Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52996.t1 | XP_003590791.1 | 86.2 | 383 | 52 | 1 | 1 | 382 | 1 | 383 | 1.00E-142 | 516.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52996.t1 | Q84WL6 | 42.7 | 337 | 147 | 7 | 7 | 333 | 2 | 302 | 9.0e-47 | 189.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52996.t1 | G7I3Y8 | 86.2 | 383 | 52 | 1 | 1 | 382 | 1 | 383 | 7.4e-143 | 516.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049227 | MS.gene52996 | 0.821922 | 3.12E-53 | -1.69E-46 |
| MS.gene049261 | MS.gene52996 | 0.805942 | 1.05E-49 | -1.69E-46 |
| MS.gene049418 | MS.gene52996 | 0.831063 | 2.06E-55 | -1.69E-46 |
| MS.gene049596 | MS.gene52996 | 0.814904 | 1.21E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene52996 | 0.823778 | 1.15E-53 | -1.69E-46 |
| MS.gene04985 | MS.gene52996 | 0.820365 | 7.13E-53 | -1.69E-46 |
| MS.gene049989 | MS.gene52996 | 0.821312 | 4.32E-53 | -1.69E-46 |
| MS.gene050071 | MS.gene52996 | 0.842012 | 3.35E-58 | -1.69E-46 |
| MS.gene050297 | MS.gene52996 | 0.879014 | 1.76E-69 | -1.69E-46 |
| MS.gene050310 | MS.gene52996 | 0.835617 | 1.51E-56 | -1.69E-46 |
| MS.gene050648 | MS.gene52996 | 0.81161 | 6.42E-51 | -1.69E-46 |
| MS.gene051018 | MS.gene52996 | 0.801853 | 7.40E-49 | -1.69E-46 |
| MS.gene051067 | MS.gene52996 | 0.835373 | 1.74E-56 | -1.69E-46 |
| MS.gene051263 | MS.gene52996 | 0.801938 | 7.11E-49 | -1.69E-46 |
| MS.gene051478 | MS.gene52996 | 0.804747 | 1.86E-49 | -1.69E-46 |
| MS.gene051648 | MS.gene52996 | 0.867803 | 1.05E-65 | -1.69E-46 |
| MS.gene051664 | MS.gene52996 | 0.803775 | 2.97E-49 | -1.69E-46 |
| MS.gene052143 | MS.gene52996 | 0.818971 | 1.48E-52 | -1.69E-46 |
| MS.gene052150 | MS.gene52996 | 0.82394 | 1.06E-53 | -1.69E-46 |
| MS.gene052151 | MS.gene52996 | 0.826394 | 2.78E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene52996 | 0.826278 | 2.96E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene52996 | 0.830641 | 2.62E-55 | -1.69E-46 |
| MS.gene053536 | MS.gene52996 | 0.868532 | 6.09E-66 | -1.69E-46 |
| MS.gene053538 | MS.gene52996 | 0.871769 | 5.31E-67 | -1.69E-46 |
| MS.gene054584 | MS.gene52996 | 0.811078 | 8.38E-51 | -1.69E-46 |
| MS.gene054585 | MS.gene52996 | 0.821553 | 3.80E-53 | -1.69E-46 |
| MS.gene054643 | MS.gene52996 | 0.850009 | 2.24E-60 | -1.69E-46 |
| MS.gene054999 | MS.gene52996 | 0.860802 | 1.60E-63 | -1.69E-46 |
| MS.gene055251 | MS.gene52996 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene055331 | MS.gene52996 | 0.836644 | 8.29E-57 | -1.69E-46 |
| MS.gene055411 | MS.gene52996 | 0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene52996 | 0.834476 | 2.93E-56 | -1.69E-46 |
| MS.gene055764 | MS.gene52996 | 0.871157 | 8.46E-67 | -1.69E-46 |
| MS.gene056169 | MS.gene52996 | 0.808522 | 2.97E-50 | -1.69E-46 |
| MS.gene056266 | MS.gene52996 | -0.804314 | 2.29E-49 | -1.69E-46 |
| MS.gene057004 | MS.gene52996 | 0.802731 | 4.88E-49 | -1.69E-46 |
| MS.gene057082 | MS.gene52996 | 0.834443 | 2.99E-56 | -1.69E-46 |
| MS.gene058015 | MS.gene52996 | 0.813478 | 2.51E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene52996 | 0.815373 | 9.56E-52 | -1.69E-46 |
| MS.gene058198 | MS.gene52996 | 0.809311 | 2.01E-50 | -1.69E-46 |
