Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53600.t1 | XP_013467149.1 | 94.2 | 754 | 42 | 2 | 1 | 752 | 1 | 754 | 0.00E+00 | 1122.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53600.t1 | Q9LIQ9 | 25.1 | 765 | 497 | 19 | 1 | 752 | 1 | 702 | 6.0e-21 | 104.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53600.t1 | A0A072VST2 | 94.2 | 754 | 42 | 2 | 1 | 752 | 1 | 754 | 0.0e+00 | 1122.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene53600 | 0.842122 | 3.14E-58 | -1.69E-46 |
| MS.gene049368 | MS.gene53600 | 0.827285 | 1.70E-54 | -1.69E-46 |
| MS.gene049685 | MS.gene53600 | 0.802764 | 4.81E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene53600 | 0.803071 | 4.15E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene53600 | 0.817707 | 2.87E-52 | -1.69E-46 |
| MS.gene050213 | MS.gene53600 | 0.819064 | 1.41E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene53600 | 0.80016 | 1.64E-48 | -1.69E-46 |
| MS.gene050551 | MS.gene53600 | 0.861936 | 7.23E-64 | -1.69E-46 |
| MS.gene050556 | MS.gene53600 | 0.821277 | 4.40E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene53600 | 0.822215 | 2.67E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene53600 | 0.820165 | 7.92E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene53600 | 0.807057 | 6.09E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene53600 | 0.852213 | 5.35E-61 | -1.69E-46 |
| MS.gene050931 | MS.gene53600 | 0.820527 | 6.54E-53 | -1.69E-46 |
| MS.gene051029 | MS.gene53600 | 0.809687 | 1.67E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene53600 | 0.808811 | 2.58E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene53600 | 0.820765 | 5.77E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene53600 | 0.815248 | 1.02E-51 | -1.69E-46 |
| MS.gene051381 | MS.gene53600 | 0.861783 | 8.05E-64 | -1.69E-46 |
| MS.gene051382 | MS.gene53600 | 0.820962 | 5.20E-53 | -1.69E-46 |
| MS.gene051642 | MS.gene53600 | 0.800586 | 1.34E-48 | -1.69E-46 |
| MS.gene051676 | MS.gene53600 | 0.832689 | 8.19E-56 | -1.69E-46 |
| MS.gene051902 | MS.gene53600 | 0.82902 | 6.50E-55 | -1.69E-46 |
| MS.gene051975 | MS.gene53600 | 0.800005 | 1.77E-48 | -1.69E-46 |
| MS.gene052072 | MS.gene53600 | 0.82988 | 4.02E-55 | -1.69E-46 |
| MS.gene052242 | MS.gene53600 | -0.80087 | 1.18E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene53600 | 0.856244 | 3.67E-62 | -1.69E-46 |
| MS.gene052434 | MS.gene53600 | 0.817443 | 3.29E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene53600 | 0.882328 | 1.14E-70 | -1.69E-46 |
| MS.gene052775 | MS.gene53600 | 0.802013 | 6.86E-49 | -1.69E-46 |
| MS.gene052776 | MS.gene53600 | 0.835121 | 2.02E-56 | -1.69E-46 |
| MS.gene052932 | MS.gene53600 | 0.842016 | 3.34E-58 | -1.69E-46 |
| MS.gene053079 | MS.gene53600 | 0.85129 | 9.77E-61 | -1.69E-46 |
| MS.gene053143 | MS.gene53600 | 0.843201 | 1.62E-58 | -1.69E-46 |
| MS.gene053167 | MS.gene53600 | 0.813607 | 2.35E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene53600 | 0.810081 | 1.38E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene53600 | 0.830423 | 2.96E-55 | -1.69E-46 |
| MS.gene055311 | MS.gene53600 | 0.83158 | 1.54E-55 | -1.69E-46 |
| MS.gene055313 | MS.gene53600 | 0.835465 | 1.65E-56 | -1.69E-46 |
| MS.gene055314 | MS.gene53600 | 0.838778 | 2.35E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene53600 | 0.844459 | 7.46E-59 | -1.69E-46 |
| MS.gene055513 | MS.gene53600 | 0.861273 | 1.15E-63 | -1.69E-46 |
| MS.gene056045 | MS.gene53600 | 0.846771 | 1.76E-59 | -1.69E-46 |
| MS.gene056097 | MS.gene53600 | 0.81521 | 1.04E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene53600 | 0.877569 | 5.66E-69 | -1.69E-46 |
| MS.gene056308 | MS.gene53600 | 0.832391 | 9.71E-56 | -1.69E-46 |
| MS.gene056390 | MS.gene53600 | 0.818889 | 1.55E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene53600 | 0.824185 | 9.26E-54 | -1.69E-46 |
| MS.gene056578 | MS.gene53600 | 0.84687 | 1.65E-59 | -1.69E-46 |
| MS.gene058054 | MS.gene53600 | 0.804282 | 2.33E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene53600 | 0.818367 | 2.03E-52 | -1.69E-46 |
| MS.gene058638 | MS.gene53600 | 0.8666 | 2.53E-65 | -1.69E-46 |
| MS.gene058639 | MS.gene53600 | 0.868846 | 4.82E-66 | -1.69E-46 |
| MS.gene058681 | MS.gene53600 | 0.814156 | 1.78E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene53600 | 0.819156 | 1.35E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene53600 | 0.803071 | 4.15E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene53600 | 0.865034 | 7.91E-65 | -1.69E-46 |
| MS.gene059725 | MS.gene53600 | 0.823995 | 1.03E-53 | -1.69E-46 |
| MS.gene059778 | MS.gene53600 | 0.836029 | 1.19E-56 | -1.69E-46 |
| MS.gene059965 | MS.gene53600 | 0.801112 | 1.05E-48 | -1.69E-46 |
| MS.gene060343 | MS.gene53600 | -0.818439 | 1.96E-52 | -1.69E-46 |
| MS.gene060563 | MS.gene53600 | 0.804459 | 2.14E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene53600 | 0.84771 | 9.73E-60 | -1.69E-46 |
| MS.gene060937 | MS.gene53600 | 0.805136 | 1.54E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene53600 | 0.85239 | 4.76E-61 | -1.69E-46 |
| MS.gene061100 | MS.gene53600 | 0.842676 | 2.24E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53600.t1 | MTR_1g046350 | 94.570 | 755 | 39 | 2 | 1 | 753 | 1 | 755 | 0.0 | 1414 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53600.t1 | AT3G23980 | 52.034 | 467 | 212 | 5 | 295 | 753 | 241 | 703 | 3.25e-144 | 441 |
Find 144 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACATGGTTCGGTTTC+TGG | 0.073450 | 1.4:-30982362 | MS.gene53600:CDS |
| GCACAGGCTGTTTCTGATTT+TGG | 0.108677 | 1.4:+30982966 | None:intergenic |
| ACTACTCAAAACATGGTTAA+TGG | 0.192030 | 1.4:-30973667 | MS.gene53600:CDS |
| GGGTCTGGACCTCAAGTTTC+CGG | 0.192845 | 1.4:+30973707 | None:intergenic |
| AAATGTTGCTAGACCTTCTA+TGG | 0.202624 | 1.4:-30982025 | MS.gene53600:CDS |
| GAAACTTCACATTCATCTTT+TGG | 0.222139 | 1.4:-30975438 | MS.gene53600:CDS |
| AAAGATGAATGTGAAGTTTC+AGG | 0.222520 | 1.4:+30975441 | None:intergenic |
| TAACCAATGGAATCATATTT+AGG | 0.224019 | 1.4:+30982141 | None:intergenic |
| TCTACATCTACCGAGGATTT+AGG | 0.246320 | 1.4:-30976079 | MS.gene53600:intron |
| TAGTGTCTTCAGGTGGCTTA+TGG | 0.274534 | 1.4:+30981914 | None:intergenic |
| TCCGTTGATGTTGAATTTAT+TGG | 0.276314 | 1.4:+30982090 | None:intergenic |
| ACAGAATTGTTACTCTTGTT+TGG | 0.277700 | 1.4:+30982506 | None:intergenic |
| TGATGAGCGTGCCAAGTTAT+TGG | 0.288852 | 1.4:-30979812 | MS.gene53600:CDS |
| GGTTAAACAAATTCACATTC+TGG | 0.291107 | 1.4:+30982855 | None:intergenic |
| AATAAAACAAATGATATATA+TGG | 0.294067 | 1.4:-30982665 | MS.gene53600:CDS |
| CTTTGCCTTGGTTGGCATAC+TGG | 0.297755 | 1.4:+30973103 | None:intergenic |
| TCTTGCTCAGGTTGATAAAA+TGG | 0.308431 | 1.4:+30981997 | None:intergenic |
| TAGTCAAAAGCTCTAATCTT+TGG | 0.309700 | 1.4:+30973686 | None:intergenic |
| GCCAGAGGATGCAGTCTTCT+TGG | 0.312652 | 1.4:+30983012 | None:intergenic |
| ACTAGTCAGTCCAGCCTTCA+TGG | 0.315047 | 1.4:-30982545 | MS.gene53600:CDS |
| CGCTGGTTCTTTGCCTTGGT+TGG | 0.335802 | 1.4:+30973095 | None:intergenic |
| AAAGAAGATGTTGCTGTCTA+AGG | 0.339145 | 1.4:-30976158 | MS.gene53600:CDS |
| ATGATAAGTGCTAAGGAAAA+TGG | 0.341352 | 1.4:-30981826 | MS.gene53600:CDS |
| TGACCCGTTACTCATGGATC+TGG | 0.350602 | 1.4:+30973063 | None:intergenic |
| TTCTAAATGACTAAACTTAG+AGG | 0.351811 | 1.4:+30981972 | None:intergenic |
| GTTCGAGTTAATGAGTTAGA+TGG | 0.361536 | 1.4:-30982932 | MS.gene53600:CDS |
| GACTGAAAATTATAATCATC+AGG | 0.365639 | 1.4:-30980579 | MS.gene53600:intron |
| TTCTCAAATGGCGTCGGCTC+AGG | 0.367856 | 1.4:-30984677 | None:intergenic |
| GGTCTGGACCTCAAGTTTCC+GGG | 0.375907 | 1.4:+30973708 | None:intergenic |
| TCTAAGGTACGAAAGGCTTC+AGG | 0.388140 | 1.4:-30976142 | MS.gene53600:CDS |
| ATTTATTGGTGAATGGTTAG+AGG | 0.390404 | 1.4:+30982104 | None:intergenic |
| CGAAAATGTATAAAGCTATT+GGG | 0.393453 | 1.4:-30973146 | MS.gene53600:intron |
| TAGTGGCTCTTCACATGGTT+CGG | 0.395243 | 1.4:-30982369 | MS.gene53600:CDS |
| AACTTAGAGGCATCTTGCTC+AGG | 0.396828 | 1.4:+30981985 | None:intergenic |
| AGTGATTTGCCTAGTCTTCA+TGG | 0.398609 | 1.4:-30982174 | MS.gene53600:CDS |
| AGTCTTCTTGGCCCGCTCTT+CGG | 0.399061 | 1.4:+30983024 | None:intergenic |
| CAAATCACTATCAGATCTAA+TGG | 0.399113 | 1.4:+30982188 | None:intergenic |
| AAGACCCTTGATTACTACTT+TGG | 0.399332 | 1.4:+30982834 | None:intergenic |
| TTTAACCAAAGTAGTAATCA+AGG | 0.399880 | 1.4:-30982839 | MS.gene53600:CDS |
| GTACGAAAGGCTTCAGGATT+CGG | 0.402189 | 1.4:-30976136 | MS.gene53600:CDS |
| AATTGTTACTCTTGTTTGGC+TGG | 0.402249 | 1.4:+30982510 | None:intergenic |
| ATCCGAAGTCATTGGCTTAG+AGG | 0.414659 | 1.4:-30979788 | MS.gene53600:CDS |
| AATTCTAGCACTTTGGATAG+TGG | 0.418051 | 1.4:-30982386 | MS.gene53600:CDS |
| AGTCAAAAGCTCTAATCTTT+GGG | 0.418246 | 1.4:+30973687 | None:intergenic |
| GCCAAGAAGACTGCATCCTC+TGG | 0.420613 | 1.4:-30983013 | MS.gene53600:CDS |
| CAATCAATTGAAATCAGAAA+TGG | 0.420675 | 1.4:-30980203 | MS.gene53600:CDS |
| AAGCAGAAATTTCTTCATAC+AGG | 0.424586 | 1.4:-30978485 | MS.gene53600:intron |
| TGGATTATGAAGCTATTTCC+TGG | 0.428453 | 1.4:-30973238 | MS.gene53600:intron |
| TCCATTCATTCCATGAAGGC+TGG | 0.430594 | 1.4:+30982535 | None:intergenic |
| ATGTGAAGTTTCAGGAACTA+TGG | 0.430689 | 1.4:+30975449 | None:intergenic |
| AATGCGCTGGTTCTTTGCCT+TGG | 0.438881 | 1.4:+30973091 | None:intergenic |
| ACCTTCTTGAAGAGCATCAA+TGG | 0.439176 | 1.4:+30977592 | None:intergenic |
| AGAAGAATTGATGAAATCCT+TGG | 0.447637 | 1.4:-30975104 | MS.gene53600:CDS |
| TCATACGTAACACGAGAATC+TGG | 0.451777 | 1.4:+30973616 | None:intergenic |
| TCAAGAAGCAATGACACATC+AGG | 0.455574 | 1.4:-30981949 | MS.gene53600:CDS |
| GCCGACAAATTCTAGCACTT+TGG | 0.465447 | 1.4:-30982393 | MS.gene53600:CDS |
| TCCAAAGTGCTAGAATTTGT+CGG | 0.465999 | 1.4:+30982392 | None:intergenic |
| AAGCAAGAGCATCTCGAAGC+TGG | 0.470034 | 1.4:-30984649 | MS.gene53600:CDS |
| TCCAGCCTTCATGGAATGAA+TGG | 0.470214 | 1.4:-30982536 | MS.gene53600:CDS |
| TAGGTGGTGGAAAGAGTGTT+GGG | 0.470807 | 1.4:-30973262 | MS.gene53600:CDS |
| ATTGTCATTGATTTCTGTGT+TGG | 0.472642 | 1.4:+30975506 | None:intergenic |
| ATGTTGAATTTATTGGTGAA+TGG | 0.472862 | 1.4:+30982097 | None:intergenic |
| AAAGCTCTAATCTTTGGGTC+TGG | 0.476751 | 1.4:+30973692 | None:intergenic |
| TTTAGAGAATCAAGAAAAGA+TGG | 0.488430 | 1.4:+30982045 | None:intergenic |
| TCTGTGTTGGAGTTTGAAGC+AGG | 0.494362 | 1.4:+30975519 | None:intergenic |
| TTCACATCAACAGGTTGAGC+TGG | 0.494499 | 1.4:-30979884 | MS.gene53600:intron |
| ATCTGAGAGTTCAAGAATGA+AGG | 0.500940 | 1.4:-30975071 | MS.gene53600:intron |
| TTATTGGCATCCGAAGTCAT+TGG | 0.502045 | 1.4:-30979796 | MS.gene53600:CDS |
| GGCTTCCATTCATTCCATGA+AGG | 0.505970 | 1.4:+30982531 | None:intergenic |
| GGCGGAGCTGTTACTGACAC+TGG | 0.507273 | 1.4:-30982887 | MS.gene53600:CDS |
| GACTTCGGATGCCAATAACT+TGG | 0.509815 | 1.4:+30979801 | None:intergenic |
| TAAAATGGAGACCCCATAGA+AGG | 0.511011 | 1.4:+30982012 | None:intergenic |
| GCAAGAGATCAAAGCACAAC+TGG | 0.511320 | 1.4:-30980170 | MS.gene53600:intron |
| TGGTGGTTTGTTGTTCCATA+CGG | 0.515033 | 1.4:+30982614 | None:intergenic |
| TTGGATAGTGGCTCTTCACA+TGG | 0.515846 | 1.4:-30982374 | MS.gene53600:CDS |
| AGCGTAGAAAAGTACTTTGG+TGG | 0.517565 | 1.4:+30982597 | None:intergenic |
| ACCAATAAATTCAACATCAA+CGG | 0.524156 | 1.4:-30982091 | MS.gene53600:CDS |
| ACCATTGATGCTCTTCAAGA+AGG | 0.525225 | 1.4:-30977593 | MS.gene53600:intron |
| TTAGGTGGTGGAAAGAGTGT+TGG | 0.530644 | 1.4:-30973263 | MS.gene53600:intron |
| TCTCGAAGCTGGAAAACGTC+GGG | 0.531286 | 1.4:-30984638 | MS.gene53600:intron |
| AGTAATCAAGGGTCTTTAGC+TGG | 0.532144 | 1.4:-30982827 | MS.gene53600:CDS |
| TTCTTTGCAACGCGCTCTTG+AGG | 0.534950 | 1.4:-30980648 | MS.gene53600:CDS |
| ATACCTAAATATGATTCCAT+TGG | 0.536353 | 1.4:-30982144 | MS.gene53600:CDS |
| AATGTTGCTAGACCTTCTAT+GGG | 0.541386 | 1.4:-30982024 | MS.gene53600:CDS |
| TAATACATCTACCACTAGTC+CGG | 0.541808 | 1.4:-30982777 | MS.gene53600:CDS |
| CTCCTCTAAGCCAATGACTT+CGG | 0.545944 | 1.4:+30979786 | None:intergenic |
| CGTTACTCATGGATCTGGGT+TGG | 0.546050 | 1.4:+30973068 | None:intergenic |
| ACCACATCTGATGGCATTGG+CGG | 0.547565 | 1.4:-30982905 | MS.gene53600:CDS |
| CTCAGATGATTCAAATGCCA+AGG | 0.548162 | 1.4:+30975087 | None:intergenic |
| GAGAGCGTAGAAAAGTACTT+TGG | 0.551446 | 1.4:+30982594 | None:intergenic |
| TGGTGGAAAGAGTGTTGGGA+TGG | 0.554103 | 1.4:-30973258 | MS.gene53600:CDS |
| GACCCGTTACTCATGGATCT+GGG | 0.556398 | 1.4:+30973064 | None:intergenic |
| AGTCATTGGCTTAGAGGAGA+AGG | 0.557070 | 1.4:-30979782 | MS.gene53600:intron |
| GGATCTGGGTTGGAATGCGC+TGG | 0.557377 | 1.4:+30973078 | None:intergenic |
| ATTCCTCACTTCATAACCAA+TGG | 0.557880 | 1.4:+30982128 | None:intergenic |
| CATTAATGCACTTATTTCTG+AGG | 0.561666 | 1.4:-30975367 | MS.gene53600:intron |
| ACCTGAAGACACTAAAACTG+TGG | 0.561839 | 1.4:-30981905 | MS.gene53600:CDS |
| ATTCACACCGGTGGTGTTGG+TGG | 0.562626 | 1.4:-30982641 | MS.gene53600:CDS |
| AGATAAACAAGGAGTTGTCC+CGG | 0.563321 | 1.4:-30973726 | MS.gene53600:CDS |
| GTTAAAGCTTGAGAAGCAGC+TGG | 0.563480 | 1.4:-30978517 | MS.gene53600:CDS |
| GAACATTCAGATATTGATGA+AGG | 0.564471 | 1.4:-30982749 | MS.gene53600:CDS |
| GAACATTCCGTATGCAGATG+AGG | 0.566725 | 1.4:-30973593 | MS.gene53600:CDS |
| ATCACTCTCATCTGATCATG+AGG | 0.567360 | 1.4:+30975396 | None:intergenic |
| ATCTACCACTAGTCCGGTGG+AGG | 0.567627 | 1.4:-30982771 | MS.gene53600:CDS |
| ATATCTGAATGTTCCTCCAC+CGG | 0.568990 | 1.4:+30982758 | None:intergenic |
| AATGTATAAAGCTATTGGGA+TGG | 0.572003 | 1.4:-30973142 | MS.gene53600:intron |
| CGGAAATCCACCAACACCAC+CGG | 0.572990 | 1.4:+30982634 | None:intergenic |
| GTTACCACATCTGATGGCAT+TGG | 0.573153 | 1.4:-30982908 | MS.gene53600:CDS |
| TCATCACCCTCATCTGCATA+CGG | 0.574776 | 1.4:+30973586 | None:intergenic |
| GGAATTCACACCGGTGGTGT+TGG | 0.576102 | 1.4:-30982644 | MS.gene53600:CDS |
| AGGAAACAAACCTAAATCCT+CGG | 0.580331 | 1.4:+30976069 | None:intergenic |
| TGATCATGAGGAATATTCAC+AGG | 0.581107 | 1.4:+30975408 | None:intergenic |
| ATCTCGAAGCTGGAAAACGT+CGG | 0.581971 | 1.4:-30984639 | MS.gene53600:CDS |
| GATGGAGTTACCACATCTGA+TGG | 0.584090 | 1.4:-30982914 | MS.gene53600:CDS |
| AAGTGCTAAGGAAAATGGCA+TGG | 0.585974 | 1.4:-30981821 | MS.gene53600:CDS |
| AATAAAACAAGTAAAAGAGA+TGG | 0.586995 | 1.4:-30976103 | MS.gene53600:CDS |
| CAATGGTTGACTGCAAATCA+CGG | 0.587621 | 1.4:+30977609 | None:intergenic |
| CAAGAGTAACAATTCTGTGA+AGG | 0.588955 | 1.4:-30982501 | MS.gene53600:CDS |
| ATTCCATTGGTTATGAAGTG+AGG | 0.589979 | 1.4:-30982131 | MS.gene53600:CDS |
| TCACATGGTTCGGTTTCTGG+AGG | 0.590717 | 1.4:-30982359 | MS.gene53600:intron |
| GGTGTTGGTGGATTTCCGTA+TGG | 0.595213 | 1.4:-30982629 | MS.gene53600:CDS |
| ATGTTCCTCCACCGGACTAG+TGG | 0.595690 | 1.4:+30982766 | None:intergenic |
| GTTGCTGTCTAAGGTACGAA+AGG | 0.597821 | 1.4:-30976149 | MS.gene53600:CDS |
| TTAACCAAAGTAGTAATCAA+GGG | 0.598551 | 1.4:-30982838 | MS.gene53600:CDS |
| AACATTCCGTATGCAGATGA+GGG | 0.604691 | 1.4:-30973592 | MS.gene53600:CDS |
| AAATGGCGTCGGCTCAGGTG+AGG | 0.606141 | 1.4:-30984672 | MS.gene53600:CDS |
| ACATCAACAGGTTGAGCTGG+AGG | 0.609822 | 1.4:-30979881 | MS.gene53600:intron |
| GCGGAGCTGTTACTGACACT+GGG | 0.619830 | 1.4:-30982886 | MS.gene53600:CDS |
| ATAGTTGCACCATGAAGACT+AGG | 0.621060 | 1.4:+30982165 | None:intergenic |
| TACATCTACCACTAGTCCGG+TGG | 0.624763 | 1.4:-30982774 | MS.gene53600:CDS |
| TCCGCCAATGCCATCAGATG+TGG | 0.629114 | 1.4:+30982904 | None:intergenic |
| ATTATTGAAGGAGATAAACA+AGG | 0.637691 | 1.4:-30973737 | MS.gene53600:intron |
| AGAATTCTGAACAGTGCCAG+AGG | 0.639352 | 1.4:+30982997 | None:intergenic |
| AAGGATTATGCAGTTACTGA+TGG | 0.642365 | 1.4:-30982482 | MS.gene53600:CDS |
| GATATATATGGAATTCACAC+CGG | 0.642496 | 1.4:-30982653 | MS.gene53600:CDS |
| CCTGAAGACACTAAAACTGT+GGG | 0.644563 | 1.4:-30981904 | MS.gene53600:CDS |
| CACACCGATGATAAGTGCTA+AGG | 0.647322 | 1.4:-30981833 | MS.gene53600:CDS |
| CAAGAAGCAATGACACATCA+GGG | 0.652344 | 1.4:-30981948 | MS.gene53600:CDS |
| GTATGCAGATGAGGGTGATG+AGG | 0.658889 | 1.4:-30973584 | MS.gene53600:intron |
| GGAGTTGTCCCGGAAACTTG+AGG | 0.672278 | 1.4:-30973716 | MS.gene53600:CDS |
| ATATATGGAATTCACACCGG+TGG | 0.680753 | 1.4:-30982650 | MS.gene53600:CDS |
| AGATGGCTCTACATCTACCG+AGG | 0.698883 | 1.4:-30976086 | MS.gene53600:CDS |
| ATGTTGCTAGACCTTCTATG+GGG | 0.757039 | 1.4:-30982023 | MS.gene53600:CDS |
| TGGTTGACTGCAAATCACGG+CGG | 0.815806 | 1.4:+30977612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 30973074 | 30984692 | 30973074 | ID=MS.gene53600 |
| chr1.4 | mRNA | 30973074 | 30984692 | 30973074 | ID=MS.gene53600.t1;Parent=MS.gene53600 |
| chr1.4 | exon | 30984639 | 30984692 | 30984639 | ID=MS.gene53600.t1.exon1;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30984639 | 30984692 | 30984639 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30982360 | 30983071 | 30982360 | ID=MS.gene53600.t1.exon2;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30982360 | 30983071 | 30982360 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30981762 | 30982246 | 30981762 | ID=MS.gene53600.t1.exon3;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30981762 | 30982246 | 30981762 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30980580 | 30980699 | 30980580 | ID=MS.gene53600.t1.exon4;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30980580 | 30980699 | 30980580 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30980171 | 30980236 | 30980171 | ID=MS.gene53600.t1.exon5;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30980171 | 30980236 | 30980171 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30979783 | 30979893 | 30979783 | ID=MS.gene53600.t1.exon6;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30979783 | 30979893 | 30979783 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30978486 | 30978562 | 30978486 | ID=MS.gene53600.t1.exon7;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30978486 | 30978562 | 30978486 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30977594 | 30977661 | 30977594 | ID=MS.gene53600.t1.exon8;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30977594 | 30977661 | 30977594 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30976080 | 30976181 | 30976080 | ID=MS.gene53600.t1.exon9;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30976080 | 30976181 | 30976080 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30975368 | 30975552 | 30975368 | ID=MS.gene53600.t1.exon10;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30975368 | 30975552 | 30975368 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30975072 | 30975140 | 30975072 | ID=MS.gene53600.t1.exon11;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30975072 | 30975140 | 30975072 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30973585 | 30973749 | 30973585 | ID=MS.gene53600.t1.exon12;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30973585 | 30973749 | 30973585 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30973239 | 30973281 | 30973239 | ID=MS.gene53600.t1.exon13;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30973239 | 30973281 | 30973239 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| chr1.4 | exon | 30973074 | 30973153 | 30973074 | ID=MS.gene53600.t1.exon14;Parent=MS.gene53600.t1 |
| chr1.4 | CDS | 30973074 | 30973153 | 30973074 | ID=cds.MS.gene53600.t1;Parent=MS.gene53600.t1 |
| Gene Sequence |
| Protein sequence |
