Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77768.t1 | XP_003628202.1 | 93.6 | 157 | 10 | 0 | 1 | 157 | 1 | 157 | 3.40E-84 | 320.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77768.t1 | Q9SSK5 | 36.2 | 152 | 94 | 3 | 3 | 152 | 7 | 157 | 1.2e-21 | 104.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77768.t1 | B7FHH7 | 93.6 | 157 | 10 | 0 | 1 | 157 | 1 | 157 | 2.4e-84 | 320.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene77768 | -0.811637 | 6.34E-51 | -1.69E-46 |
MS.gene049222 | MS.gene77768 | -0.80076 | 1.24E-48 | -1.69E-46 |
MS.gene04932 | MS.gene77768 | 0.81034 | 1.21E-50 | -1.69E-46 |
MS.gene050170 | MS.gene77768 | -0.831036 | 2.10E-55 | -1.69E-46 |
MS.gene050323 | MS.gene77768 | -0.818545 | 1.85E-52 | -1.69E-46 |
MS.gene050326 | MS.gene77768 | 0.802255 | 6.12E-49 | -1.69E-46 |
MS.gene050328 | MS.gene77768 | 0.806453 | 8.17E-50 | -1.69E-46 |
MS.gene050338 | MS.gene77768 | 0.827403 | 1.60E-54 | -1.69E-46 |
MS.gene050496 | MS.gene77768 | -0.829743 | 4.34E-55 | -1.69E-46 |
MS.gene050577 | MS.gene77768 | -0.816391 | 5.67E-52 | -1.69E-46 |
MS.gene050868 | MS.gene77768 | -0.811339 | 7.36E-51 | -1.69E-46 |
MS.gene050871 | MS.gene77768 | -0.807038 | 6.14E-50 | -1.69E-46 |
MS.gene05104 | MS.gene77768 | 0.804795 | 1.82E-49 | -1.69E-46 |
MS.gene051364 | MS.gene77768 | 0.822096 | 2.84E-53 | -1.69E-46 |
MS.gene051366 | MS.gene77768 | 0.807357 | 5.26E-50 | -1.69E-46 |
MS.gene051422 | MS.gene77768 | 0.811789 | 5.87E-51 | -1.69E-46 |
MS.gene051651 | MS.gene77768 | 0.81686 | 4.45E-52 | -1.69E-46 |
MS.gene051838 | MS.gene77768 | -0.803929 | 2.76E-49 | -1.69E-46 |
MS.gene052503 | MS.gene77768 | -0.815119 | 1.09E-51 | -1.69E-46 |
MS.gene052506 | MS.gene77768 | -0.800418 | 1.45E-48 | -1.69E-46 |
MS.gene052606 | MS.gene77768 | 0.819702 | 1.01E-52 | -1.69E-46 |
MS.gene052823 | MS.gene77768 | -0.822874 | 1.88E-53 | -1.69E-46 |
MS.gene052825 | MS.gene77768 | -0.82087 | 5.46E-53 | -1.69E-46 |
MS.gene053097 | MS.gene77768 | 0.809631 | 1.72E-50 | -1.69E-46 |
MS.gene053421 | MS.gene77768 | 0.826788 | 2.24E-54 | -1.69E-46 |
MS.gene053479 | MS.gene77768 | -0.815805 | 7.66E-52 | -1.69E-46 |
MS.gene054344 | MS.gene77768 | -0.815541 | 8.77E-52 | -1.69E-46 |
MS.gene054706 | MS.gene77768 | 0.822414 | 2.40E-53 | -1.69E-46 |
MS.gene05470 | MS.gene77768 | -0.805671 | 1.19E-49 | -1.69E-46 |
MS.gene055158 | MS.gene77768 | 0.820003 | 8.63E-53 | -1.69E-46 |
MS.gene055251 | MS.gene77768 | 0.81248 | 4.15E-51 | -1.69E-46 |
MS.gene055502 | MS.gene77768 | -0.812117 | 4.98E-51 | -1.69E-46 |
MS.gene055577 | MS.gene77768 | -0.806859 | 6.70E-50 | -1.69E-46 |