| MS.gene058210 | MS.gene52996 | 0.840478 | 8.49E-58 | -1.69E-46 |
| MS.gene058818 | MS.gene52996 | 0.819373 | 1.20E-52 | -1.69E-46 |
| MS.gene05894 | MS.gene52996 | 0.844353 | 7.97E-59 | -1.69E-46 |
| MS.gene059300 | MS.gene52996 | 0.82927 | 5.65E-55 | -1.69E-46 |
| MS.gene059424 | MS.gene52996 | 0.870952 | 9.89E-67 | -1.69E-46 |
| MS.gene05970 | MS.gene52996 | 0.810461 | 1.14E-50 | -1.69E-46 |
| MS.gene05971 | MS.gene52996 | 0.810326 | 1.22E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene52996 | 0.87007 | 1.93E-66 | -1.69E-46 |
| MS.gene060283 | MS.gene52996 | 0.819174 | 1.33E-52 | -1.69E-46 |
| MS.gene06057 | MS.gene52996 | 0.865326 | 6.41E-65 | -1.69E-46 |
| MS.gene061100 | MS.gene52996 | 0.809926 | 1.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52996.t1 | MTR_1g075310 | 93.995 | 383 | 22 | 1 | 1 | 382 | 1 | 383 | 0.0 | 734 |
| MS.gene52996.t1 | MTR_1g080690 | 43.023 | 258 | 133 | 6 | 61 | 313 | 45 | 293 | 1.25e-44 | 158 |
| MS.gene52996.t1 | MTR_7g115310 | 59.559 | 136 | 51 | 1 | 179 | 314 | 178 | 309 | 2.43e-32 | 129 |
| MS.gene52996.t1 | MTR_7g106750 | 54.198 | 131 | 54 | 3 | 185 | 315 | 213 | 337 | 6.17e-31 | 122 |
| MS.gene52996.t1 | MTR_1g012530 | 53.913 | 115 | 48 | 2 | 217 | 331 | 229 | 338 | 1.29e-29 | 119 |
| MS.gene52996.t1 | MTR_3g107050 | 60.870 | 92 | 36 | 0 | 217 | 308 | 212 | 303 | 1.02e-28 | 116 |
| MS.gene52996.t1 | MTR_1g055085 | 60.194 | 103 | 39 | 2 | 213 | 315 | 231 | 331 | 1.31e-27 | 113 |
| MS.gene52996.t1 | MTR_1g012530 | 58.667 | 75 | 31 | 0 | 217 | 291 | 229 | 303 | 4.88e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52996.t1 | AT3G23090 | 49.701 | 334 | 128 | 8 | 7 | 333 | 2 | 302 | 7.79e-83 | 256 |
| MS.gene52996.t1 | AT3G23090 | 49.701 | 334 | 128 | 8 | 7 | 333 | 38 | 338 | 1.80e-82 | 256 |
| MS.gene52996.t1 | AT3G23090 | 49.401 | 334 | 129 | 8 | 7 | 333 | 3 | 303 | 5.80e-82 | 254 |
| MS.gene52996.t1 | AT3G23090 | 49.112 | 338 | 128 | 9 | 7 | 333 | 2 | 306 | 3.39e-81 | 252 |
| MS.gene52996.t1 | AT3G23090 | 49.112 | 338 | 128 | 9 | 7 | 333 | 38 | 342 | 6.76e-81 | 253 |
| MS.gene52996.t1 | AT1G54460 | 48.551 | 276 | 106 | 11 | 63 | 335 | 40 | 282 | 3.17e-61 | 201 |
| MS.gene52996.t1 | AT3G04630 | 60.993 | 141 | 52 | 2 | 168 | 305 | 82 | 222 | 3.01e-50 | 171 |
| MS.gene52996.t1 | AT3G04630 | 60.993 | 141 | 52 | 2 | 168 | 305 | 78 | 218 | 3.07e-50 | 171 |
| MS.gene52996.t1 | AT3G04630 | 62.222 | 135 | 49 | 1 | 173 | 305 | 83 | 217 | 5.02e-50 | 170 |
| MS.gene52996.t1 | AT5G28646 | 54.194 | 155 | 62 | 3 | 162 | 314 | 40 | 187 | 3.77e-41 | 144 |
| MS.gene52996.t1 | AT5G28646 | 54.194 | 155 | 62 | 3 | 162 | 314 | 40 | 187 | 3.77e-41 | 144 |
| MS.gene52996.t1 | AT5G28646 | 58.647 | 133 | 49 | 2 | 184 | 314 | 55 | 183 | 1.61e-40 | 142 |
| MS.gene52996.t1 | AT2G35880 | 57.143 | 133 | 54 | 2 | 178 | 310 | 210 | 339 | 2.88e-33 | 129 |
| MS.gene52996.t1 | AT2G35880 | 57.143 | 133 | 54 | 2 | 178 | 310 | 210 | 339 | 2.88e-33 | 129 |
| MS.gene52996.t1 | AT2G35880 | 57.143 | 133 | 54 | 2 | 178 | 310 | 210 | 339 | 2.88e-33 | 129 |
| MS.gene52996.t1 | AT4G32330 | 54.098 | 122 | 56 | 0 | 189 | 310 | 180 | 301 | 7.74e-31 | 122 |
| MS.gene52996.t1 | AT4G32330 | 54.098 | 122 | 56 | 0 | 189 | 310 | 180 | 301 | 7.74e-31 | 122 |
