTGTAAGAA+AGG - chr2.2:21480966-21480985 MS.gene068674:intron 45.0%
TGGAGCAATCATGATTGGCA+TGG + chr2.2:21477634-21477653 None:intergenic 45.0%
! AACTGGAAAAAGCGGATTCC+AGG + chr2.2:21478941-21478960 None:intergenic 45.0%
! AATCAAGTTGTCTTGCTCCG+TGG + chr2.2:21480168-21480187 None:intergenic 45.0%
! GAGCGAACAAATTGGTGACA+TGG + chr2.2:21479659-21479678 None:intergenic 45.0%
! GATAACGGCAGTACTAATGG+TGG + chr2.2:21480884-21480903 None:intergenic 45.0%
! GGACTTGCTTCATATGTTGC+TGG - chr2.2:21479587-21479606 MS.gene068674:intron 45.0%
! TCTAAGGCACTTATGGTTGC+TGG + chr2.2:21480196-21480215 None:intergenic 45.0%
! TGACCACATCGTTGCTGATT+GGG - chr2.2:21481065-21481084 MS.gene068674:CDS 45.0%
AAGTTGTCTTGCTCCGTGGT+TGG + chr2.2:21480164-21480183 None:intergenic 50.0%
ATGGCACGAGGATTAACACG+AGG + chr2.2:21481096-21481115 None:intergenic 50.0%
CAGAAAATGGCTCATCCCGA+GGG - chr2.2:21477663-21477682 MS.gene068674:intron 50.0%
CAGCCAGAGAATACACCACA+GGG + chr2.2:21480942-21480961 None:intergenic 50.0%
GTCGAAGAAGTTGCTTCCAC+TGG - chr2.2:21478914-21478933 MS.gene068674:intron 50.0%
GTGACCACATCGTTGCTGAT+TGG - chr2.2:21481064-21481083 MS.gene068674:CDS 50.0%
GTGTATTCTCTGGCTGCTGA+TGG - chr2.2:21480946-21480965 MS.gene068674:intron 50.0%
TAGTACCCTAGTTCGACCTC+TGG - chr2.2:21480730-21480749 MS.gene068674:CDS 50.0%
TCAGAAAATGGCTCATCCCG+AGG - chr2.2:21477662-21477681 MS.gene068674:intron 50.0%
TGATCGTACTCTGAGCTGGA+AGG - chr2.2:21479616-21479635 MS.gene068674:intron 50.0%
TGGCACGAGGATTAACACGA+GGG + chr2.2:21481095-21481114 None:intergenic 50.0%
TGTCCCAATCAGCAACGATG+TGG + chr2.2:21481071-21481090 None:intergenic 50.0%
TTCAGCCAGAGGTCGAACTA+GGG + chr2.2:21480738-21480757 None:intergenic 50.0%
TTTCAGCCAGAGGTCGAACT+AGG + chr2.2:21480739-21480758 None:intergenic 50.0%
! CTACTATGCATCTGGTGCTG+AGG - chr2.2:21477343-21477362 MS.gene068674:CDS 50.0%
! GATGTCACTAGCGCCTTGTT+TGG + chr2.2:21478170-21478189 None:intergenic 50.0%
! GTCTTCAAGGCTTTGGCACT+TGG - chr2.2:21480389-21480408 MS.gene068674:intron 50.0%
!! CCTTGAAGACATCGGTTCCA+CGG + chr2.2:21480379-21480398 None:intergenic 50.0%
AAGTGGATGCCGCTCACTCA+AGG - chr2.2:21481032-21481051 MS.gene068674:CDS 55.0%
ACGCCCTGTGGTGTATTCTC+TGG - chr2.2:21480936-21480955 MS.gene068674:intron 55.0%
CCGTGGAACCGATGTCTTCA+AGG - chr2.2:21480376-21480395 MS.gene068674:intron 55.0%
GAAGTTGCTTCCACTGGACC+TGG - chr2.2:21478920-21478939 MS.gene068674:CDS 55.0%
GCAAGGCTAGCAGTGCAAAG+TGG - chr2.2:21480118-21480137 MS.gene068674:intron 55.0%
