AlfalfaGEDB | MS.gene52976

M. sativa cultivar XinJiangDaYe / MS.gene52976

KEGG: -
GO: -
PFAM: PF04755.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52976.t1	XP_003590829.1	97.5	276	7	0	1	276	1	276	5.90E-148	533.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52976.t1	Q9LW57	58.1	267	106	1	10	276	24	284	2.1e-85	317.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52976.t1	G7I4U4	97.5	276	7	0	1	276	1	276	4.2e-148	533.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene52976	0.893507	5.90E-75	-1.69E-46
MS.gene049217	MS.gene52976	0.811129	8.17E-51	-1.69E-46
MS.gene049222	MS.gene52976	0.864039	1.62E-64	-1.69E-46
MS.gene049232	MS.gene52976	0.865617	5.19E-65	-1.69E-46
MS.gene049285	MS.gene52976	0.880541	5.04E-70	-1.69E-46
MS.gene049320	MS.gene52976	0.881071	3.25E-70	-1.69E-46
MS.gene04939	MS.gene52976	0.805209	1.49E-49	-1.69E-46
MS.gene049609	MS.gene52976	0.849137	3.92E-60	-1.69E-46
MS.gene049633	MS.gene52976	0.896905	2.35E-76	-1.69E-46
MS.gene049657	MS.gene52976	0.806102	9.68E-50	-1.69E-46

Showing 1 to 10 of 184 entries

Previous1 2 3 4 5…19Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52976.t1	MTR_1g075660	97.464	276	7	0	1	276	1	276	0.0	541

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52976.t1	AT3G23400	74.468	188	48	0	89	276	97	284	5.63e-104	304
MS.gene52976.t1	AT3G23400	77.119	118	27	0	89	206	97	214	1.52e-63	199
MS.gene52976.t1	AT3G23400	47.436	156	76	1	10	165	24	173	1.60e-34	124
MS.gene52976.t1	AT3G23400	47.436	156	76	1	10	165	24	173	1.60e-34	124

Showing 1 to 4 of 4 entries

Previous1Next

Find 86 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACAGTGAAGACAAC+CGG	0.437328	1.1:+56634023	MS.gene52976:CDS
AAACCACAGTGAAGACAACC+GGG	0.596707	1.1:+56634024	MS.gene52976:CDS
AAAGGCAGATGCTGCGGCTA+AGG	0.475842	1.1:+56633328	MS.gene52976:CDS
AAATGAAGAAGACCTACAAA+AGG	0.586772	1.1:+56633310	MS.gene52976:CDS
AAGAAGTAGAAAATGGTAGT+AGG	0.359127	1.1:-56632189	None:intergenic
AAGGAACTTGAAGAAGCTGG+AGG	0.698611	1.1:+56633347	MS.gene52976:CDS
AAGTAGAAAATGGTAGTAGG+GGG	0.633244	1.1:-56632186	None:intergenic
AATATAGTGGACCTTCAGTT+GGG	0.531782	1.1:+56633763	MS.gene52976:CDS
AATGTGGCAGTTACTTCAAG+GGG	0.642001	1.1:-56633805	None:intergenic
ACATTGATGCTGTTGCTCCT+AGG	0.511152	1.1:-56632226	None:intergenic

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAGAAGACCTACAAA+AGG	+	chr1.1:56633310-56633329	MS.gene52976:CDS	30.0%
AACTAATATGCACTCAACAT+GGG	-	chr1.1:56632501-56632520	None:intergenic	30.0%
AAGAAGTAGAAAATGGTAGT+AGG	-	chr1.1:56632192-56632211	None:intergenic	30.0%
AATCCTTATGTAGTTGTGTA+AGG	-	chr1.1:56633152-56633171	None:intergenic	30.0%
AGAAGTAGAAAATGGTAGTA+GGG	-	chr1.1:56632191-56632210	None:intergenic	30.0%
ATCAAGTTATTTATCCAGAG+GGG	-	chr1.1:56632695-56632714	None:intergenic	30.0%
ATCAATGTTCTTACTCCAAA+GGG	+	chr1.1:56632241-56632260	MS.gene52976:CDS	30.0%
ATCCTTATGTAGTTGTGTAA+GGG	-	chr1.1:56633151-56633170	None:intergenic	30.0%
CAAGAACAAGAAGTAGAAAA+TGG	-	chr1.1:56632199-56632218	None:intergenic	30.0%
GTAGAATCAAAAGGATTAGA+AGG	-	chr1.1:56632346-56632365	None:intergenic	30.0%

Showing 1 to 10 of 148 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	56632139	56634208	56632139	ID=MS.gene52976
chr1.1	mRNA	56632139	56634208	56632139	ID=MS.gene52976.t1;Parent=MS.gene52976
chr1.1	exon	56632139	56632390	56632139	ID=MS.gene52976.t1.exon1;Parent=MS.gene52976.t1
chr1.1	CDS	56632139	56632390	56632139	ID=cds.MS.gene52976.t1;Parent=MS.gene52976.t1
chr1.1	exon	56633275	56633511	56633275	ID=MS.gene52976.t1.exon2;Parent=MS.gene52976.t1
chr1.1	CDS	56633275	56633511	56633275	ID=cds.MS.gene52976.t1;Parent=MS.gene52976.t1
chr1.1	exon	56633724	56633850	56633724	ID=MS.gene52976.t1.exon3;Parent=MS.gene52976.t1
chr1.1	CDS	56633724	56633850	56633724	ID=cds.MS.gene52976.t1;Parent=MS.gene52976.t1
chr1.1	exon	56633994	56634208	56633994	ID=MS.gene52976.t1.exon4;Parent=MS.gene52976.t1
chr1.1	CDS	56633994	56634208	56633994	ID=cds.MS.gene52976.t1;Parent=MS.gene52976.t1

