Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058681.t1 | XP_003624094.1 | 87.7 | 700 | 60 | 3 | 1 | 698 | 1 | 676 | 1.40E-257 | 899 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058681.t1 | Q84WU4 | 55.6 | 700 | 267 | 8 | 1 | 689 | 1 | 667 | 6.7e-128 | 459.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058681.t1 | G7L6Q5 | 87.7 | 700 | 60 | 3 | 1 | 698 | 1 | 676 | 9.8e-258 | 899.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene058681 | 0.803427 | 3.51E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene058681 | 0.802343 | 5.87E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene058681 | 0.800189 | 1.62E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene058681 | 0.80013 | 1.66E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene058681 | 0.813288 | 2.76E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene058681 | 0.836367 | 9.76E-57 | -1.69E-46 |
| MS.gene058681 | MS.gene06133 | 0.80943 | 1.90E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene06372 | 0.80414 | 2.49E-49 | -1.69E-46 |
| MS.gene058681 | MS.gene065593 | 0.80438 | 2.22E-49 | -1.69E-46 |
| MS.gene058681 | MS.gene066746 | 0.816909 | 4.34E-52 | -1.69E-46 |
| MS.gene058681 | MS.gene072116 | 0.839134 | 1.90E-57 | -1.69E-46 |
| MS.gene058681 | MS.gene073387 | 0.803753 | 3.00E-49 | -1.69E-46 |
| MS.gene058681 | MS.gene09111 | 0.801529 | 8.63E-49 | -1.69E-46 |
| MS.gene058681 | MS.gene09600 | 0.800621 | 1.32E-48 | -1.69E-46 |
| MS.gene058681 | MS.gene21056 | 0.809672 | 1.69E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene21826 | 0.820597 | 6.31E-53 | -1.69E-46 |
| MS.gene058681 | MS.gene27059 | 0.812753 | 3.62E-51 | -1.69E-46 |
| MS.gene058681 | MS.gene29233 | 0.80615 | 9.46E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene32685 | 0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene33135 | 0.820101 | 8.19E-53 | -1.69E-46 |
| MS.gene058681 | MS.gene33466 | 0.825544 | 4.42E-54 | -1.69E-46 |
| MS.gene058681 | MS.gene37917 | 0.810205 | 1.29E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene39046 | 0.826095 | 3.27E-54 | -1.69E-46 |
| MS.gene058681 | MS.gene39074 | 0.812316 | 4.51E-51 | -1.69E-46 |
| MS.gene058681 | MS.gene40330 | 0.806991 | 6.29E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene41678 | 0.838134 | 3.44E-57 | -1.69E-46 |
| MS.gene058681 | MS.gene43878 | 0.839257 | 1.77E-57 | -1.69E-46 |
| MS.gene058681 | MS.gene45624 | 0.804534 | 2.06E-49 | -1.69E-46 |
| MS.gene058681 | MS.gene49467 | 0.810151 | 1.33E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene53600 | 0.814156 | 1.78E-51 | -1.69E-46 |
| MS.gene058681 | MS.gene54045 | 0.827551 | 1.47E-54 | -1.69E-46 |
| MS.gene058681 | MS.gene54967 | 0.80123 | 9.93E-49 | -1.69E-46 |
| MS.gene058681 | MS.gene57576 | 0.801528 | 8.63E-49 | -1.69E-46 |
| MS.gene058681 | MS.gene59366 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene058681 | MS.gene74537 | 0.818886 | 1.55E-52 | -1.69E-46 |
