Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40330.t1 | XP_013461970.1 | 87.4 | 215 | 27 | 0 | 1 | 215 | 1 | 215 | 2.80E-97 | 364.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40330.t1 | Q3SZX8 | 66.0 | 200 | 67 | 1 | 1 | 199 | 1 | 200 | 3.9e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40330.t1 | G7ZWM1 | 87.4 | 215 | 27 | 0 | 1 | 215 | 1 | 215 | 2.0e-97 | 364.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene40330 | 0.819815 | 9.53E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene40330 | 0.817163 | 3.80E-52 | -1.69E-46 |
| MS.gene04919 | MS.gene40330 | 0.812032 | 5.20E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene40330 | 0.816506 | 5.34E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene40330 | 0.820076 | 8.30E-53 | -1.69E-46 |
| MS.gene049283 | MS.gene40330 | 0.837101 | 6.34E-57 | -1.69E-46 |
| MS.gene049368 | MS.gene40330 | 0.812509 | 4.09E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene40330 | 0.807761 | 4.32E-50 | -1.69E-46 |
| MS.gene049786 | MS.gene40330 | 0.803692 | 3.09E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene40330 | 0.819838 | 9.41E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene40330 | 0.819828 | 9.46E-53 | -1.69E-46 |
| MS.gene04998 | MS.gene40330 | 0.824958 | 6.09E-54 | -1.69E-46 |
| MS.gene050439 | MS.gene40330 | 0.807085 | 6.00E-50 | -1.69E-46 |
| MS.gene050556 | MS.gene40330 | 0.808865 | 2.51E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene40330 | 0.810794 | 9.65E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene40330 | 0.802229 | 6.20E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene40330 | 0.807251 | 5.54E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene40330 | 0.812234 | 4.70E-51 | -1.69E-46 |
| MS.gene051490 | MS.gene40330 | 0.829197 | 5.89E-55 | -1.69E-46 |
| MS.gene051676 | MS.gene40330 | 0.821129 | 4.76E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene40330 | 0.841079 | 5.90E-58 | -1.69E-46 |
| MS.gene051832 | MS.gene40330 | 0.80321 | 3.89E-49 | -1.69E-46 |
| MS.gene051852 | MS.gene40330 | 0.800179 | 1.63E-48 | -1.69E-46 |
| MS.gene051975 | MS.gene40330 | 0.829956 | 3.85E-55 | -1.69E-46 |
| MS.gene052016 | MS.gene40330 | 0.856972 | 2.24E-62 | -1.69E-46 |
| MS.gene052052 | MS.gene40330 | 0.804829 | 1.79E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene40330 | 0.830839 | 2.34E-55 | -1.69E-46 |
| MS.gene052307 | MS.gene40330 | 0.822414 | 2.40E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene40330 | 0.83759 | 4.75E-57 | -1.69E-46 |
| MS.gene052493 | MS.gene40330 | 0.821175 | 4.64E-53 | -1.69E-46 |
| MS.gene052533 | MS.gene40330 | 0.834386 | 3.09E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene40330 | 0.804126 | 2.51E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene40330 | 0.817801 | 2.73E-52 | -1.69E-46 |
| MS.gene052681 | MS.gene40330 | 0.824406 | 8.21E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene40330 | 0.824074 | 9.83E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene40330 | 0.802224 | 6.21E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene40330 | 0.8122 | 4.78E-51 | -1.69E-46 |
| MS.gene053620 | MS.gene40330 | 0.802801 | 4.72E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene40330 | 0.811783 | 5.89E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene40330 | 0.845806 | 3.23E-59 | -1.69E-46 |
| MS.gene054222 | MS.gene40330 | 0.808526 | 2.97E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene40330 | 0.81787 | 2.64E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene40330 | 0.848273 | 6.81E-60 | -1.69E-46 |
| MS.gene05458 | MS.gene40330 | 0.825742 | 3.97E-54 | -1.69E-46 |