| MS.gene52996.t1 | AT4G32330 | 54.098 | 122 | 56 | 0 | 189 | 310 | 180 | 301 | 7.74e-31 | 122 |
| MS.gene52996.t1 | AT4G32330 | 61.702 | 94 | 36 | 0 | 217 | 310 | 207 | 300 | 1.80e-30 | 121 |
| MS.gene52996.t1 | AT2G25480 | 58.416 | 101 | 41 | 1 | 217 | 317 | 184 | 283 | 1.78e-27 | 112 |
| MS.gene52996.t1 | AT2G25480 | 58.416 | 101 | 41 | 1 | 217 | 317 | 183 | 282 | 1.83e-27 | 112 |
| MS.gene52996.t1 | AT1G70950 | 50.617 | 81 | 40 | 0 | 218 | 298 | 330 | 410 | 4.01e-16 | 80.1 |
Find 76 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCATGTTCAGTTGCTTC+TGG | 0.221500 | 1.1:-56391752 | MS.gene52996:CDS |
| CTCTTTCGCCGACCCAGTTT+TGG | 0.233302 | 1.1:+56390726 | None:intergenic |
| TCTGAATGTTTCTTGTTATC+AGG | 0.235516 | 1.1:+56391782 | None:intergenic |
| GATGGAATTTCGCACAATTC+AGG | 0.294711 | 1.1:-56392389 | MS.gene52996:CDS |
| ACGTGCAAAATCTCCAAAAC+TGG | 0.305226 | 1.1:-56390739 | MS.gene52996:CDS |
| ATTAATTTCTTCAATTAATT+CGG | 0.315412 | 1.1:+56390542 | None:intergenic |
| CTTTCAGTTGCTAGGGAAAA+TGG | 0.316077 | 1.1:+56392086 | None:intergenic |
| ACTCCTCCTCAACTGTTTGA+TGG | 0.328938 | 1.1:+56391227 | None:intergenic |
| TCTGAAGGGGTCAAAGAAAA+AGG | 0.336391 | 1.1:-56390681 | MS.gene52996:CDS |
| TTGCTTCTGCTCCAAGCTTT+CGG | 0.336692 | 1.1:-56391556 | MS.gene52996:CDS |
| ACCTTCTTCAAGTCAACTTT+AGG | 0.339340 | 1.1:+56391153 | None:intergenic |
| CATATTGTGATTATCAGTTC+CGG | 0.379451 | 1.1:+56392358 | None:intergenic |
| CGGAACTGATAATCACAATA+TGG | 0.387299 | 1.1:-56392357 | MS.gene52996:CDS |
| AACGGTTTCCTTGGAACTAA+AGG | 0.390764 | 1.1:+56391809 | None:intergenic |
| ATTCATGTTCAGTTGCTTCT+GGG | 0.401381 | 1.1:-56391751 | MS.gene52996:intron |
| TTGTTATCTTCTTCAAAAGT+AGG | 0.404232 | 1.1:+56392041 | None:intergenic |
| TTGAGAACACCCTCAAAATC+TGG | 0.409193 | 1.1:+56392185 | None:intergenic |
| TTCAATTAATTCGGTGTGCT+CGG | 0.412792 | 1.1:+56390551 | None:intergenic |
| GAAGATAACAAGGGCGGTAA+TGG | 0.429080 | 1.1:-56392029 | MS.gene52996:CDS |
| TAATACGCTTAAACAGAATC+AGG | 0.429313 | 1.1:-56391970 | MS.gene52996:intron |
| CTGTGAGGTCTTTCAAGTCC+AGG | 0.430512 | 1.1:-56391586 | MS.gene52996:CDS |
| TCAGGTTTCAACGGTTTCCT+TGG | 0.446814 | 1.1:+56391800 | None:intergenic |
| CACAATTCAGGTCATGAAAC+CGG | 0.449746 | 1.1:-56392377 | MS.gene52996:CDS |
| AGAAGTTTCTGTTAAGGCCT+CGG | 0.454828 | 1.1:-56392246 | MS.gene52996:CDS |
| CACATCACTCAAGTTACAAC+TGG | 0.463926 | 1.1:+56390623 | None:intergenic |
| TACAACAGAAGTTTCTGTTA+AGG | 0.465193 | 1.1:-56392252 | MS.gene52996:CDS |
| CGTTCAGTCGACCGAAAGCT+TGG | 0.469154 | 1.1:+56391545 | None:intergenic |
| ATTAATATGATCAAAGTGAA+TGG | 0.469665 | 1.1:-56390525 | MS.gene52996:CDS |
| TTCAAGTCAACTTTAGGTGG+AGG | 0.483139 | 1.1:+56391159 | None:intergenic |
| TTCAGATATTTGTATCATCA+AGG | 0.486869 | 1.1:-56392438 | MS.gene52996:CDS |
| ATCGATTAAGGAAGAGAAAG+AGG | 0.493171 | 1.1:-56391253 | MS.gene52996:intron |
| TGAAGTCTCCTTTAGTTCCA+AGG | 0.494501 | 1.1:-56391817 | MS.gene52996:CDS |
| TTCTTCAAGTCAACTTTAGG+TGG | 0.500721 | 1.1:+56391156 | None:intergenic |
| AGCAGAAGCAACAGTTGCCC+TGG | 0.512471 | 1.1:+56391568 | None:intergenic |
| GAATAGACTACAACACGATC+TGG | 0.520100 | 1.1:+56392413 | None:intergenic |
| GTTCGAAACCGCACAAAACA+AGG | 0.521164 | 1.1:-56392154 | MS.gene52996:CDS |