| MS.gene058681 | MS.gene75413 | 0.80615 | 9.46E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene79797 | 0.820937 | 5.27E-53 | -1.69E-46 |
| MS.gene058681 | MS.gene80094 | 0.800685 | 1.28E-48 | -1.69E-46 |
| MS.gene058681 | MS.gene85281 | 0.803207 | 3.89E-49 | -1.69E-46 |
| MS.gene058681 | MS.gene87673 | 0.810821 | 9.53E-51 | -1.69E-46 |
| MS.gene058681 | MS.gene89985 | 0.811058 | 8.46E-51 | -1.69E-46 |
| MS.gene058681 | MS.gene90605 | 0.806798 | 6.91E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene97176 | 0.801242 | 9.88E-49 | -1.69E-46 |
| MS.gene058681 | MS.gene98721 | 0.801228 | 9.94E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058681.t1 | MTR_7g079200 | 93.705 | 699 | 18 | 3 | 1 | 697 | 1 | 675 | 0.0 | 1301 |
| MS.gene058681.t1 | MTR_8g028445 | 64.905 | 681 | 180 | 5 | 1 | 681 | 1 | 622 | 0.0 | 823 |
| MS.gene058681.t1 | MTR_8g028445 | 60.646 | 681 | 176 | 6 | 1 | 681 | 1 | 589 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058681.t1 | AT3G61570 | 54.611 | 694 | 271 | 8 | 1 | 683 | 1 | 661 | 0.0 | 644 |
| MS.gene058681.t1 | AT2G46180 | 53.228 | 697 | 282 | 11 | 1 | 682 | 1 | 668 | 0.0 | 643 |
| MS.gene058681.t1 | AT3G61570 | 54.185 | 681 | 268 | 8 | 1 | 670 | 1 | 648 | 0.0 | 619 |
Find 138 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTATCAAATGTTGTTTA+AGG | 0.107119 | 7.4:-26679639 | None:intergenic |
| ATTCAAATTCTCTTTCAAAT+TGG | 0.238495 | 7.4:-26673295 | None:intergenic |
| AAGGACTCTCGCCGTCGTTC+TGG | 0.293910 | 7.4:-26673380 | None:intergenic |
| CTTCTAGGAGCTAGCAGATT+TGG | 0.295608 | 7.4:+26677919 | MS.gene058681:intron |
| GGTGTTGTCCGTGGTGTTCT+TGG | 0.300342 | 7.4:+26681945 | MS.gene058681:CDS |
| CCTCTTTGCTGTGGTTTCTC+TGG | 0.302895 | 7.4:-26681240 | None:intergenic |
| GGAGCTTAAATTATTAAAGT+TGG | 0.318519 | 7.4:+26678184 | MS.gene058681:CDS |
| ATTAGACTGAATAAAGAAAA+TGG | 0.318658 | 7.4:+26675999 | MS.gene058681:CDS |
| CGCTGCATGAATCCCTATTC+TGG | 0.327087 | 7.4:-26679370 | None:intergenic |
| TTCTCTGGAAATAAGTAATA+AGG | 0.330685 | 7.4:-26681225 | None:intergenic |
| CTCCTTAAAACAGAATTTAG+AGG | 0.345799 | 7.4:+26676022 | MS.gene058681:CDS |
| GGACTTAATGGTTCGCATGC+TGG | 0.351048 | 7.4:+26681866 | MS.gene058681:CDS |
| GAAGGAAAATACCACTCTTA+AGG | 0.351348 | 7.4:+26679090 | MS.gene058681:CDS |
| CGCCTGGTCGGAGGTATCTT+AGG | 0.353705 | 7.4:+26681978 | MS.gene058681:CDS |
| AAATGTTAAGCTACAATTCC+AGG | 0.380697 | 7.4:+26678042 | MS.gene058681:CDS |
| AGAGAGTTGTCAGGAATTAC+AGG | 0.384095 | 7.4:+26682236 | MS.gene058681:CDS |
| TTAATAATTTAAGCTCCTCT+TGG | 0.389680 | 7.4:-26678178 | None:intergenic |
| GGATGATCTGCAATTCCGTT+TGG | 0.393696 | 7.4:-26673468 | None:intergenic |
| ACGGAAACTGAAGCTGGAAT+TGG | 0.398248 | 7.4:+26677997 | MS.gene058681:CDS |
| CGTGGTGTTCTTGGTTTGCC+TGG | 0.406159 | 7.4:+26681954 | MS.gene058681:CDS |
| TCTTGGTTTGCCTGGCCGCC+TGG | 0.406433 | 7.4:+26681962 | MS.gene058681:CDS |
| GCGTGGAGCCACGAGAATTC+CGG | 0.407229 | 7.4:-26673416 | None:intergenic |
| TTGCTTCTCAAGTCCAGAAT+AGG | 0.408388 | 7.4:+26679357 | MS.gene058681:CDS |
| TGCTTCTCAAGTCCAGAATA+GGG | 0.408453 | 7.4:+26679358 | MS.gene058681:CDS |
