AlfalfaGEDB | MS.gene30456

M. sativa cultivar XinJiangDaYe / MS.gene30456

KEGG: K01051
GO: GO:0003674 GO:0003824 GO:0004857 GO:0008150 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0042545 GO:0045229 GO:0052689 GO:0071554 GO:0071555 GO:0071840 GO:0098772
PFAM: PF01095.22 PF04043.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30456.t1	XP_003622688.1	97.8	554	12	0	1	554	1	554	6.0e-309	1069.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30456.t1	P09607	57.1	553	226	7	4	554	5	548	2.0e-167	590.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30456.t1	G7KVX9	97.8	554	12	0	1	554	1	554	4.3e-309	1069.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene30456	-0.837144	6.18E-57	-1.69E-46
MS.gene04921	MS.gene30456	0.820271	7.49E-53	-1.69E-46
MS.gene049222	MS.gene30456	-0.826837	2.18E-54	-1.69E-46
MS.gene049232	MS.gene30456	-0.811204	7.87E-51	-1.69E-46
MS.gene049285	MS.gene30456	-0.821103	4.82E-53	-1.69E-46
MS.gene049320	MS.gene30456	-0.814281	1.67E-51	-1.69E-46
MS.gene049611	MS.gene30456	0.803296	3.73E-49	-1.69E-46
MS.gene049633	MS.gene30456	-0.824072	9.84E-54	-1.69E-46
MS.gene050082	MS.gene30456	0.842712	2.19E-58	-1.69E-46
MS.gene05010	MS.gene30456	-0.801427	9.05E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30456.t1	MTR_7g050870	97.834	554	12	0	1	554	1	554	0.0	1125
MS.gene30456.t1	MTR_7g050950	85.199	554	81	1	1	554	1	553	0.0	966
MS.gene30456.t1	MTR_7g050980	83.063	555	93	1	1	554	1	555	0.0	965
MS.gene30456.t1	MTR_7g108905	46.416	558	264	10	24	554	7	556	5.49e-163	475
MS.gene30456.t1	MTR_2g044880	52.902	448	191	9	117	554	88	525	4.66e-158	462
MS.gene30456.t1	MTR_1g008140	47.551	490	220	9	97	554	123	607	8.26e-157	461
MS.gene30456.t1	MTR_8g023310	47.826	529	233	11	52	554	78	589	1.62e-155	457
MS.gene30456.t1	MTR_4g087980	49.677	465	213	7	99	554	64	516	6.39e-152	446
MS.gene30456.t1	MTR_3g091380	42.222	585	286	13	10	554	25	597	2.30e-149	442
MS.gene30456.t1	MTR_4g025730	46.704	531	247	14	31	554	8	509	2.67e-147	434

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30456.t1	AT1G11580	56.838	563	223	8	3	554	4	557	0.0	615
MS.gene30456.t1	AT1G11580	56.838	563	223	8	3	554	25	578	0.0	615
MS.gene30456.t1	AT5G53370	47.257	474	230	7	97	554	116	585	1.24e-151	447
MS.gene30456.t1	AT5G53370	47.257	474	230	7	97	554	152	621	2.13e-151	448
MS.gene30456.t1	AT3G43270	47.083	480	222	8	97	554	56	525	2.95e-147	434
MS.gene30456.t1	AT3G49220	47.807	456	214	7	116	554	148	596	2.68e-146	434
MS.gene30456.t1	AT3G49220	47.807	456	214	7	116	554	193	641	4.89e-146	435
MS.gene30456.t1	AT3G14310	45.956	544	233	12	52	554	69	592	6.79e-145	430
MS.gene30456.t1	AT4G33220	47.527	465	212	8	117	554	64	523	8.82e-143	422
MS.gene30456.t1	AT1G53830	46.067	534	238	11	53	550	64	583	4.04e-142	423