| TCGTGGTAAAAGCTTGGCAT+AGG | 0.526747 | 1.1:+56391186 | None:intergenic |
| AGCACGCCTTTCAGTTGCTA+GGG | 0.527177 | 1.1:+56392079 | None:intergenic |
| GAAAATGGTCGCGGAACTGT+AGG | 0.532713 | 1.1:+56392101 | None:intergenic |
| GGCCCCTCGTGGTAAAAGCT+TGG | 0.537816 | 1.1:+56391180 | None:intergenic |
| GTGCAGCTAATTCATCTGAA+GGG | 0.542207 | 1.1:-56390695 | MS.gene52996:CDS |
| TAGCACGCCTTTCAGTTGCT+AGG | 0.543009 | 1.1:+56392078 | None:intergenic |
| TGTGAGGTCTTTCAAGTCCA+GGG | 0.549601 | 1.1:-56391585 | MS.gene52996:CDS |
| ACTAACGACAATGGCTTGGA+TGG | 0.551118 | 1.1:-56390600 | MS.gene52996:CDS |
| TTCTTGTTATCAGGTTTCAA+CGG | 0.554280 | 1.1:+56391791 | None:intergenic |
| CGTGGTAAAAGCTTGGCATA+GGG | 0.555406 | 1.1:+56391187 | None:intergenic |
| AGAGGAAAAGCAACAAGCAA+TGG | 0.560439 | 1.1:-56391404 | MS.gene52996:CDS |
| GGTGCAGCTAATTCATCTGA+AGG | 0.565625 | 1.1:-56390696 | MS.gene52996:CDS |
| TGAACGCGCACAAAGAAGAA+AGG | 0.565933 | 1.1:-56391528 | MS.gene52996:CDS |
| CACAAAGGAATACGAGGTGA+AGG | 0.571994 | 1.1:-56392279 | MS.gene52996:CDS |
| ACCTAAAGTTGACTTGAAGA+AGG | 0.572341 | 1.1:-56391154 | MS.gene52996:intron |
| TGTGACTAACGACAATGGCT+TGG | 0.576886 | 1.1:-56390604 | MS.gene52996:CDS |
| ATCAAAGTGAATGGACAAGC+GGG | 0.577317 | 1.1:-56390516 | MS.gene52996:CDS |
| CGTGCAAAATCTCCAAAACT+GGG | 0.584227 | 1.1:-56390738 | MS.gene52996:CDS |
| AAGCCATCAAACAGTTGAGG+AGG | 0.591790 | 1.1:-56391230 | MS.gene52996:CDS |
| CGTGTTGTAGTCTATTCCGA+TGG | 0.596110 | 1.1:-56392407 | MS.gene52996:CDS |
| AGGAAGCCATCAAACAGTTG+AGG | 0.603449 | 1.1:-56391233 | MS.gene52996:CDS |
| TCAAAATGAAGCAAGGAGCA+AGG | 0.605637 | 1.1:-56391368 | MS.gene52996:intron |
| TTCGAAACCGCACAAAACAA+GGG | 0.608167 | 1.1:-56392153 | MS.gene52996:CDS |
| TGAATTGTGCGAAATTCCAT+CGG | 0.608447 | 1.1:+56392391 | None:intergenic |
| AGAAGAATCAAAATGAAGCA+AGG | 0.613159 | 1.1:-56391375 | MS.gene52996:CDS |
| CAAAATCTCCAAAACTGGGT+CGG | 0.613811 | 1.1:-56390734 | MS.gene52996:CDS |
| TGCAGCTAATTCATCTGAAG+GGG | 0.619271 | 1.1:-56390694 | MS.gene52996:CDS |
| GTTGCTAGGGAAAATGGTCG+CGG | 0.629133 | 1.1:+56392092 | None:intergenic |
| TCGAAACCGCACAAAACAAG+GGG | 0.655229 | 1.1:-56392152 | MS.gene52996:CDS |
| GATCAAAGTGAATGGACAAG+CGG | 0.657804 | 1.1:-56390517 | MS.gene52996:CDS |
| TTTGAAGAAGATAACAAGGG+CGG | 0.669853 | 1.1:-56392035 | MS.gene52996:CDS |
| CTTTAGGTGGAGGCCCCTCG+TGG | 0.681265 | 1.1:+56391169 | None:intergenic |
| AGAGAGCACAAAGGAATACG+AGG | 0.687992 | 1.1:-56392285 | MS.gene52996:CDS |
| GTAGGCTTGACAGTATCTCG+TGG | 0.692488 | 1.1:+56392119 | None:intergenic |
| ACGCGCACAAAGAAGAAAGG+AGG | 0.694653 | 1.1:-56391525 | MS.gene52996:intron |
| AAAGAACTGCAACTTCTGTG+AGG | 0.704237 | 1.1:-56391601 | MS.gene52996:intron |
| GGTCGGCGAAAGAGCAACAG+CGG | 0.709755 | 1.1:-56390717 | MS.gene52996:CDS |
| TAGTTCAGAAGAGAGCACAA+AGG | 0.711655 | 1.1:-56392294 | MS.gene52996:CDS |
| AGTGATGTGACTAACGACAA+TGG | 0.713243 | 1.1:-56390609 | MS.gene52996:CDS |
| TAACAAGAAACATTCAGACG+AGG | 0.732280 | 1.1:-56391777 | MS.gene52996:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTTCTTCAATTAATT+CGG | + | chr1.1:56392407-56392426 | None:intergenic | 10.0% |
| !!! | ATAGTTTTATTCAAAATTAG+AGG | - | chr1.1:56391524-56391543 | MS.gene52996:intron | 15.0% |
| !! | AAACTATAGCACAAATAAAA+AGG | + | chr1.1:56391511-56391530 | None:intergenic | 20.0% |
| !! | ATTAATATGATCAAAGTGAA+TGG | - | chr1.1:56392421-56392440 | MS.gene52996:CDS | 20.0% |
| !! | CAAAATGACAATGTAATTTA+TGG | + | chr1.1:56391634-56391653 | None:intergenic | 20.0% |
| !!! | TTTGACTTCATTTTATCTTT+TGG | + | chr1.1:56391915-56391934 | None:intergenic | 20.0% |
| ! | AATGACAATGTTAACATGTA+TGG | - | chr1.1:56392169-56392188 | MS.gene52996:CDS | 25.0% |
| ! | ATCTAACCTAAAAAAAAGTG+AGG | - | chr1.1:56390727-56390746 | MS.gene52996:CDS | 25.0% |
| ! | TAATTGAGTGGTTATCATAT+AGG | - | chr1.1:56391864-56391883 | MS.gene52996:intron | 25.0% |
| ! | TTATAAACCTTATAGTCGAA+GGG | - | chr1.1:56391225-56391244 | MS.gene52996:CDS | 25.0% |
| ! | TTCAGATATTTGTATCATCA+AGG | - | chr1.1:56390508-56390527 | MS.gene52996:CDS | 25.0% |
| ! | TTGTTATCTTCTTCAAAAGT+AGG | + | chr1.1:56390908-56390927 | None:intergenic | 25.0% |
| !!! | ACTTTTGAAGAAGATAACAA+GGG | - | chr1.1:56390908-56390927 | MS.gene52996:intron | 25.0% |
| !!! | TAAGTAGCTTTGTTTCAATA+GGG | - | chr1.1:56391458-56391477 | MS.gene52996:intron | 25.0% |
| !!! | TACTTTTGAAGAAGATAACA+AGG | - | chr1.1:56390907-56390926 | MS.gene52996:intron | 25.0% |
| !!! | TCTAATTTGTTCATCGATTA+AGG | - | chr1.1:56391681-56391700 | MS.gene52996:intron | 25.0% |
| !!! | TTAAGTAGCTTTGTTTCAAT+AGG | - | chr1.1:56391457-56391476 | MS.gene52996:intron | 25.0% |
| AATAGATTAGACAATGAAGG+AGG | + | chr1.1:56391026-56391045 | None:intergenic | 30.0% | |
| AGAAGAATCAAAATGAAGCA+AGG | - | chr1.1:56391571-56391590 | MS.gene52996:CDS | 30.0% | |
| AGAGATTTCTTCATTATCTC+AGG | - | chr1.1:56391606-56391625 | MS.gene52996:intron | 30.0% | |
| AGCAATAGATTAGACAATGA+AGG | + | chr1.1:56391029-56391048 | None:intergenic | 30.0% | |
| ATCTATTGCTGAACTGTTTA+TGG | - | chr1.1:56391039-56391058 | MS.gene52996:intron | 30.0% | |
| CAAATTAGAGTGAGAAAACT+AGG | + | chr1.1:56391670-56391689 | None:intergenic | 30.0% | |
| CATATTGTGATTATCAGTTC+CGG | + | chr1.1:56390591-56390610 | None:intergenic | 30.0% | |
| CTTATAAACCTTATAGTCGA+AGG | - | chr1.1:56391224-56391243 | MS.gene52996:CDS | 30.0% | |
| GGATAAACAACTTAATTGAG+TGG | - | chr1.1:56391852-56391871 | MS.gene52996:intron | 30.0% | |
| TAATACGCTTAAACAGAATC+AGG | - | chr1.1:56390976-56390995 | MS.gene52996:intron | 30.0% | |
| TACAACAGAAGTTTCTGTTA+AGG | - | chr1.1:56390694-56390713 | MS.gene52996:CDS | 30.0% | |
| TCAGACATGATACTGTTATA+AGG | + | chr1.1:56392031-56392050 | None:intergenic | 30.0% | |
| TTATAACAGTATCATGTCTG+AGG | - | chr1.1:56392030-56392049 | MS.gene52996:CDS | 30.0% | |
| ! | ATTAAGTTGTTTATCCCAAC+AGG | + | chr1.1:56391848-56391867 | None:intergenic | 30.0% |
| ! | TCTGAATGTTTCTTGTTATC+AGG | + | chr1.1:56391167-56391186 | None:intergenic | 30.0% |
| ! | TTAAGTTGTTTATCCCAACA+GGG | + | chr1.1:56391847-56391866 | None:intergenic | 30.0% |
| ! | TTCTTGTTATCAGGTTTCAA+CGG | + | chr1.1:56391158-56391177 | None:intergenic | 30.0% |
| !!! | ACTTCTCCTCACTTTTTTTT+AGG | + | chr1.1:56390736-56390755 | None:intergenic | 30.0% |
| ACCTTCTTCAAGTCAACTTT+AGG | + | chr1.1:56391796-56391815 | None:intergenic | 35.0% | |
| ACTTAAACTTATGCCCTGTT+GGG | - | chr1.1:56391831-56391850 | MS.gene52996:intron | 35.0% | |
