AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73910.t1 MTR_7g114490 95.149 268 13 0 1 268 166 433 0.0 541
MS.gene73910.t1 MTR_7g114560 82.143 280 50 0 1 280 166 445 6.86e-179 501
MS.gene73910.t1 MTR_7g114550 81.071 280 53 0 1 280 166 445 6.74e-178 498
MS.gene73910.t1 MTR_7g114520 77.936 281 61 1 1 280 168 448 7.92e-168 473
MS.gene73910.t1 MTR_7g114510 75.089 281 69 1 1 280 26 306 1.28e-163 457
MS.gene73910.t1 MTR_5g076700 72.954 281 75 1 1 280 166 446 3.18e-155 441
MS.gene73910.t1 MTR_7g114470 71.986 282 77 2 1 280 167 448 9.30e-154 437
MS.gene73910.t1 MTR_7g114420 65.836 281 68 2 1 280 1 254 2.34e-134 380
MS.gene73910.t1 MTR_1g040195 55.197 279 117 5 1 276 142 415 5.24e-106 315
MS.gene73910.t1 MTR_0042s0190 54.643 280 119 5 1 276 1 276 1.11e-102 301
MS.gene73910.t1 MTR_1g081660 53.381 281 128 2 1 280 174 452 3.87e-96 290
MS.gene73910.t1 MTR_1g040215 50.538 279 132 5 1 276 165 440 4.77e-91 277
MS.gene73910.t1 MTR_1g040175 50.000 278 135 4 1 276 165 440 4.07e-90 275
MS.gene73910.t1 MTR_0042s0190 56.132 212 90 3 67 276 1 211 3.21e-79 239
MS.gene73910.t1 MTR_1g040320 45.848 277 112 4 1 276 165 404 4.39e-75 235
MS.gene73910.t1 MTR_1g040315 42.599 277 113 6 1 276 165 396 3.80e-65 209
MS.gene73910.t1 MTR_0502s0010 51.685 178 79 4 1 175 66 239 3.01e-54 176
MS.gene73910.t1 MTR_3g035000 42.152 223 100 5 35 255 43 238 4.51e-47 159
MS.gene73910.t1 MTR_3g098980 30.996 271 175 7 1 268 167 428 6.02e-37 136
MS.gene73910.t1 MTR_8g096530 33.478 230 143 7 1 225 160 384 7.81e-33 125
MS.gene73910.t1 MTR_7g027175 30.736 231 152 4 1 227 169 395 7.88e-31 119
MS.gene73910.t1 MTR_1g053315 29.603 277 184 9 3 272 185 457 1.79e-26 108
MS.gene73910.t1 MTR_3g051820 64.103 78 28 0 203 280 1 78 3.20e-23 91.3
MS.gene73910.t1 MTR_3g112180 30.417 240 150 9 1 231 166 397 1.64e-22 96.7
MS.gene73910.t1 MTR_2g064495 26.690 281 187 8 1 270 155 427 1.12e-20 91.3
MS.gene73910.t1 MTR_4g007540 26.207 290 174 9 1 268 155 426 1.57e-20 90.9
MS.gene73910.t1 MTR_2g105330 26.690 281 187 8 1 270 155 427 1.78e-20 90.9
MS.gene73910.t1 MTR_2g015430 28.028 289 179 10 1 269 159 438 1.35e-19 88.2
MS.gene73910.t1 MTR_8g075610 25.795 283 187 10 1 272 146 416 2.05e-18 84.7
MS.gene73910.t1 MTR_3g071320 26.224 286 184 10 1 271 161 434 2.99e-18 84.3
MS.gene73910.t1 MTR_4g055170 25.862 290 189 11 3 273 171 453 1.41e-16 79.7
MS.gene73910.t1 MTR_6g053810 25.510 294 190 12 3 275 177 462 1.57e-14 73.6
MS.gene73910.t1 MTR_3g026950 23.755 261 161 7 1 229 155 409 7.91e-14 71.6
MS.gene73910.t1 MTR_5g090810 22.680 291 190 10 1 260 159 445 5.35e-13 68.9
MS.gene73910.t1 MTR_4g127650 23.649 296 189 10 1 270 166 450 5.96e-13 68.9
MS.gene73910.t1 MTR_7g085930 28.413 271 141 13 2 229 161 421 8.65e-13 68.6
MS.gene73910.t1 MTR_3g465910 25.974 231 161 6 3 224 173 402 2.49e-12 67.0
MS.gene73910.t1 MTR_3g465990 28.085 235 152 9 3 224 171 401 3.24e-12 66.6
MS.gene73910.t1 MTR_7g086000 24.762 315 179 16 3 276 163 460 3.95e-12 66.2
MS.gene73910.t1 MTR_7g085990 26.000 300 170 14 2 263 157 442 5.73e-12 65.9
MS.gene73910.t1 MTR_3g465930 25.751 233 161 6 3 224 174 405 8.71e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73910.t1 AT3G03480 40.143 279 159 6 1 276 176 449 2.76e-68 219
MS.gene73910.t1 AT5G17540 41.489 282 158 6 1 279 166 443 5.59e-67 215
MS.gene73910.t1 AT3G48720 31.466 232 152 6 1 229 163 390 3.60e-35 131
MS.gene73910.t1 AT5G63560 33.772 228 143 6 1 227 164 384 8.00e-32 122
MS.gene73910.t1 AT5G41040 30.901 233 151 5 1 227 170 398 4.26e-31 120
MS.gene73910.t1 AT5G41040 30.901 233 151 5 1 227 186 414 4.40e-31 120
MS.gene73910.t1 AT1G03390 28.731 268 174 9 3 260 181 441 1.72e-25 105
MS.gene73910.t1 AT5G48930 26.207 290 186 10 2 275 156 433 8.45e-21 91.7
MS.gene73910.t1 AT1G28680 26.596 282 193 7 3 274 165 442 2.68e-20 90.5
MS.gene73910.t1 AT1G27620 27.917 240 157 8 1 231 159 391 6.23e-20 89.4
MS.gene73910.t1 AT2G40230 27.119 236 159 7 1 228 161 391 3.12e-19 87.4
MS.gene73910.t1 AT2G19070 26.821 302 180 13 3 274 159 449 9.23e-18 83.2
MS.gene73910.t1 AT1G28680 30.000 190 125 5 3 188 165 350 5.15e-17 80.5
MS.gene73910.t1 AT3G62160 25.210 238 146 8 1 225 156 374 2.30e-15 75.9
MS.gene73910.t1 AT5G57840 25.418 299 183 11 3 277 157 439 1.04e-13 71.2
MS.gene73910.t1 AT2G25150 25.342 292 188 11 3 275 172 452 9.10e-13 68.6
MS.gene73910.t1 AT1G65450 23.345 287 195 9 3 276 11 285 4.03e-11 62.8
MS.gene73910.t1 AT1G65450 25.106 235 157 7 3 225 175 402 6.11e-11 62.8