MS.gene055730 | MS.gene77768 | 0.800171 | 1.63E-48 | -1.69E-46 |
MS.gene055748 | MS.gene77768 | -0.801036 | 1.09E-48 | -1.69E-46 |
MS.gene055750 | MS.gene77768 | -0.809423 | 1.91E-50 | -1.69E-46 |
MS.gene055751 | MS.gene77768 | -0.802902 | 4.50E-49 | -1.69E-46 |
MS.gene05589 | MS.gene77768 | -0.828842 | 7.18E-55 | -1.69E-46 |
MS.gene056198 | MS.gene77768 | 0.818151 | 2.28E-52 | -1.69E-46 |
MS.gene056200 | MS.gene77768 | 0.803331 | 3.67E-49 | -1.69E-46 |
MS.gene056387 | MS.gene77768 | -0.805195 | 1.50E-49 | -1.69E-46 |
MS.gene056504 | MS.gene77768 | -0.826614 | 2.46E-54 | -1.69E-46 |
MS.gene056694 | MS.gene77768 | 0.816767 | 4.67E-52 | -1.69E-46 |
MS.gene056697 | MS.gene77768 | 0.84997 | 2.30E-60 | -1.69E-46 |
MS.gene056856 | MS.gene77768 | 0.837911 | 3.93E-57 | -1.69E-46 |
MS.gene057261 | MS.gene77768 | 0.812805 | 3.52E-51 | -1.69E-46 |
MS.gene057544 | MS.gene77768 | 0.8005 | 1.40E-48 | -1.69E-46 |
MS.gene057548 | MS.gene77768 | 0.805866 | 1.09E-49 | -1.69E-46 |
MS.gene057549 | MS.gene77768 | 0.822836 | 1.91E-53 | -1.69E-46 |
MS.gene058099 | MS.gene77768 | 0.80705 | 6.11E-50 | -1.69E-46 |
MS.gene058111 | MS.gene77768 | 0.80155 | 8.54E-49 | -1.69E-46 |
MS.gene058157 | MS.gene77768 | -0.811531 | 6.68E-51 | -1.69E-46 |
MS.gene058334 | MS.gene77768 | 0.846763 | 1.77E-59 | -1.69E-46 |
MS.gene058382 | MS.gene77768 | 0.964694 | 1.19E-123 | -1.69E-46 |
MS.gene058838 | MS.gene77768 | -0.830548 | 2.76E-55 | -1.69E-46 |
MS.gene059023 | MS.gene77768 | -0.807525 | 4.85E-50 | -1.69E-46 |
MS.gene05926 | MS.gene77768 | 0.866108 | 3.63E-65 | -1.69E-46 |
MS.gene059315 | MS.gene77768 | 0.810702 | 1.01E-50 | -1.69E-46 |
MS.gene05960 | MS.gene77768 | 0.810755 | 9.85E-51 | -1.69E-46 |
MS.gene059699 | MS.gene77768 | 0.837603 | 4.71E-57 | -1.69E-46 |
MS.gene059701 | MS.gene77768 | 0.80926 | 2.07E-50 | -1.69E-46 |
MS.gene059703 | MS.gene77768 | 0.852501 | 4.43E-61 | -1.69E-46 |
MS.gene06000 | MS.gene77768 | -0.80469 | 1.91E-49 | -1.69E-46 |
MS.gene06027 | MS.gene77768 | -0.823221 | 1.56E-53 | -1.69E-46 |
MS.gene060405 | MS.gene77768 | 0.817001 | 4.14E-52 | -1.69E-46 |
MS.gene060982 | MS.gene77768 | -0.823166 | 1.60E-53 | -1.69E-46 |
MS.gene061044 | MS.gene77768 | 0.838529 | 2.72E-57 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77768.t1 | MTR_8g045520 | 93.631 | 157 | 10 | 0 | 1 | 157 | 1 | 157 | 7.82e-108 | 304 |
MS.gene77768.t1 | MTR_8g045490 | 80.255 | 157 | 30 | 1 | 1 | 157 | 1 | 156 | 6.48e-91 | 261 |
MS.gene77768.t1 | MTR_8g045695 | 79.618 | 157 | 31 | 1 | 1 | 157 | 1 | 156 | 1.38e-89 | 258 |