| TGATTAGATACCATCTTACT+TGG | 0.409171 | 7.4:-26677518 | None:intergenic |
| AGAAATAAAGCGTCTGCAGC+TGG | 0.411493 | 7.4:+26678994 | MS.gene058681:CDS |
| GGGATAGCAACAATTACTTA+AGG | 0.412036 | 7.4:+26679974 | MS.gene058681:CDS |
| GATGATCTGCAATTCCGTTT+GGG | 0.412498 | 7.4:-26673467 | None:intergenic |
| CTTGTCCTTTACTTGTAAGT+TGG | 0.412840 | 7.4:-26677543 | None:intergenic |
| CAACGGAACCATGTCTACTT+TGG | 0.415982 | 7.4:+26677481 | MS.gene058681:CDS |
| GACTTAATGGTTCGCATGCT+GGG | 0.418868 | 7.4:+26681867 | MS.gene058681:CDS |
| ATACATCCAACCATGCTTAC+GGG | 0.423211 | 7.4:+26683014 | MS.gene058681:CDS |
| ACAAGTCCTGCTTCTTCAAA+TGG | 0.424146 | 7.4:+26676047 | MS.gene058681:CDS |
| TACACATACCTCAGAAGAAT+AGG | 0.425699 | 7.4:-26673490 | None:intergenic |
| GGTTTGCCTGGCCGCCTGGT+CGG | 0.428565 | 7.4:+26681966 | MS.gene058681:CDS |
| CCGTAGTTCTTCAATGACTT+TGG | 0.434371 | 7.4:-26679953 | None:intergenic |
| ACTCTTCCATTTGAAGAAGC+AGG | 0.435856 | 7.4:-26676053 | None:intergenic |
| CGGCGACCTAGGAATCGAAT+TGG | 0.436425 | 7.4:-26673442 | None:intergenic |
| CATCTTACTTGGAATTGCAT+TGG | 0.441199 | 7.4:-26677507 | None:intergenic |
| CATACATCCAACCATGCTTA+CGG | 0.441543 | 7.4:+26683013 | MS.gene058681:CDS |
| TGTACTTGTGCTGCTGCTGT+GGG | 0.448239 | 7.4:-26677959 | None:intergenic |
| AGAGAAAAGAGAGAGTTGTC+AGG | 0.449048 | 7.4:+26682227 | MS.gene058681:CDS |
| CAAGTCATCAATGACTTCTC+TGG | 0.451342 | 7.4:-26680088 | None:intergenic |
| GCGAGTAGTGTGTCCTTCAT+TGG | 0.456178 | 7.4:+26679320 | MS.gene058681:CDS |
| ATCATTACTCATCTTCTGTA+AGG | 0.456920 | 7.4:-26679566 | None:intergenic |
| GGATAGCAACAATTACTTAA+GGG | 0.458701 | 7.4:+26679975 | MS.gene058681:CDS |
| TCCCTGGACCTTGTTGAGCA+AGG | 0.459143 | 7.4:-26681920 | None:intergenic |
| TTCCGTTGTTTGTAGTATAA+CGG | 0.469736 | 7.4:-26677466 | None:intergenic |
| AAAATATGGGCTCACATCAC+TGG | 0.471183 | 7.4:-26679393 | None:intergenic |
| CTTCTCAGATTGAGAAAGCT+TGG | 0.474191 | 7.4:-26680866 | None:intergenic |
| GGCCTTGCTCAACAAGGTCC+AGG | 0.475182 | 7.4:+26681918 | MS.gene058681:CDS |
| TTGTACTTGTGCTGCTGCTG+TGG | 0.476648 | 7.4:-26677960 | None:intergenic |
| TTCTGGACTTGAGAAGCAAC+AGG | 0.476669 | 7.4:-26679353 | None:intergenic |
| TTCAGTCCTTTGCAGAAATG+TGG | 0.476898 | 7.4:+26682174 | MS.gene058681:intron |
| ATACCTCCGACCAGGCGGCC+AGG | 0.482957 | 7.4:-26681972 | None:intergenic |
| GATCCTTCCAAAAGTTTCCC+TGG | 0.485553 | 7.4:+26679523 | MS.gene058681:CDS |
| TCTGCAATTCCGTTTGGGAT+CGG | 0.488973 | 7.4:-26673462 | None:intergenic |
| ACACATACCTCAGAAGAATA+GGG | 0.489219 | 7.4:-26673489 | None:intergenic |
| CGCGTTCCAATTCGATTCCT+AGG | 0.490506 | 7.4:+26673436 | MS.gene058681:CDS |
| CCTAGGTCGCCGATCCCAAA+CGG | 0.496575 | 7.4:+26673453 | MS.gene058681:CDS |
| GGAGCAAGAACGAGATAAGT+TGG | 0.498668 | 7.4:+26678018 | MS.gene058681:CDS |
| CCGTTTGGGATCGGCGACCT+AGG | 0.500548 | 7.4:-26673453 | None:intergenic |
| CCAAAGTCATTGAAGAACTA+CGG | 0.500928 | 7.4:+26679953 | MS.gene058681:CDS |
| CTATCAAATGTTGTTTAAGG+CGG | 0.509112 | 7.4:-26679636 | None:intergenic |