| MS.gene054892 | MS.gene40330 | 0.863271 | 2.80E-64 | -1.69E-46 |
| MS.gene054893 | MS.gene40330 | 0.86062 | 1.82E-63 | -1.69E-46 |
| MS.gene055313 | MS.gene40330 | 0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene05539 | MS.gene40330 | 0.802702 | 4.95E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene40330 | 0.880294 | 6.18E-70 | -1.69E-46 |
| MS.gene05552 | MS.gene40330 | 0.80241 | 5.68E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene40330 | 0.817011 | 4.11E-52 | -1.69E-46 |
| MS.gene055864 | MS.gene40330 | 0.820482 | 6.70E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene40330 | 0.800486 | 1.41E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene40330 | 0.820444 | 6.84E-53 | -1.69E-46 |
| MS.gene056403 | MS.gene40330 | 0.80709 | 5.99E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene40330 | 0.807025 | 6.18E-50 | -1.69E-46 |
| MS.gene056638 | MS.gene40330 | 0.812052 | 5.15E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene40330 | 0.835379 | 1.74E-56 | -1.69E-46 |
| MS.gene056831 | MS.gene40330 | 0.806022 | 1.01E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene40330 | 0.834263 | 3.32E-56 | -1.69E-46 |
| MS.gene056973 | MS.gene40330 | 0.808497 | 3.01E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene40330 | 0.812942 | 3.29E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene40330 | 0.822287 | 2.57E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene40330 | 0.841244 | 5.34E-58 | -1.69E-46 |
| MS.gene057155 | MS.gene40330 | 0.804241 | 2.37E-49 | -1.69E-46 |
| MS.gene057329 | MS.gene40330 | 0.800369 | 1.49E-48 | -1.69E-46 |
| MS.gene057360 | MS.gene40330 | 0.820871 | 5.45E-53 | -1.69E-46 |
| MS.gene057890 | MS.gene40330 | -0.806865 | 6.68E-50 | -1.69E-46 |
| MS.gene057893 | MS.gene40330 | -0.821768 | 3.39E-53 | -1.69E-46 |
| MS.gene057919 | MS.gene40330 | 0.831691 | 1.45E-55 | -1.69E-46 |
| MS.gene058289 | MS.gene40330 | 0.819048 | 1.43E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene40330 | 0.806767 | 7.01E-50 | -1.69E-46 |
| MS.gene058592 | MS.gene40330 | 0.811731 | 6.04E-51 | -1.69E-46 |
| MS.gene058668 | MS.gene40330 | 0.820901 | 5.37E-53 | -1.69E-46 |
| MS.gene058681 | MS.gene40330 | 0.806991 | 6.29E-50 | -1.69E-46 |
| MS.gene058720 | MS.gene40330 | 0.807282 | 5.46E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene40330 | 0.867866 | 9.98E-66 | -1.69E-46 |
| MS.gene05952 | MS.gene40330 | 0.804793 | 1.82E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene40330 | 0.804078 | 2.57E-49 | -1.69E-46 |
| MS.gene059774 | MS.gene40330 | 0.87136 | 7.25E-67 | -1.69E-46 |
| MS.gene05985 | MS.gene40330 | -0.835855 | 1.32E-56 | -1.69E-46 |
| MS.gene059965 | MS.gene40330 | 0.831141 | 1.98E-55 | -1.69E-46 |
| MS.gene060259 | MS.gene40330 | 0.810404 | 1.17E-50 | -1.69E-46 |
| MS.gene060373 | MS.gene40330 | 0.804463 | 2.13E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene40330 | 0.830564 | 2.74E-55 | -1.69E-46 |
| MS.gene060520 | MS.gene40330 | 0.820085 | 8.26E-53 | -1.69E-46 |
| MS.gene060697 | MS.gene40330 | 0.868205 | 7.76E-66 | -1.69E-46 |
| MS.gene060932 | MS.gene40330 | 0.821299 | 4.35E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene40330 | 0.828186 | 1.03E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene40330 | 0.801146 | 1.03E-48 | -1.69E-46 |
| MS.gene060937 | MS.gene40330 | 0.827976 | 1.16E-54 | -1.69E-46 |
| MS.gene061047 | MS.gene40330 | 0.808161 | 3.55E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene40330 | 0.84862 | 5.46E-60 | -1.69E-46 |
| MS.gene061188 | MS.gene40330 | 0.82951 | 4.95E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40330.t1 | MTR_3g110022 | 98.140 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 3.96e-159 | 438 |
