AlfalfaGEDB | MS.gene09934

M. sativa cultivar XinJiangDaYe / MS.gene09934

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF00036.35 PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09934.t1	XP_003611244.1	99.3	147	1	0	1	147	1	147	1.60E-75	292

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09934.t1	Q94AZ4	87.8	148	17	1	1	147	1	148	4.2e-69	261.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09934.t1	B7FNA2	99.3	147	1	0	1	147	1	147	1.1e-75	292.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049807	MS.gene09934	0.846549	2.03E-59	-1.69E-46
MS.gene050352	MS.gene09934	0.804657	1.94E-49	-1.69E-46
MS.gene050864	MS.gene09934	0.839948	1.17E-57	-1.69E-46
MS.gene051234	MS.gene09934	0.815746	7.89E-52	-1.69E-46
MS.gene051538	MS.gene09934	0.807982	3.87E-50	-1.69E-46
MS.gene051648	MS.gene09934	0.863222	2.90E-64	-1.69E-46
MS.gene052155	MS.gene09934	-0.800897	1.16E-48	-1.69E-46
MS.gene053536	MS.gene09934	0.871439	6.83E-67	-1.69E-46
MS.gene053538	MS.gene09934	0.873582	1.31E-67	-1.69E-46
MS.gene054142	MS.gene09934	0.806264	8.95E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000724	MS.gene09934	PPI
MS.gene000738	MS.gene09934	PPI
MS.gene001246	MS.gene09934	PPI
MS.gene003880	MS.gene09934	PPI
MS.gene004899	MS.gene09934	PPI
MS.gene008225	MS.gene09934	PPI
MS.gene008831	MS.gene09934	PPI
MS.gene009021	MS.gene09934	PPI
MS.gene011400	MS.gene09934	PPI
MS.gene013748	MS.gene09934	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09934.t1	MTR_5g011850	99.320	147	1	0	1	147	1	147	2.52e-105	297
MS.gene09934.t1	MTR_6g025320	51.007	149	71	1	1	147	1	149	4.04e-49	155
MS.gene09934.t1	MTR_7g087610	50.336	149	72	1	1	147	1	149	1.22e-48	154
MS.gene09934.t1	MTR_5g088320	50.336	149	72	1	1	147	1	149	1.95e-48	153
MS.gene09934.t1	MTR_1g041285	42.568	148	83	1	1	146	1	148	4.15e-40	132
MS.gene09934.t1	MTR_1g076650	40.541	148	86	1	1	146	1	148	7.85e-38	126
MS.gene09934.t1	MTR_0168s0120	48.673	113	56	1	37	147	1	113	8.70e-34	115
MS.gene09934.t1	MTR_6g025320	48.673	113	56	1	37	147	1	113	8.70e-34	115
MS.gene09934.t1	MTR_1g071150	36.054	147	91	2	1	145	1	146	5.92e-30	106
MS.gene09934.t1	MTR_8g066630	36.170	141	85	3	5	140	10	150	4.85e-25	94.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09934.t1	AT1G12310	87.838	148	17	1	1	147	1	148	5.46e-93	266
MS.gene09934.t1	AT1G62820	83.784	148	23	1	1	147	1	148	8.88e-90	258
MS.gene09934.t1	AT5G21274	51.007	149	71	1	1	147	1	149	4.18e-49	155
MS.gene09934.t1	AT3G43810	51.007	149	71	1	1	147	1	149	4.23e-49	155
MS.gene09934.t1	AT3G56800	50.336	149	72	1	1	147	1	149	1.45e-48	153
MS.gene09934.t1	AT2G27030	50.336	149	72	1	1	147	1	149	1.45e-48	153
MS.gene09934.t1	AT2G41110	50.336	149	72	1	1	147	1	149	1.45e-48	153
MS.gene09934.t1	AT2G27030	50.336	149	72	1	1	147	1	149	3.66e-48	153
MS.gene09934.t1	AT5G37780	50.336	149	72	1	1	147	1	149	4.01e-48	152
MS.gene09934.t1	AT1G66410	50.336	149	72	1	1	147	1	149	4.01e-48	152