| ATAAATTTGCAGACTGCTCT+CGG | 0.509549 | 7.4:+26680165 | MS.gene058681:CDS |
| TATCAAATGTTGTTTAAGGC+GGG | 0.509789 | 7.4:-26679635 | None:intergenic |
| ATTCTCTTTCAAATTGGCAA+TGG | 0.511835 | 7.4:-26673289 | None:intergenic |
| ACACAAAGAATTGAATGAAA+AGG | 0.515900 | 7.4:+26678967 | MS.gene058681:CDS |
| ACTGAATCAGCTGTAAATGT+TGG | 0.516557 | 7.4:+26682011 | MS.gene058681:CDS |
| TGAAGAAGCAAGTAATGCTA+TGG | 0.516730 | 7.4:+26679036 | MS.gene058681:CDS |
| AGAAGAGCTGGCTCGTGCAA+GGG | 0.518202 | 7.4:+26680393 | MS.gene058681:CDS |
| GTCCTTCCGTCTCCGATCGC+CGG | 0.519310 | 7.4:+26673397 | MS.gene058681:CDS |
| TAAACAACATTTGATAGAGA+AGG | 0.520555 | 7.4:+26679642 | MS.gene058681:CDS |
| GCCACGAGAATTCCGGCGAT+CGG | 0.529254 | 7.4:-26673409 | None:intergenic |
| TTGCCTGGCCGCCTGGTCGG+AGG | 0.530058 | 7.4:+26681969 | MS.gene058681:CDS |
| CAATGCAATTCCAAGTAAGA+TGG | 0.530243 | 7.4:+26677508 | MS.gene058681:CDS |
| TCATTCCAACTTACAAGTAA+AGG | 0.531419 | 7.4:+26677538 | MS.gene058681:CDS |
| TGATTTGAAGAAAACACAAC+AGG | 0.531460 | 7.4:+26679585 | MS.gene058681:CDS |
| AGAATTCCGGCGATCGGAGA+CGG | 0.533609 | 7.4:-26673403 | None:intergenic |
| CAAAGTCATTGAAGAACTAC+GGG | 0.541720 | 7.4:+26679954 | MS.gene058681:CDS |
| CTGAGAAGGTACAATCAGAA+TGG | 0.544112 | 7.4:+26680881 | MS.gene058681:CDS |
| TCAGTCCTTTGCAGAAATGT+GGG | 0.545511 | 7.4:+26682175 | MS.gene058681:intron |
| TATGTTGTCGATTAGATGAC+TGG | 0.545870 | 7.4:-26677421 | None:intergenic |
| CCACGGACAACACCTTTCCC+TGG | 0.548866 | 7.4:-26681936 | None:intergenic |
| AAGAAGAGCTGGCTCGTGCA+AGG | 0.551363 | 7.4:+26680392 | MS.gene058681:CDS |
| TGACATACGGAAACTGAAGC+TGG | 0.552700 | 7.4:+26677991 | MS.gene058681:CDS |
| CTCCTAAGATACCTCCGACC+AGG | 0.555589 | 7.4:-26681980 | None:intergenic |
| GGAACATTTAGAAGAAGAGC+TGG | 0.561806 | 7.4:+26680381 | MS.gene058681:intron |
| ACCACTCAATATATCCACTC+TGG | 0.563157 | 7.4:-26680824 | None:intergenic |
| TCCGATCGCCGGAATTCTCG+TGG | 0.565724 | 7.4:+26673408 | MS.gene058681:CDS |
| AGCATGGTTGGATGTATGAT+CGG | 0.569726 | 7.4:-26683008 | None:intergenic |
| GCTCAACAAGGTCCAGGGAA+AGG | 0.570469 | 7.4:+26681924 | MS.gene058681:CDS |
| CTGCTTGAAGACTACAACTG+AGG | 0.579535 | 7.4:+26678934 | MS.gene058681:intron |
| GAGCTAGCAGATTTGGCAGA+AGG | 0.579544 | 7.4:+26677926 | MS.gene058681:CDS |
| TACAACATACTCATGACATA+CGG | 0.579790 | 7.4:+26677978 | MS.gene058681:CDS |
| TTATGCTGAGATCGAAGCTA+AGG | 0.581060 | 7.4:+26680194 | MS.gene058681:CDS |
| GAAGAAAACACAACAGGAGA+GGG | 0.582022 | 7.4:+26679591 | MS.gene058681:CDS |
| AATGAGGACAAGCAAAGGAT+AGG | 0.583950 | 7.4:+26681897 | MS.gene058681:CDS |
| CAAGCTTTCTCAATCTGAGA+AGG | 0.584135 | 7.4:+26680867 | MS.gene058681:CDS |
| ACTAATCGAAACATTAGAGA+AGG | 0.585525 | 7.4:+26679072 | MS.gene058681:CDS |
| GACTTGATACCTCTTTGCTG+TGG | 0.590615 | 7.4:-26681249 | None:intergenic |
| CTGGAGTTGACTAGACAGAA+AGG | 0.592126 | 7.4:+26679013 | MS.gene058681:CDS |
| ATCAACCCACATTTCTGCAA+AGG | 0.595206 | 7.4:-26682180 | None:intergenic |
| AACCGTTATACTACAAACAA+CGG | 0.596164 | 7.4:+26677464 | MS.gene058681:CDS |