MS.gene77768.t1 | MTR_8g045400 | 78.981 | 157 | 32 | 1 | 1 | 157 | 1 | 156 | 2.12e-89 | 257 |
MS.gene77768.t1 | MTR_8g045555 | 75.497 | 151 | 37 | 0 | 1 | 151 | 1 | 151 | 1.46e-85 | 248 |
MS.gene77768.t1 | MTR_8g045665 | 76.433 | 157 | 36 | 1 | 1 | 157 | 1 | 156 | 5.94e-85 | 246 |
MS.gene77768.t1 | MTR_8g045300 | 74.359 | 156 | 40 | 0 | 1 | 156 | 1 | 156 | 8.92e-85 | 246 |
MS.gene77768.t1 | MTR_8g045570 | 75.497 | 151 | 37 | 0 | 1 | 151 | 1 | 151 | 1.91e-84 | 244 |
MS.gene77768.t1 | MTR_8g045640 | 75.159 | 157 | 38 | 1 | 1 | 157 | 1 | 156 | 1.21e-83 | 243 |
MS.gene77768.t1 | MTR_8g045735 | 74.194 | 155 | 39 | 1 | 1 | 155 | 1 | 154 | 3.71e-83 | 241 |
MS.gene77768.t1 | MTR_8g045560 | 72.611 | 157 | 42 | 1 | 1 | 157 | 1 | 156 | 2.02e-80 | 234 |
MS.gene77768.t1 | MTR_1g030810 | 41.558 | 154 | 87 | 2 | 1 | 152 | 1 | 153 | 2.27e-38 | 128 |
MS.gene77768.t1 | MTR_1g030820 | 37.662 | 154 | 93 | 2 | 1 | 152 | 1 | 153 | 7.22e-37 | 124 |
MS.gene77768.t1 | MTR_1g030840 | 35.897 | 156 | 92 | 4 | 1 | 149 | 1 | 155 | 2.37e-27 | 100 |
MS.gene77768.t1 | MTR_8g012550 | 31.333 | 150 | 100 | 3 | 6 | 154 | 8 | 155 | 3.60e-25 | 94.7 |
MS.gene77768.t1 | MTR_1g031640 | 34.694 | 147 | 87 | 5 | 7 | 151 | 7 | 146 | 8.89e-24 | 90.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77768.t1 | AT5G28010 | 34.211 | 152 | 97 | 3 | 3 | 152 | 15 | 165 | 2.21e-26 | 98.2 |
MS.gene77768.t1 | AT5G28010 | 34.211 | 152 | 97 | 3 | 3 | 152 | 15 | 165 | 2.21e-26 | 98.2 |
MS.gene77768.t1 | AT1G70890 | 36.184 | 152 | 94 | 3 | 3 | 152 | 7 | 157 | 4.39e-26 | 97.1 |
MS.gene77768.t1 | AT1G70840 | 32.895 | 152 | 99 | 3 | 3 | 152 | 20 | 170 | 8.84e-24 | 91.7 |
MS.gene77768.t1 | AT1G23120 | 31.944 | 144 | 93 | 3 | 10 | 153 | 10 | 148 | 1.62e-23 | 90.1 |
MS.gene77768.t1 | AT1G70830 | 32.895 | 152 | 99 | 3 | 3 | 152 | 22 | 172 | 6.21e-23 | 89.4 |
MS.gene77768.t1 | AT1G23120 | 31.944 | 144 | 93 | 3 | 10 | 153 | 60 | 198 | 6.98e-23 | 90.1 |
MS.gene77768.t1 | AT5G28000 | 31.579 | 152 | 101 | 3 | 3 | 152 | 13 | 163 | 1.05e-22 | 88.6 |
MS.gene77768.t1 | AT1G70830 | 32.895 | 152 | 99 | 3 | 3 | 152 | 22 | 172 | 1.17e-22 | 89.4 |
MS.gene77768.t1 | AT1G70870 | 36.424 | 151 | 83 | 4 | 1 | 151 | 1 | 138 | 3.26e-22 | 86.7 |
MS.gene77768.t1 | AT1G70830 | 32.895 | 152 | 99 | 3 | 3 | 152 | 22 | 172 | 4.30e-22 | 89.0 |
MS.gene77768.t1 | AT1G70830 | 32.895 | 152 | 99 | 3 | 3 | 152 | 137 | 287 | 8.98e-22 | 89.0 |
MS.gene77768.t1 | AT1G70830 | 28.421 | 95 | 67 | 1 | 59 | 152 | 31 | 125 | 5.31e-11 | 59.7 |
MS.gene77768.t1 | AT1G70830 | 32.895 | 152 | 99 | 3 | 3 | 152 | 22 | 172 | 1.11e-21 | 89.4 |