| AGAAGTTGCAGTTCTTTACA+TGG | + | chr1.1:56391342-56391361 | None:intergenic | 35.0% | |
| ATCGATTAAGGAAGAGAAAG+AGG | - | chr1.1:56391693-56391712 | MS.gene52996:intron | 35.0% | |
| ATTCATGTTCAGTTGCTTCT+GGG | - | chr1.1:56391195-56391214 | MS.gene52996:CDS | 35.0% | |
| CGGAACTGATAATCACAATA+TGG | - | chr1.1:56390589-56390608 | MS.gene52996:CDS | 35.0% | |
| GGAGGAAGCAAATTCAAAAT+CGG | + | chr1.1:56391008-56391027 | None:intergenic | 35.0% | |
| TAACAAGAAACATTCAGACG+AGG | - | chr1.1:56391169-56391188 | MS.gene52996:CDS | 35.0% | |
| TACTTAAACTTATGCCCTGT+TGG | - | chr1.1:56391830-56391849 | MS.gene52996:intron | 35.0% | |
| TGAATTGTGCGAAATTCCAT+CGG | + | chr1.1:56390558-56390577 | None:intergenic | 35.0% | |
| TTCTTCAAGTCAACTTTAGG+TGG | + | chr1.1:56391793-56391812 | None:intergenic | 35.0% | |
| TTTGAAGAAGATAACAAGGG+CGG | - | chr1.1:56390911-56390930 | MS.gene52996:intron | 35.0% | |
| ! | GACTTGAAGAAGGTATGTAA+TGG | - | chr1.1:56391802-56391821 | MS.gene52996:CDS | 35.0% |
| ! | GGTTTTCTTCCCAAATTGAT+CGG | - | chr1.1:56391479-56391498 | MS.gene52996:intron | 35.0% |
| !! | ACCTAAAGTTGACTTGAAGA+AGG | - | chr1.1:56391792-56391811 | MS.gene52996:CDS | 35.0% |
| !! | TTCAATTAATTCGGTGTGCT+CGG | + | chr1.1:56392398-56392417 | None:intergenic | 35.0% |
| AAAGAACTGCAACTTCTGTG+AGG | - | chr1.1:56391345-56391364 | MS.gene52996:intron | 40.0% | |
| AACGGTTTCCTTGGAACTAA+AGG | + | chr1.1:56391140-56391159 | None:intergenic | 40.0% | |
| ACGTGCAAAATCTCCAAAAC+TGG | - | chr1.1:56392207-56392226 | MS.gene52996:CDS | 40.0% | |
| AGAAGTTTCTGTTAAGGCCT+CGG | - | chr1.1:56390700-56390719 | MS.gene52996:CDS | 40.0% | |
| AGAGGAAAAGCAACAAGCAA+TGG | - | chr1.1:56391542-56391561 | MS.gene52996:CDS | 40.0% | |
| AGTGATGTGACTAACGACAA+TGG | - | chr1.1:56392337-56392356 | MS.gene52996:CDS | 40.0% | |
| ATCAAAGTGAATGGACAAGC+GGG | - | chr1.1:56392430-56392449 | MS.gene52996:CDS | 40.0% | |
| CAAAATCTCCAAAACTGGGT+CGG | - | chr1.1:56392212-56392231 | MS.gene52996:CDS | 40.0% | |
| CACAATTCAGGTCATGAAAC+CGG | - | chr1.1:56390569-56390588 | MS.gene52996:CDS | 40.0% | |
| CACATCACTCAAGTTACAAC+TGG | + | chr1.1:56392326-56392345 | None:intergenic | 40.0% | |
| CAGTTCTTTACATGGTCAAG+GGG | + | chr1.1:56391334-56391353 | None:intergenic | 40.0% | |
| CGTGCAAAATCTCCAAAACT+GGG | - | chr1.1:56392208-56392227 | MS.gene52996:CDS | 40.0% | |
| CTTTCAGTTGCTAGGGAAAA+TGG | + | chr1.1:56390863-56390882 | None:intergenic | 40.0% | |
| GAATAGACTACAACACGATC+TGG | + | chr1.1:56390536-56390555 | None:intergenic | 40.0% | |
| GATCAAAGTGAATGGACAAG+CGG | - | chr1.1:56392429-56392448 | MS.gene52996:CDS | 40.0% | |
| GATGGAATTTCGCACAATTC+AGG | - | chr1.1:56390557-56390576 | MS.gene52996:CDS | 40.0% | |
| GATTCATGTTCAGTTGCTTC+TGG | - | chr1.1:56391194-56391213 | MS.gene52996:CDS | 40.0% | |
| GCAGTTCTTTACATGGTCAA+GGG | + | chr1.1:56391335-56391354 | None:intergenic | 40.0% | |
| GTGCAGCTAATTCATCTGAA+GGG | - | chr1.1:56392251-56392270 | MS.gene52996:CDS | 40.0% | |
| TAAAGGAGACTTCAACTGCA+AGG | + | chr1.1:56391123-56391142 | None:intergenic | 40.0% | |
| TCAAAATGAAGCAAGGAGCA+AGG | - | chr1.1:56391578-56391597 | MS.gene52996:CDS | 40.0% | |