Find 0 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAATATGTTCGTATTCATGA+TGG - 51730:24653-24672 None:intergenic 25.0%
! ATCTTATGGTTATTAAGGAA+CGG + 51730:25072-25091 MS.gene73910:CDS 25.0%
!! ATCTTATCACTTCATGTTTT+TGG + 51730:24802-24821 MS.gene73910:CDS 25.0%
AAACCTCTTCATATCTTCAA+AGG - 51730:25297-25316 None:intergenic 30.0%
AAGAATGTAAAAGGAGAAGA+AGG + 51730:25248-25267 MS.gene73910:CDS 30.0%
AGCAGATCTTATGGTTATTA+AGG + 51730:25067-25086 MS.gene73910:CDS 30.0%
ATCCCACATAAGAATGTAAA+AGG + 51730:25239-25258 MS.gene73910:CDS 30.0%
ATTAAAAGCTGAAGTTACAG+AGG + 51730:25028-25047 MS.gene73910:CDS 30.0%
ATTCTTATGTGGGATGATAT+AGG - 51730:25234-25253 None:intergenic 30.0%
GGTGTTTATTTACAACTACA+AGG + 51730:25093-25112 MS.gene73910:CDS 30.0%
TCGTATAAAGTTCAAAGAAG+TGG + 51730:25139-25158 MS.gene73910:CDS 30.0%
! CTCCTTTTACATTCTTATGT+GGG - 51730:25244-25263 None:intergenic 30.0%
! TCTCCTTTTACATTCTTATG+TGG - 51730:25245-25264 None:intergenic 30.0%
! TTTTTCGTCAAATACCATCA+AGG + 51730:24671-24690 MS.gene73910:CDS 30.0%
!! AAGTTCAAAGAAGTGGATTT+TGG + 51730:25146-25165 MS.gene73910:CDS 30.0%
AAACTCATTAGGTTATGCTG+TGG + 51730:24992-25011 MS.gene73910:CDS 35.0%
AAAGAGTTAGATGAGATGCT+TGG + 51730:25320-25339 MS.gene73910:CDS 35.0%
AGAAGAAAGATTGATGAACC+AGG - 51730:24713-24732 None:intergenic 35.0%
ATGGAATAGGGAGATTCTAA+TGG + 51730:24599-24618 MS.gene73910:CDS 35.0%
CATTCAACCTGTATGGAATA+GGG + 51730:24587-24606 MS.gene73910:CDS 35.0%
GAAACTATTCATGAATGCCT+GGG + 51730:24533-24552 MS.gene73910:CDS 35.0%
GAAGAAAGATTGATGAACCA+GGG - 51730:24712-24731 None:intergenic 35.0%
TGAAACTATTCATGAATGCC+TGG + 51730:24532-24551 MS.gene73910:CDS 35.0%
TGTAGTATCTTCTTCCTTGA+TGG - 51730:24688-24707 None:intergenic 35.0%
TTACCGTAATATCCAACAAG+TGG - 51730:24924-24943 None:intergenic 35.0%
! AAGCTTTGTGGAAACTCATT+AGG + 51730:24981-25000 MS.gene73910:CDS 35.0%
! TGTCCTTTGAAGATATGAAG+AGG + 51730:25291-25310 MS.gene73910:CDS 35.0%
!! AAAGAAGTGGATTTTGGATG+GGG + 51730:25152-25171 MS.gene73910:CDS 35.0%
!! CAAAGAAGTGGATTTTGGAT+GGG + 51730:25151-25170 MS.gene73910:CDS 35.0%
!! TCAAAGAAGTGGATTTTGGA+TGG + 51730:25150-25169 MS.gene73910:CDS 35.0%
AACCTTCCATTCAACCTGTA+TGG + 51730:24580-24599 MS.gene73910:CDS 40.0%
AATATCCAACAAGTGGCGAA+TGG - 51730:24917-24936 None:intergenic 40.0%
AGAATCTCCCTATTCCATAC+AGG - 51730:24597-24616 None:intergenic 40.0%
ATTAGGTTATGCTGTGGAGT+TGG + 51730:24998-25017 MS.gene73910:CDS 40.0%
CCATTCAACCTGTATGGAAT+AGG + 51730:24586-24605 MS.gene73910:CDS 40.0%
GCATTCTGTAGCAGATCTTA+TGG + 51730:25058-25077 MS.gene73910:CDS 40.0%
TGATGGTTGCATGTAATGTG+TGG - 51730:24636-24655 None:intergenic 40.0%