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Find 125 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATACCTAGGTCGTCCA+TGG	0.540989	7.4:-51052937	MS.gene30456:CDS
AAAGACGAATGTGATGCTAG+TGG	0.714733	7.4:-51053517	MS.gene30456:CDS
AAAGATAAAGTCAACAGTAC+CGG	0.568890	7.4:+51053138	None:intergenic
AAATGCTTTGAATGACTGTG+AGG	0.716518	7.4:-51054024	MS.gene30456:CDS
AACCATGCAACTTGCTTGGA+TGG	0.443880	7.4:-51053891	MS.gene30456:CDS
AAGACGAATGTGATGCTAGT+GGG	0.651085	7.4:-51053516	MS.gene30456:CDS
AAGTAAGGATCGAAGGCTTT+TGG	0.339991	7.4:-51053709	MS.gene30456:CDS
AAGTTGCGGTGTTCTGGTTT+GGG	0.358889	7.4:+51053020	None:intergenic
AATCCGTCATTAGCCTTTGG+AGG	0.516912	7.4:+51053774	None:intergenic
AATGTGATGCTAGTGGGTGA+TGG	0.631271	7.4:-51053510	MS.gene30456:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATAAAGTCAACAGTAC+CGG	+	chr7.4:51053897-51053916	None:intergenic	30.0%
AAATCACTATCCTAGAGAAA+TGG	+	chr7.4:51053658-51053677	None:intergenic	30.0%
ATATGAGTGTACTCAATTTG+TGG	+	chr7.4:51052900-51052919	None:intergenic	30.0%
TACAAAGAGAACGTAGAAAT+TGG	-	chr7.4:51053486-51053505	MS.gene30456:CDS	30.0%
TATCATAAAAAATGCTGCTG+AGG	-	chr7.4:51054297-51054316	MS.gene30456:CDS	30.0%
TTATGATAGCTACTAAAGAG+AGG	+	chr7.4:51052720-51052739	None:intergenic	30.0%
TTTACCATTTCCATTTCTCT+AGG	-	chr7.4:51053645-51053664	MS.gene30456:CDS	30.0%
AATGTTTGGTTGAAGAACAC+AGG	-	chr7.4:51054355-51054374	MS.gene30456:CDS	35.0%
ACATTGCTGAATTGAAGTTG+CGG	+	chr7.4:51054029-51054048	None:intergenic	35.0%
ATCTTCAGTTGGGGATATAA+AGG	-	chr7.4:51053347-51053366	MS.gene30456:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	51052652	51054402	51052652	ID=MS.gene30456
chr7.4	mRNA	51052652	51054402	51052652	ID=MS.gene30456.t1;Parent=MS.gene30456
chr7.4	exon	51053436	51054402	51053436	ID=MS.gene30456.t1.exon1;Parent=MS.gene30456.t1
chr7.4	CDS	51053436	51054402	51053436	ID=cds.MS.gene30456.t1;Parent=MS.gene30456.t1
chr7.4	exon	51052652	51053349	51052652	ID=MS.gene30456.t1.exon2;Parent=MS.gene30456.t1
chr7.4	CDS	51052652	51053349	51052652	ID=cds.MS.gene30456.t1;Parent=MS.gene30456.t1