Gene Sequence

>MS.gene52976

ATGGCTTCCCTCAATCTCCTTCTTCACCCCTCAACTTCTCTCTCTCACCCCCTACTACCATTTTCTACTTCTTGTTCTTGTTTCTTTCCTAGGAGCAACAGCATCAATGTTCTTACTCCAAAGGGTAAACATATTAAGCCTTCATCCCTTATTGTGAAAGCTGCTGCTGAAGCTGATATTTCAATCTCTGGCTCTATTCCAATTCCTTCTAATCCTTTTGATTCTACTTCCCCCTTGAAGTTCAATCTTCTGGTCAGTTTTTTTTTTCTCATTAGCTTAGCTTCTTTGGATGTTGATTTTTCTTAGCTTTTGTTTGACAAATTAAATGGTCAATTTCATGTTTAACTTTAACTATTACTCCCATGTTGAGTGCATATTAGTTATTATAATTGCATAATAAAAATAGGGGAAATAGTTATAGGTTACTGCCTTTGCAAAACAAAAATATATAGATATAGTATAGGTTACATTTTGAATTTATGCATTTGACTTAAGTATCTAAGTTTTATGGATAATCTATTTAGTTAAAATTGTCATTAAAATGTATTTAGGCCCCCTCTGGATAAATAACTTGATTTAGGGTTTGTTTGGAATTTGGATTGACTTGTTTGAGCTTATCTACTGGCATAATCACTTGCTACACTATTTGGGATAACTTATGACAAGCTTTCAAGGATAGCTTATGAAAACAGGTTATAGATTATACGAAAACATTTTGGCTGTATTTTATCTTTTGTTTTAGAGATAGCTTGTTCATAAGCACTTATGCTCTAAGCTGCAAAATAAGCCCGTTTATCTGAACAGGGCAAGCACTTGTAGTATAAGTATTTATCATATAAGGGATTATGTATAAGTTGTAAACGGTCTCACGGAGAGAACTGCTTTCATAAGCTATCTCGGAGAGCTTATAGAAATAAGTTGAAAACAACTTATGGACATGTCATAAGGTGTTTCCATAAACTCTCTGATACAGTAAGTAGATATGCTCAAATAAATCAATCCAAGCAAACCCTTACACAACTACATAAGGATTTTGGAATGGTGGTAAACTTATTTTTATGATTTTCAAGATGATTTTGATGTTGAGCTTTTTATTATTTTATTTTTTGAACTTGTTTGATTTGTTAATGCTGCAGAGTGCTGTTGCTGGGCTAAATAGAGGTCTTGCTGCAAATGAAGAAGACCTACAAAAGGCAGATGCTGCGGCTAAGGAACTTGAAGAAGCTGGAGGATTAGTAGACCTCACAGACAACCTTGATAAGTTGCAAGGAAGATGGAAACTGATATATAGCAGCGCGTTCTCCTCTCGTACTCTAGGTGGGAGCCGTCCTGGACCTCCCACAGGAAGGCTCCTTCCTATAACTCTTGGACAGGTCTGCTACTACTAGCCTGATATAATGATGTAATATTTGCACTAATTGTTCATAACTATCTTTCCTGGAAGTTGCAACTGAGCAACTTGTTAGATTGTCACAAATTATGTTTTAGTCTCATTTCGGTCCTATGTGTGTGCTTTGATCTCCAAAACCGCTGTTCAATAATATGTTTATCAAATGTTTAACAACTGTTTTGTTTTTGCTATTAGGTTTTTCAACGAATTGACATCTTAAGCAAAGATTTTGATAATATAGTGGACCTTCAGTTGGGTGCTCCATGGCCTCTACCGCCCCTTGAAGTAACTGCCACATTAGCTCACAAATTTGAGCTCGTAGGTTAGTTTTATGCTTTCTACTGCATATACATGGTAGCTTTTGCATGATTTTTTTTCTTTTCTTCTATTTGCAAGATATCAAAATTGTAGTATTGTACTGTATTGAGACCGCCTCTTTACTGTGAGTGGTTTGTGATGATTCAGGATCTTCGAAGATCAAGATAATATTTGAGAAAACCACAGTGAAGACAACCGGGACATTTTCACAGTTGCCACCTCTAGATTTGCCTCAAATTCCAGATGCATTGAGGCCACAATCTAATAGAGGAAGTGGTGATTTTGAAGTTACATATCTTGACGCAGATACCCGCGTCACCAGAGGAGATAGAGGCGAGCTAAGGGTCTTTGTGATTGCATAA

Protein sequence

>MS.gene52976.t1

MASLNLLLHPSTSLSHPLLPFSTSCSCFFPRSNSINVLTPKGKHIKPSSLIVKAAAEADISISGSIPIPSNPFDSTSPLKFNLLSAVAGLNRGLAANEEDLQKADAAAKELEEAGGLVDLTDNLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDILSKDFDNIVDLQLGAPWPLPPLEVTATLAHKFELVGSSKIKIIFEKTTVKTTGTFSQLPPLDLPQIPDALRPQSNRGSGDFEVTYLDADTRVTRGDRGELRVFVIA