! CCTATTCCATACAGGTTGAA+TGG - 51730:24589-24608 None:intergenic 40.0%
! CTAACTGCAATGCTTTTGTG+CGG - 51730:24833-24852 None:intergenic 40.0%
! TCGCCACTTGTTGGATATTA+CGG + 51730:24918-24937 MS.gene73910:CDS 40.0%
! TTCCATACAGGTTGAATGGA+AGG - 51730:24585-24604 None:intergenic 40.0%
!! CACAAAAGCATTGCAGTTAG+AGG + 51730:24833-24852 MS.gene73910:CDS 40.0%
!! CGGTAATTGTTTTGCTTACC+CGG + 51730:24938-24957 MS.gene73910:CDS 40.0%
ATATAGGCTGCTCCAGGAAA+AGG - 51730:25218-25237 None:intergenic 45.0%
CGAATGTCGTACAATGACGA+AGG - 51730:24782-24801 None:intergenic 45.0%
GGAAGAAGATACTACAACCC+TGG + 51730:24692-24711 MS.gene73910:CDS 45.0%
GGTTGCATGTAATGTGTGGT+GGG - 51730:24632-24651 None:intergenic 45.0%
GTACAATGACGAAGGTGAGA+TGG - 51730:24774-24793 None:intergenic 45.0%
TGGTTGCATGTAATGTGTGG+TGG - 51730:24633-24652 None:intergenic 45.0%
! ATGGTGGAGCTGCAAAAAGT+GGG + 51730:25186-25205 MS.gene73910:CDS 45.0%
! TATGGTGGAGCTGCAAAAAG+TGG + 51730:25185-25204 MS.gene73910:CDS 45.0%
CATGAATGCCTGGGCAGAAA+TGG + 51730:24542-24561 MS.gene73910:CDS 50.0%
GTCAACCATTCGCCACTTGT+TGG + 51730:24909-24928 MS.gene73910:CDS 50.0%
TGGTGGAGCTGCAAAAAGTG+GGG + 51730:25187-25206 MS.gene73910:CDS 50.0%
!! AGTGGATTTTGGATGGGGTG+AGG + 51730:25157-25176 MS.gene73910:CDS 50.0%
CATAGCTGCGCTTCGTCTCT+TGG + 51730:24746-24765 MS.gene73910:CDS 55.0%
GAGCTGCAAAAAGTGGGGCT+GGG + 51730:25192-25211 MS.gene73910:CDS 55.0%
GGGATGATATAGGCTGCTCC+AGG - 51730:25224-25243 None:intergenic 55.0%
GTTTCCACAAAGCTTCCCCG+CGG - 51730:24976-24995 None:intergenic 55.0%
! GGATTTTGGATGGGGTGAGG+CGG + 51730:25160-25179 MS.gene73910:CDS 55.0%
GCATCGTCAATGCACGCTCG+AGG + 51730:24880-24899 MS.gene73910:CDS 60.0%
GGAGCTGCAAAAAGTGGGGC+TGG + 51730:25191-25210 MS.gene73910:CDS 60.0%
TCCTCGAGCCATTTCTGCCC+AGG - 51730:24553-24572 None:intergenic 60.0%
ACCACCGCGGGGAAGCTTTG+TGG + 51730:24969-24988 MS.gene73910:CDS 65.0%
GCCTGGGCAGAAATGGCTCG+AGG + 51730:24549-24568 MS.gene73910:CDS 65.0%
GGATGGGGTGAGGCGGTGTA+TGG + 51730:25167-25186 MS.gene73910:CDS 65.0%
TCCACAAAGCTTCCCCGCGG+TGG - 51730:24973-24992 None:intergenic 65.0%
TGGGGTGAGGCGGTGTATGG+TGG + 51730:25170-25189 MS.gene73910:CDS 65.0%
! AGTGGGGCTGGGCCTTTTCC+TGG + 51730:25203-25222 MS.gene73910:CDS 65.0%
CCCGCGGTGGTGACAGCTGC+CGG - 51730:24960-24979 None:intergenic 75.0%
CCCGGCAGCTGTCACCACCG+CGG + 51730:24956-24975 MS.gene73910:CDS 75.0%
CCGCGGTGGTGACAGCTGCC+GGG - 51730:24959-24978 None:intergenic 75.0%
CCGGCAGCTGTCACCACCGC+GGG + 51730:24957-24976 MS.gene73910:CDS 75.0%
CGGCAGCTGTCACCACCGCG+GGG + 51730:24958-24977 MS.gene73910:CDS 75.0%


Chromosome Type Strat End Strand Name
51730 gene 24513 25355 24513 ID=MS.gene73910
51730 mRNA 24513 25355 24513 ID=MS.gene73910.t1;Parent=MS.gene73910
51730 exon 24513 25355 24513 ID=MS.gene73910.t1.exon1;Parent=MS.gene73910.t1
51730 CDS 24513 25355 24513 ID=cds.MS.gene73910.t1;Parent=MS.gene73910.t1
Gene Sequence

>MS.gene73910

ATGAGCGATGGAGCTGGTTTGAAACTATTCATGAATGCCTGGGCAGAAATGGCTCGAGGAGCACATAAACCTTCCATTCAACCTGTATGGAATAGGGAGATTCTAATGGCAAGAGACCCACCACACATTACATGCAACCATCATGAATACGAACATATTTTTTCGTCAAATACCATCAAGGAAGAAGATACTACAACCCTGGTTCATCAATCTTTCTTCTTTAGAACTTCTGACATAGCTGCGCTTCGTCTCTTGGTTCCATCTCACCTTCGTCATTGTACGACATTCGATCTTATCACTTCATGTTTTTGGTGCTGCCGCACAAAAGCATTGCAGTTAGAGGCAGATGAAGAGATACGAATGATGTGCATCGTCAATGCACGCTCGAGGTTTAGCGTCAACCATTCGCCACTTGTTGGATATTACGGTAATTGTTTTGCTTACCCGGCAGCTGTCACCACCGCGGGGAAGCTTTGTGGAAACTCATTAGGTTATGCTGTGGAGTTGGTGAGAAAATTAAAAGCTGAAGTTACAGAGGAATACATGCATTCTGTAGCAGATCTTATGGTTATTAAGGAACGGTGTTTATTTACAACTACAAGGTCTTGTGTTGTTTCAGATGTGACTCGTATAAAGTTCAAAGAAGTGGATTTTGGATGGGGTGAGGCGGTGTATGGTGGAGCTGCAAAAAGTGGGGCTGGGCCTTTTCCTGGAGCAGCCTATATCATCCCACATAAGAATGTAAAAGGAGAAGAAGGTTTCATATTACTAGTTTGTTTGTCCTTTGAAGATATGAAGAGGTTTGCTAAAGAGTTAGATGAGATGCTTGGTAAACAAAATTAA

Protein sequence

>MS.gene73910.t1

MSDGAGLKLFMNAWAEMARGAHKPSIQPVWNREILMARDPPHITCNHHEYEHIFSSNTIKEEDTTTLVHQSFFFRTSDIAALRLLVPSHLRHCTTFDLITSCFWCCRTKALQLEADEEIRMMCIVNARSRFSVNHSPLVGYYGNCFAYPAAVTTAGKLCGNSLGYAVELVRKLKAEVTEEYMHSVADLMVIKERCLFTTTRSCVVSDVTRIKFKEVDFGWGEAVYGGAAKSGAGPFPGAAYIIPHKNVKGEEGFILLVCLSFEDMKRFAKELDEMLGKQN