| MS.gene40330.t1 | MTR_3g110022 | 98.788 | 165 | 2 | 0 | 1 | 165 | 1 | 165 | 7.27e-122 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40330.t1 | AT5G11500 | 86.047 | 215 | 30 | 0 | 1 | 215 | 1 | 215 | 2.83e-143 | 398 |
| MS.gene40330.t1 | AT5G11500 | 86.047 | 215 | 29 | 1 | 1 | 215 | 1 | 214 | 3.92e-141 | 393 |
Find 42 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGTGTAATCGCCAGCTTC+AGG | 0.299549 | 3.4:-94873224 | None:intergenic |
| TGACATGAGTGAAGGTTTAT+TGG | 0.304812 | 3.4:+94874309 | MS.gene40330:CDS |
| TCCTGAAGCAATGTCTTTGT+TGG | 0.330602 | 3.4:-94876860 | None:intergenic |
| TGAAATCCTCCTCCACTTCC+TGG | 0.332125 | 3.4:-94876894 | None:intergenic |
| TATTAGTCACCTTTCAAATC+AGG | 0.362648 | 3.4:-94875220 | None:intergenic |
| GTCAAAGCAAATTCAATTCA+AGG | 0.385597 | 3.4:+94874349 | MS.gene40330:CDS |
| GGAAATAGAAAGACTAGAAA+AGG | 0.394170 | 3.4:+94876780 | MS.gene40330:CDS |
| TGGCGATTACACCATCTTCA+TGG | 0.399028 | 3.4:+94873232 | MS.gene40330:CDS |
| TAGGAGCTACAAGGGTTTGA+TGG | 0.418648 | 3.4:+94876819 | MS.gene40330:CDS |
| TTCAGGAAGCAAATCATTCC+AGG | 0.424780 | 3.4:+94876876 | MS.gene40330:CDS |
| TCCAACAAAGACATTGCTTC+AGG | 0.427259 | 3.4:+94876859 | MS.gene40330:CDS |
| CTTCAGCCCATGTTTATGTC+AGG | 0.447158 | 3.4:+94874263 | MS.gene40330:CDS |
| AGATAAATGAGATTGTTAAC+AGG | 0.451759 | 3.4:+94875170 | MS.gene40330:CDS |
| TTCAAAGCACGCCCTGAAGC+TGG | 0.470944 | 3.4:+94873212 | MS.gene40330:CDS |
| AGGAGAAACAATCAGAGCTT+AGG | 0.472437 | 3.4:+94876800 | MS.gene40330:CDS |
| ACGGTTTCATCGAAGACATC+TGG | 0.476438 | 3.4:+94873291 | MS.gene40330:CDS |
| TTTAAAGAAAACTGCTTCGA+TGG | 0.487046 | 3.4:+94874939 | MS.gene40330:CDS |
| CTAGTCTTTCTATTTCCTCA+CGG | 0.488887 | 3.4:-94876774 | None:intergenic |
| TGGTGTAATCGCCAGCTTCA+GGG | 0.491316 | 3.4:-94873223 | None:intergenic |
| AAGCAAATCATTCCAGGAAG+TGG | 0.495884 | 3.4:+94876882 | MS.gene40330:CDS |
| TTGATGTTGTTTACACTCCC+TGG | 0.498834 | 3.4:+94874911 | MS.gene40330:CDS |
| AACGAGGAGCTCATCAAATA+CGG | 0.524376 | 3.4:+94873272 | MS.gene40330:CDS |
| TCGATGGACGTTGGTCAAGT+TGG | 0.525188 | 3.4:+94874955 | MS.gene40330:CDS |
| ATCATTCCAGGAAGTGGAGG+AGG | 0.526776 | 3.4:+94876888 | MS.gene40330:CDS |
| CTTGTCAAGACCCATGAAGA+TGG | 0.559047 | 3.4:-94873243 | None:intergenic |
| GGCGATTACACCATCTTCAT+GGG | 0.565091 | 3.4:+94873233 | MS.gene40330:CDS |
| ATCAGAGCTTAGGAGCTACA+AGG | 0.570116 | 3.4:+94876810 | MS.gene40330:CDS |
| GAAAGAAAACCTGATTTGAA+AGG | 0.573575 | 3.4:+94875211 | MS.gene40330:CDS |
| TGTGCAGCCTGACATAAACA+TGG | 0.601148 | 3.4:-94874270 | None:intergenic |
| ACTATTGATGACATGAGTGA+AGG | 0.607342 | 3.4:+94874301 | MS.gene40330:CDS |
| CAAATCATTCCAGGAAGTGG+AGG | 0.612983 | 3.4:+94876885 | MS.gene40330:CDS |
| CTGAAGACATCTTATCAACA+TGG | 0.615104 | 3.4:-94874246 | None:intergenic |
| CAGGCTAAACAAAACGAAGG+TGG | 0.619805 | 3.4:+94875189 | MS.gene40330:CDS |
| TTAGGTGCGAACTGTGAGAG+TGG | 0.624552 | 3.4:+94875141 | MS.gene40330:intron |
| TCTTGACAAGTTCGAGAACG+AGG | 0.634328 | 3.4:+94873256 | MS.gene40330:CDS |
| TCAGAGCTTAGGAGCTACAA+GGG | 0.638922 | 3.4:+94876811 | MS.gene40330:CDS |
| AAAACTGCTTCGATGGACGT+TGG | 0.639922 | 3.4:+94874946 | MS.gene40330:CDS |
| GTTTATGTCAGGCTGCACAA+AGG | 0.698981 | 3.4:+94874274 | MS.gene40330:CDS |
| CTGTGTGCAGAAGCGCCGTG+AGG | 0.707586 | 3.4:+94876759 | MS.gene40330:intron |
| GTGCAGCCTGACATAAACAT+GGG | 0.715437 | 3.4:-94874269 | None:intergenic |
| TAACAGGCTAAACAAAACGA+AGG | 0.733246 | 3.4:+94875186 | MS.gene40330:CDS |
| CTGCTGCTGAAAGAGCTGAG+AGG | 0.735071 | 3.4:+94875463 | MS.gene40330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTGCAAAAAAAAAAAAAAA+AGG | - | chr3.4:94875054-94875073 | None:intergenic | 15.0% |
| !! | ATGTTAAAAAAAACCTATAA+AGG | - | chr3.4:94875266-94875285 | None:intergenic | 15.0% |
| !! | CATTTAATTAATGATTGAAT+CGG | + | chr3.4:94874210-94874229 | MS.gene40330:intron | 15.0% |
| !!! | CATTTATGATTAGAATTTTA+TGG | + | chr3.4:94875283-94875302 | MS.gene40330:intron | 15.0% |
| !! | AATTTGTCATAAGCTTAAAA+AGG | - | chr3.4:94874679-94874698 | None:intergenic | 20.0% |
| !! | ATAAACAGATAGAAAATACT+AGG | + | chr3.4:94875986-94876005 | MS.gene40330:intron | 20.0% |
| !! | ATTTGTCATAAGCTTAAAAA+GGG | - | chr3.4:94874678-94874697 | None:intergenic | 20.0% |
| !! | CTTGAAAGAATACATAAAAT+TGG | - | chr3.4:94874436-94874455 | None:intergenic | 20.0% |
| !! | GTTCAAATGATATTCTTATT+TGG | + | chr3.4:94874122-94874141 | MS.gene40330:intron | 20.0% |
| !! | TAATTTCAACTTATACAAGA+AGG | - | chr3.4:94874601-94874620 | None:intergenic | 20.0% |
| !! | TACTAAAAGTCATTATAATC+CGG | + | chr3.4:94875931-94875950 | MS.gene40330:intron | 20.0% |
| !!! | ATTTTTACATTAGATTACTC+AGG | + | chr3.4:94875783-94875802 | MS.gene40330:intron | 20.0% |
| !!! | TACCTTTTTTTCTTTATTCA+TGG | + | chr3.4:94874867-94874886 | MS.gene40330:intron | 20.0% |
| !!! | TTTTTTCAAATAAGATGACA+TGG | - | chr3.4:94873775-94873794 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTGCAGTAGTT+GGG | + | chr3.4:94875058-94875077 | MS.gene40330:intron | 20.0% |
| !!! | TTTTTTTTTTTTGCAGTAGT+TGG | + | chr3.4:94875057-94875076 | MS.gene40330:intron | 20.0% |
| ! | AAAAAAAACCTATAAAGGCA+AGG | - | chr3.4:94875261-94875280 | None:intergenic | 25.0% |
| ! | AAAGATATTTCATTGTTAGC+AGG | - | chr3.4:94876343-94876362 | None:intergenic | 25.0% |
| ! | AATTCATGAAATTGGCAAAT+AGG | - | chr3.4:94873335-94873354 | None:intergenic | 25.0% |
| ! | AGATAAATGAGATTGTTAAC+AGG | + | chr3.4:94875170-94875189 | MS.gene40330:CDS | 25.0% |
| ! | ATTTCAGTTGCATTTATAAC+TGG | + | chr3.4:94874465-94874484 | MS.gene40330:intron | 25.0% |
| ! | CAAAATCATAAATCAGACTA+AGG | - | chr3.4:94873408-94873427 | None:intergenic | 25.0% |
| ! | GAAGAAGAAATTCATGAAAT+TGG | - | chr3.4:94873343-94873362 | None:intergenic | 25.0% |
| ! | TAAGTTAACAGTATATCATG+AGG | - | chr3.4:94875706-94875725 | None:intergenic | 25.0% |
| ! | TATATTGTGCTTAGATACTT+TGG | - | chr3.4:94875554-94875573 | None:intergenic | 25.0% |
| ! | TATCTGTTTATTTCAGCATT+GGG | - | chr3.4:94875977-94875996 | None:intergenic | 25.0% |
| ! | TCACAAATATAACATCCTAA+AGG | - | chr3.4:94876581-94876600 | None:intergenic | 25.0% |
| ! | TGCCATGAATAAAGAAAAAA+AGG | - | chr3.4:94874872-94874891 | None:intergenic | 25.0% |
| ! | TTATGAGTTTGACAATGATA+TGG | - | chr3.4:94876040-94876059 | None:intergenic | 25.0% |
| ! | TTGATTGAATTTGTAGTGAT+TGG | - | chr3.4:94873845-94873864 | None:intergenic | 25.0% |
| ! | TTTATAACTGGAAATCTGAA+AGG | + | chr3.4:94874477-94874496 | MS.gene40330:intron | 25.0% |
| !! | AGATTTAGAAATTTTGCATC+AGG | - | chr3.4:94874084-94874103 | None:intergenic | 25.0% |
| !! | ATTTAGAAATTTTGCATCAG+GGG | - | chr3.4:94874082-94874101 | None:intergenic | 25.0% |
| !! | GATTTAGAAATTTTGCATCA+GGG | - | chr3.4:94874083-94874102 | None:intergenic | 25.0% |
| !! | GCTTATGACAAATTTTTCTT+AGG | + | chr3.4:94874685-94874704 | MS.gene40330:intron | 25.0% |
| !! | TCTTTAGAAACTAGGATATT+GGG | + | chr3.4:94873473-94873492 | MS.gene40330:intron | 25.0% |
| !! | TTAGAATTTTATGGATGAAG+AGG | + | chr3.4:94875292-94875311 | MS.gene40330:intron | 25.0% |
| !! | TTTTATTAGATCTTGACCAA+TGG | + | chr3.4:94876076-94876095 | MS.gene40330:intron | 25.0% |
| !!! | GAAGATATTTCATTTTTAGC+AGG | - | chr3.4:94876655-94876674 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTATTCATGGCA+GGG | + | chr3.4:94874872-94874891 | MS.gene40330:intron | 25.0% |
| !!! | TTTTTTTCTTTATTCATGGC+AGG | + | chr3.4:94874871-94874890 | MS.gene40330:intron | 25.0% |
| !!! | TTTTTTTTTTGCAGTAGTTG+GGG | + | chr3.4:94875059-94875078 | MS.gene40330:intron | 25.0% |
| AACAACTAGAATAAGAACAC+CGG | - | chr3.4:94875953-94875972 | None:intergenic | 30.0% | |
| AATAATACCATGGCTATGAT+TGG | + | chr3.4:94873582-94873601 | MS.gene40330:intron | 30.0% | |
| ACAATACATTGTTGTATACC+TGG | - | chr3.4:94875656-94875675 | None:intergenic | 30.0% | |
| ATCACTAACAGCACAAAATT+AGG | - | chr3.4:94874847-94874866 | None:intergenic | 30.0% | |
| ATGTATTGTCACATACATCA+TGG | + | chr3.4:94875667-94875686 | MS.gene40330:intron | 30.0% | |
| CACGTAAACATAGTTATGTT+TGG | - | chr3.4:94873945-94873964 | None:intergenic | 30.0% | |
| CACTTTAGACTATCATTATC+TGG | + | chr3.4:94875106-94875125 | MS.gene40330:intron | 30.0% | |
| CTATCTGTTTATTTCAGCAT+TGG | - | chr3.4:94875978-94875997 | None:intergenic | 30.0% | |
| GAAGCTATTGTTCAAAAAAC+TGG | - | chr3.4:94874576-94874595 | None:intergenic | 30.0% | |
| GGAAATAGAAAGACTAGAAA+AGG | + | chr3.4:94876780-94876799 | MS.gene40330:CDS | 30.0% | |
| GTAGTGATTGGTAAAATTAG+CGG | - | chr3.4:94873833-94873852 | None:intergenic | 30.0% | |
| GTCAAAGCAAATTCAATTCA+AGG | + | chr3.4:94874349-94874368 | MS.gene40330:CDS | 30.0% | |
| TAAAACCTAGTATGAGAACT+AGG | - | chr3.4:94874775-94874794 | None:intergenic | 30.0% | |
| TACAATAGCAGATAGTTGAT+AGG | - | chr3.4:94873920-94873939 | None:intergenic | 30.0% | |
| TATTAGTCACCTTTCAAATC+AGG | - | chr3.4:94875223-94875242 | None:intergenic | 30.0% | |
| TATTCTTTCCTTGCCTTTAT+AGG | + | chr3.4:94875250-94875269 | MS.gene40330:intron | 30.0% | |
| TGAAATTGGCAAATAGGAAA+TGG | - | chr3.4:94873329-94873348 | None:intergenic | 30.0% | |
| TGAACTTTGTTGAGAATTTG+AGG | + | chr3.4:94876598-94876617 | MS.gene40330:intron | 30.0% | |
| TGGGATTAGACTAATTACTT+TGG | + | chr3.4:94873492-94873511 | MS.gene40330:intron | 30.0% | |
| TTTAAAGAAAACTGCTTCGA+TGG | + | chr3.4:94874939-94874958 | MS.gene40330:CDS | 30.0% | |
| TTTGTTGAGAATTTGAGGAT+CGG | + | chr3.4:94876603-94876622 | MS.gene40330:intron | 30.0% | |
| ! | AGTTTTCTTTAAATTGGACC+AGG | - | chr3.4:94874932-94874951 | None:intergenic | 30.0% |
| ! | CGAAGCAGTTTTCTTTAAAT+TGG | - | chr3.4:94874938-94874957 | None:intergenic | 30.0% |
| ! | CGGTTATTTCAATAATACCA+TGG | + | chr3.4:94873572-94873591 | MS.gene40330:intron | 30.0% |
| ! | GAAAGAAAACCTGATTTGAA+AGG | + | chr3.4:94875211-94875230 | MS.gene40330:CDS | 30.0% |
| ! | GTCTTTAGAAACTAGGATAT+TGG | + | chr3.4:94873472-94873491 | MS.gene40330:intron | 30.0% |
| ! | GTTTTCTTTAAATTGGACCA+GGG | - | chr3.4:94874931-94874950 | None:intergenic | 30.0% |
| ! | TGGTTTTCACAACTCAAAAA+TGG | + | chr3.4:94874975-94874994 | MS.gene40330:CDS | 30.0% |
| ! | TTTCAGTGTCTTTAGAAACT+AGG | + | chr3.4:94873465-94873484 | MS.gene40330:intron | 30.0% |
| ! | TTTGTATCTTGTTGTCCTTT+AGG | + | chr3.4:94876563-94876582 | MS.gene40330:intron | 30.0% |
| !! | ATTTAAGTTTTCCTATGTCC+TGG | + | chr3.4:94876202-94876221 | MS.gene40330:intron | 30.0% |
| !! | TTACTTTGGTGATGTTTATG+TGG | + | chr3.4:94873506-94873525 | MS.gene40330:intron | 30.0% |
| !! | TTTCCATCTTGTTGTTCTTT+AGG | + | chr3.4:94876251-94876270 | MS.gene40330:intron | 30.0% |
| !!! | AAATGGTCTGTTTTTACACT+TGG | + | chr3.4:94874992-94875011 | MS.gene40330:intron | 30.0% |
| AACAGCACAAAATTAGGCTA+TGG | - | chr3.4:94874841-94874860 | None:intergenic | 35.0% | |
| ACCGAAAATTCCATATTGCA+GGG | - | chr3.4:94873992-94874011 | None:intergenic | 35.0% | |
| ACTAAATGCCAATTCAAACC+TGG | + | chr3.4:94874749-94874768 | MS.gene40330:intron | 35.0% | |
| ACTCGTGAGAGAAACAAAAA+TGG | - | chr3.4:94873665-94873684 | None:intergenic | 35.0% | |