| GCCTTGCTCAACAAGGTCCA+GGG | 0.599894 | 7.4:+26681919 | MS.gene058681:CDS |
| CTGGTCGGAGGTATCTTAGG+AGG | 0.603616 | 7.4:+26681981 | MS.gene058681:CDS |
| TACATCCAACCATGCTTACG+GGG | 0.606049 | 7.4:+26683015 | MS.gene058681:CDS |
| TTTGAATCAGATCGCTCTCG+AGG | 0.606115 | 7.4:+26673311 | MS.gene058681:CDS |
| ATTGGATTCCAAAGTAGACA+TGG | 0.607533 | 7.4:-26677489 | None:intergenic |
| TTTCCCTGGAAAAGAAGACA+TGG | 0.608475 | 7.4:+26679537 | MS.gene058681:CDS |
| TTCCGGCGATCGGAGACGGA+AGG | 0.610247 | 7.4:-26673399 | None:intergenic |
| AATGTTAAGCTACAATTCCA+GGG | 0.610520 | 7.4:+26678043 | MS.gene058681:CDS |
| TTCTTCAAATGGAAGAGTCA+AGG | 0.610972 | 7.4:+26676058 | MS.gene058681:CDS |
| AAATGTTGGATCTGATAACC+AGG | 0.611004 | 7.4:+26682025 | MS.gene058681:CDS |
| TGAAGAAAACACAACAGGAG+AGG | 0.612395 | 7.4:+26679590 | MS.gene058681:CDS |
| AAGTAGAGTAAGCAAGCTTG+AGG | 0.612664 | 7.4:+26680906 | MS.gene058681:CDS |
| AGGAATCGAATTGGAACGCG+TGG | 0.612733 | 7.4:-26673433 | None:intergenic |
| TTTCTAATGAGGACAAGCAA+AGG | 0.613705 | 7.4:+26681892 | MS.gene058681:CDS |
| AGATCATCCCTATTCTTCTG+AGG | 0.615527 | 7.4:+26673482 | MS.gene058681:CDS |
| CCAGGGAAAGGTGTTGTCCG+TGG | 0.616212 | 7.4:+26681936 | MS.gene058681:CDS |
| CCAGAGAAACCACAGCAAAG+AGG | 0.616290 | 7.4:+26681240 | MS.gene058681:CDS |
| GACACGGTTAAATAGAATGT+CGG | 0.626059 | 7.4:+26680969 | MS.gene058681:CDS |
| ATTGAACAAGTCTTTCCAAG+AGG | 0.629789 | 7.4:+26678163 | MS.gene058681:CDS |
| AGTCATCTAATCGACAACAT+AGG | 0.634034 | 7.4:+26677423 | MS.gene058681:CDS |
| AGGATAGGCCTTGCTCAACA+AGG | 0.637494 | 7.4:+26681912 | MS.gene058681:CDS |
| ACGGTTAAATAGAATGTCGG+TGG | 0.643154 | 7.4:+26680972 | MS.gene058681:CDS |
| TCCAGAGTGGATATATTGAG+TGG | 0.653227 | 7.4:+26680823 | MS.gene058681:CDS |
| AGGAAGAAAATGCTAAATTG+CGG | 0.656368 | 7.4:+26680926 | MS.gene058681:CDS |
| GTACTTGTGCTGCTGCTGTG+GGG | 0.658773 | 7.4:-26677958 | None:intergenic |
| ATATCTACAAACCTTAAGAG+TGG | 0.660294 | 7.4:-26679101 | None:intergenic |
| CAACTTACAAGTAAAGGACA+AGG | 0.664677 | 7.4:+26677544 | MS.gene058681:CDS |
| CAGGCAAACCAAGAACACCA+CGG | 0.665329 | 7.4:-26681953 | None:intergenic |
| CTCTTGAACAGAGTATGACA+CGG | 0.666943 | 7.4:+26680953 | MS.gene058681:CDS |
| ACATCCAACCATGCTTACGG+GGG | 0.699459 | 7.4:+26683016 | MS.gene058681:CDS |
| CTAAGATACCTCCGACCAGG+CGG | 0.703997 | 7.4:-26681977 | None:intergenic |
| TGAAGACTACAACTGAGGTG+AGG | 0.704587 | 7.4:+26678939 | MS.gene058681:intron |
| TCTTACGCAATCCAGAACGA+CGG | 0.718258 | 7.4:+26673369 | MS.gene058681:CDS |
| CCAGGATGCAGATTCCAGAG+TGG | 0.718779 | 7.4:+26680810 | MS.gene058681:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 26673279 | 26683043 | 26673279 | ID=MS.gene058681 |
| chr7.4 | mRNA | 26673279 | 26683043 | 26673279 | ID=MS.gene058681.t1;Parent=MS.gene058681 |