| TCTGAAGGGGTCAAAGAAAA+AGG | - | chr1.1:56392265-56392284 | MS.gene52996:CDS | 40.0% | |
| TGCAGCTAATTCATCTGAAG+GGG | - | chr1.1:56392252-56392271 | MS.gene52996:CDS | 40.0% | |
| TGCAGTTCTTTACATGGTCA+AGG | + | chr1.1:56391336-56391355 | None:intergenic | 40.0% | |
| TTCAAGTCAACTTTAGGTGG+AGG | + | chr1.1:56391790-56391809 | None:intergenic | 40.0% | |
| TTCGAAACCGCACAAAACAA+GGG | - | chr1.1:56390793-56390812 | MS.gene52996:intron | 40.0% | |
| TTGAGAACACCCTCAAAATC+TGG | + | chr1.1:56390764-56390783 | None:intergenic | 40.0% | |
| TTTGACACCCTTCGACTATA+AGG | + | chr1.1:56391235-56391254 | None:intergenic | 40.0% | |
| ! | AACAGTCTCACAAGTGCTTT+TGG | - | chr1.1:56391969-56391988 | MS.gene52996:intron | 40.0% |
| ! | AAGGAATGCACCGATCAATT+TGG | + | chr1.1:56391492-56391511 | None:intergenic | 40.0% |
| ! | AAGTTGACGCCAGATTTTGA+GGG | - | chr1.1:56390752-56390771 | MS.gene52996:CDS | 40.0% |
| ! | AGGAATGCACCGATCAATTT+GGG | + | chr1.1:56391491-56391510 | None:intergenic | 40.0% |
| ! | CATTTTCCCTAGCAACTGAA+AGG | - | chr1.1:56390861-56390880 | MS.gene52996:intron | 40.0% |
| ! | TAGTTCAGAAGAGAGCACAA+AGG | - | chr1.1:56390652-56390671 | MS.gene52996:CDS | 40.0% |
| ! | TGAAGTCTCCTTTAGTTCCA+AGG | - | chr1.1:56391129-56391148 | MS.gene52996:intron | 40.0% |
| ! | TTTGGAGATTTTGCACGTGT+GGG | + | chr1.1:56392205-56392224 | None:intergenic | 40.0% |
| !! | TTTTGGAGATTTTGCACGTG+TGG | + | chr1.1:56392206-56392225 | None:intergenic | 40.0% |
| !!! | TGATTACCCCTTGTTTTGTG+CGG | + | chr1.1:56390803-56390822 | None:intergenic | 40.0% |
| !!! | TTTTAGGTTAGATACGTCCG+AGG | + | chr1.1:56390720-56390739 | None:intergenic | 40.0% |
| AAGCCATCAAACAGTTGAGG+AGG | - | chr1.1:56391716-56391735 | MS.gene52996:intron | 45.0% | |
| ACTCCTCCTCAACTGTTTGA+TGG | + | chr1.1:56391722-56391741 | None:intergenic | 45.0% | |
| AGGAAGCCATCAAACAGTTG+AGG | - | chr1.1:56391713-56391732 | MS.gene52996:intron | 45.0% | |
| AGGGGTCAAAGAAAAAGGAG+CGG | - | chr1.1:56392270-56392289 | MS.gene52996:CDS | 45.0% | |
| CACAAAGGAATACGAGGTGA+AGG | - | chr1.1:56390667-56390686 | MS.gene52996:CDS | 45.0% | |
| CGTGGTAAAAGCTTGGCATA+GGG | + | chr1.1:56391762-56391781 | None:intergenic | 45.0% | |
| CGTGTTGTAGTCTATTCCGA+TGG | - | chr1.1:56390539-56390558 | MS.gene52996:CDS | 45.0% | |
| GAAGATAACAAGGGCGGTAA+TGG | - | chr1.1:56390917-56390936 | MS.gene52996:intron | 45.0% | |
| GGTGCAGCTAATTCATCTGA+AGG | - | chr1.1:56392250-56392269 | MS.gene52996:CDS | 45.0% | |
| GTTCGAAACCGCACAAAACA+AGG | - | chr1.1:56390792-56390811 | MS.gene52996:intron | 45.0% | |
| TCAGGTTTCAACGGTTTCCT+TGG | + | chr1.1:56391149-56391168 | None:intergenic | 45.0% | |
| TCGAAACCGCACAAAACAAG+GGG | - | chr1.1:56390794-56390813 | MS.gene52996:intron | 45.0% | |
| TCGTGGTAAAAGCTTGGCAT+AGG | + | chr1.1:56391763-56391782 | None:intergenic | 45.0% | |
| TGAACGCGCACAAAGAAGAA+AGG | - | chr1.1:56391418-56391437 | MS.gene52996:CDS | 45.0% | |
| TGTGACTAACGACAATGGCT+TGG | - | chr1.1:56392342-56392361 | MS.gene52996:CDS | 45.0% | |
| TTGCTTCTGCTCCAAGCTTT+CGG | - | chr1.1:56391390-56391409 | MS.gene52996:CDS | 45.0% | |
| ! | ACTAACGACAATGGCTTGGA+TGG | - | chr1.1:56392346-56392365 | MS.gene52996:CDS | 45.0% |
| ! | AGAGAGCACAAAGGAATACG+AGG | - | chr1.1:56390661-56390680 | MS.gene52996:CDS | 45.0% |