| ATCGCGATTAATTATTCCTC+TGG | + | chr3.4:94874378-94874397 | MS.gene40330:intron | 35.0% | |
| ATCTAGCCATTTAGTCATTG+TGG | + | chr3.4:94875345-94875364 | MS.gene40330:intron | 35.0% | |
| CATCCTAAAGAACAACAAGA+TGG | - | chr3.4:94876257-94876276 | None:intergenic | 35.0% | |
| CTGAAGACATCTTATCAACA+TGG | - | chr3.4:94874249-94874268 | None:intergenic | 35.0% | |
| GAATACATAAAATTGGCCCT+TGG | - | chr3.4:94874429-94874448 | None:intergenic | 35.0% | |
| GACACTGAAACAAAACGATT+TGG | - | chr3.4:94873455-94873474 | None:intergenic | 35.0% | |
| GAGCTTATAAGCTCAAAATC+TGG | - | chr3.4:94873613-94873632 | None:intergenic | 35.0% | |
| GGCAAATAGGAAATGGAATT+CGG | - | chr3.4:94873322-94873341 | None:intergenic | 35.0% | |
| GTGGTGTCTAATGTACAATA+TGG | + | chr3.4:94875364-94875383 | MS.gene40330:intron | 35.0% | |
| GTTGTGATTCAATGATTCTG+CGG | + | chr3.4:94873552-94873571 | MS.gene40330:intron | 35.0% | |
| TAACAGGCTAAACAAAACGA+AGG | + | chr3.4:94875186-94875205 | MS.gene40330:CDS | 35.0% | |
| TAGACACCACAATGACTAAA+TGG | - | chr3.4:94875354-94875373 | None:intergenic | 35.0% | |
| TCAGCTGAGTCGAATTAAAT+TGG | - | chr3.4:94875393-94875412 | None:intergenic | 35.0% | |
| TGACATGAGTGAAGGTTTAT+TGG | + | chr3.4:94874309-94874328 | MS.gene40330:CDS | 35.0% | |
| TTGTTGAGAATTTGAGGATC+GGG | + | chr3.4:94876604-94876623 | MS.gene40330:intron | 35.0% | |
| ! | ACTATTGATGACATGAGTGA+AGG | + | chr3.4:94874301-94874320 | MS.gene40330:CDS | 35.0% |
| ! | AGCTGATCTTGTTATCTATG+CGG | + | chr3.4:94875407-94875426 | MS.gene40330:intron | 35.0% |
| ! | AGTTTTTAACCCCTGCAATA+TGG | + | chr3.4:94873979-94873998 | MS.gene40330:intron | 35.0% |
| ! | CTAGTCTTTCTATTTCCTCA+CGG | - | chr3.4:94876777-94876796 | None:intergenic | 35.0% |
| ! | TGATTGAATCGGTCTTTTGT+AGG | + | chr3.4:94874221-94874240 | MS.gene40330:intron | 35.0% |
| ! | TTATCTTTTCCTCTGTCCTA+AGG | + | chr3.4:94876516-94876535 | MS.gene40330:intron | 35.0% |
| !! | GTTGATAGGCTAGCTTATAA+CGG | - | chr3.4:94873906-94873925 | None:intergenic | 35.0% |
| !!! | ATCTGGCTTTTGTGCATTTT+AGG | + | chr3.4:94875123-94875142 | MS.gene40330:intron | 35.0% |
| !!! | CAGGCTAGTGATTATTTTAG+AGG | + | chr3.4:94875802-94875821 | MS.gene40330:intron | 35.0% |
| AAATCTGTACACTTGCATCC+AGG | + | chr3.4:94875635-94875654 | MS.gene40330:intron | 40.0% | |
| AACGAGGAGCTCATCAAATA+CGG | + | chr3.4:94873272-94873291 | MS.gene40330:CDS | 40.0% | |
| AAGAAGACACCATGAACCTT+AGG | - | chr3.4:94876630-94876649 | None:intergenic | 40.0% | |
| AAGCAAATCATTCCAGGAAG+TGG | + | chr3.4:94876882-94876901 | MS.gene40330:CDS | 40.0% | |
| AGGAGAAACAATCAGAGCTT+AGG | + | chr3.4:94876800-94876819 | MS.gene40330:CDS | 40.0% | |
| CCGAAAATTCCATATTGCAG+GGG | - | chr3.4:94873991-94874010 | None:intergenic | 40.0% | |
| GACCGAAAATTCCATATTGC+AGG | - | chr3.4:94873993-94874012 | None:intergenic | 40.0% | |
| GCACAAAATTAGGCTATGGA+AGG | - | chr3.4:94874837-94874856 | None:intergenic | 40.0% | |
| GGTTGTGCTTCGAAACAAAT+TGG | + | chr3.4:94876097-94876116 | MS.gene40330:intron | 40.0% | |
| TCCAACAAAGACATTGCTTC+AGG | + | chr3.4:94876859-94876878 | MS.gene40330:CDS | 40.0% | |
| TCCTGAAGCAATGTCTTTGT+TGG | - | chr3.4:94876863-94876882 | None:intergenic | 40.0% | |
| TCTTCCAGTATAGATCTCGA+GGG | + | chr3.4:94874030-94874049 | MS.gene40330:intron | 40.0% | |
| TGTTTATGTGGCTCATGGTT+AGG | + | chr3.4:94873518-94873537 | MS.gene40330:intron | 40.0% | |
| TTCAGGAAGCAAATCATTCC+AGG | + | chr3.4:94876876-94876895 | MS.gene40330:CDS | 40.0% | |
| TTGTTTCGAAGCACAACCAT+TGG | - | chr3.4:94876095-94876114 | None:intergenic | 40.0% | |
| ! | CCCCTGCAATATGGAATTTT+CGG | + | chr3.4:94873988-94874007 | MS.gene40330:intron | 40.0% |
| ! | GCTGATCTTGTTATCTATGC+GGG | + | chr3.4:94875408-94875427 | MS.gene40330:intron | 40.0% |
| ! | TTGATGTTGTTTACACTCCC+TGG | + | chr3.4:94874911-94874930 | MS.gene40330:CDS | 40.0% |
| !! | TCTGAAAGGCTAAGAGCATT+TGG | + | chr3.4:94874491-94874510 | MS.gene40330:intron | 40.0% |
| !!! | GAATTTTAGAATCCAGCCCA+AGG | + | chr3.4:94876299-94876318 | MS.gene40330:intron | 40.0% |
| !!! | TTTTTTTGCAGTAGTTGGGG+TGG | + | chr3.4:94875062-94875081 | MS.gene40330:intron | 40.0% |
| AAAACTGCTTCGATGGACGT+TGG | + | chr3.4:94874946-94874965 | MS.gene40330:CDS | 45.0% | |
| AAAATTGGCCCTTGGTCCTT+GGG | - | chr3.4:94874421-94874440 | None:intergenic | 45.0% | |
| AAAGAAGACACCGTGAACCT+TGG | - | chr3.4:94876319-94876338 | None:intergenic | 45.0% | |
| AAGAAGACACCGTGAACCTT+GGG | - | chr3.4:94876318-94876337 | None:intergenic | 45.0% | |
| AAGTACTCAAGCAGTGCCTT+AGG | - | chr3.4:94876535-94876554 | None:intergenic | 45.0% | |
| ACGGTTTCATCGAAGACATC+TGG | + | chr3.4:94873291-94873310 | MS.gene40330:CDS | 45.0% | |
| ATCAGAGCTTAGGAGCTACA+AGG | + | chr3.4:94876810-94876829 | MS.gene40330:CDS | 45.0% | |
| CAAATCATTCCAGGAAGTGG+AGG | + | chr3.4:94876885-94876904 | MS.gene40330:CDS | 45.0% | |
| CAGGCTAAACAAAACGAAGG+TGG | + | chr3.4:94875189-94875208 | MS.gene40330:CDS | 45.0% | |
| CATGGCAGGTAAAAAGACAG+CGG | - | chr3.4:94876146-94876165 | None:intergenic | 45.0% | |
| CTCTTCCAGTATAGATCTCG+AGG | + | chr3.4:94874029-94874048 | MS.gene40330:intron | 45.0% | |
| CTGCTATGTTGCATTCTCCT+CGG | + | chr3.4:94876469-94876488 | MS.gene40330:intron | 45.0% | |
| CTTCAGCCCATGTTTATGTC+AGG | + | chr3.4:94874263-94874282 | MS.gene40330:CDS | 45.0% | |
| CTTCCAGTATAGATCTCGAG+GGG | + | chr3.4:94874031-94874050 | MS.gene40330:intron | 45.0% | |
| CTTGTCAAGACCCATGAAGA+TGG | - | chr3.4:94873246-94873265 | None:intergenic | 45.0% | |
| GAACTAGGCCAGGTTTGAAT+TGG | - | chr3.4:94874760-94874779 | None:intergenic | 45.0% | |
| GCCATGTTGCATTCTCTTCA+GGG | + | chr3.4:94876160-94876179 | MS.gene40330:intron | 45.0% | |
| GGCGATTACACCATCTTCAT+GGG | + | chr3.4:94873233-94873252 | MS.gene40330:CDS | 45.0% | |
| GGTGATGTTTATGTGGCTCA+TGG | + | chr3.4:94873513-94873532 | MS.gene40330:intron | 45.0% | |
| GTGCAGCCTGACATAAACAT+GGG | - | chr3.4:94874272-94874291 | None:intergenic | 45.0% | |
| GTTTATGTCAGGCTGCACAA+AGG | + | chr3.4:94874274-94874293 | MS.gene40330:CDS | 45.0% | |
| TAAAATTGGCCCTTGGTCCT+TGG | - | chr3.4:94874422-94874441 | None:intergenic | 45.0% | |
| TAGGAGCTACAAGGGTTTGA+TGG | + | chr3.4:94876819-94876838 | MS.gene40330:CDS | 45.0% | |
| TAGTAGACAATTATGCCCCG+AGG | - | chr3.4:94876489-94876508 | None:intergenic | 45.0% | |
| TCAGAGCTTAGGAGCTACAA+GGG | + | chr3.4:94876811-94876830 | MS.gene40330:CDS | 45.0% | |
| TCTTGACAAGTTCGAGAACG+AGG | + | chr3.4:94873256-94873275 | MS.gene40330:CDS | 45.0% | |
| TGAAGAGAATGCAACATGGC+AGG | - | chr3.4:94876160-94876179 | None:intergenic | 45.0% | |
| TGCCATGTTGCATTCTCTTC+AGG | + | chr3.4:94876159-94876178 | MS.gene40330:intron | 45.0% | |
| TGCTATGTTGCATTCTCCTC+GGG | + | chr3.4:94876470-94876489 | MS.gene40330:intron | 45.0% | |
| TGGCGATTACACCATCTTCA+TGG | + | chr3.4:94873232-94873251 | MS.gene40330:CDS | 45.0% | |
| TGTGCAGCCTGACATAAACA+TGG | - | chr3.4:94874273-94874292 | None:intergenic | 45.0% | |
| TTAGTTGACCCAAGGACCAA+GGG | + | chr3.4:94874410-94874429 | MS.gene40330:intron | 45.0% | |
| AAGAACTCAAGCAGTGCACC+AGG | - | chr3.4:94876223-94876242 | None:intergenic | 50.0% | |
| AAGCCCCTCGAGATCTATAC+TGG | - | chr3.4:94874037-94874056 | None:intergenic | 50.0% | |
| AGAATCCAGCCCAAGGTTCA+CGG | + | chr3.4:94876306-94876325 | MS.gene40330:intron | 50.0% | |
| ATCATTCCAGGAAGTGGAGG+AGG | + | chr3.4:94876888-94876907 | MS.gene40330:CDS | 50.0% | |
| ATGGTGTAATCGCCAGCTTC+AGG | - | chr3.4:94873227-94873246 | None:intergenic | 50.0% | |
| CAACTAAGCGGATAGACCAG+AGG | - | chr3.4:94874397-94874416 | None:intergenic | 50.0% | |
| CCTAGTATGAGAACTAGGCC+AGG | - | chr3.4:94874770-94874789 | None:intergenic | 50.0% | |
| CTATCCGCTTAGTTGACCCA+AGG | + | chr3.4:94874402-94874421 | MS.gene40330:intron | 50.0% | |
| CTTAGTTGACCCAAGGACCA+AGG | + | chr3.4:94874409-94874428 | MS.gene40330:intron | 50.0% | |
| GAATTTGAGGATCGGGCCTA+AGG | + | chr3.4:94876611-94876630 | MS.gene40330:intron | 50.0% | |
| GCCCTGAAGAGAATGCAACA+TGG | - | chr3.4:94876164-94876183 | None:intergenic | 50.0% | |
| GCTATGTTGCATTCTCCTCG+GGG | + | chr3.4:94876471-94876490 | MS.gene40330:intron | 50.0% | |
| GGCATTGCCAATCATAGCCA+TGG | - | chr3.4:94873592-94873611 | None:intergenic | 50.0% | |
| TCGATGGACGTTGGTCAAGT+TGG | + | chr3.4:94874955-94874974 | MS.gene40330:CDS | 50.0% | |
| TGAAATCCTCCTCCACTTCC+TGG | - | chr3.4:94876897-94876916 | None:intergenic | 50.0% | |
| TGGTCCTTGGGTCAACTAAG+CGG | - | chr3.4:94874409-94874428 | None:intergenic | 50.0% | |
| TGGTGTAATCGCCAGCTTCA+GGG | - | chr3.4:94873226-94873245 | None:intergenic | 50.0% | |
| TTAGGTGCGAACTGTGAGAG+TGG | + | chr3.4:94875141-94875160 | MS.gene40330:intron | 50.0% | |
| ! | CCTGGCCTAGTTCTCATACT+AGG | + | chr3.4:94874767-94874786 | MS.gene40330:intron | 50.0% |
| AGGATCGGGCCTAAGGTTCA+TGG | + | chr3.4:94876618-94876637 | MS.gene40330:intron | 55.0% | |
| CAAGCAGTGCACCAGGACAT+AGG | - | chr3.4:94876216-94876235 | None:intergenic | 55.0% | |
| CAAGCAGTGCCTTAGGACAG+AGG | - | chr3.4:94876528-94876547 | None:intergenic | 55.0% | |
| CTGCTGCTGAAAGAGCTGAG+AGG | + | chr3.4:94875463-94875482 | MS.gene40330:CDS | 55.0% | |
| TTCAAAGCACGCCCTGAAGC+TGG | + | chr3.4:94873212-94873231 | MS.gene40330:CDS | 55.0% | |
| TTGCAGTAGTTGGGGTGGCT+GGG | + | chr3.4:94875067-94875086 | MS.gene40330:intron | 55.0% | |
| TTTGCAGTAGTTGGGGTGGC+TGG | + | chr3.4:94875066-94875085 | MS.gene40330:intron | 55.0% | |
| AGACACCGTGAACCTTGGGC+TGG | - | chr3.4:94876314-94876333 | None:intergenic | 60.0% | |
| ! | CTCGAGGGGCTTGCTCTTTC+TGG | + | chr3.4:94874045-94874064 | MS.gene40330:intron | 60.0% |
| !! | CTGTGTGCAGAAGCGCCGTG+AGG | + | chr3.4:94876759-94876778 | MS.gene40330:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94873200 | 94876921 | 94873200 | ID=MS.gene40330 |
| chr3.4 | mRNA | 94873200 | 94876921 | 94873200 | ID=MS.gene40330.t1;Parent=MS.gene40330 |
| chr3.4 | exon | 94873200 | 94873312 | 94873200 | ID=MS.gene40330.t1.exon1;Parent=MS.gene40330.t1 |
| chr3.4 | CDS | 94873200 | 94873312 | 94873200 | ID=cds.MS.gene40330.t1;Parent=MS.gene40330.t1 |
| chr3.4 | exon | 94874243 | 94874370 | 94874243 | ID=MS.gene40330.t1.exon2;Parent=MS.gene40330.t1 |
| chr3.4 | CDS | 94874243 | 94874370 | 94874243 | ID=cds.MS.gene40330.t1;Parent=MS.gene40330.t1 |
| chr3.4 | exon | 94874893 | 94874996 | 94874893 | ID=MS.gene40330.t1.exon3;Parent=MS.gene40330.t1 |
| chr3.4 | CDS | 94874893 | 94874996 | 94874893 | ID=cds.MS.gene40330.t1;Parent=MS.gene40330.t1 |
| chr3.4 | exon | 94875145 | 94875232 | 94875145 | ID=MS.gene40330.t1.exon4;Parent=MS.gene40330.t1 |
| chr3.4 | CDS | 94875145 | 94875232 | 94875145 | ID=cds.MS.gene40330.t1;Parent=MS.gene40330.t1 |
| chr3.4 | exon | 94875445 | 94875506 | 94875445 | ID=MS.gene40330.t1.exon5;Parent=MS.gene40330.t1 |
| chr3.4 | CDS | 94875445 | 94875506 | 94875445 | ID=cds.MS.gene40330.t1;Parent=MS.gene40330.t1 |
| chr3.4 | exon | 94876769 | 94876921 | 94876769 | ID=MS.gene40330.t1.exon6;Parent=MS.gene40330.t1 |
| chr3.4 | CDS | 94876769 | 94876921 | 94876769 | ID=cds.MS.gene40330.t1;Parent=MS.gene40330.t1 |
| Gene Sequence |
| Protein sequence |