MS.gene77768.t1 | AT1G70830 | 32.895 | 152 | 99 | 3 | 3 | 152 | 184 | 334 | 2.59e-21 | 88.6 |
MS.gene77768.t1 | AT1G70850 | 32.450 | 151 | 99 | 3 | 3 | 151 | 9 | 158 | 1.50e-21 | 87.4 |
MS.gene77768.t1 | AT1G70850 | 32.450 | 151 | 99 | 3 | 3 | 151 | 9 | 158 | 4.20e-21 | 87.8 |
MS.gene77768.t1 | AT1G70850 | 33.099 | 142 | 92 | 3 | 13 | 152 | 175 | 315 | 5.11e-21 | 87.4 |
MS.gene77768.t1 | AT1G70850 | 32.450 | 151 | 99 | 3 | 3 | 151 | 9 | 158 | 4.20e-21 | 87.8 |
MS.gene77768.t1 | AT1G70850 | 33.099 | 142 | 92 | 3 | 13 | 152 | 175 | 315 | 5.11e-21 | 87.4 |
MS.gene77768.t1 | AT1G24020 | 32.468 | 154 | 100 | 3 | 1 | 152 | 1 | 152 | 1.21e-18 | 77.8 |
MS.gene77768.t1 | AT1G24020 | 32.468 | 154 | 100 | 3 | 1 | 152 | 1 | 152 | 1.21e-18 | 77.8 |
MS.gene77768.t1 | AT1G23130 | 27.152 | 151 | 108 | 2 | 3 | 152 | 10 | 159 | 1.79e-18 | 77.4 |
MS.gene77768.t1 | AT4G23670 | 34.194 | 155 | 93 | 4 | 1 | 151 | 1 | 150 | 2.11e-18 | 77.0 |
MS.gene77768.t1 | AT1G70880 | 28.289 | 152 | 106 | 3 | 3 | 152 | 8 | 158 | 3.90e-18 | 76.6 |
MS.gene77768.t1 | AT1G14930 | 30.263 | 152 | 103 | 3 | 1 | 151 | 1 | 150 | 1.27e-17 | 75.1 |
MS.gene77768.t1 | AT1G35260 | 28.082 | 146 | 101 | 3 | 9 | 152 | 8 | 151 | 4.33e-16 | 71.2 |
MS.gene77768.t1 | AT4G23680 | 30.323 | 155 | 99 | 4 | 1 | 151 | 1 | 150 | 9.30e-16 | 70.5 |
MS.gene77768.t1 | AT2G01520 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 1.01e-15 | 70.1 |
MS.gene77768.t1 | AT1G35310 | 26.056 | 142 | 102 | 3 | 13 | 153 | 12 | 151 | 3.38e-14 | 66.2 |
MS.gene77768.t1 | AT4G14060 | 29.677 | 155 | 100 | 4 | 1 | 151 | 1 | 150 | 4.40e-14 | 65.9 |
MS.gene77768.t1 | AT1G14940 | 29.139 | 151 | 104 | 3 | 1 | 150 | 1 | 149 | 5.66e-14 | 65.9 |
MS.gene77768.t1 | AT1G14950 | 28.750 | 160 | 105 | 4 | 1 | 156 | 1 | 155 | 1.49e-13 | 64.7 |
MS.gene77768.t1 | AT1G30990 | 30.464 | 151 | 101 | 4 | 1 | 150 | 1 | 148 | 1.60e-13 | 64.3 |
MS.gene77768.t1 | AT2G01530 | 27.632 | 152 | 107 | 3 | 1 | 151 | 1 | 150 | 4.99e-13 | 63.2 |
MS.gene77768.t1 | AT3G26460 | 30.380 | 158 | 96 | 6 | 1 | 151 | 1 | 151 | 8.22e-11 | 57.4 |
Find 35 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGGTACTTACAAGCTCTT+TGG | 0.306715 | 8.1:+59892485 | MS.gene77768:CDS |
ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.1:+59892570 | MS.gene77768:CDS |
AAGGTACTTACAAGCTCTTT+GGG | 0.349654 | 8.1:+59892486 | MS.gene77768:CDS |
CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8.1:-59892547 | None:intergenic |
AGATATTGATGAGCACTATA+AGG | 0.414096 | 8.1:+59892511 | MS.gene77768:CDS |
GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8.1:+59891661 | MS.gene77768:CDS |
CATCCTTGAAGTAATTGATA+AGG | 0.438738 | 8.1:+59892544 | MS.gene77768:CDS |
ATCTTCACCCTCATGCAGCT+TGG | 0.445602 | 8.1:-59891770 | None:intergenic |
AAGTAGTCCATCCAGCCATT+TGG | 0.456227 | 8.1:-59892632 | None:intergenic |
AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.1:+59891814 | MS.gene77768:CDS |
ATCCTTGAAGTAATTGATAA+GGG | 0.486541 | 8.1:+59892545 | MS.gene77768:CDS |
TGAAATAACAACAGATGGTA+AGG | 0.489687 | 8.1:+59892415 | MS.gene77768:intron |
AGCTGCATGAGGGTGAAGAT+TGG | 0.493681 | 8.1:+59891773 | MS.gene77768:CDS |
TATGACTTATAGAGCAACCT+TGG | 0.515175 | 8.1:-59892699 | None:intergenic |
TGATGCTCATCTTGTCAAGC+AGG | 0.523708 | 8.1:+59892676 | MS.gene77768:CDS |
ATATTGACCCTCCAAATGGC+TGG | 0.527845 | 8.1:+59892621 | MS.gene77768:CDS |
GAGGATATTGACCCTCCAAA+TGG | 0.539495 | 8.1:+59892617 | MS.gene77768:CDS |
GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8.1:+59891662 | MS.gene77768:CDS |
ATTGATGAACAACACAAGAA+AGG | 0.543540 | 8.1:+59892467 | MS.gene77768:CDS |
AGATTGGCATCACACTGATT+CGG | 0.545548 | 8.1:+59891789 | MS.gene77768:CDS |
GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8.1:+59892551 | MS.gene77768:CDS |
TAGTCCATCCAGCCATTTGG+AGG | 0.551025 | 8.1:-59892629 | None:intergenic |
ACACTGATTCGGTCAAACAC+TGG | 0.556043 | 8.1:+59891800 | MS.gene77768:CDS |
TGACCCTCCAAATGGCTGGA+TGG | 0.557517 | 8.1:+59892625 | MS.gene77768:CDS |
GGATCAAAACACCCGCTGAA+AGG | 0.578575 | 8.1:+59891683 | MS.gene77768:CDS |
TCATCTTGTCAAGCAGGCCA+AGG | 0.591246 | 8.1:+59892682 | MS.gene77768:CDS |
TCATGAAACCAAGCTGCATG+AGG | 0.602712 | 8.1:+59891762 | MS.gene77768:CDS |
AGGTACTTACAAGCTCTTTG+GGG | 0.621914 | 8.1:+59892487 | MS.gene77768:CDS |
CATGAAACCAAGCTGCATGA+GGG | 0.630684 | 8.1:+59891763 | MS.gene77768:CDS |
AGTTTGAAGAACCTTTCAGC+GGG | 0.631322 | 8.1:-59891694 | None:intergenic |
GGTACTTACAAGCTCTTTGG+GGG | 0.640678 | 8.1:+59892488 | MS.gene77768:CDS |
GGTACACACATGTCATGAGA+AGG | 0.648648 | 8.1:+59892436 | MS.gene77768:CDS |
AGTCCATCCAGCCATTTGGA+GGG | 0.649199 | 8.1:-59892628 | None:intergenic |
TAGTTTGAAGAACCTTTCAG+CGG | 0.662028 | 8.1:-59891695 | None:intergenic |
TGAATATGAGAAGATCAATG+AGG | 0.699788 | 8.1:+59892598 | MS.gene77768:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATAATATTTGTCTAATA+TGG | + | chr8.1:59892231-59892250 | MS.gene77768:intron | 10.0% |
!! | AATCTTACTAAAAAATGTTA+AGG | - | chr8.1:59892354-59892373 | None:intergenic | 15.0% |
!! | TAGACAAATATTATTATTGA+TGG | - | chr8.1:59892228-59892247 | None:intergenic | 15.0% |