| chr7.4 | exon | 26673279 | 26673503 | 26673279 | ID=MS.gene058681.t1.exon1;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26673279 | 26673503 | 26673279 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26674808 | 26674906 | 26674808 | ID=MS.gene058681.t1.exon2;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26674808 | 26674906 | 26674808 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26675990 | 26676079 | 26675990 | ID=MS.gene058681.t1.exon3;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26675990 | 26676079 | 26675990 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26677410 | 26677565 | 26677410 | ID=MS.gene058681.t1.exon4;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26677410 | 26677565 | 26677410 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26677926 | 26678064 | 26677926 | ID=MS.gene058681.t1.exon5;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26677926 | 26678064 | 26677926 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26678153 | 26678217 | 26678153 | ID=MS.gene058681.t1.exon6;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26678153 | 26678217 | 26678153 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26678944 | 26679111 | 26678944 | ID=MS.gene058681.t1.exon7;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26678944 | 26679111 | 26678944 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26679287 | 26679400 | 26679287 | ID=MS.gene058681.t1.exon8;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26679287 | 26679400 | 26679287 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26679517 | 26679663 | 26679517 | ID=MS.gene058681.t1.exon9;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26679517 | 26679663 | 26679517 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26679919 | 26680215 | 26679919 | ID=MS.gene058681.t1.exon10;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26679919 | 26680215 | 26679919 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26680382 | 26680447 | 26680382 | ID=MS.gene058681.t1.exon11;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26680382 | 26680447 | 26680382 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26680814 | 26681016 | 26680814 | ID=MS.gene058681.t1.exon12;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26680814 | 26681016 | 26680814 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26681207 | 26681261 | 26681207 | ID=MS.gene058681.t1.exon13;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26681207 | 26681261 | 26681207 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26681861 | 26682046 | 26681861 | ID=MS.gene058681.t1.exon14;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26681861 | 26682046 | 26681861 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26682179 | 26682257 | 26682179 | ID=MS.gene058681.t1.exon15;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26682179 | 26682257 | 26682179 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| chr7.4 | exon | 26683000 | 26683043 | 26683000 | ID=MS.gene058681.t1.exon16;Parent=MS.gene058681.t1 |
| chr7.4 | CDS | 26683000 | 26683043 | 26683000 | ID=cds.MS.gene058681.t1;Parent=MS.gene058681.t1 |
| Gene Sequence |
| Protein sequence |
