AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82917


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82917.t1 MTR_6g007030 98.148 432 8 0 1 432 1 432 0.0 847
MS.gene82917.t1 MTR_6g011810 50.152 329 149 5 115 429 130 457 7.69e-96 295
MS.gene82917.t1 MTR_2g019140 47.391 230 99 5 115 323 90 318 1.06e-56 190
MS.gene82917.t1 MTR_7g113170 30.351 313 174 10 128 418 128 418 9.57e-33 128
MS.gene82917.t1 MTR_7g113170 34.061 229 128 7 128 343 128 346 5.99e-32 125
MS.gene82917.t1 MTR_2g019140 44.000 150 65 3 115 245 90 239 5.10e-30 117
MS.gene82917.t1 MTR_6g007020 80.000 50 6 1 363 408 47 96 2.33e-16 75.5
MS.gene82917.t1 MTR_1g088980 30.035 283 172 11 161 428 141 412 5.05e-16 80.5
MS.gene82917.t1 MTR_6g004110 29.934 304 168 16 147 427 106 387 7.55e-14 73.9
MS.gene82917.t1 MTR_6g004110 30.233 301 165 16 150 427 2 280 1.80e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82917.t1 AT3G27925 88.556 367 40 1 68 432 73 439 0.0 650
MS.gene82917.t1 AT3G27925 88.556 367 40 1 68 432 73 439 0.0 650
MS.gene82917.t1 AT5G39830 50.760 329 147 3 115 429 120 447 2.77e-96 296
MS.gene82917.t1 AT5G39830 48.328 329 141 4 115 429 120 433 2.35e-86 270
MS.gene82917.t1 AT4G18370 49.130 230 99 5 115 327 92 320 2.70e-59 197
MS.gene82917.t1 AT4G18370 46.857 175 77 4 114 273 91 264 5.51e-40 144
MS.gene82917.t1 AT5G27660 32.166 314 168 9 143 428 133 429 2.23e-33 130
MS.gene82917.t1 AT5G27660 32.166 314 162 10 143 428 128 418 2.76e-31 124
MS.gene82917.t1 AT4G18370 45.139 144 64 3 115 243 92 235 2.24e-30 117
MS.gene82917.t1 AT2G47940 28.297 364 199 14 103 428 86 425 4.07e-18 87.0
MS.gene82917.t1 AT2G47940 28.297 364 199 14 103 428 85 424 4.25e-18 87.0
MS.gene82917.t1 AT5G40200 28.889 270 165 13 161 414 164 422 5.58e-11 65.1

Find 105 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGGTTCCTCAGGGATC+TGG 0.232760 6.1:-2525464 MS.gene82917:CDS
TCACCAATTATCATGTTATC+AGG 0.249166 6.1:-2525406 MS.gene82917:CDS
ACCCCTGATAACATGATAAT+TGG 0.283190 6.1:+2525403 None:intergenic
AACATCTGTGAATGGTAATA+AGG 0.295684 6.1:-2522831 MS.gene82917:CDS
GTTGATCAATTGGTGAAGTT+TGG 0.310545 6.1:-2523530 MS.gene82917:CDS
GCTCCTGCCACTGGTCCAGC+TGG 0.312294 6.1:-2523419 MS.gene82917:CDS
GTCAGAAAGTGTTTGCTATT+GGG 0.343361 6.1:-2524303 MS.gene82917:CDS
CGCTTACAACTGGAGTTATC+AGG 0.345355 6.1:-2524134 MS.gene82917:intron
ATCTGGGTCAGGTTTCGTTT+GGG 0.345654 6.1:-2525447 MS.gene82917:CDS
AGATCAATCTGTGGAGCAAT+TGG 0.346124 6.1:-2523468 MS.gene82917:CDS
GTCTCTGCTGACTTGCTTGT+TGG 0.352804 6.1:-2524325 MS.gene82917:CDS
GTTCCTCAGGGATCTGGGTC+AGG 0.354730 6.1:-2525458 MS.gene82917:CDS
GGATGTGTTGGAGGTTCCTC+AGG 0.362434 6.1:-2525471 MS.gene82917:CDS
ATTGGCCTGAGCTTGTCTTT+AGG 0.367903 6.1:+2524358 None:intergenic
GTCAGGTTTCGTTTGGGATA+AGG 0.380706 6.1:-2525441 MS.gene82917:CDS
GATCTGGGTCAGGTTTCGTT+TGG 0.381779 6.1:-2525448 MS.gene82917:CDS
GGGCCACTCCTAGATAGTTC+TGG 0.384530 6.1:-2523921 MS.gene82917:CDS
GAAATTAGTTCGGCTGCAAC+TGG 0.387158 6.1:-2524002 MS.gene82917:CDS
GCAAACTTGATTCCTAATAT+AGG 0.388647 6.1:+2523494 None:intergenic
GTGATGAAGATGAAGAGATT+TGG 0.395888 6.1:+2527065 None:intergenic
TGATGAAGATGAAGAGATTT+GGG 0.396564 6.1:+2527066 None:intergenic
AATGGTAATAAGGTTTCTAA+TGG 0.407424 6.1:-2522821 MS.gene82917:CDS
GATAGTTCTGGAAACCTCAT+TGG 0.407887 6.1:-2523909 MS.gene82917:CDS
ACCTACGATGCAAAAGTTGT+TGG 0.408508 6.1:-2524424 MS.gene82917:CDS
GGTCAGAAAGTGTTTGCTAT+TGG 0.408657 6.1:-2524304 MS.gene82917:CDS
GTCTTGGATGCTCCTGCCAC+TGG 0.408824 6.1:-2523428 MS.gene82917:CDS
TCATCAGACTGCAGCTTCCT+AGG 0.412956 6.1:+2526841 None:intergenic
CTAGATCACACGCTTACAAC+TGG 0.413765 6.1:-2524144 MS.gene82917:CDS
CATCATGTTTCGTCGGCCTT+CGG 0.417029 6.1:+2521942 None:intergenic
TTCCCAGCTGGACCAGTGGC+AGG 0.417611 6.1:+2523416 None:intergenic
TTGATCAATTGGTGAAGTTT+GGG 0.427297 6.1:-2523529 MS.gene82917:CDS
TCTCCATCTGGTGCATCCTC+TGG 0.434161 6.1:-2523867 MS.gene82917:CDS
TCAGGGGTGCTTCGGATCTC+AGG 0.437066 6.1:-2525388 MS.gene82917:intron
TGAGGTTTCCAGAACTATCT+AGG 0.437219 6.1:+2523913 None:intergenic
GCCTTCGGCTCGAGAATGAC+GGG 0.437571 6.1:+2521957 None:intergenic
CAATGGCATTGTTGATCAAT+TGG 0.442333 6.1:-2523540 MS.gene82917:CDS
TCATGTTATCAGGGGTGCTT+CGG 0.445830 6.1:-2525396 MS.gene82917:CDS
AAACTTACTGCTTTCCCAGC+TGG 0.448518 6.1:+2523404 None:intergenic
CATCAGTCTGTATAACATCT+TGG 0.450735 6.1:+2523970 None:intergenic
TGGAGGTTCCTCAGGGATCT+GGG 0.453594 6.1:-2525463 MS.gene82917:CDS
GATTGAAGAGCGAGGGAATG+AGG 0.454350 6.1:+2527095 None:intergenic
GGGGTGTAGGAGGAAAAGGG+TGG 0.455201 6.1:+2527017 None:intergenic
AAGGTTACTAGACCTATATT+AGG 0.456851 6.1:-2523506 MS.gene82917:CDS
TGCGTTTACTTTGGATGTGT+TGG 0.458605 6.1:-2525483 MS.gene82917:CDS
TCTGGTGCATCCTCTGGTGT+TGG 0.464380 6.1:-2523861 MS.gene82917:CDS
GGTGTAGGAGGAAAAGGGTG+GGG 0.464956 6.1:+2527019 None:intergenic
ATTCTTGACCAATGTAAAGT+TGG 0.472847 6.1:-2522782 MS.gene82917:CDS
CACCAATTATCATGTTATCA+GGG 0.476557 6.1:-2525405 MS.gene82917:CDS
TGAAGAGGAAGAAGAAGCTA+TGG 0.476692 6.1:+2527146 None:intergenic
CCAATGTAAAGTTGGTGATA+AGG 0.479540 6.1:-2522774 MS.gene82917:intron
TAGGCAGGATGCGTTTACTT+TGG 0.485183 6.1:-2525492 MS.gene82917:CDS
GCAGAGACACCAACAGGTAT+TGG 0.491987 6.1:+2524340 None:intergenic
AATTGCTCCACAGATTGATC+TGG 0.493425 6.1:+2523470 None:intergenic
AAACCTCATTGGGATAAATA+CGG 0.500616 6.1:-2523898 MS.gene82917:CDS
AGTGGCCCTCCGCTGTTACC+AGG 0.502512 6.1:+2523936 None:intergenic
ATAGTTCTGGAAACCTCATT+GGG 0.505914 6.1:-2523908 MS.gene82917:CDS
GTGGAGCAATTGGGAGTAAG+TGG 0.506145 6.1:-2523458 MS.gene82917:CDS
GATCAATCTGTGGAGCAATT+GGG 0.509374 6.1:-2523467 MS.gene82917:CDS
ACGGCTATATACTCTCCATC+TGG 0.514727 6.1:-2523879 MS.gene82917:CDS
AAGTCAGCAGAGACACCAAC+AGG 0.516720 6.1:+2524334 None:intergenic
TGCTTTCCCAGCTGGACCAG+TGG 0.520522 6.1:+2523412 None:intergenic
GGCCTTCGGCTCGAGAATGA+CGG 0.522075 6.1:+2521956 None:intergenic
AGTAAGTGGAGTGCTTGTCT+TGG 0.523157 6.1:-2523444 MS.gene82917:CDS
TGTTGATATTCAGGTGATTG+TGG 0.527659 6.1:-2522012 MS.gene82917:intron
ACGCGCCTAAAGACAAGCTC+AGG 0.529953 6.1:-2524363 MS.gene82917:CDS
TCAACAAAGCGTGATTCCTA+TGG 0.532445 6.1:-2522878 MS.gene82917:CDS
CCCCGTCATTCTCGAGCCGA+AGG 0.534511 6.1:-2521958 MS.gene82917:CDS
GCACAGCAACATCCTTGTCT+TGG 0.543843 6.1:+2524395 None:intergenic
CCTTATCACCAACTTTACAT+TGG 0.546658 6.1:+2522774 None:intergenic
GTTTACTTTGGATGTGTTGG+AGG 0.547964 6.1:-2525480 MS.gene82917:CDS
GACATCATAACATCTGTGAA+TGG 0.547970 6.1:-2522839 MS.gene82917:CDS
GAATGTGGAAATGAGTGAAG+AGG 0.548178 6.1:+2527131 None:intergenic
AAGATGAAGAGATTTGGGCT+TGG 0.554918 6.1:+2527071 None:intergenic
GGGTGTAGGAGGAAAAGGGT+GGG 0.555938 6.1:+2527018 None:intergenic
CTCCTGCCACTGGTCCAGCT+GGG 0.560697 6.1:-2523418 MS.gene82917:CDS
TCAGAGCTCACAGTATCGAC+AGG 0.563331 6.1:+2523828 None:intergenic
ACTGATGCAGCAATTAATCC+TGG 0.563387 6.1:-2523954 MS.gene82917:CDS
GATGTGTTGGAGGTTCCTCA+GGG 0.571176 6.1:-2525470 MS.gene82917:CDS
GGAAGAGTTGAAGAAGAATG+TGG 0.571372 6.1:+2527116 None:intergenic
TAGCCGTATTTATCCCAATG+AGG 0.585080 6.1:+2523895 None:intergenic
TCAATTGGTGAAGTTTGGGA+AGG 0.586725 6.1:-2523525 MS.gene82917:CDS
AGTGTTTGCTATTGGGAACC+CGG 0.591432 6.1:-2524296 MS.gene82917:intron
TTTCTCAAAATAGTGGACTT+CGG 0.593026 6.1:-2524028 MS.gene82917:intron
ACACCAGAGGATGCACCAGA+TGG 0.595755 6.1:+2523864 None:intergenic
AAGAAACTTACTTAACAGCA+AGG 0.597017 6.1:+2526761 None:intergenic
TTAGTTATATAAACAACAGA+AGG 0.597978 6.1:+2526784 None:intergenic
ACTTCGGCGAGAAATTAGTT+CGG 0.598072 6.1:-2524012 MS.gene82917:CDS
AGTTGCACATCATGTTTCGT+CGG 0.599114 6.1:+2521935 None:intergenic
ATTAATCCTGGTAACAGCGG+AGG 0.605722 6.1:-2523942 MS.gene82917:CDS
TTAATCCTGGTAACAGCGGA+GGG 0.614211 6.1:-2523941 MS.gene82917:CDS
GGTTTCGTTTGGGATAAGGA+TGG 0.615453 6.1:-2525437 MS.gene82917:CDS
GCTTGGTGATTGAAGAGCGA+GGG 0.622308 6.1:+2527088 None:intergenic
ACCAATTATCATGTTATCAG+GGG 0.625604 6.1:-2525404 MS.gene82917:CDS
GTCTGTATAACATCTTGGAT+AGG 0.626706 6.1:+2523975 None:intergenic
ACCTAAAATGAGTCTACCAT+AGG 0.641419 6.1:+2522862 None:intergenic
AAGCTCAGGCCAATACCTGT+TGG 0.645438 6.1:-2524349 MS.gene82917:CDS
CCTTCGGCTCGAGAATGACG+GGG 0.652759 6.1:+2521958 None:intergenic
GGCTTGGTGATTGAAGAGCG+AGG 0.669376 6.1:+2527087 None:intergenic
GGGTGAGAAAGTAAGTGAGT+TGG 0.670662 6.1:+2527039 None:intergenic
AATAGAAAATCCAACACCAG+AGG 0.677123 6.1:+2523851 None:intergenic
TTTCCAGAACTATCTAGGAG+TGG 0.677655 6.1:+2523918 None:intergenic
GCAATTAATCCTGGTAACAG+CGG 0.687109 6.1:-2523945 MS.gene82917:CDS
GTTTGCTCCAGATCAATCTG+TGG 0.693801 6.1:-2523477 MS.gene82917:CDS
GTGATTGTGGAAGTGTTGCG+AGG 0.708457 6.1:-2521999 MS.gene82917:CDS
AAACCTGACCCAGATCCCTG+AGG 0.760209 6.1:+2525455 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTTATATATTT+AGG - chr6.1:2525530-2525549 MS.gene82917:intron 0.0%
!! TATAACAAAAATCATAAAAA+TGG + chr6.1:2526622-2526641 None:intergenic 10.0%
!! AAAAAATAAACGATTTACTT+TGG - chr6.1:2523168-2523187 MS.gene82917:intron 15.0%
!! AAAAATAAACGATTTACTTT+GGG - chr6.1:2523169-2523188 MS.gene82917:intron 15.0%
!! AAACATTAAATAAAGTTCAA+CGG - chr6.1:2526812-2526831 MS.gene82917:CDS 15.0%
!! AAAGATTTAGATTAATGATT+TGG - chr6.1:2522490-2522509 MS.gene82917:intron 15.0%
!! AAATAAGATGAAAATATGTA+TGG - chr6.1:2526887-2526906 MS.gene82917:CDS 15.0%
!! AAATTTATTCTTATAGAGTT+AGG - chr6.1:2525746-2525765 MS.gene82917:intron 15.0%
!! TAAACTTAAAATCAAGAAAT+TGG - chr6.1:2524116-2524135 MS.gene82917:intron 15.0%
!! TAAATTTCTATTATGTTGTA+GGG - chr6.1:2526186-2526205 MS.gene82917:intron 15.0%
!! TTAAATTTCTATTATGTTGT+AGG - chr6.1:2526185-2526204 MS.gene82917:intron 15.0%
!!! AAAATTGATTTTGTTATGTT+TGG - chr6.1:2523331-2523350 MS.gene82917:intron 15.0%
!!! ACTATTTTTATAAGCTATTA+TGG - chr6.1:2523911-2523930 MS.gene82917:CDS 15.0%
!!! ATTTTATATATTTAGGTCAA+TGG - chr6.1:2525537-2525556 MS.gene82917:intron 15.0%
!!! CAATTTTACTAAATCAATTT+TGG + chr6.1:2522615-2522634 None:intergenic 15.0%
!!! CTATTTTTATAAGCTATTAT+GGG - chr6.1:2523912-2523931 MS.gene82917:CDS 15.0%
!!! TATTTTTATAAGCTATTATG+GGG - chr6.1:2523913-2523932 MS.gene82917:CDS 15.0%
!!! TCTATTTTCTTTAACTTTTT+GGG + chr6.1:2526995-2527014 None:intergenic 15.0%
!!! TGAAGATTTAAAATTGATTT+TGG - chr6.1:2522657-2522676 MS.gene82917:intron 15.0%
!!! TTATGATTTTTGTTATATCT+CGG - chr6.1:2526625-2526644 MS.gene82917:intron 15.0%
!!! TTCTATTTTCTTTAACTTTT+TGG + chr6.1:2526996-2527015 None:intergenic 15.0%
!!! TTTGATTACAAATTTTTCAA+GGG - chr6.1:2526137-2526156 MS.gene82917:intron 15.0%
!!! TTTTAGTAAAAGTAAGATTA+AGG + chr6.1:2522837-2522856 None:intergenic 15.0%
!! AAACAAAAAGAAGATGATAA+TGG - chr6.1:2524244-2524263 MS.gene82917:intron 20.0%
!! AAACACATTAGAATTGATTA+TGG + chr6.1:2523229-2523248 None:intergenic 20.0%
!! AACATGTCAAAAATCAAATT+TGG + chr6.1:2523256-2523275 None:intergenic 20.0%
!! AACATTCATAAAAACCAAAA+GGG + chr6.1:2522401-2522420 None:intergenic 20.0%
!! AACTTAAATTTGTATGTATC+TGG - chr6.1:2523764-2523783 MS.gene82917:intron 20.0%
!! AAGGTAAAATGATTTACTTT+GGG + chr6.1:2522818-2522837 None:intergenic 20.0%
!! AATTAATCAAACAACTTATC+AGG - chr6.1:2523798-2523817 MS.gene82917:intron 20.0%
!! ACTTAAATTTGTATGTATCT+GGG - chr6.1:2523765-2523784 MS.gene82917:intron 20.0%
!! ATGATAAAAACTTATGCTAT+AGG + chr6.1:2523875-2523894 None:intergenic 20.0%
!! ATTAATCAAACAACTTATCA+GGG - chr6.1:2523799-2523818 MS.gene82917:intron 20.0%
!! ATTATAACTTACAAGTACTT+AGG + chr6.1:2524060-2524079 None:intergenic 20.0%
!! CTTTCTTAATAGTTACAAAA+GGG + chr6.1:2522474-2522493 None:intergenic 20.0%
!! TAAAACATTTGTATAAAGAG+AGG + chr6.1:2525298-2525317 None:intergenic 20.0%
!! TAAGGTAAAATGATTTACTT+TGG + chr6.1:2522819-2522838 None:intergenic 20.0%
!! TATCAGTGCATTAAATTAAA+TGG + chr6.1:2524162-2524181 None:intergenic 20.0%
!! TCTTTCTTAATAGTTACAAA+AGG + chr6.1:2522475-2522494 None:intergenic 20.0%
!! TTAGGCAATATTATAGATTA+AGG + chr6.1:2524225-2524244 None:intergenic 20.0%
!! TTAGTTATATAAACAACAGA+AGG + chr6.1:2522313-2522332 None:intergenic 20.0%
!!! AAAAATTTGACTCTTTTCTT+AGG + chr6.1:2525034-2525053 None:intergenic 20.0%
!!! AAAATTGATTTTGGTATGTT+TGG - chr6.1:2522666-2522685 MS.gene82917:intron 20.0%
!!! AAATGTTTTAAAAACTGAAC+CGG - chr6.1:2525308-2525327 MS.gene82917:intron 20.0%
!!! AATTTTAGTTTGAGTTTCTA+CGG + chr6.1:2527026-2527045 None:intergenic 20.0%
!!! ATTATTTGATTTTTGCAGTT+TGG - chr6.1:2524926-2524945 MS.gene82917:intron 20.0%
!!! CAAGAAATTGGATATTTTAT+TGG - chr6.1:2524128-2524147 MS.gene82917:intron 20.0%
!!! CAATTGTACTAAATCAATTT+TGG + chr6.1:2522982-2523001 None:intergenic 20.0%
!!! GATTTAGTAAAATTGATTCT+AGG - chr6.1:2522620-2522639 MS.gene82917:intron 20.0%
!!! GATTTTGAATAAATTGATTC+AGG + chr6.1:2523534-2523553 None:intergenic 20.0%
!!! GTTTGATTACAAATTTTTCA+AGG - chr6.1:2526136-2526155 MS.gene82917:intron 20.0%
!!! TATCATCTTCTTTTTGTTTT+AGG + chr6.1:2524243-2524262 None:intergenic 20.0%
!!! TATGATTTTTGTTATATCTC+GGG - chr6.1:2526626-2526645 MS.gene82917:intron 20.0%
!!! TGATTTTGTAACATTTATTC+TGG - chr6.1:2523084-2523103 MS.gene82917:intron 20.0%
!!! TTTGTTGTATACTTAATCAA+AGG - chr6.1:2524079-2524098 MS.gene82917:intron 20.0%
! AAGCATTAAGAAAAACAAGA+GGG + chr6.1:2522952-2522971 None:intergenic 25.0%
! AAGGTAAAGTGATTTATGTT+AGG - chr6.1:2523122-2523141 MS.gene82917:intron 25.0%
! AATGGTAATAAGGTTTCTAA+TGG - chr6.1:2526273-2526292 MS.gene82917:intron 25.0%
! AATTGGTTATGTTGATATTC+AGG - chr6.1:2527073-2527092 MS.gene82917:CDS 25.0%
! ACATAACCAATTATGAAACT+AGG + chr6.1:2527065-2527084 None:intergenic 25.0%
! ATACATGTTTCTCAAAATAG+TGG - chr6.1:2525059-2525078 MS.gene82917:intron 25.0%
! ATATGGTTAGGAAATATTAC+CGG + chr6.1:2524820-2524839 None:intergenic 25.0%
! CAAATTTATCTCACTAAGTA+GGG + chr6.1:2522571-2522590 None:intergenic 25.0%
! CAACATTCATAAAAACCAAA+AGG + chr6.1:2522402-2522421 None:intergenic 25.0%
! CATCAAAAGAAGAAAAATCA+AGG + chr6.1:2522904-2522923 None:intergenic 25.0%
! GAAAACAGCTTATATCAAAA+TGG + chr6.1:2525863-2525882 None:intergenic 25.0%
! GACTTATTTGAACTTAACTA+TGG + chr6.1:2524013-2524032 None:intergenic 25.0%
! GTAATATTTCCTAACCATAT+TGG - chr6.1:2524820-2524839 MS.gene82917:intron 25.0%
! TATTCTCTATGAAATTTCCA+TGG - chr6.1:2524865-2524884 MS.gene82917:intron 25.0%
! TCAAATTTATCTCACTAAGT+AGG + chr6.1:2522572-2522591 None:intergenic 25.0%
! TGTTAACCTAGTTTCATAAT+TGG - chr6.1:2527056-2527075 MS.gene82917:CDS 25.0%
! TTAATCAAACAACTTATCAG+GGG - chr6.1:2523800-2523819 MS.gene82917:intron 25.0%
! TTCAAGAGAATAAAGAAAGA+CGG + chr6.1:2525503-2525522 None:intergenic 25.0%
! TTTAATGTGTGTATGTGTTT+AGG - chr6.1:2523583-2523602 MS.gene82917:intron 25.0%
!! ATCAAAGTAAAGAGACTTTT+TGG + chr6.1:2526028-2526047 None:intergenic 25.0%
!! GCAATTTTCATAAGTTATCA+TGG - chr6.1:2526853-2526872 MS.gene82917:CDS 25.0%
!! GTTTTTATCATTCAAGTGTT+TGG - chr6.1:2523884-2523903 MS.gene82917:CDS 25.0%
!! TCAAAGTAAAGAGACTTTTT+GGG + chr6.1:2526027-2526046 None:intergenic 25.0%
!! TTATTGAATAAAGGCATGTT+TGG - chr6.1:2523829-2523848 MS.gene82917:intron 25.0%
!! TTGATTCTTTTGATCGAAAA+AGG - chr6.1:2523496-2523515 MS.gene82917:CDS 25.0%
!! TTTGATTGTTGTTGTATGTT+TGG - chr6.1:2522587-2522606 MS.gene82917:intron 25.0%
!! TTTTTACGATTTGACGATTA+TGG + chr6.1:2526473-2526492 None:intergenic 25.0%
!!! ATCTATCTACTGTCTTTTTT+TGG + chr6.1:2524459-2524478 None:intergenic 25.0%
!!! ATTTTAGTTTGAGTTTCTAC+GGG + chr6.1:2527025-2527044 None:intergenic 25.0%
!!! CTTTTGGTTTTTATGAATGT+TGG - chr6.1:2522400-2522419 MS.gene82917:intron 25.0%
!!! GAATTTTTAGATTACCCTTT+TGG - chr6.1:2523439-2523458 MS.gene82917:CDS 25.0%
!!! TTGTTTTTCTTAATGCTTGT+TGG - chr6.1:2522954-2522973 MS.gene82917:intron 25.0%
AAACCTCATTGGGATAAATA+CGG - chr6.1:2525196-2525215 MS.gene82917:intron 30.0%
AACATCTGTGAATGGTAATA+AGG - chr6.1:2526263-2526282 MS.gene82917:intron 30.0%
AAGAAACTTACTTAACAGCA+AGG + chr6.1:2522336-2522355 None:intergenic 30.0%
AAGGTTACTAGACCTATATT+AGG - chr6.1:2525588-2525607 MS.gene82917:intron 30.0%
ACCAATTATCATGTTATCAG+GGG - chr6.1:2523690-2523709 MS.gene82917:intron 30.0%
ACTTTGTGCTTTCTTTAGTA+TGG - chr6.1:2524273-2524292 MS.gene82917:intron 30.0%
AGAAAGACGGTATTAATCTA+CGG + chr6.1:2525490-2525509 None:intergenic 30.0%
ATATTTCCTAACCATATTGG+TGG - chr6.1:2524823-2524842 MS.gene82917:intron 30.0%
ATTATCAATGACAATTCTCG+AGG + chr6.1:2522717-2522736 None:intergenic 30.0%
ATTCTTGACCAATGTAAAGT+TGG - chr6.1:2526312-2526331 MS.gene82917:intron 30.0%
ATTGATTATAGTTGCACGTT+TGG - chr6.1:2523016-2523035 MS.gene82917:intron 30.0%
CAAGCATTAAGAAAAACAAG+AGG + chr6.1:2522953-2522972 None:intergenic 30.0%
CAATACAATATCCACCAATA+TGG + chr6.1:2524837-2524856 None:intergenic 30.0%
CACATTAGAATTGATTATGG+AGG + chr6.1:2523226-2523245 None:intergenic 30.0%
CACCAATTATCATGTTATCA+GGG - chr6.1:2523689-2523708 MS.gene82917:intron 30.0%
CGATGTGTTAAGTTAGATAT+CGG - chr6.1:2524306-2524325 MS.gene82917:CDS 30.0%
GAATGTTGGTATTTGTGTTT+AGG - chr6.1:2522414-2522433 MS.gene82917:intron 30.0%
GACAACACATAATATATGCA+AGG - chr6.1:2524408-2524427 MS.gene82917:CDS 30.0%
GATTAAGTAGTTTATCCAGA+CGG + chr6.1:2525774-2525793 None:intergenic 30.0%
GCAAACTTGATTCCTAATAT+AGG + chr6.1:2525603-2525622 None:intergenic 30.0%
GCAACTATAATCAATTCTAG+AGG + chr6.1:2523011-2523030 None:intergenic 30.0%
TAACTAGCATCTCTATTAAC+AGG + chr6.1:2524621-2524640 None:intergenic 30.0%
TAACTATGGACATAAGCATT+TGG + chr6.1:2523999-2524018 None:intergenic 30.0%
TATGGTTAGGAAATATTACC+GGG + chr6.1:2524819-2524838 None:intergenic 30.0%
TCACCAATTATCATGTTATC+AGG - chr6.1:2523688-2523707 MS.gene82917:intron 30.0%
TGATGAAGATGAAGAGATTT+GGG + chr6.1:2522031-2522050 None:intergenic 30.0%
TTATGAGTAGAAATCGAACT+CGG + chr6.1:2524579-2524598 None:intergenic 30.0%
TTGATCAATTGGTGAAGTTT+GGG - chr6.1:2525565-2525584 MS.gene82917:intron 30.0%
TTGGTATTTGTGTTTAGGTA+GGG - chr6.1:2522419-2522438 MS.gene82917:intron 30.0%
TTGGTTATATAGACAACAGA+CGG + chr6.1:2523364-2523383 None:intergenic 30.0%
! ACAGAATCAAAGCATGTTTT+TGG + chr6.1:2522148-2522167 None:intergenic 30.0%
!! ATTGATTTTGGTATGTTTGG+AGG - chr6.1:2522669-2522688 MS.gene82917:intron 30.0%
!! GCTGTTTTCATAAGTTATCT+TGG - chr6.1:2525874-2525893 MS.gene82917:intron 30.0%
!! TTTCTCAAAATAGTGGACTT+CGG - chr6.1:2525066-2525085 MS.gene82917:intron 30.0%
!!! GTTTTTGGTATAGTGAGTTT+TGG + chr6.1:2522133-2522152 None:intergenic 30.0%
!!! TATCTACTGTCTTTTTTTGG+TGG + chr6.1:2524456-2524475 None:intergenic 30.0%
!!! TGTTTTAAAGCGCTCAAATT+GGG + chr6.1:2525398-2525417 None:intergenic 30.0%
AACAGTTTACAGTGTTCAAC+CGG + chr6.1:2524896-2524915 None:intergenic 35.0%
AACTGATTACTCCTGTTCAA+TGG - chr6.1:2524551-2524570 MS.gene82917:intron 35.0%
AATAGAAAATCCAACACCAG+AGG + chr6.1:2525246-2525265 None:intergenic 35.0%
AATTGAATGCCTCAATGTGT+TGG - chr6.1:2526777-2526796 MS.gene82917:CDS 35.0%
ACATAATATATGCAAGGTCC+GGG - chr6.1:2524414-2524433 MS.gene82917:CDS 35.0%
ACCCACATTCAAAAACCAAA+AGG + chr6.1:2523457-2523476 None:intergenic 35.0%
ACCCCTGATAACATGATAAT+TGG + chr6.1:2523694-2523713 None:intergenic 35.0%
AGAGATGCTAGTTATTTGCA+GGG - chr6.1:2524627-2524646 MS.gene82917:intron 35.0%
ATATGTGTTCAATTCAGCAG+TGG + chr6.1:2523564-2523583 None:intergenic 35.0%
CAATATCCACCAATATGGTT+AGG + chr6.1:2524832-2524851 None:intergenic 35.0%
CAATGGCATTGTTGATCAAT+TGG - chr6.1:2525554-2525573 MS.gene82917:intron 35.0%
CACATAATATATGCAAGGTC+CGG - chr6.1:2524413-2524432 MS.gene82917:CDS 35.0%
CAGTAGATAGATACACTTGT+TGG - chr6.1:2524467-2524486 MS.gene82917:intron 35.0%
CATCAGTCTGTATAACATCT+TGG + chr6.1:2525127-2525146 None:intergenic 35.0%
CCCACATTCAAAAACCAAAA+GGG + chr6.1:2523456-2523475 None:intergenic 35.0%
CCTTATCACCAACTTTACAT+TGG + chr6.1:2526323-2526342 None:intergenic 35.0%
GACATCATAACATCTGTGAA+TGG - chr6.1:2526255-2526274 MS.gene82917:intron 35.0%
GGGTGCTTCTTATTGAATAA+AGG - chr6.1:2523820-2523839 MS.gene82917:intron 35.0%
GTCTGTATAACATCTTGGAT+AGG + chr6.1:2525122-2525141 None:intergenic 35.0%
GTGATGAAGATGAAGAGATT+TGG + chr6.1:2522032-2522051 None:intergenic 35.0%
GTTGATCAATTGGTGAAGTT+TGG - chr6.1:2525564-2525583 MS.gene82917:intron 35.0%
GTTGGTATTTGTGTTTAGGT+AGG - chr6.1:2522418-2522437 MS.gene82917:intron 35.0%
TAGAGATGCTAGTTATTTGC+AGG - chr6.1:2524626-2524645 MS.gene82917:intron 35.0%
TGAAATTTCCATGGAAATCC+CGG - chr6.1:2524874-2524893 MS.gene82917:intron 35.0%
TGTCTCCTTAAAAACTGAAC+CGG + chr6.1:2525458-2525477 None:intergenic 35.0%
TGTTGATATTCAGGTGATTG+TGG - chr6.1:2527082-2527101 MS.gene82917:CDS 35.0%
TTGGGATACATCTACCTAAA+AGG + chr6.1:2522800-2522819 None:intergenic 35.0%
! CACTTGTTCAACTACCTTTT+AGG - chr6.1:2522783-2522802 MS.gene82917:CDS 35.0%
! GAATGTGGGTATTTCTGTTT+AGG - chr6.1:2523467-2523486 MS.gene82917:CDS 35.0%
! GACTCTTTTCTTAGGAATTG+TGG + chr6.1:2525026-2525045 None:intergenic 35.0%
! GTTTATCGCGTCTTCTTTTA+AGG - chr6.1:2526081-2526100 MS.gene82917:intron 35.0%
! TGGGTATTTCTGTTTAGGAA+GGG - chr6.1:2523472-2523491 MS.gene82917:CDS 35.0%
! TTGATTCTAACTTGCATGCT+TGG - chr6.1:2523295-2523314 MS.gene82917:intron 35.0%
!! ATAGTTCTGGAAACCTCATT+GGG - chr6.1:2525186-2525205 MS.gene82917:intron 35.0%
!! CCAATGTAAAGTTGGTGATA+AGG - chr6.1:2526320-2526339 MS.gene82917:intron 35.0%
!! CTTTTGTTGTAAATGCTCCT+AGG - chr6.1:2522236-2522255 MS.gene82917:intron 35.0%
!! GAGTTTTGTAATGACCCTTT+TGG - chr6.1:2522384-2522403 MS.gene82917:intron 35.0%
!! GTAAAGTTGGTGATAAGGTA+CGG - chr6.1:2526325-2526344 MS.gene82917:intron 35.0%
!! GTCAGAAAGTGTTTGCTATT+GGG - chr6.1:2524791-2524810 MS.gene82917:intron 35.0%
!! TTTAACTTTTTGGGCCTGTT+TGG + chr6.1:2526986-2527005 None:intergenic 35.0%
!!! ACCCTTTTGGTTTTTGAATG+TGG - chr6.1:2523452-2523471 MS.gene82917:CDS 35.0%
!!! CCCTTTTGGTTTTTGAATGT+GGG - chr6.1:2523453-2523472 MS.gene82917:CDS 35.0%
!!! CTGTTTTAAAGCGCTCAAAT+TGG + chr6.1:2525399-2525418 None:intergenic 35.0%
!!! GTTTTAAAAACTGAACCGGA+TGG - chr6.1:2525312-2525331 MS.gene82917:intron 35.0%
AAAACAGTTGAACCATGACC+TGG - chr6.1:2525412-2525431 MS.gene82917:CDS 40.0%
AAGATGAAGAGATTTGGGCT+TGG + chr6.1:2522026-2522045 None:intergenic 40.0%
AATTGCTCCACAGATTGATC+TGG + chr6.1:2525627-2525646 None:intergenic 40.0%
ACAAGTACTTAGGCTGCATT+TGG + chr6.1:2524050-2524069 None:intergenic 40.0%
ACAGTTTACAGTGTTCAACC+GGG + chr6.1:2524895-2524914 None:intergenic 40.0%
ACCTACGATGCAAAAGTTGT+TGG - chr6.1:2524670-2524689 MS.gene82917:intron 40.0%
ACGAATTTGATTGATGGAGC+TGG - chr6.1:2526162-2526181 MS.gene82917:intron 40.0%
ACTGATGCAGCAATTAATCC+TGG - chr6.1:2525140-2525159 MS.gene82917:intron 40.0%
ACTTCGGCGAGAAATTAGTT+CGG - chr6.1:2525082-2525101 MS.gene82917:intron 40.0%
AGATCAATCTGTGGAGCAAT+TGG - chr6.1:2525626-2525645 MS.gene82917:intron 40.0%
AGGGTGACGAATTTGATTGA+TGG - chr6.1:2526156-2526175 MS.gene82917:intron 40.0%
ATGTCATGTCCAACACATTG+AGG + chr6.1:2526789-2526808 None:intergenic 40.0%
ATGTGTGTATGTGTTTAGGC+AGG - chr6.1:2523587-2523606 MS.gene82917:intron 40.0%
CACTTACTTCACAGCAATGT+TGG + chr6.1:2523383-2523402 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+GGG - chr6.1:2524415-2524434 MS.gene82917:CDS 40.0%
GAATGTGGAAATGAGTGAAG+AGG + chr6.1:2521966-2521985 None:intergenic 40.0%
GATCAATCTGTGGAGCAATT+GGG - chr6.1:2525627-2525646 MS.gene82917:intron 40.0%
GCAATTAATCCTGGTAACAG+CGG - chr6.1:2525149-2525168 MS.gene82917:intron 40.0%
GGAAGAGTTGAAGAAGAATG+TGG + chr6.1:2521981-2522000 None:intergenic 40.0%
GTTACTACAACTCTGCTTTC+AGG + chr6.1:2526656-2526675 None:intergenic 40.0%
GTTTACTTTGGATGTGTTGG+AGG - chr6.1:2523614-2523633 MS.gene82917:intron 40.0%
TAAGCTCAGTCAATCCAAAC+AGG - chr6.1:2526969-2526988 MS.gene82917:CDS 40.0%
TAGCCGTATTTATCCCAATG+AGG + chr6.1:2525202-2525221 None:intergenic 40.0%
TCAACAAAGCGTGATTCCTA+TGG - chr6.1:2526216-2526235 MS.gene82917:intron 40.0%
TCAATTGGTGAAGTTTGGGA+AGG - chr6.1:2525569-2525588 MS.gene82917:intron 40.0%
TGAAGAGGAAGAAGAAGCTA+TGG + chr6.1:2521951-2521970 None:intergenic 40.0%
TGAGGTTTCCAGAACTATCT+AGG + chr6.1:2525184-2525203 None:intergenic 40.0%
TGCGTTTACTTTGGATGTGT+TGG - chr6.1:2523611-2523630 MS.gene82917:intron 40.0%
TGGAGGTTCTCGATTAGAAT+TGG - chr6.1:2522686-2522705 MS.gene82917:intron 40.0%
TTGTTGGCACTTGGTTTAGT+TGG - chr6.1:2524483-2524502 MS.gene82917:intron 40.0%
TTTCCAGAACTATCTAGGAG+TGG + chr6.1:2525179-2525198 None:intergenic 40.0%
! ACCAACAACTTTTGCATCGT+AGG + chr6.1:2524674-2524693 None:intergenic 40.0%
! CTGGCTAAATAGTGAGTTGA+AGG - chr6.1:2523103-2523122 MS.gene82917:intron 40.0%
! GTGGGTATTTCTGTTTAGGA+AGG - chr6.1:2523471-2523490 MS.gene82917:CDS 40.0%
! TAGATACACTTGTTGGCACT+TGG - chr6.1:2524474-2524493 MS.gene82917:intron 40.0%
!! GATAGTTCTGGAAACCTCAT+TGG - chr6.1:2525185-2525204 MS.gene82917:intron 40.0%
!! GGTCAGAAAGTGTTTGCTAT+TGG - chr6.1:2524790-2524809 MS.gene82917:intron 40.0%
!!! AGTGGTGGTTTTGATGATGA+AGG + chr6.1:2522103-2522122 None:intergenic 40.0%
!!! AGTTTTGGAAGTGAAAGTGG+TGG + chr6.1:2522118-2522137 None:intergenic 40.0%
!!! CTACTGTCTTTTTTTGGTGG+TGG + chr6.1:2524453-2524472 None:intergenic 40.0%
!!! CTTTTGCATCGTAGGTTGAT+TGG + chr6.1:2524666-2524685 None:intergenic 40.0%
!!! GTGAGTTTTGGAAGTGAAAG+TGG + chr6.1:2522121-2522140 None:intergenic 40.0%
!!! GTGGTGGTTTTGATGATGAA+GGG + chr6.1:2522102-2522121 None:intergenic 40.0%
!!! TGGTGGTTTTGATGATGAAG+GGG + chr6.1:2522101-2522120 None:intergenic 40.0%
!!! TGTTGGTTTTGACCAAGACA+AGG - chr6.1:2524687-2524706 MS.gene82917:intron 40.0%
AAACTTACTGCTTTCCCAGC+TGG + chr6.1:2525693-2525712 None:intergenic 45.0%
AACCAGCACTGTCTACAGTA+TGG - chr6.1:2525354-2525373 MS.gene82917:intron 45.0%
AACCATACTGTAGACAGTGC+TGG + chr6.1:2525359-2525378 None:intergenic 45.0%
ACGGCTATATACTCTCCATC+TGG - chr6.1:2525215-2525234 MS.gene82917:intron 45.0%
ACTAAGTAGGGTCGACTACT+TGG + chr6.1:2522559-2522578 None:intergenic 45.0%
ATCTGGGTCAGGTTTCGTTT+GGG - chr6.1:2523647-2523666 MS.gene82917:intron 45.0%
ATTAATCCTGGTAACAGCGG+AGG - chr6.1:2525152-2525171 MS.gene82917:intron 45.0%
CACTTGGTTTAGTTGGCACT+TGG - chr6.1:2524490-2524509 MS.gene82917:intron 45.0%
CGCTTACAACTGGAGTTATC+AGG - chr6.1:2524960-2524979 MS.gene82917:intron 45.0%
CTAGATCACACGCTTACAAC+TGG - chr6.1:2524950-2524969 MS.gene82917:intron 45.0%
GAAATTAGTTCGGCTGCAAC+TGG - chr6.1:2525092-2525111 MS.gene82917:intron 45.0%
GGGTGAGAAAGTAAGTGAGT+TGG + chr6.1:2522058-2522077 None:intergenic 45.0%
GTTCGACTGATTGTACCATC+CGG + chr6.1:2525330-2525349 None:intergenic 45.0%
GTTTGCTCCAGATCAATCTG+TGG - chr6.1:2525617-2525636 MS.gene82917:intron 45.0%
TAGGCAGGATGCGTTTACTT+TGG - chr6.1:2523602-2523621 MS.gene82917:intron 45.0%
TTAATCCTGGTAACAGCGGA+GGG - chr6.1:2525153-2525172 MS.gene82917:intron 45.0%
TTGCACGTTTGGTCTGTGAT+TGG - chr6.1:2523027-2523046 MS.gene82917:intron 45.0%
! AGTAAGTGGAGTGCTTGTCT+TGG - chr6.1:2525650-2525669 MS.gene82917:intron 45.0%
! ATTGGCCTGAGCTTGTCTTT+AGG + chr6.1:2524739-2524758 None:intergenic 45.0%
! GGTTTCGTTTGGGATAAGGA+TGG - chr6.1:2523657-2523676 MS.gene82917:intron 45.0%
! GTCAGGTTTCGTTTGGGATA+AGG - chr6.1:2523653-2523672 MS.gene82917:intron 45.0%
! GTCGTCCGGTTCAGTTTTTA+AGG - chr6.1:2525450-2525469 MS.gene82917:CDS 45.0%
! TGACGGGGATCTTTTCTTTG+TGG + chr6.1:2527124-2527143 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr6.1:2524386-2524405 MS.gene82917:CDS 45.0%
!! AGTGTTTGCTATTGGGAACC+CGG - chr6.1:2524798-2524817 MS.gene82917:intron 45.0%
!! TCATGTTATCAGGGGTGCTT+CGG - chr6.1:2523698-2523717 MS.gene82917:intron 45.0%
!!! GGTGGTTTTGATGATGAAGG+GGG + chr6.1:2522100-2522119 None:intergenic 45.0%
!!! GTGGTTTTGATGATGAAGGG+GGG + chr6.1:2522099-2522118 None:intergenic 45.0%
!!! TGTCTTTTTTTGGTGGTGGC+CGG + chr6.1:2524449-2524468 None:intergenic 45.0%
!!! AATAAAAAATAATTCAATTT+TGG - chr6.1:2522872-2522891 MS.gene82917:CDS 5.0%
!!! TATTAATTTGAATATAAATA+TGG - chr6.1:2526396-2526415 MS.gene82917:intron 5.0%
AAGCTCAGGCCAATACCTGT+TGG - chr6.1:2524745-2524764 MS.gene82917:intron 50.0%
AAGTCAGCAGAGACACCAAC+AGG + chr6.1:2524763-2524782 None:intergenic 50.0%
ACAGTTGAACCATGACCTGG+TGG - chr6.1:2525415-2525434 MS.gene82917:CDS 50.0%
GATCTGGGTCAGGTTTCGTT+TGG - chr6.1:2523646-2523665 MS.gene82917:intron 50.0%
GATGTGTTGGAGGTTCCTCA+GGG - chr6.1:2523624-2523643 MS.gene82917:intron 50.0%
GATTGAAGAGCGAGGGAATG+AGG + chr6.1:2522002-2522021 None:intergenic 50.0%
GCACAGCAACATCCTTGTCT+TGG + chr6.1:2524702-2524721 None:intergenic 50.0%
GCAGAGACACCAACAGGTAT+TGG + chr6.1:2524757-2524776 None:intergenic 50.0%
GTGGAGCAATTGGGAGTAAG+TGG - chr6.1:2525636-2525655 MS.gene82917:intron 50.0%
GTGTTCAACCGGGATTTCCA+TGG + chr6.1:2524885-2524904 None:intergenic 50.0%
TCATCAGACTGCAGCTTCCT+AGG + chr6.1:2522256-2522275 None:intergenic 50.0%
! GCTTGGTGATTGAAGAGCGA+GGG + chr6.1:2522009-2522028 None:intergenic 50.0%
! TTATAGAGTTAGGCGCCGTC+TGG - chr6.1:2525756-2525775 MS.gene82917:intron 50.0%
! TTGGTGATAAGGTACGGTGC+TGG - chr6.1:2526331-2526350 MS.gene82917:intron 50.0%
!! GTCTCTGCTGACTTGCTTGT+TGG - chr6.1:2524769-2524788 MS.gene82917:intron 50.0%
!! GTGATTGTGGAAGTGTTGCG+AGG - chr6.1:2527095-2527114 MS.gene82917:CDS 50.0%
!! TCAGAGCTCACAGTATCGAC+AGG + chr6.1:2525269-2525288 None:intergenic 50.0%
!! TTGATGATGAAGGGGGGTGT+AGG + chr6.1:2522093-2522112 None:intergenic 50.0%
!!! GTCTTTTTTTGGTGGTGGCC+GGG + chr6.1:2524448-2524467 None:intergenic 50.0%
!!! TCTTTTTTTGGTGGTGGCCG+GGG + chr6.1:2524447-2524466 None:intergenic 50.0%
AAACCTGACCCAGATCCCTG+AGG + chr6.1:2523642-2523661 None:intergenic 55.0%
ACACCAGAGGATGCACCAGA+TGG + chr6.1:2525233-2525252 None:intergenic 55.0%
ACGCGCCTAAAGACAAGCTC+AGG - chr6.1:2524731-2524750 MS.gene82917:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr6.1:2524384-2524403 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr6.1:2524381-2524400 MS.gene82917:CDS 55.0%
GGATGTGTTGGAGGTTCCTC+AGG - chr6.1:2523623-2523642 MS.gene82917:intron 55.0%
GGGCCACTCCTAGATAGTTC+TGG - chr6.1:2525173-2525192 MS.gene82917:intron 55.0%
GGGTGTAGGAGGAAAAGGGT+GGG + chr6.1:2522079-2522098 None:intergenic 55.0%
GGTGTAGGAGGAAAAGGGTG+GGG + chr6.1:2522078-2522097 None:intergenic 55.0%
TCTCCATCTGGTGCATCCTC+TGG - chr6.1:2525227-2525246 MS.gene82917:intron 55.0%
TCTGGTGCATCCTCTGGTGT+TGG - chr6.1:2525233-2525252 MS.gene82917:intron 55.0%
TGGAGGTTCCTCAGGGATCT+GGG - chr6.1:2523631-2523650 MS.gene82917:intron 55.0%
TTGGAGGTTCCTCAGGGATC+TGG - chr6.1:2523630-2523649 MS.gene82917:intron 55.0%
! AAGGGGGGTGTAGGAGGAAA+AGG + chr6.1:2522084-2522103 None:intergenic 55.0%
! AGGGGGGTGTAGGAGGAAAA+GGG + chr6.1:2522083-2522102 None:intergenic 55.0%
! ATGATGAAGGGGGGTGTAGG+AGG + chr6.1:2522090-2522109 None:intergenic 55.0%
!! CGAACTCGGTGCCATTGAAC+AGG + chr6.1:2524565-2524584 None:intergenic 55.0%
!! GCTTCGGATCTCAGGTTGGT+AGG - chr6.1:2523714-2523733 MS.gene82917:intron 55.0%
!! GGCTTGGTGATTGAAGAGCG+AGG + chr6.1:2522010-2522029 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+CGG - chr6.1:2524427-2524446 MS.gene82917:CDS 60.0%
CCAGCAAGACCACCAGGTCA+TGG + chr6.1:2525427-2525446 None:intergenic 60.0%
GACGAACCAGCAAGACCACC+AGG + chr6.1:2525433-2525452 None:intergenic 60.0%
GGGGTGTAGGAGGAAAAGGG+TGG + chr6.1:2522080-2522099 None:intergenic 60.0%
GGGTGCTTCGGATCTCAGGT+TGG - chr6.1:2523710-2523729 MS.gene82917:intron 60.0%
GTCTTGGATGCTCCTGCCAC+TGG - chr6.1:2525666-2525685 MS.gene82917:intron 60.0%
GTTCCTCAGGGATCTGGGTC+AGG - chr6.1:2523636-2523655 MS.gene82917:intron 60.0%
TGCTTTCCCAGCTGGACCAG+TGG + chr6.1:2525685-2525704 None:intergenic 60.0%
! CCATGACCTGGTGGTCTTGC+TGG - chr6.1:2525424-2525443 MS.gene82917:CDS 60.0%
! CCTTCGGCTCGAGAATGACG+GGG + chr6.1:2527139-2527158 None:intergenic 60.0%
! GCCTTCGGCTCGAGAATGAC+GGG + chr6.1:2527140-2527159 None:intergenic 60.0%
! GGCCTTCGGCTCGAGAATGA+CGG + chr6.1:2527141-2527160 None:intergenic 60.0%
!! GGTCTTGCTGGTTCGTCGTC+CGG - chr6.1:2525436-2525455 MS.gene82917:CDS 60.0%
!! TCAGGGGTGCTTCGGATCTC+AGG - chr6.1:2523706-2523725 MS.gene82917:intron 60.0%
AGTGGCCCTCCGCTGTTACC+AGG + chr6.1:2525161-2525180 None:intergenic 65.0%
CCCCGTCATTCTCGAGCCGA+AGG - chr6.1:2527136-2527155 MS.gene82917:CDS 65.0%
CTCCTGCCACTGGTCCAGCT+GGG - chr6.1:2525676-2525695 MS.gene82917:intron 65.0%
TTCCCAGCTGGACCAGTGGC+AGG + chr6.1:2525681-2525700 None:intergenic 65.0%
GCTCCTGCCACTGGTCCAGC+TGG - chr6.1:2525675-2525694 MS.gene82917:intron 70.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr6.1:2524435-2524454 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 2521944 2527172 2521944 ID=MS.gene82917
chr6.1 mRNA 2521944 2527172 2521944 ID=MS.gene82917.t1;Parent=MS.gene82917
chr6.1 exon 2526772 2527172 2526772 ID=MS.gene82917.t1.exon1;Parent=MS.gene82917.t1
chr6.1 CDS 2526772 2527172 2526772 ID=cds.MS.gene82917.t1;Parent=MS.gene82917.t1
chr6.1 exon 2525389 2525511 2525389 ID=MS.gene82917.t1.exon2;Parent=MS.gene82917.t1
chr6.1 CDS 2525389 2525511 2525389 ID=cds.MS.gene82917.t1;Parent=MS.gene82917.t1
chr6.1 exon 2524297 2524468 2524297 ID=MS.gene82917.t1.exon3;Parent=MS.gene82917.t1
chr6.1 CDS 2524297 2524468 2524297 ID=cds.MS.gene82917.t1;Parent=MS.gene82917.t1
chr6.1 exon 2524135 2524172 2524135 ID=MS.gene82917.t1.exon4;Parent=MS.gene82917.t1
chr6.1 CDS 2524135 2524172 2524135 ID=cds.MS.gene82917.t1;Parent=MS.gene82917.t1
chr6.1 exon 2523839 2524037 2523839 ID=MS.gene82917.t1.exon5;Parent=MS.gene82917.t1
chr6.1 CDS 2523839 2524037 2523839 ID=cds.MS.gene82917.t1;Parent=MS.gene82917.t1
chr6.1 exon 2523412 2523564 2523412 ID=MS.gene82917.t1.exon6;Parent=MS.gene82917.t1
chr6.1 CDS 2523412 2523564 2523412 ID=cds.MS.gene82917.t1;Parent=MS.gene82917.t1
chr6.1 exon 2522775 2522909 2522775 ID=MS.gene82917.t1.exon7;Parent=MS.gene82917.t1
chr6.1 CDS 2522775 2522909 2522775 ID=cds.MS.gene82917.t1;Parent=MS.gene82917.t1
chr6.1 exon 2521944 2522021 2521944 ID=MS.gene82917.t1.exon8;Parent=MS.gene82917.t1
chr6.1 CDS 2521944 2522021 2521944 ID=cds.MS.gene82917.t1;Parent=MS.gene82917.t1
Gene Sequence

>MS.gene82917

ATGGCCATAGCTTCTTCTTCCTCTTCACTCATTTCCACATTCTTCTTCAACTCTTCCTCATTCCCTCGCTCTTCAATCACCAAGCCCAAATCTCTTCATCTTCATCACACACCAACTCACTTACTTTCTCACCCCACCCTTTTCCTCCTACACCCCCCTTCATCATCAAAACCACCACTTTCACTTCCAAAACTCACTATACCAAAAACATGCTTTGATTCTGTACTCATTCTATGTACTTCACTTGCACTATCTTTGACTCTCTTCATTTCAAATGTTGATTCAGCTTCTGCTTTTGTTGTAAATGCTCCTAGGAAGCTGCAGTCTGATGAACTTGCTACTGTTCGTTTGTTTCAAGAGAATACTCCTTCTGTTGTTTATATAACTAACCTTGCTGTTAAGTAAGTTTCTTTTTTGTTTCTTTTGATGAATTAAAGATTGAGTTTTGTAATGACCCTTTTGGTTTTTATGAATGTTGGTATTTGTGTTTAGGTAGGGTTAGAAAAAAATATTGAATTTTGTGATGACCCTTTTGTAACTATTAAGAAAGATTTAGATTAATGATTTGGACTGAAATATAGTTTATGACAGTACATTACGTCGTAATTTGATCCAAGTAGTCGACCCTACTTAGTGAGATAAATTTGATTGTTGTTGTATGTTTGGTTCCAAAATTGATTTAGTAAAATTGATTCTAGGTTGCATCGTGATGATGAAGATTTAAAATTGATTTTGGTATGTTTGGAGGTTCTCGATTAGAATTGGTTTTGCCTCGAGAATTGTCATTGATAATACTTGAAGATAGAATTTGTAGCTCTCGCTTTAAAACTTGATTTTTACACTTGTTCAACTACCTTTTAGGTAGATGTATCCCAAAGTAAATCATTTTACCTTAATCTTACTTTTACTAAAATCAATTTTTGTTTATAATAAAAAATAATTCAATTTTGGTTATGACCTTGATTTTTCTTCTTTTGATGAAAAAAAGATTGAATTTTTAGATGACCCTCTTGTTTTTCTTAATGCTTGTTGGTTCCAAAATTGATTTAGTACAATTGATTTTGCCTCTAGAATTGATTATAGTTGCACGTTTGGTCTGTGATTGGTTGTGCAGTGACAAAAATTGATTTTTTAGTGAATTGATTTTGTAACATTTATTCTGGCTAAATAGTGAGTTGAAGGTAAAGTGATTTATGTTAGGATAGATTCTTCTAAATGTGAGTTAAAAAATAAACGATTTACTTTGGGAACAACTAAATATGTAAAAATTAATTCTACACCTCCATAATCAATTCTAATGTGTTTAGTTCCAAATTTGATTTTTGACATGTTTGTATCTTTTCGAGTAGAATTGATTCTAACTTGCATGCTTGGATTCTTGAGAATTAAAATTGATTTTGTTATGTTTGGAAGTTCTCCGTCTGTTGTCTATATAACCAACATTGCTGTGAAGTAAGTGTTTTTTTCGTCTTCTTCTTTCGATGAAATAAAGATCGAATTTTTAGATTACCCTTTTGGTTTTTGAATGTGGGTATTTCTGTTTAGGAAGGGTTTGATTCTTTTGATCGAAAAAGGTTGAATTTTCAGCCTGAATCAATTTATTCAAAATCAAAATTTCCACTGCTGAATTGAACACATATTTAATGTGTGTATGTGTTTAGGCAGGATGCGTTTACTTTGGATGTGTTGGAGGTTCCTCAGGGATCTGGGTCAGGTTTCGTTTGGGATAAGGATGGTCATATAGTCACCAATTATCATGTTATCAGGGGTGCTTCGGATCTCAGGTTGGTAGGTTTTTGCTTCTTTTGATTGATTTCTCAAACTTAAATTTGTATGTATCTGGGTAAACAACTTAATTAATCAAACAACTTATCAGGGGTGCTTCTTATTGAATAAAGGCATGTTTGGTTAAACAACGTAATTGAACACCTATAGCATAAGTTTTTATCATTCAAGTGTTTGGTTAAACTATTTTTATAAGCTATTATGGGGAGCTTATCATAATTTGTTGAAAACAATGCAAGATGTCATTAATTGTTTCGATAAGCTCATCCAAATGCTTATGTCCATAGTTAAGTTCAAATAAGTCGTTCATAAGTTAATCCAAATGCAGCCTAAGTACTTGTAAGTTATAATTTGTTGTATACTTAATCAAAGGCTGCTCTTAAATGTTAAACTTAAAATCAAGAAATTGGATATTTTATTGGAGAGTGCACCATTTAATTTAATGCACTGATATATTAAATATGACACTTTCAAATAAACATTTATTTTTATTCCTTAATCTATAATATTGCCTAAAACAAAAAGAAGATGATAATGGTTTGTTACTTTGTGCTTTCTTTAGTATGGTATGACTTTGCGATGTGTTAAGTTAGATATCGGATTCATTTAATTGAACTCACTGAGCATCATTTTAGACAGTAGATAGATACGTCCTCGTGAGCTTAGCTCAGTTGGTATGGACAACACATAATATATGCAAGGTCCGGGGTTCAAACCCCGGCCACCACCAAAAAAAGACAGTAGATAGATACACTTGTTGGCACTTGGTTTAGTTGGCACTTGGTTTAGCTTAAAGTGCGTGTCTGTGTGCGTTTGTGTGTGAACTGATTACTCCTGTTCAATGGCACCGAGTTCGATTTCTACTCATAAGATAAGAAAAAACAGTACTCCTGTTAATAGAGATGCTAGTTATTTGCAGGGTCACTCTTGCTGACCAATCAACCTACGATGCAAAAGTTGTTGGTTTTGACCAAGACAAGGATGTTGCTGTGCTGCGTGTTGACGCGCCTAAAGACAAGCTCAGGCCAATACCTGTTGGTGTCTCTGCTGACTTGCTTGTTGGTCAGAAAGTGTTTGCTATTGGGAACCCGGTAATATTTCCTAACCATATTGGTGGATATTGTATTGTAAATGTGTATTCTCTATGAAATTTCCATGGAAATCCCGGTTGAACACTGTAAACTGTTTTCATAAGCTATTATTTGATTTTTGCAGTTTGGACTAGATCACACGCTTACAACTGGAGTTATCAGGTATGAAAACTGTAAACTGAATATTTTAATGCAAATTTTTTCCACAATTCCTAAGAAAAGAGTCAAATTTTTTACTAATACATGTTTCTCAAAATAGTGGACTTCGGCGAGAAATTAGTTCGGCTGCAACTGGTCGTCCTATCCAAGATGTTATACAGACTGATGCAGCAATTAATCCTGGTAACAGCGGAGGGCCACTCCTAGATAGTTCTGGAAACCTCATTGGGATAAATACGGCTATATACTCTCCATCTGGTGCATCCTCTGGTGTTGGATTTTCTATTCCTGTCGATACTGTGAGCTCTGACACTTTCCTCTCTTTATACAAATGTTTTAAAAACTGAACCGGATGGTACAATCAGTCGAACTGCGAACCAGCACTGTCTACAGTATGGTTATTTGAGCAGTTTCATCCCAATTTGAGCGCTTTAAAACAGTTGAACCATGACCTGGTGGTCTTGCTGGTTCGTCGTCCGGTTCAGTTTTTAAGGAGACAACTTACTCTCCGTAGATTAATACCGTCTTTCTTTATTCTCTTGAATAGTTTATTTTATTATTTTATATATTTAGGTCAATGGCATTGTTGATCAATTGGTGAAGTTTGGGAAGGTTACTAGACCTATATTAGGAATCAAGTTTGCTCCAGATCAATCTGTGGAGCAATTGGGAGTAAGTGGAGTGCTTGTCTTGGATGCTCCTGCCACTGGTCCAGCTGGGAAAGCAGTAAGTTTGTTATTTATCTATTTATTTATTTTAAAATGAAGAAATTTATTCTTATAGAGTTAGGCGCCGTCTGGATAAACTACTTAATCAAGCACTATTCATATACGTGCTTGTGTGCACGCTATTTCTATGTCAAAAGATAAATTAAAGTCAAACCATTTTGATATAAGCTGTTTTCATAAGTTATCTTGGAAAACTTATGAAAATAAGTTTAAAACAATTTATAGACATTCATGCTTTCTCAAACAATCTCACAAGTAAATTCAAACAAAGCTTTAATTCAAATGCAACAAATAGTTGCATATATTTCACATCAATGCCCAAAAAGTCTCTTTACTTTGATAAAAAACACTTGACTCATTCTTATATAAGCTAAGTTTATCGCGTCTTCTTTTAAGGAGTTTATGTTTTGAAACACTTCAGCTTGATTTGTTTGATTACAAATTTTTCAAGGGTGACGAATTTGATTGATGGAGCTGGTTAAATTTCTATTATGTTGTAGGGCTTACAATCAACAAAGCGTGATTCCTATGGTAGACTCATTTTAGGTGACATCATAACATCTGTGAATGGTAATAAGGTTTCTAATGGAAGTGATTTGTACAGAATTCTTGACCAATGTAAAGTTGGTGATAAGGTACGGTGCTGGTTCATTTACTTTAATGCTTGTGTATGTCTGCACTATATCTTTTATTAATTTGAATATAAATATGGATTTAATTCATTACATTGTTAGTGTCAAGATAATTTTACATTGTTAATCAACCATAATCGTCAAATCGTAAAAAATGTTCGATTTTAATCACAACTACTTCTAAACTCACATATTGTTGATTGTGAAATGTTGACAATGTAAAACTATTTGCACTTATAATGTATCAAAATTAAAATCTAAAAATGAATGTGCAACTTTTCCATTTTTATGATTTTTGTTATATCTCGGGACTTCCTGAAAGCAGAGTTGTAGTAACATGTTCAAATTTTGTTGATTTGCATGTTTTATGCATAAAGTTGACATGTTGCATGCAAATTGTTCAAGAATTCTTTTTGCATTTAGTTGATTCTAATGCTCAATTGAATGCCTCAATGTGTTGGACATGACATTCAAAACATTAAATAAAGTTCAACGGTTTACAAATAAGCTATAAGCAATTTTCATAAGTTATCATGGAGAGCTTATGAAAATAAGATGAAAATATGTATGGAGACGTCGTAAGTTATTTTCACAAGCTCTTCAAACTCGCTCATGTGCTTTGTCAATAGATAAGCTCAGTCAATCCAAACAGGCCCAAAAAGTTAAAGAAAATAGAAAACAAGCCCGTAGAAACTCAAACTAAAATTCAAGCTCATTTGTTAACCTAGTTTCATAATTGGTTATGTTGATATTCAGGTGATTGTGGAAGTGTTGCGAGGCGACCACAAAGAAAAGATCCCCGTCATTCTCGAGCCGAAGGCCGACGAAACATGA

Protein sequence

>MS.gene82917.t1

MAIASSSSSLISTFFFNSSSFPRSSITKPKSLHLHHTPTHLLSHPTLFLLHPPSSSKPPLSLPKLTIPKTCFDSVLILCTSLALSLTLFISNVDSASAFVVNAPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSGSGFVWDKDGHIVTNYHVIRGASDLRVTLADQSTYDAKVVGFDQDKDVAVLRVDAPKDKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPATGPAGKAGLQSTKRDSYGRLILGDIITSVNGNKVSNGSDLYRILDQCKVGDKVIVEVLRGDHKEKIPVILEPKADET