!! | AATTAAAGAGATGTACAAAA+AGG | + | chr8.1:59892323-59892342 | MS.gene77768:intron | 20.0% |
!! | ACAAATATTATTATTGATGG+TGG | - | chr8.1:59892225-59892244 | None:intergenic | 20.0% |
!! | CTTACTAAAAAATTGTACAA+CGG | - | chr8.1:59891986-59892005 | None:intergenic | 20.0% |
!!! | GATCTCTAAAAAATGTTTAA+GGG | + | chr8.1:59892253-59892272 | MS.gene77768:intron | 20.0% |
! | AGCAAAAAATTGTACAATAC+TGG | - | chr8.1:59892189-59892208 | None:intergenic | 25.0% |
! | ATCCTTGAAGTAATTGATAA+GGG | + | chr8.1:59892545-59892564 | MS.gene77768:CDS | 25.0% |
! | GATCCTTATTAAAAATGGAA+AGG | - | chr8.1:59892167-59892186 | None:intergenic | 25.0% |
! | GTAAACTTATTACTGAACTT+GGG | + | chr8.1:59891662-59891681 | MS.gene77768:CDS | 25.0% |
! | TACTGGATCCTTATTAAAAA+TGG | - | chr8.1:59892172-59892191 | None:intergenic | 25.0% |
! | TGTTGTACTACAAATGATAA+CGG | - | chr8.1:59892283-59892302 | None:intergenic | 25.0% |
!! | GGATCTCTAAAAAATGTTTA+AGG | + | chr8.1:59892252-59892271 | MS.gene77768:intron | 25.0% |
!!! | CTAAAACTGCTGTTATTTTT+TGG | + | chr8.1:59892379-59892398 | MS.gene77768:intron | 25.0% |
!!! | GATCCTTTCCATTTTTAATA+AGG | + | chr8.1:59892161-59892180 | MS.gene77768:intron | 25.0% |
AGATATTGATGAGCACTATA+AGG | + | chr8.1:59892511-59892530 | MS.gene77768:CDS | 30.0% | |
ATTGATGAACAACACAAGAA+AGG | + | chr8.1:59892467-59892486 | MS.gene77768:CDS | 30.0% | |
CATCCTTGAAGTAATTGATA+AGG | + | chr8.1:59892544-59892563 | MS.gene77768:CDS | 30.0% | |
GGTAAACTTATTACTGAACT+TGG | + | chr8.1:59891661-59891680 | MS.gene77768:CDS | 30.0% | |
TGAAATAACAACAGATGGTA+AGG | + | chr8.1:59892415-59892434 | MS.gene77768:intron | 30.0% | |
TGAATATGAGAAGATCAATG+AGG | + | chr8.1:59892598-59892617 | MS.gene77768:CDS | 30.0% | |
!! | ACCATCTGTTGTTATTTCAT+GGG | - | chr8.1:59892414-59892433 | None:intergenic | 30.0% |
!! | TACCATCTGTTGTTATTTCA+TGG | - | chr8.1:59892415-59892434 | None:intergenic | 30.0% |
AAACACTGGACTTATGTCAT+AGG | + | chr8.1:59891814-59891833 | MS.gene77768:CDS | 35.0% | |
CAAAATCATCTTGTTGGACT+TGG | + | chr8.1:59891869-59891888 | MS.gene77768:intron | 35.0% | |
CACCCTTATCAATTACTTCA+AGG | - | chr8.1:59892550-59892569 | None:intergenic | 35.0% | |
GAAGTAATTGATAAGGGTGA+TGG | + | chr8.1:59892551-59892570 | MS.gene77768:CDS | 35.0% | |
TAGTTTGAAGAACCTTTCAG+CGG | - | chr8.1:59891698-59891717 | None:intergenic | 35.0% | |
TGCCAACAAAATCATCTTGT+TGG | + | chr8.1:59891863-59891882 | MS.gene77768:intron | 35.0% | |
! | AAGGTACTTACAAGCTCTTT+GGG | + | chr8.1:59892486-59892505 | MS.gene77768:CDS | 35.0% |
! | GTCCAACAAGATGATTTTGT+TGG | - | chr8.1:59891868-59891887 | None:intergenic | 35.0% |