| ! | ATGCCAAGCTTTTACCACGA+GGG | - | chr1.1:56391763-56391782 | MS.gene52996:CDS | 45.0% |
| ! | GAAGTTGACGCCAGATTTTG+AGG | - | chr1.1:56390751-56390770 | MS.gene52996:CDS | 45.0% |
| ! | TATGCCAAGCTTTTACCACG+AGG | - | chr1.1:56391762-56391781 | MS.gene52996:CDS | 45.0% |
| ! | TGTGAGGTCTTTCAAGTCCA+GGG | - | chr1.1:56391361-56391380 | MS.gene52996:intron | 45.0% |
| ACGCGCACAAAGAAGAAAGG+AGG | - | chr1.1:56391421-56391440 | MS.gene52996:CDS | 50.0% | |
| AGCACGCCTTTCAGTTGCTA+GGG | + | chr1.1:56390870-56390889 | None:intergenic | 50.0% | |
| GAAAATGGTCGCGGAACTGT+AGG | + | chr1.1:56390848-56390867 | None:intergenic | 50.0% | |
| GTAGGCTTGACAGTATCTCG+TGG | + | chr1.1:56390830-56390849 | None:intergenic | 50.0% | |
| GTTGCTAGGGAAAATGGTCG+CGG | + | chr1.1:56390857-56390876 | None:intergenic | 50.0% | |
| TAGCACGCCTTTCAGTTGCT+AGG | + | chr1.1:56390871-56390890 | None:intergenic | 50.0% | |
| ! | CTGTGAGGTCTTTCAAGTCC+AGG | - | chr1.1:56391360-56391379 | MS.gene52996:intron | 50.0% |
| ! | TGCCAAGCTTTTACCACGAG+GGG | - | chr1.1:56391764-56391783 | MS.gene52996:CDS | 50.0% |
| AGCAGAAGCAACAGTTGCCC+TGG | + | chr1.1:56391381-56391400 | None:intergenic | 55.0% | |
| CGTTCAGTCGACCGAAAGCT+TGG | + | chr1.1:56391404-56391423 | None:intergenic | 55.0% | |
| ! | CTCTTTCGCCGACCCAGTTT+TGG | + | chr1.1:56392223-56392242 | None:intergenic | 55.0% |
| ! | GGAGATTTTGCACGTGTGGG+TGG | + | chr1.1:56392202-56392221 | None:intergenic | 55.0% |
| GGCCCCTCGTGGTAAAAGCT+TGG | + | chr1.1:56391769-56391788 | None:intergenic | 60.0% | |
| GGTCGGCGAAAGAGCAACAG+CGG | - | chr1.1:56392229-56392248 | MS.gene52996:CDS | 60.0% | |
| TTGCACGTGTGGGTGGTAGC+TGG | + | chr1.1:56392195-56392214 | None:intergenic | 60.0% | |
| CTTTAGGTGGAGGCCCCTCG+TGG | + | chr1.1:56391780-56391799 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 56390494 | 56392474 | 56390494 | ID=MS.gene52996 |
| chr1.1 | mRNA | 56390494 | 56392474 | 56390494 | ID=MS.gene52996.t1;Parent=MS.gene52996 |
| chr1.1 | exon | 56391971 | 56392474 | 56391971 | ID=MS.gene52996.t1.exon1;Parent=MS.gene52996.t1 |
| chr1.1 | CDS | 56391971 | 56392474 | 56391971 | ID=cds.MS.gene52996.t1;Parent=MS.gene52996.t1 |
| chr1.1 | exon | 56391752 | 56391840 | 56391752 | ID=MS.gene52996.t1.exon2;Parent=MS.gene52996.t1 |
| chr1.1 | CDS | 56391752 | 56391840 | 56391752 | ID=cds.MS.gene52996.t1;Parent=MS.gene52996.t1 |
| chr1.1 | exon | 56391526 | 56391619 | 56391526 | ID=MS.gene52996.t1.exon3;Parent=MS.gene52996.t1 |
| chr1.1 | CDS | 56391526 | 56391619 | 56391526 | ID=cds.MS.gene52996.t1;Parent=MS.gene52996.t1 |
| chr1.1 | exon | 56391369 | 56391440 | 56391369 | ID=MS.gene52996.t1.exon4;Parent=MS.gene52996.t1 |
| chr1.1 | CDS | 56391369 | 56391440 | 56391369 | ID=cds.MS.gene52996.t1;Parent=MS.gene52996.t1 |
| chr1.1 | exon | 56391155 | 56391265 | 56391155 | ID=MS.gene52996.t1.exon5;Parent=MS.gene52996.t1 |
| chr1.1 | CDS | 56391155 | 56391265 | 56391155 | ID=cds.MS.gene52996.t1;Parent=MS.gene52996.t1 |
| chr1.1 | exon | 56390494 | 56390772 | 56390494 | ID=MS.gene52996.t1.exon6;Parent=MS.gene52996.t1 |
| chr1.1 | CDS | 56390494 | 56390772 | 56390494 | ID=cds.MS.gene52996.t1;Parent=MS.gene52996.t1 |
| Gene Sequence |
| Protein sequence |