GCAGCCAGAGAATACACCAC+AGG + chr2.2:21480943-21480962 None:intergenic 55.0%
GCTTCTCTGCGTCCAAGTCT+TGG + chr2.2:21479173-21479192 None:intergenic 55.0%
GGCACGAGGATTAACACGAG+GGG + chr2.2:21481094-21481113 None:intergenic 55.0%
TGTCTAGATTGGACGCCCTG+TGG - chr2.2:21480924-21480943 MS.gene068674:intron 55.0%
! AAAGCGGATTCCAGGTCCAG+TGG + chr2.2:21478933-21478952 None:intergenic 55.0%
! GAAGGGTGTACTCACTGCTG+AGG - chr2.2:21479870-21479889 MS.gene068674:intron 55.0%
CTGGCTGCTGATGGAGAAGC+TGG - chr2.2:21480955-21480974 MS.gene068674:intron 60.0%
GCAAGAGCTGCATCAGCTGC+TGG - chr2.2:21478477-21478496 MS.gene068674:intron 60.0%
GCAGTGCAAAGTGGTGCAGC+TGG - chr2.2:21480127-21480146 MS.gene068674:intron 60.0%
! CATCTGGTGCTGAGGACCAG+TGG - chr2.2:21477351-21477370 MS.gene068674:CDS 60.0%
! TTGGATGGAGGTGTACGCCG+TGG - chr2.2:21480359-21480378 MS.gene068674:intron 60.0%
!! GCTTTGGCACTTGGTGCCTC+TGG - chr2.2:21480398-21480417 MS.gene068674:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 21477272 21481128 21477272 ID=MS.gene068674
chr2.2 mRNA 21477272 21481128 21477272 ID=MS.gene068674.t1;Parent=MS.gene068674
chr2.2 exon 21480989 21481128 21480989 ID=MS.gene068674.t1.exon1;Parent=MS.gene068674.t1
chr2.2 CDS 21480989 21481128 21480989 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2 exon 21480716 21480840 21480716 ID=MS.gene068674.t1.exon2;Parent=MS.gene068674.t1
chr2.2 CDS 21480716 21480840 21480716 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2 exon 21479891 21479937 21479891 ID=MS.gene068674.t1.exon3;Parent=MS.gene068674.t1
chr2.2 CDS 21479891 21479937 21479891 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2 exon 21479436 21479513 21479436 ID=MS.gene068674.t1.exon4;Parent=MS.gene068674.t1
chr2.2 CDS 21479436 21479513 21479436 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2 exon 21479193 21479317 21479193 ID=MS.gene068674.t1.exon5;Parent=MS.gene068674.t1
chr2.2 CDS 21479193 21479317 21479193 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2 exon 21478918 21478984 21478918 ID=MS.gene068674.t1.exon6;Parent=MS.gene068674.t1
chr2.2 CDS 21478918 21478984 21478918 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2 exon 21478763 21478825 21478763 ID=MS.gene068674.t1.exon7;Parent=MS.gene068674.t1
chr2.2 CDS 21478763 21478825 21478763 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2 exon 21478505 21478574 21478505 ID=MS.gene068674.t1.exon8;Parent=MS.gene068674.t1