!! | AAAGGTACTTACAAGCTCTT+TGG | + | chr8.1:59892485-59892504 | MS.gene77768:CDS | 35.0% |
AGGTACTTACAAGCTCTTTG+GGG | + | chr8.1:59892487-59892506 | MS.gene77768:CDS | 40.0% | |
AGTTTGAAGAACCTTTCAGC+GGG | - | chr8.1:59891697-59891716 | None:intergenic | 40.0% | |
GCCCATGAAATAACAACAGA+TGG | + | chr8.1:59892410-59892429 | MS.gene77768:intron | 40.0% | |
! | AGATTGGCATCACACTGATT+CGG | + | chr8.1:59891789-59891808 | MS.gene77768:CDS | 40.0% |
AAGTAGTCCATCCAGCCATT+TGG | - | chr8.1:59892635-59892654 | None:intergenic | 45.0% | |
ATATTGACCCTCCAAATGGC+TGG | + | chr8.1:59892621-59892640 | MS.gene77768:CDS | 45.0% | |
CATGAAACCAAGCTGCATGA+GGG | + | chr8.1:59891763-59891782 | MS.gene77768:CDS | 45.0% | |
GAGGATATTGACCCTCCAAA+TGG | + | chr8.1:59892617-59892636 | MS.gene77768:CDS | 45.0% | |
GGTACACACATGTCATGAGA+AGG | + | chr8.1:59892436-59892455 | MS.gene77768:CDS | 45.0% | |
GGTACTTACAAGCTCTTTGG+GGG | + | chr8.1:59892488-59892507 | MS.gene77768:CDS | 45.0% | |
TCATGAAACCAAGCTGCATG+AGG | + | chr8.1:59891762-59891781 | MS.gene77768:CDS | 45.0% | |
TGATGCTCATCTTGTCAAGC+AGG | + | chr8.1:59892676-59892695 | MS.gene77768:CDS | 45.0% | |
!! | ACACTGATTCGGTCAAACAC+TGG | + | chr8.1:59891800-59891819 | MS.gene77768:CDS | 45.0% |
AGCTGCATGAGGGTGAAGAT+TGG | + | chr8.1:59891773-59891792 | MS.gene77768:CDS | 50.0% | |
AGTCCATCCAGCCATTTGGA+GGG | - | chr8.1:59892631-59892650 | None:intergenic | 50.0% | |
ATCTTCACCCTCATGCAGCT+TGG | - | chr8.1:59891773-59891792 | None:intergenic | 50.0% | |
ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.1:59892570-59892589 | MS.gene77768:CDS | 50.0% | |
GGATCAAAACACCCGCTGAA+AGG | + | chr8.1:59891683-59891702 | MS.gene77768:CDS | 50.0% | |
TAGTCCATCCAGCCATTTGG+AGG | - | chr8.1:59892632-59892651 | None:intergenic | 50.0% | |
TCATCTTGTCAAGCAGGCCA+AGG | + | chr8.1:59892682-59892701 | MS.gene77768:CDS | 50.0% | |
TGACCCTCCAAATGGCTGGA+TGG | + | chr8.1:59892625-59892644 | MS.gene77768:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 59891649 | 59892715 | 59891649 | ID=MS.gene77768 |
chr8.1 | mRNA | 59891649 | 59892715 | 59891649 | ID=MS.gene77768.t1;Parent=MS.gene77768 |
chr8.1 | exon | 59891649 | 59891835 | 59891649 | ID=MS.gene77768.t1.exon1;Parent=MS.gene77768.t1 |
chr8.1 | CDS | 59891649 | 59891835 | 59891649 | ID=cds.MS.gene77768.t1;Parent=MS.gene77768.t1 |
chr8.1 | exon | 59892429 | 59892715 | 59892429 | ID=MS.gene77768.t1.exon2;Parent=MS.gene77768.t1 |
chr8.1 | CDS | 59892429 | 59892715 | 59892429 | ID=cds.MS.gene77768.t1;Parent=MS.gene77768.t1 |
Gene Sequence |
Protein sequence |