Gene Sequence

>MS.gene30456

ATGGCTAGCCAACAATCTTTGCTAGACAAGCCAAGAAAATCCATTCCAAAAACATTTTGGTTAATCCTCTCTTTAGTAGCTATCATAAGTTCATCAGCCCTTATTATTTCTCATCTCAACAAACCTATCTCCTTCTTCAATCTCTCCTCAGCTCCTAATCTATGTGAGCATGCTCTTGATACAAAATCATGCTTAACTCATGTATCAGAAGTGGTTCAAGGTTCAACTTTGTCTAATACCAAAGACCACAAATTGAGTACACTCATATCGTTGTTAACCAAATCGACTGAACACATTCGAAAGGTCATGGACACGGCTAATGTTATCAAACGCCGTGTTAATAGCCCTAGAGAGGAAAATGCTTTGAATGACTGTGAGGAATTAATGGATTTGTCCATGGATAGAGTTTGGGACTCAGTGTTGACTCTAACAAAGAATAACATTGACTCACAGCATGATGCACACACATGGTTAAGTAGTGTGCTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTTCATCTCGGGTCGTTATGGAGAGTGATCTTCAGGACTTGATCTCCAGAGCTAGATCTTCTCTTGCTGTGCTTGTTTCTGTCTTGCCTCCAAAGGCTAATGACGGATTCATTGATGAAAAATTGAATGGCGATTTTCCATCTTGGGTGACAAGTAAGGATCGAAGGCTTTTGGAATCTTCAGTTGGGGATATAAAGGCCAATGTTGTGGTGGCTCAGGACGGGAGCGGTAAGTTCAAGACTGTGGCTCAAGCTGTGGCATCTGCACCAGACAATGGTAAGACAAGGTATGTTATCTATGTGAAAAAGGGAACATACAAAGAGAACGTAGAAATTGGCAAGAAAAAGACGAATGTGATGCTAGTGGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTAAATTTCATAGATGGAACAACCACCTTCAAAAGTGCAACTGTTGGTATGTATTTTTCCCTCTTTTCTGTATTTACCATTTCCATTTCTCTAGGATAGTGATTTTTATTGATGTATAATTTGGTTTTGTAGCTGCTGTTGGAGATGGGTTTATTGCTCAGGACATTAGGTTCCAAAACACAGCAGGCCCAGAGAAGCACCAGGCAGTTGCTCTTCGCGTCGGCGCTGATCAATCTGTCATCAACCGCTGCAAAATTGACGCATTTCAAGACACACTCTACGCACACTCCAACCGACAATTTTACCGTGACTCCTACATTACCGGTACTGTTGACTTTATCTTTGGAAACGCAGCTGTTGTGTTCCAGAAGAGCAAACTGGCAGCCCGAAAGCCCATGAGCAACCAAAAAAACATGGTCACTGCACAAGGTCGCGAAGACCCAAACCAGAACACCGCAACTTCAATTCAGCAATGTGACGTAATACCAAGCTCAGACCTCAAGCCTGTGCAAGGCTCCTTCAAAACATACCTAGGTCGTCCATGGAAGAAATACTCCAGGACTGTTGTGTTGCAGTCTGTCGTGGACGGCCACATTGACCCAGCAGGATGGGCTGAATGGGATGCCGCGAGTAAGGACTTTTTGCAAACATTGTATTATGGAGAGTACATGAACAGTGGAGCAGGTGCTGGTACCAGTAAGAGAGTGACTTGGCCAGGTTATCATATCATAAAAAATGCTGCTGAGGCAAGTAAGTTTACAGTAACACAGCTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGGGTGGCCTTCATTGAAGGCCTGTAG

Protein sequence

>MS.gene30456.t1

MASQQSLLDKPRKSIPKTFWLILSLVAIISSSALIISHLNKPISFFNLSSAPNLCEHALDTKSCLTHVSEVVQGSTLSNTKDHKLSTLISLLTKSTEHIRKVMDTANVIKRRVNSPREENALNDCEELMDLSMDRVWDSVLTLTKNNIDSQHDAHTWLSSVLTNHATCLDGLEGSSRVVMESDLQDLISRARSSLAVLVSVLPPKANDGFIDEKLNGDFPSWVTSKDRRLLESSVGDIKANVVVAQDGSGKFKTVAQAVASAPDNGKTRYVIYVKKGTYKENVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFKSATVAAVGDGFIAQDIRFQNTAGPEKHQAVALRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKSKLAARKPMSNQKNMVTAQGREDPNQNTATSIQQCDVIPSSDLKPVQGSFKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAGTSKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTGVAFIEGL