Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59366.t1 | XP_024639644.1 | 98.4 | 980 | 16 | 0 | 1 | 980 | 1 | 980 | 0.00E+00 | 1877.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59366.t1 | Q8L5Y0 | 69.6 | 1001 | 282 | 11 | 1 | 980 | 1 | 1000 | 0.0e+00 | 1329.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59366.t1 | A0A396HP19 | 98.4 | 980 | 16 | 0 | 1 | 980 | 1 | 980 | 0.0e+00 | 1877.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene59366 | 0.839781 | 1.29E-57 | -1.69E-46 |
| MS.gene049283 | MS.gene59366 | 0.808097 | 3.66E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene59366 | 0.814543 | 1.46E-51 | -1.69E-46 |
| MS.gene049685 | MS.gene59366 | 0.8127 | 3.72E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene59366 | 0.816383 | 5.69E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene59366 | 0.822029 | 2.95E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene59366 | 0.804213 | 2.41E-49 | -1.69E-46 |
| MS.gene050084 | MS.gene59366 | 0.811469 | 6.89E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene59366 | 0.8231 | 1.66E-53 | -1.69E-46 |
| MS.gene050114 | MS.gene59366 | 0.814691 | 1.35E-51 | -1.69E-46 |
| MS.gene050116 | MS.gene59366 | 0.828939 | 6.80E-55 | -1.69E-46 |
| MS.gene050213 | MS.gene59366 | 0.846292 | 2.38E-59 | -1.69E-46 |
| MS.gene050224 | MS.gene59366 | 0.827656 | 1.39E-54 | -1.69E-46 |
| MS.gene050359 | MS.gene59366 | 0.844122 | 9.19E-59 | -1.69E-46 |
| MS.gene050361 | MS.gene59366 | 0.824759 | 6.78E-54 | -1.69E-46 |
| MS.gene050386 | MS.gene59366 | 0.803141 | 4.02E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene59366 | 0.832195 | 1.09E-55 | -1.69E-46 |
| MS.gene050551 | MS.gene59366 | 0.857157 | 1.98E-62 | -1.69E-46 |
| MS.gene050556 | MS.gene59366 | 0.857994 | 1.12E-62 | -1.69E-46 |
| MS.gene050646 | MS.gene59366 | 0.850995 | 1.18E-60 | -1.69E-46 |
| MS.gene050654 | MS.gene59366 | 0.851002 | 1.18E-60 | -1.69E-46 |
| MS.gene050689 | MS.gene59366 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene050838 | MS.gene59366 | 0.843062 | 1.77E-58 | -1.69E-46 |
| MS.gene050931 | MS.gene59366 | 0.825406 | 4.77E-54 | -1.69E-46 |
| MS.gene050941 | MS.gene59366 | 0.811775 | 5.91E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene59366 | 0.800269 | 1.56E-48 | -1.69E-46 |
| MS.gene051102 | MS.gene59366 | 0.844955 | 5.49E-59 | -1.69E-46 |
| MS.gene051184 | MS.gene59366 | 0.802199 | 6.28E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene59366 | 0.808282 | 3.34E-50 | -1.69E-46 |
| MS.gene051233 | MS.gene59366 | 0.807318 | 5.36E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene59366 | 0.841132 | 5.72E-58 | -1.69E-46 |
| MS.gene051381 | MS.gene59366 | 0.847131 | 1.40E-59 | -1.69E-46 |
| MS.gene051724 | MS.gene59366 | 0.809385 | 1.94E-50 | -1.69E-46 |
| MS.gene051819 | MS.gene59366 | 0.807914 | 4.00E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene59366 | 0.812199 | 4.78E-51 | -1.69E-46 |
| MS.gene051856 | MS.gene59366 | 0.81516 | 1.07E-51 | -1.69E-46 |
| MS.gene052016 | MS.gene59366 | 0.821725 | 3.47E-53 | -1.69E-46 |
| MS.gene052072 | MS.gene59366 | 0.805429 | 1.34E-49 | -1.69E-46 |
| MS.gene052242 | MS.gene59366 | -0.847594 | 1.05E-59 | -1.69E-46 |
| MS.gene052307 | MS.gene59366 | 0.874655 | 5.70E-68 | -1.69E-46 |
| MS.gene052335 | MS.gene59366 | 0.813574 | 2.39E-51 | -1.69E-46 |
| MS.gene052342 | MS.gene59366 | 0.814899 | 1.22E-51 | -1.69E-46 |
| MS.gene052397 | MS.gene59366 | 0.811912 | 5.52E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene59366 | 0.807598 | 4.68E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene59366 | 0.829203 | 5.87E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene59366 | 0.908089 | 2.50E-81 | -1.69E-46 |
| MS.gene052665 | MS.gene59366 | 0.808429 | 3.11E-50 | -1.69E-46 |
| MS.gene052775 | MS.gene59366 | 0.820385 | 7.05E-53 | -1.69E-46 |
| MS.gene052776 | MS.gene59366 | 0.867011 | 1.87E-65 | -1.69E-46 |
| MS.gene052932 | MS.gene59366 | 0.824644 | 7.22E-54 | -1.69E-46 |
| MS.gene052994 | MS.gene59366 | 0.841628 | 4.23E-58 | -1.69E-46 |
| MS.gene053079 | MS.gene59366 | 0.87916 | 1.56E-69 | -1.69E-46 |
| MS.gene053143 | MS.gene59366 | 0.872307 | 3.52E-67 | -1.69E-46 |
| MS.gene053167 | MS.gene59366 | 0.815418 | 9.34E-52 | -1.69E-46 |
| MS.gene053486 | MS.gene59366 | 0.821333 | 4.27E-53 | -1.69E-46 |
| MS.gene053620 | MS.gene59366 | 0.814695 | 1.35E-51 | -1.69E-46 |
| MS.gene053726 | MS.gene59366 | 0.807165 | 5.78E-50 | -1.69E-46 |
| MS.gene054558 | MS.gene59366 | 0.815374 | 9.55E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene59366 | 0.804647 | 1.95E-49 | -1.69E-46 |
| MS.gene054709 | MS.gene59366 | 0.807367 | 5.23E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene59366 | 0.872789 | 2.43E-67 | -1.69E-46 |
| MS.gene054892 | MS.gene59366 | 0.803107 | 4.08E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene59366 | 0.80833 | 3.27E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene59366 | 0.822119 | 2.81E-53 | -1.69E-46 |
| MS.gene055313 | MS.gene59366 | 0.809102 | 2.23E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene59366 | 0.865774 | 4.63E-65 | -1.69E-46 |
| MS.gene055513 | MS.gene59366 | 0.850967 | 1.21E-60 | -1.69E-46 |
| MS.gene055864 | MS.gene59366 | 0.847285 | 1.27E-59 | -1.69E-46 |
| MS.gene056045 | MS.gene59366 | 0.843677 | 1.21E-58 | -1.69E-46 |
| MS.gene056097 | MS.gene59366 | 0.858018 | 1.10E-62 | -1.69E-46 |
| MS.gene05615 | MS.gene59366 | 0.802247 | 6.14E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene59366 | 0.870764 | 1.14E-66 | -1.69E-46 |
| MS.gene056308 | MS.gene59366 | 0.843919 | 1.04E-58 | -1.69E-46 |
| MS.gene056390 | MS.gene59366 | 0.824924 | 6.20E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene59366 | 0.855132 | 7.74E-62 | -1.69E-46 |
| MS.gene056578 | MS.gene59366 | 0.81705 | 4.03E-52 | -1.69E-46 |
| MS.gene056622 | MS.gene59366 | 0.802369 | 5.80E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene59366 | 0.82525 | 5.19E-54 | -1.69E-46 |
| MS.gene056831 | MS.gene59366 | 0.804452 | 2.15E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene59366 | 0.803614 | 3.20E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene59366 | -0.804792 | 1.82E-49 | -1.69E-46 |
| MS.gene057919 | MS.gene59366 | 0.841133 | 5.71E-58 | -1.69E-46 |
| MS.gene058010 | MS.gene59366 | 0.805628 | 1.22E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene59366 | 0.815226 | 1.03E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene59366 | 0.804367 | 2.23E-49 | -1.69E-46 |
| MS.gene058289 | MS.gene59366 | 0.842878 | 1.98E-58 | -1.69E-46 |
| MS.gene058292 | MS.gene59366 | 0.820379 | 7.08E-53 | -1.69E-46 |
| MS.gene058330 | MS.gene59366 | 0.815715 | 8.02E-52 | -1.69E-46 |
| MS.gene058638 | MS.gene59366 | 0.907848 | 3.25E-81 | -1.69E-46 |
| MS.gene058639 | MS.gene59366 | 0.906186 | 1.94E-80 | -1.69E-46 |
| MS.gene058647 | MS.gene59366 | 0.833827 | 4.26E-56 | -1.69E-46 |
| MS.gene058649 | MS.gene59366 | 0.834157 | 3.52E-56 | -1.69E-46 |
| MS.gene058681 | MS.gene59366 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene058758 | MS.gene59366 | 0.864013 | 1.65E-64 | -1.69E-46 |
| MS.gene058852 | MS.gene59366 | 0.8116 | 6.46E-51 | -1.69E-46 |
| MS.gene058919 | MS.gene59366 | 0.802841 | 4.63E-49 | -1.69E-46 |
| MS.gene059007 | MS.gene59366 | 0.855388 | 6.53E-62 | -1.69E-46 |
| MS.gene059170 | MS.gene59366 | 0.840648 | 7.66E-58 | -1.69E-46 |
| MS.gene059171 | MS.gene59366 | 0.846035 | 2.80E-59 | -1.69E-46 |
| MS.gene059439 | MS.gene59366 | 0.815675 | 8.19E-52 | -1.69E-46 |
| MS.gene059713 | MS.gene59366 | 0.823558 | 1.30E-53 | -1.69E-46 |
| MS.gene059725 | MS.gene59366 | 0.832916 | 7.19E-56 | -1.69E-46 |
| MS.gene059965 | MS.gene59366 | 0.832635 | 8.45E-56 | -1.69E-46 |
| MS.gene060296 | MS.gene59366 | 0.81783 | 2.69E-52 | -1.69E-46 |
| MS.gene060380 | MS.gene59366 | 0.820297 | 7.39E-53 | -1.69E-46 |
| MS.gene060400 | MS.gene59366 | 0.852696 | 3.90E-61 | -1.69E-46 |
| MS.gene06052 | MS.gene59366 | 0.817672 | 2.92E-52 | -1.69E-46 |
| MS.gene060563 | MS.gene59366 | 0.868173 | 7.95E-66 | -1.69E-46 |
| MS.gene060637 | MS.gene59366 | 0.826922 | 2.08E-54 | -1.69E-46 |
| MS.gene060932 | MS.gene59366 | 0.828744 | 7.58E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene59366 | 0.841599 | 4.31E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene59366 | 0.805569 | 1.25E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene59366 | 0.875875 | 2.18E-68 | -1.69E-46 |
| MS.gene061100 | MS.gene59366 | 0.855021 | 8.34E-62 | -1.69E-46 |
| MS.gene06121 | MS.gene59366 | 0.808473 | 3.04E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59366.t1 | MTR_5g020140 | 87.551 | 980 | 41 | 4 | 1 | 980 | 1 | 899 | 0.0 | 1709 |
| MS.gene59366.t1 | MTR_8g077680 | 74.824 | 997 | 226 | 7 | 1 | 979 | 1 | 990 | 0.0 | 1513 |
| MS.gene59366.t1 | MTR_5g020140 | 98.093 | 734 | 14 | 0 | 247 | 980 | 16 | 749 | 0.0 | 1474 |
| MS.gene59366.t1 | MTR_8g072800 | 96.491 | 57 | 2 | 0 | 522 | 578 | 34 | 90 | 8.53e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59366.t1 | AT4G36630 | 69.630 | 1001 | 282 | 11 | 1 | 980 | 1 | 1000 | 0.0 | 1400 |
| MS.gene59366.t1 | AT4G36630 | 69.069 | 902 | 257 | 11 | 1 | 881 | 1 | 901 | 0.0 | 1249 |
Find 201 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCCTCGGTAAAAGTTTA+AGG | 0.125485 | 5.4:-12309568 | None:intergenic |
| ACTTAAATGCTCAACAAAAT+TGG | 0.163182 | 5.4:+12308760 | MS.gene59366:CDS |
| TTCGATCTTGCCGTTGAAAT+TGG | 0.169757 | 5.4:-12300727 | None:intergenic |
| CAGGATTTGCAATCATTTCT+TGG | 0.207715 | 5.4:+12309764 | MS.gene59366:intron |
| GGTAATATTTCGGTTGGTTC+TGG | 0.234591 | 5.4:+12306840 | MS.gene59366:CDS |
| TTCTATTCAAGGTCTCTTTC+CGG | 0.249789 | 5.4:+12302324 | MS.gene59366:CDS |
| GTCAGGTATTTCAGATGATA+TGG | 0.262102 | 5.4:+12306256 | MS.gene59366:CDS |
| CTCCAAGCATTGCTTCTTAC+TGG | 0.273542 | 5.4:+12306900 | MS.gene59366:CDS |
| CAATATGATAATGCCAATTC+TGG | 0.288745 | 5.4:-12309167 | None:intergenic |
| CCGTCGGGAGAGCTGCTTCT+TGG | 0.296209 | 5.4:+12301832 | MS.gene59366:CDS |
| TGAGAATTCCAGAACAAGTA+TGG | 0.303616 | 5.4:-12308282 | None:intergenic |
| TCTCTGTGCCGAAAGAAAAT+AGG | 0.306759 | 5.4:+12310180 | MS.gene59366:CDS |
| ATTGTCCAACTAACTGCTTC+TGG | 0.310438 | 5.4:+12302581 | MS.gene59366:CDS |
| ACCGAGGGAGACTAAGTTAC+AGG | 0.317122 | 5.4:+12309580 | MS.gene59366:CDS |
| GGGGTCTTTGTGGATCAAAA+TGG | 0.325153 | 5.4:+12302006 | MS.gene59366:CDS |
| TTTGTGGAGGTGAAAGAGTT+TGG | 0.330078 | 5.4:+12301658 | MS.gene59366:CDS |
| AAGTACTTAGCTTGCATGTT+TGG | 0.331692 | 5.4:-12308404 | None:intergenic |
| ATATATGTTTGGGGATTAGA+AGG | 0.342950 | 5.4:+12301722 | MS.gene59366:CDS |
| AACGAATCATAATATGCTTA+TGG | 0.346723 | 5.4:+12306322 | MS.gene59366:CDS |
| AGTTGTCTTTGGAAGGATAA+TGG | 0.347247 | 5.4:-12306171 | None:intergenic |
| TGATCGGAGAATTCTGTTTC+CGG | 0.348640 | 5.4:-12300816 | None:intergenic |
| CGCAGGTGGGATAGAATAAA+TGG | 0.349821 | 5.4:+12309536 | MS.gene59366:CDS |
| AATAGATTTGCATAAGCAAT+AGG | 0.353003 | 5.4:-12309247 | None:intergenic |
| CTGTTTCCGGCGAGTAGATT+CGG | 0.354495 | 5.4:-12300803 | None:intergenic |
| AGGATTTGCAATCATTTCTT+GGG | 0.359164 | 5.4:+12309765 | MS.gene59366:intron |
| AAGAGGGATCAATTCATATA+AGG | 0.360242 | 5.4:+12302672 | MS.gene59366:CDS |
| GTAGCTTCATGTTCCAGAAT+TGG | 0.360731 | 5.4:+12309154 | MS.gene59366:intron |
| GTTTCATAGATTACCAAGTT+TGG | 0.361774 | 5.4:+12300953 | MS.gene59366:CDS |
| GACGGATCCCATACTTGTTC+TGG | 0.362031 | 5.4:+12308274 | MS.gene59366:CDS |
| ACCGCTATCGTTTCCAAACT+TGG | 0.362738 | 5.4:-12300966 | None:intergenic |
| GGTCTCTTTCCGGTTCCTCT+TGG | 0.363301 | 5.4:+12302334 | MS.gene59366:CDS |
| TGCATTCTCGTCGGTTGGTA+AGG | 0.363589 | 5.4:-12306282 | None:intergenic |
| TCATGAACAATAGTTGTCTT+TGG | 0.365434 | 5.4:-12306182 | None:intergenic |
| TGGAAATATACCAGCTGATA+TGG | 0.371949 | 5.4:+12308355 | MS.gene59366:CDS |
| ATGAATGAGAATGCCATATC+TGG | 0.374201 | 5.4:+12308443 | MS.gene59366:CDS |
| AAATTATTGTCGGCTTTAGA+AGG | 0.375333 | 5.4:+12308813 | MS.gene59366:CDS |
| GACCAACAAATCCTGCCTTC+AGG | 0.381825 | 5.4:-12302039 | None:intergenic |
| CCAGAGAAGTTGGACATTGA+TGG | 0.384030 | 5.4:+12306206 | MS.gene59366:CDS |
| TCGATCTTGCCGTTGAAATT+GGG | 0.395645 | 5.4:-12300726 | None:intergenic |
| TAACTCCGTGATACTTGCTT+TGG | 0.398361 | 5.4:+12302297 | MS.gene59366:CDS |
| GGAGAACATTGGGGTCTTTG+TGG | 0.400346 | 5.4:+12301996 | MS.gene59366:intron |
| CTTAAATGCTCAACAAAATT+GGG | 0.401030 | 5.4:+12308761 | MS.gene59366:CDS |
| TCAGGGGCGTGGTAATATTT+CGG | 0.401268 | 5.4:+12306830 | MS.gene59366:intron |
| TGACGAAACTCTGGAAAGAT+AGG | 0.401467 | 5.4:-12306237 | None:intergenic |
| CTCTGTGCCGAAAGAAAATA+GGG | 0.407080 | 5.4:+12310181 | MS.gene59366:CDS |
| CCATCAATGTCCAACTTCTC+TGG | 0.407872 | 5.4:-12306206 | None:intergenic |
| GCGACAGAGCGAAAACCTTC+AGG | 0.409251 | 5.4:+12309844 | MS.gene59366:CDS |
| TTCCTGAAGGCAGGATTTGT+TGG | 0.411916 | 5.4:+12302037 | MS.gene59366:CDS |
| AACACTTCCATTGAAACAAC+AGG | 0.413460 | 5.4:-12300888 | None:intergenic |
| ATTGTCTCTGTATGTTCATA+AGG | 0.416059 | 5.4:+12308941 | MS.gene59366:CDS |
| AAGCTTGCTGTGGTCTTTCG+AGG | 0.416092 | 5.4:-12309275 | None:intergenic |
| TTTCGGTTGGTTCTGGAGCT+CGG | 0.416243 | 5.4:+12306847 | MS.gene59366:CDS |
| GCACGTAGACTTGAATCTTC+AGG | 0.417466 | 5.4:-12302644 | None:intergenic |
| CTCTTACTCGGTTGCTCCGA+TGG | 0.419869 | 5.4:+12300774 | MS.gene59366:CDS |
| ATAACTATGCATCCTACAAT+AGG | 0.421989 | 5.4:+12306438 | MS.gene59366:CDS |
| CTCCCTCGGTAAAAGTTTAA+GGG | 0.423938 | 5.4:-12309567 | None:intergenic |
| ATAGTTTGTATCAACGGATA+AGG | 0.424246 | 5.4:-12302238 | None:intergenic |
| AGATTCTTCTCGAGTGTGTA+AGG | 0.425089 | 5.4:-12300846 | None:intergenic |
| GAAGAAGTTCAAGAGCTTGC+CGG | 0.425673 | 5.4:-12307052 | None:intergenic |
| GCTTTGGATAATTCTATTCA+AGG | 0.429881 | 5.4:+12302313 | MS.gene59366:CDS |
| CTTCTCGAGTGTGTAAGGTT+TGG | 0.431846 | 5.4:-12300841 | None:intergenic |
| GTGTGGGGAGAATATATGTT+TGG | 0.431947 | 5.4:+12301711 | MS.gene59366:CDS |
| AGACGTTTCAGCAGAGCCTC+TGG | 0.433778 | 5.4:-12308852 | None:intergenic |
| GTCGGCTTTAGAAGGCATAT+CGG | 0.433838 | 5.4:+12308821 | MS.gene59366:CDS |
| TGTGGGGAGAATATATGTTT+GGG | 0.438071 | 5.4:+12301712 | MS.gene59366:CDS |
| TCCGGTTCCTCTTGGAGCCC+AGG | 0.438180 | 5.4:+12302342 | MS.gene59366:CDS |
| ACCTGGGCTCCAAGAGGAAC+CGG | 0.441245 | 5.4:-12302343 | None:intergenic |
| CTTCCTCAACTGAGACCCTT+TGG | 0.441954 | 5.4:-12310289 | None:intergenic |
| ACCTATCTGACGTACTTGAT+TGG | 0.443552 | 5.4:+12308730 | MS.gene59366:CDS |
| AAGAAAATTGCGGAGATTGA+GGG | 0.445231 | 5.4:+12309392 | MS.gene59366:CDS |
| AGCTTTGCTGCCTAGATTCG+TGG | 0.448234 | 5.4:+12302104 | MS.gene59366:CDS |
| CTCATGGACTTCACCATGTC+CGG | 0.448544 | 5.4:-12301685 | None:intergenic |
| GGCATTATCATATTGTGATC+GGG | 0.449096 | 5.4:+12309175 | MS.gene59366:CDS |
| TGCACGAGAGTGCTCCCGTT+GGG | 0.451076 | 5.4:-12310225 | None:intergenic |
| GGGTCTTTGTGGATCAAAAT+GGG | 0.452687 | 5.4:+12302007 | MS.gene59366:CDS |
| TGAAGAGCGTGCAATATTGT+TGG | 0.454529 | 5.4:+12308893 | MS.gene59366:CDS |
| TGAAATACCTGACGAAACTC+TGG | 0.458530 | 5.4:-12306246 | None:intergenic |
| AGTTTCCAGAAGCAGTTAGT+TGG | 0.458669 | 5.4:-12302586 | None:intergenic |
| TGGTGCACTACCTCTAGAAA+TGG | 0.459530 | 5.4:-12309339 | None:intergenic |
| AGCAGCTCTCCCGACGGAAT+AGG | 0.460605 | 5.4:-12301826 | None:intergenic |
| TTCGGTTGGTTCTGGAGCTC+GGG | 0.460897 | 5.4:+12306848 | MS.gene59366:CDS |
| TGGTTCTGGAGCTCGGGAGA+TGG | 0.465680 | 5.4:+12306854 | MS.gene59366:CDS |
| GAAGAGCGTGCAATATTGTT+GGG | 0.469594 | 5.4:+12308894 | MS.gene59366:CDS |
| TGTTCATGAGCCAGAGAAGT+TGG | 0.471501 | 5.4:+12306196 | MS.gene59366:CDS |
| CAGAGAAGTTGGACATTGAT+GGG | 0.472173 | 5.4:+12306207 | MS.gene59366:CDS |
| ATTGTGGATGTAGGTGGTAG+GGG | 0.472436 | 5.4:+12301634 | MS.gene59366:intron |
| TATCTTTCCAGAGTTTCGTC+AGG | 0.483789 | 5.4:+12306239 | MS.gene59366:CDS |
| GCATTCTCGTCGGTTGGTAA+GGG | 0.485407 | 5.4:-12306281 | None:intergenic |
| AAAGAAAATTGCGGAGATTG+AGG | 0.486392 | 5.4:+12309391 | MS.gene59366:CDS |
| GCAGCTTTAGAAATACTAAG+AGG | 0.493048 | 5.4:+12306933 | MS.gene59366:CDS |
| TCTTGAACTTCTTCACAAGT+TGG | 0.493830 | 5.4:+12307061 | MS.gene59366:CDS |
| AAACATGCAAGCTAAGTACT+TGG | 0.495926 | 5.4:+12308406 | MS.gene59366:CDS |
| TCGGCTTTAGAAGGCATATC+GGG | 0.497897 | 5.4:+12308822 | MS.gene59366:CDS |
| TGGCATTATCATATTGTGAT+CGG | 0.499192 | 5.4:+12309174 | MS.gene59366:CDS |
| GGCAGCAAAGCTATAGCATA+CGG | 0.502952 | 5.4:-12302093 | None:intergenic |
| AAGTCTACGTGCTGCAAAAG+AGG | 0.503094 | 5.4:+12302655 | MS.gene59366:CDS |
| TGAACTTCTTCACAAGTTGG+TGG | 0.503711 | 5.4:+12307064 | MS.gene59366:CDS |
| GCCAATCAAGTACGTCAGAT+AGG | 0.507056 | 5.4:-12308731 | None:intergenic |
| TCGGTTACCTCCACGAATCT+AGG | 0.507909 | 5.4:-12302114 | None:intergenic |
| TGGCAATCTGCAAAATGAAA+TGG | 0.508855 | 5.4:+12308463 | MS.gene59366:CDS |
| GGGCGTGGTAATATTTCGGT+TGG | 0.509595 | 5.4:+12306834 | MS.gene59366:CDS |
| GTATCACGGAGTTACTGCTT+TGG | 0.509901 | 5.4:-12302288 | None:intergenic |
| TCCTTGATCTGTTGAGCCGC+AGG | 0.510060 | 5.4:+12309519 | MS.gene59366:CDS |
| GAAGAAGCCTGTTGTTTCAA+TGG | 0.510917 | 5.4:+12300881 | MS.gene59366:CDS |
| GGATAGAATAAATGGAGCTC+AGG | 0.513311 | 5.4:+12309544 | MS.gene59366:CDS |
| GGAAACTTATTCCTGAAGGC+AGG | 0.513773 | 5.4:+12302028 | MS.gene59366:CDS |
| ACCTTTGTGTAATTTCAGAC+TGG | 0.516556 | 5.4:-12307103 | None:intergenic |
| TGTGAAGAAATACTTCGAAA+AGG | 0.521444 | 5.4:+12306981 | MS.gene59366:CDS |
| AATTGTGGATGTAGGTGGTA+GGG | 0.522536 | 5.4:+12301633 | MS.gene59366:intron |
| TTGTTGGTCAGAGGCACCCT+TGG | 0.525914 | 5.4:+12302053 | MS.gene59366:CDS |
| GAACAATAGTTGTCTTTGGA+AGG | 0.526784 | 5.4:-12306178 | None:intergenic |
| ATTGAGAAGGCTACTGCGGA+GGG | 0.528197 | 5.4:+12306383 | MS.gene59366:CDS |
| AAATGAAAGCAGTGACCAAA+GGG | 0.529020 | 5.4:+12310274 | MS.gene59366:CDS |
| TTAGTAGTGCCTATTCCGTC+GGG | 0.529634 | 5.4:+12301817 | MS.gene59366:CDS |
| ATTCTCCCCACACCAACTCA+TGG | 0.529806 | 5.4:-12301701 | None:intergenic |
| AGATACTCAACAATGTCCTC+AGG | 0.530213 | 5.4:-12307131 | None:intergenic |
| ACCTGTAACTTAGTCTCCCT+CGG | 0.533888 | 5.4:-12309581 | None:intergenic |
| TTTAGTAGTGCCTATTCCGT+CGG | 0.534864 | 5.4:+12301816 | MS.gene59366:CDS |
| TTCTGAATCACGACTTCCAA+GGG | 0.535554 | 5.4:-12302069 | None:intergenic |
| GGTGAAAGAGTTTGGTGTAC+CGG | 0.538784 | 5.4:+12301666 | MS.gene59366:CDS |
| TGTTGTTTCAATGGAAGTGT+TGG | 0.539807 | 5.4:+12300890 | MS.gene59366:CDS |
| TTGATCTGTTGAGCCGCAGG+TGG | 0.540467 | 5.4:+12309522 | MS.gene59366:CDS |
| AATTATTGGTGTCAGGGGCG+TGG | 0.546346 | 5.4:+12306819 | MS.gene59366:intron |
| GACGGAATAGGCACTACTAA+AGG | 0.548113 | 5.4:-12301814 | None:intergenic |
| GTCCAGTAAGAAGCAATGCT+TGG | 0.549261 | 5.4:-12306902 | None:intergenic |
| TATGAGTTCACCATATCAGC+TGG | 0.551024 | 5.4:-12308365 | None:intergenic |
| AGTGCTGCATTCTCGTCGGT+TGG | 0.551147 | 5.4:-12306287 | None:intergenic |
| TTGTGGATGTAGGTGGTAGG+GGG | 0.553180 | 5.4:+12301635 | MS.gene59366:intron |
| TGTGTAAGGTTTGGAATGAT+CGG | 0.553224 | 5.4:-12300832 | None:intergenic |
| TGGGAGCTATGAGGAGGCTG+TGG | 0.553983 | 5.4:+12306094 | MS.gene59366:CDS |
| GTCTTTGGAAGGATAATGGA+TGG | 0.554431 | 5.4:-12306167 | None:intergenic |
| ACCTGCGGCTCAACAGATCA+AGG | 0.554797 | 5.4:-12309520 | None:intergenic |
| TCTTGATCACTGAACAGTTA+CGG | 0.555310 | 5.4:-12309817 | None:intergenic |
| ACCATCACTCTTGCTACTGT+CGG | 0.559526 | 5.4:-12309447 | None:intergenic |
| TCAGAGGAAAGCAGTTGTGA+AGG | 0.560470 | 5.4:+12310137 | MS.gene59366:CDS |
| TTCAAGTGCTGCATTCTCGT+CGG | 0.560647 | 5.4:-12306291 | None:intergenic |
| GCGGTTATCACAAAAGCTAA+AGG | 0.565369 | 5.4:+12300984 | MS.gene59366:CDS |
| AGAACAATAGTTTGTATCAA+CGG | 0.565871 | 5.4:-12302244 | None:intergenic |
| TTTGCGAGACAAAAGCGTGT+TGG | 0.569829 | 5.4:+12301050 | MS.gene59366:CDS |
| AAATTGTGGATGTAGGTGGT+AGG | 0.570289 | 5.4:+12301632 | MS.gene59366:intron |
| TGACCAAAGGGTCTCAGTTG+AGG | 0.573404 | 5.4:+12310286 | MS.gene59366:CDS |
| CTTCTGAATCACGACTTCCA+AGG | 0.573584 | 5.4:-12302070 | None:intergenic |
| GGGAGAGCTGCTTCTTGGAA+AGG | 0.574605 | 5.4:+12301837 | MS.gene59366:CDS |
| TCTCATTTCAAAGCTTGCTG+TGG | 0.578557 | 5.4:-12309285 | None:intergenic |
| AGTCTACGTGCTGCAAAAGA+GGG | 0.579275 | 5.4:+12302656 | MS.gene59366:CDS |
| AAAAGCTCAATAGTTTGGGA+TGG | 0.580220 | 5.4:-12308326 | None:intergenic |
| TTCAAATGGTGCTTTGTCCG+AGG | 0.583371 | 5.4:+12301765 | MS.gene59366:CDS |
| GAGAATTCCAGAACAAGTAT+GGG | 0.584605 | 5.4:-12308281 | None:intergenic |
| AATGGGAAACTTATTCCTGA+AGG | 0.585662 | 5.4:+12302024 | MS.gene59366:CDS |
| GATGCAGCCGCTATGTGAGA+CGG | 0.586279 | 5.4:+12308256 | MS.gene59366:intron |
| AAAATGAAAGCAGTGACCAA+AGG | 0.587095 | 5.4:+12310273 | MS.gene59366:CDS |
| TATATGTTTGGGGATTAGAA+GGG | 0.589030 | 5.4:+12301723 | MS.gene59366:CDS |
| TGCGGAGATTGAGGGTGCAG+AGG | 0.590744 | 5.4:+12309400 | MS.gene59366:CDS |
| TACGGTTCAAAACTCTTACT+CGG | 0.592902 | 5.4:+12300762 | MS.gene59366:CDS |
| ATCTCTCCGAATCTACTCGC+CGG | 0.594958 | 5.4:+12300797 | MS.gene59366:CDS |
| CAGAGAACACATGCTATCGC+TGG | 0.594960 | 5.4:-12310163 | None:intergenic |
| AGGCAGGATTTGTTGGTCAG+AGG | 0.601301 | 5.4:+12302044 | MS.gene59366:CDS |
| GTGAAGTCCATGAGTTGGTG+TGG | 0.601993 | 5.4:+12301694 | MS.gene59366:CDS |
| GAACTCGTTCCCAATTTCAA+CGG | 0.603272 | 5.4:+12300717 | MS.gene59366:CDS |
| ACAAGTGCAAGTCATTGCAC+CGG | 0.604273 | 5.4:+12307033 | MS.gene59366:CDS |
| AGAAAACTTATACCCCAACT+AGG | 0.606288 | 5.4:+12308787 | MS.gene59366:CDS |
| TGATCTGTTGAGCCGCAGGT+GGG | 0.606981 | 5.4:+12309523 | MS.gene59366:CDS |
| TATTGAGAAGGCTACTGCGG+AGG | 0.609202 | 5.4:+12306382 | MS.gene59366:CDS |
| CATTTATTCTATCCCACCTG+CGG | 0.610718 | 5.4:-12309535 | None:intergenic |
| CTCTACTATCATGCTTGATG+AGG | 0.611072 | 5.4:+12309496 | MS.gene59366:CDS |
| TGAAGTCCATGAGTTGGTGT+GGG | 0.613486 | 5.4:+12301695 | MS.gene59366:CDS |
| TGAAAATGGGAGCTATGAGG+AGG | 0.616857 | 5.4:+12306088 | MS.gene59366:CDS |
| GCACGAGAGTGCTCCCGTTG+GGG | 0.617314 | 5.4:-12310224 | None:intergenic |
| ACCAAGTTTGGAAACGATAG+CGG | 0.617363 | 5.4:+12300965 | MS.gene59366:CDS |
| AGAGTTTGGTGTACCGGACA+TGG | 0.623876 | 5.4:+12301672 | MS.gene59366:CDS |
| TGCTTCTGGAAACTTTGAAG+AGG | 0.624824 | 5.4:+12302595 | MS.gene59366:CDS |
| GAGACAATGCCAGTTCATGT+TGG | 0.626423 | 5.4:-12308926 | None:intergenic |
| AAATATTTGCAGAAGAAGAG+AGG | 0.627160 | 5.4:+12306353 | MS.gene59366:CDS |
| AAGCAGCTTGCACAATGACA+AGG | 0.629811 | 5.4:-12302618 | None:intergenic |
| CAAAATACAGCCATTTCTAG+AGG | 0.630041 | 5.4:+12309329 | MS.gene59366:CDS |
| ATCGAATCCATCGAATCCTA+CGG | 0.634247 | 5.4:+12300744 | MS.gene59366:CDS |
| ATTATCCAAAGCAAGTATCA+CGG | 0.634296 | 5.4:-12302302 | None:intergenic |
| GTGCACGAGAGTGCTCCCGT+TGG | 0.634412 | 5.4:-12310226 | None:intergenic |
| CCAAGAAGCAGCTCTCCCGA+CGG | 0.635711 | 5.4:-12301832 | None:intergenic |
| GGACATTGTTGAGTATCTCA+AGG | 0.638437 | 5.4:+12307136 | MS.gene59366:CDS |
| GTAGATTCGGAGAGATCCAT+CGG | 0.640265 | 5.4:-12300790 | None:intergenic |
| TCTTCATATAAAGCATCTTG+AGG | 0.647366 | 5.4:-12308876 | None:intergenic |
| AAGATGAACTGTATAGTCAG+AGG | 0.648837 | 5.4:+12310121 | MS.gene59366:CDS |
| ACCGACAGTAGCAAGAGTGA+TGG | 0.649366 | 5.4:+12309446 | MS.gene59366:CDS |
| TACACAAAGGTTCAAGCCTG+AGG | 0.651020 | 5.4:+12307115 | MS.gene59366:CDS |
| ACATGGTGAAGTCCATGAGT+TGG | 0.651327 | 5.4:+12301689 | MS.gene59366:CDS |
| GTGGGGAGAATATATGTTTG+GGG | 0.653335 | 5.4:+12301713 | MS.gene59366:CDS |
| TACAGTACCTGGGCTCCAAG+AGG | 0.653562 | 5.4:-12302349 | None:intergenic |
| CCGAGGATCAAAGAAAATTG+CGG | 0.658383 | 5.4:+12309382 | MS.gene59366:CDS |
| TGATGCGGATGAATTTAATG+AGG | 0.663812 | 5.4:+12309469 | MS.gene59366:CDS |
| CGTAGACTTGAATCTTCAGG+TGG | 0.664174 | 5.4:-12302641 | None:intergenic |
| AGAGAAGTTGGACATTGATG+GGG | 0.668723 | 5.4:+12306208 | MS.gene59366:CDS |
| TGGATAAAGAGAAAGCACAT+AGG | 0.673745 | 5.4:-12306147 | None:intergenic |
| GATGCGGATGAATTTAATGA+GGG | 0.675828 | 5.4:+12309470 | MS.gene59366:CDS |
| TAGCAAGAGTGATGGTGATG+CGG | 0.679498 | 5.4:+12309454 | MS.gene59366:CDS |
| GAAGTCCATGAGTTGGTGTG+GGG | 0.692506 | 5.4:+12301696 | MS.gene59366:CDS |
| GCCAGTCTGAAATTACACAA+AGG | 0.698565 | 5.4:+12307102 | MS.gene59366:CDS |
| TTTGCTGCCTAGATTCGTGG+AGG | 0.700668 | 5.4:+12302107 | MS.gene59366:CDS |
| ATGGGATCCGTCTCACATAG+CGG | 0.707790 | 5.4:-12308263 | None:intergenic |
| GGAATAGGCACTACTAAAGG+CGG | 0.715805 | 5.4:-12301811 | None:intergenic |
| CATATCGGGATACAATCCAG+AGG | 0.742394 | 5.4:+12308836 | MS.gene59366:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12300690 | 12310317 | 12300690 | ID=MS.gene59366 |
| chr5.4 | mRNA | 12300690 | 12310317 | 12300690 | ID=MS.gene59366.t1;Parent=MS.gene59366 |
| chr5.4 | exon | 12300690 | 12301089 | 12300690 | ID=MS.gene59366.t1.exon1;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12300690 | 12301089 | 12300690 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12301647 | 12301858 | 12301647 | ID=MS.gene59366.t1.exon2;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12301647 | 12301858 | 12301647 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12301997 | 12302128 | 12301997 | ID=MS.gene59366.t1.exon3;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12301997 | 12302128 | 12301997 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12302220 | 12302363 | 12302220 | ID=MS.gene59366.t1.exon4;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12302220 | 12302363 | 12302220 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12302581 | 12302693 | 12302581 | ID=MS.gene59366.t1.exon5;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12302581 | 12302693 | 12302581 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12306070 | 12306478 | 12306070 | ID=MS.gene59366.t1.exon6;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12306070 | 12306478 | 12306070 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12306834 | 12307157 | 12306834 | ID=MS.gene59366.t1.exon7;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12306834 | 12307157 | 12306834 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12308263 | 12308484 | 12308263 | ID=MS.gene59366.t1.exon8;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12308263 | 12308484 | 12308263 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12308720 | 12308962 | 12308720 | ID=MS.gene59366.t1.exon9;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12308720 | 12308962 | 12308720 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12309158 | 12309601 | 12309158 | ID=MS.gene59366.t1.exon10;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12309158 | 12309601 | 12309158 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12309767 | 12309865 | 12309767 | ID=MS.gene59366.t1.exon11;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12309767 | 12309865 | 12309767 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| chr5.4 | exon | 12310117 | 12310317 | 12310117 | ID=MS.gene59366.t1.exon12;Parent=MS.gene59366.t1 |
| chr5.4 | CDS | 12310117 | 12310317 | 12310117 | ID=cds.MS.gene59366.t1;Parent=MS.gene59366.t1 |
| Gene Sequence |
| Protein sequence |