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Find 36 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAACGAAAATGGGTA+AGG	0.546646	5.1:+5246624	None:intergenic
AAATCGAGAGAAATCGAAAG+GGG	0.678072	5.1:-5246815	None:intergenic
AACCGTTCGATCGTCAACTA+AGG	0.463624	5.1:+5246869	MS.gene09934:CDS
AAGATCGCACCATCGGAGCT+CGG	0.573545	5.1:+5246715	MS.gene09934:CDS
AAGTTGATGTTGGGTCTGAT+GGG	0.550763	5.1:+5247013	MS.gene09934:CDS
ACCGTTCGATCGTCAACTAA+GGG	0.604940	5.1:+5246870	MS.gene09934:CDS
AGAAATCGAGAGAAATCGAA+AGG	0.584540	5.1:-5246817	None:intergenic
AGCCTGCTGAGTTTGATGAA+TGG	0.478011	5.1:+5246983	MS.gene09934:CDS
AGGGGAGGTTAGATTCTCTT+CGG	0.513129	5.1:-5246797	None:intergenic
AGTTGACGATCGAACGGTTC+AGG	0.312022	5.1:-5246865	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCGAGAGAAATCGAAAG+GGG	-	chr5.1:5246818-5246837	None:intergenic	35.0%
AGAAATCGAGAGAAATCGAA+AGG	-	chr5.1:5246820-5246839	None:intergenic	35.0%
GAAATCGAGAGAAATCGAAA+GGG	-	chr5.1:5246819-5246838	None:intergenic	35.0%
TGAAGATTTCATCGCTAGAA+TGG	+	chr5.1:5247047-5247066	MS.gene09934:CDS	35.0%
ATCCATTCATCAAACTCAGC+AGG	-	chr5.1:5246988-5247007	None:intergenic	40.0%
GTTCTCGATAAAGATGCTAC+TGG	+	chr5.1:5246904-5246923	MS.gene09934:CDS	40.0%
AACCGTTCGATCGTCAACTA+AGG	+	chr5.1:5246869-5246888	MS.gene09934:CDS	45.0%
ACCGTTCGATCGTCAACTAA+GGG	+	chr5.1:5246870-5246889	MS.gene09934:CDS	45.0%
AGCCTGCTGAGTTTGATGAA+TGG	+	chr5.1:5246983-5247002	MS.gene09934:CDS	45.0%
AGGGGAGGTTAGATTCTCTT+CGG	-	chr5.1:5246800-5246819	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	5246637	5247080	5246637	ID=MS.gene09934
chr5.1	mRNA	5246637	5247080	5246637	ID=MS.gene09934.t1;Parent=MS.gene09934
chr5.1	exon	5246637	5247080	5246637	ID=MS.gene09934.t1.exon1;Parent=MS.gene09934.t1
chr5.1	CDS	5246637	5247080	5246637	ID=cds.MS.gene09934.t1;Parent=MS.gene09934.t1

Gene Sequence

>MS.gene09934

ATGGGTAAGGATCTGAGCGACGATCAAATCTCATCAATGAAAGAAGCATTCACACTCTTCGACACCGACAACGACGGCAAGATCGCACCATCGGAGCTCGGAATCCTCATGCGTTCTCTCGGCGGTAACCCGACCCAAGCCCAACTCAAATCCATCGTCGCCGAAGAGAATCTAACCTCCCCTTTCGATTTCTCTCGATTTCTCGATCTCATGTCCAAACACATGAAACCTGAACCGTTCGATCGTCAACTAAGGGATGCGTTCAAAGTTCTCGATAAAGATGCTACTGGATTTGTTTCTGTCAATGAGCTTCGTCATATTTTGACGAGTATTGGTGAGAAGCTTGAGCCTGCTGAGTTTGATGAATGGATTAGGGAAGTTGATGTTGGGTCTGATGGGAAGATTCGTTATGAAGATTTCATCGCTAGAATGGTTGCGAAGTGA

Protein sequence

>MS.gene09934.t1

MGKDLSDDQISSMKEAFTLFDTDNDGKIAPSELGILMRSLGGNPTQAQLKSIVAEENLTSPFDFSRFLDLMSKHMKPEPFDRQLRDAFKVLDKDATGFVSVNELRHILTSIGEKLEPAEFDEWIREVDVGSDGKIRYEDFIARMVAK