chr2.2 CDS 21478505 21478574 21478505 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2 exon 21478181 21478281 21478181 ID=MS.gene068674.t1.exon9;Parent=MS.gene068674.t1
chr2.2 CDS 21478181 21478281 21478181 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2 exon 21477973 21478077 21477973 ID=MS.gene068674.t1.exon10;Parent=MS.gene068674.t1
chr2.2 CDS 21477973 21478077 21477973 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
chr2.2 exon 21477272 21477469 21477272 ID=MS.gene068674.t1.exon11;Parent=MS.gene068674.t1
chr2.2 CDS 21477272 21477469 21477272 ID=cds.MS.gene068674.t1;Parent=MS.gene068674.t1
Gene Sequence

>MS.gene068674

ATGGGAGAGATAACCAATATCAGTGAGTATGAGGAAATTGCAAGGCAGAAATTGCCAAAGATGGCGTTTGACTACTATGCATCTGGTGCTGAGGACCAGTGGACTCTTCAAGAAAACAGAAATGCCTTTTCCAAAATTTTGTAAGATTTCATATAACTTATTTTGACAGTTCCTAAGTTACCAAATTATGTTACTTTATTATGTTCCTTTGATGTTTTGTACACCTACGACTCTGAGAACAAAAACAAATGTTAATGTGCTGAAAAATATGGTTGACAAACATTACAGGTTTAGGCCGCGAATTCTTATCGATGTGAGCAAGATAGACATGTCAACTACTGTCCTTGGCTTCAAAATTTCCATGCCAATCATGATTGCTCCAACTGCTTTTCAGAAAATGGCTCATCCCGAGGGTATAATTGCTTTTTCTTTAAATTCACTTGGATTTCTGAAATGGAAAATGAAGTTGTTTTGTTTTTGCAATATTCTGTTCATTTTGTTAGAAGGGAAAAAAATCATGAAAAATCATGCATGACATGAATTGTGGAGAGTTTTAGCTTATATTACCCTTCTGGATACTTACATGCTATGAAAATGATTACTATAAGCATTTGTGAGACTATTTAGAAACAACTTATCTACTTGATTTATGTACAAAATGATAATTGAGACGGAGATCATTAAGTTTATCTGTGCTTATCAAAACAACTTATGATATGTTTATATGTTGTTTTTAGCTTATTTCCATAAGCTTCAAAATGTAGCTTATGAAAACAGCTTAGAGCTTAAATGAAAGTAATTTGACTTTATTTTATCTTTTGTTATAGAAATAACATATACACGAACACTGATACGATAAATGTTTATGCTTTACGCACTTACTCAAACTGTTTATCCAAACAAGGCGCTAGTGACATCAACAACTATGATAACTTGGTTTCTAGTTGTGTAACTTCCACTGATAAGCTATTACACTGAAATTAAGTGTGAATAAACATTAGTAATTCTTAAAAAAAATATCATCTGCTAGTTTTGATAAATGGATAAAAACAAACTCAATGGTTTTTTATTAAGAAAACTCTACAATAGGATAGCAACATGAGATTTAAATTGTCGATGTTCTTGTATTATATATTATATTTCAAATCCCATTTTGTGTTTAGTGACATGTACAATTTTTTTCTTGTGCAGGAGAATATGCAACAGCAAGAGCTGCATCAGCTGCTGGAACAATCATGGTACTTCTCTTCCTATTTTTGTAATAAACATTTGATTTGTATACACTGTCATATAAAACATTTTTACACATGCGTTCAATCAAATCTTCCCATGTAGATATTTGCAGAGATGTTTTAGAAACAAACAAAACTAAGTGACATGATAGTGTAATTTGATTGGATGCATGCGGAAACAATTTTTGCATAGCACAATATTTGGAAAAAATGAAAATAGCTTATTACATGTCGGTAAAGTGTTTTTAGCATATGTAGAGTTTATCCTCATTACTTCTTCAATTAATTCTAAAATCAGAAAACACATAAGCTCTTATACGATTAACACTTATTTAACTGTATATTCAAATCAGTTACTTCAATTAACTTGTTGATTCTTTCAGACGTTGTCATCATGGGCGACTTCAAGTGTCGAAGAAGTTGCTTCCACTGGACCTGGAATCCGCTTTTTCCAGTTATATGTGAGCAACAAAAACATTATTCTCTCAGTTCCATTTCTTCTTCACTTGAATTCTACGAGAAATAGTTCGTTTCTCTTATATTGTTATATGTTCTGTATTGGCCATGTTCTTTATTTAGGTGTACAAGGACAGGAATGTTGTTGCTCAGCTTGTGAGAAGAGCTGAAAAAGCTGGATTCAAAGCTATTGCCCTTACTGTTGATACTCCAAGACTTGGACGCAGAGAAGCTGATATCAAGAACAGGTAACTCGTTGCGGCTGTGTTGTGATTCTTAATATTGCAAAGAATCATATTTACATGAGGTTGATGCGGCCACAATTGCAATCACTATAACATAACTGAAATATCGCATTTATTGATAACTTGATCAATAAGGAATACAATAGACTCTATTTATACATGAGTTTCAGCTTTAATGTAATAAAGATTAATTATAAATTTTCTTTTACAGATTTGTTCTGCCACCATTTTTGACATTGAAGAATTTTGAAGGACTGAACCTTGGAAAGATGGACGAAGTAAGTGAGATCAATTATTACAAAATTAGTAACATAGTTTAATGGTCTTACCTCTATCATCATTAATATAATTGTTACCTTGGTCCATTTAGGCTAATGACTCTGGACTTGCTTCATATGTTGCTGGTCAAATTGATCGTACTCTGAGCTGGAAGGTATGTTACAAGTAAAATCCATGTCACCAATTTGTTCGCTCAATTCGTTGTTTTTGATTGATAAGTAGCATGCATGCTGACATTAGAAAAACAAAAGAAAACACTACTTTTGGTTGTCATTTTTAGTCTACATAATGAAATTTTCAAGGTTACAATGATTTAGTGTTGTTTTTGTTAATTTTGTGCAGGATGTGAAGTGGCTTCAGACTATCACCAGCCTTCCAATTCTTGTGAAGGGTGTACTCACTGCTGAGGATAGTAAGCAAAACAAAACCTGTTTGAGAATTCTATTAATACACTTTCTAACACATTTTTTTCGATACACTGTTATATTTAACACTTTTTTCAATACGCTATTATTAGGGTCTCACATACATTATTTCATATAAAAGAAGTGATTACAACTAATTCACATAATTTAGTGAACTATAGATGAATTTTTTACGATTATTTTATTAATGGTTTGATGTAAATTTTGCAGCAAGGCTAGCAGTGCAAAGTGGTGCAGCTGGAATTATTGTGTCCAACCACGGAGCAAGACAACTTGATTATGTTCCAGCAACCATAAGTGCCTTAGAAGAGGTACTTTAAGAATGTCAAGTTATTATATAACTGAATTAATTGTATAAATCATTCTACATAATAAGATTGTTTATATCATAATTGTGTTGCTGAAATTACTTAGGTTGTGAAAGCTGCTCAAGGTCGTGTTCCTGTATTTTTGGATGGAGGTGTACGCCGTGGAACCGATGTCTTCAAGGCTTTGGCACTTGGTGCCTCTGGCATATTTGTGAGTATACTCATAGCATTTCCCAATATTTTAAATTCTCATTGCCTCATTAGTAGTAATTTCTTAATTCGGATCGTCTATGGTCACAGTGTCGACGCATTCATGTAGTTAACGGTTTGGAGCTGTTGTGACTCTTATTTTAAGCTCTCTAAGTCAATCATAAAAGCCAACTTTATCAAATTCGTTTGATTTTGATCAAACATCTCCAAAGTGTTGATTGCGCATCTGAATTCATAATTCTTGAGTGGCTATAGTATCTATGAACCCTGTTAATCTTAAACACAATGGTTGAAATATGCGAGTAGTACCCTAGTTCGACCTCTGGCTGAAATAATCAGGAGTAATCATTGATCAACTTAATTTACCTCCCGACCAAACTTTTATTACGACACTTGTCTTCTATAATATATGGAGGATTAAGACGAACAAAACCAAAATAATTTATCGTTATAACCACCATTAGTACTGCCGTTATCTTAACGAACAAATTATGCAATGTCTAGATTGGACGCCCTGTGGTGTATTCTCTGGCTGCTGATGGAGAAGCTGGTGTAAGAAAGGTCCTTCAAATGTTACGTGATGAGTTTGAGTTAACAATGGCTTTAAGTGGATGCCGCTCACTCAAGGAAATCACTCGTGACCACATCGTTGCTGATTGGGACACCCCTCGTGTTAATCCTCGTGCCATACCAAGATTATGA

Protein sequence

>MS.gene068674.t1

MGEITNISEYEEIARQKLPKMAFDYYASGAEDQWTLQENRNAFSKILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLNLGKMDEANDSGLASYVAGQIDRTLSWKDVKWLQTITSLPILVKGVLTAEDTRLAVQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAADGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRDHIVADWDTPRVNPRAIPRL