AlfalfaGEDB | MS.gene28345

M. sativa cultivar XinJiangDaYe / MS.gene28345

KEGG: -
GO: -
PFAM: PF05419.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28345.t1	XP_013456290.1	98.1	264	5	0	1	264	1	264	6.70E-125	456.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28345.t1	Q9LX31	59.3	189	70	2	79	264	81	265	7.9e-58	225.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28345.t1	A0A072ULR7	98.1	264	5	0	1	264	1	264	4.8e-125	456.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene28345	0.820853	5.51E-53	-1.69E-46
MS.gene049171	MS.gene28345	0.905482	4.10E-80	-1.69E-46
MS.gene049173	MS.gene28345	0.873181	1.79E-67	-1.69E-46
MS.gene049217	MS.gene28345	0.912846	1.22E-83	-1.69E-46
MS.gene049222	MS.gene28345	0.916126	2.59E-85	-1.69E-46
MS.gene049232	MS.gene28345	0.88754	1.30E-72	-1.69E-46
MS.gene049285	MS.gene28345	0.943195	1.86E-102	-1.69E-46
MS.gene049313	MS.gene28345	-0.803412	3.53E-49	-1.69E-46
MS.gene049320	MS.gene28345	0.951043	4.68E-109	-1.69E-46
MS.gene04939	MS.gene28345	0.818437	1.96E-52	-1.69E-46

Showing 1 to 10 of 259 entries

Previous1 2 3 4 5…26Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28345.t1	MTR_4g067150	98.106	264	5	0	1	264	1	264	0.0	530

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28345.t1	AT3G59400	60.847	189	67	3	79	264	81	265	1.23e-75	231

Showing 1 to 1 of 1 entries

Previous1Next

Find 65 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTCATCAAAACCAT+TGG	0.496783	4.2:+38670095	MS.gene28345:CDS
AAACAATTGACCAGCTGTGG+AGG	0.563830	4.2:+38669746	MS.gene28345:CDS
AAATGGAGCAATATAACTAC+AGG	0.552072	4.2:+38669884	MS.gene28345:CDS
AACAATTGACCAGCTGTGGA+GGG	0.613807	4.2:+38669747	MS.gene28345:CDS
AAGACGTCTTGTCTCTTCAT+CGG	0.512265	4.2:-38669638	None:intergenic
AAGGAAATGGAGCACTCAAA+GGG	0.561615	4.2:+38670070	MS.gene28345:CDS
ACCAACCTTGATGAAGAACT+TGG	0.545583	4.2:-38669839	None:intergenic
ACCAAGTTCTTCATCAAGGT+TGG	0.494609	4.2:+38669838	MS.gene28345:CDS
AGAAAATGTGATAGAGGAGT+TGG	0.385483	4.2:-38669518	None:intergenic
AGAGGTTGATGATGGCGTGG+AGG	0.664388	4.2:-38669557	None:intergenic

Showing 1 to 10 of 65 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGAGCAATATAACTAC+AGG	+	chr4.2:38669884-38669903	MS.gene28345:CDS	30.0%
TTGAATTGAGTGAAGAGAAT+TGG	-	chr4.2:38669368-38669387	None:intergenic	30.0%
AGAAAATGTGATAGAGGAGT+TGG	-	chr4.2:38669521-38669540	None:intergenic	35.0%
GACCATAGTGACAACAAATT+TGG	+	chr4.2:38669769-38669788	MS.gene28345:CDS	35.0%
GACGAAGTTGAAGTTTCATT+TGG	+	chr4.2:38670039-38670058	MS.gene28345:CDS	35.0%
GGAGATAGAAAATGTGATAG+AGG	-	chr4.2:38669527-38669546	None:intergenic	35.0%
AAGACGTCTTGTCTCTTCAT+CGG	-	chr4.2:38669641-38669660	None:intergenic	40.0%
ACCAACCTTGATGAAGAACT+TGG	-	chr4.2:38669842-38669861	None:intergenic	40.0%
ACCAAGTTCTTCATCAAGGT+TGG	+	chr4.2:38669838-38669857	MS.gene28345:CDS	40.0%
ATGAAACTTCAACTTCGTCC+TGG	-	chr4.2:38670038-38670057	None:intergenic	40.0%

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	38669358	38670152	38669358	ID=MS.gene28345
chr4.2	mRNA	38669358	38670152	38669358	ID=MS.gene28345.t1;Parent=MS.gene28345
chr4.2	exon	38669358	38670152	38669358	ID=MS.gene28345.t1.exon1;Parent=MS.gene28345.t1
chr4.2	CDS	38669358	38670152	38669358	ID=cds.MS.gene28345.t1;Parent=MS.gene28345.t1

Gene Sequence

>MS.gene28345

ATGGCAACCAATTCTCTTCACTCAATTCAACATCATTCTCTCAGCAAACGCCACTACTACCCTTCTGAAACTGCTCCTCCATCCACACTTTCATCCTCACTTTTCCTCAAACCAACCACCATCAACCCCACCAACATAACCCTCTCTCACTCTTCCTCTTCCAACTCCTCTATCACATTTTCTATCTCCCAAACAACATCCTCCACGCCATCATCAACCTCTCAAACCAGCTCCTTTGAACTCCTCCAGCAGCATCTCTCAGCCAAAAACTTCCGAGAAGCCGATGAAGAGACAAGACGTCTTCTCATCGTCCTAGCAGGCGAAGCAGCTCAGAAGCGTGGCTATGTTTTCTTCTCAGAGGTTCAGTTCATCTCAGAAGCAGACCTCAAAACAATTGACCAGCTGTGGAGGGACCATAGTGACAACAAATTTGGATACAGTGTCCAAAAGAAATTATTTAATAAGGCTAAAAAAGACTTCACCAAGTTCTTCATCAAGGTTGGTTGGATGAAGAAGCTTGACACTGAAATGGAGCAATATAACTACAGGTCTTTTCCTACGGAGTTTATATGGGAGCTCAATGATGACACTCCAGAGGGTCATTTACCTCTGACAAATGCACTCAGAGGAACACAGTTGCTAAGTTATATTTTTAACCATCCAGCTTTTGATGCAGTCCAGGACGAAGTTGAAGTTTCATTTGGTAACACTGAAGGAAATGGAGCACTCAAAGGGTTAAAAGATTCATCAAAACCATTGGCTACCAAGATCTTCAAAACAGACTATAGTTTCTGA

Protein sequence

>MS.gene28345.t1

MATNSLHSIQHHSLSKRHYYPSETAPPSTLSSSLFLKPTTINPTNITLSHSSSSNSSITFSISQTTSSTPSSTSQTSSFELLQQHLSAKNFREADEETRRLLIVLAGEAAQKRGYVFFSEVQFISEADLKTIDQLWRDHSDNKFGYSVQKKLFNKAKKDFTKFFIKVGWMKKLDTEMEQYNYRSFPTEFIWELNDDTPEGHLPLTNALRGTQLLSYIFNHPAFDAVQDEVEVSFGNTEGNGALKGLKDSSKPLATKIFKTDYSF