Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066010.t1 | XP_003590791.1 | 86.2 | 383 | 52 | 1 | 1 | 382 | 1 | 383 | 1.00E-142 | 516.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066010.t1 | Q84WL6 | 42.7 | 337 | 147 | 7 | 7 | 333 | 2 | 302 | 9.0e-47 | 189.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066010.t1 | G7I3Y8 | 86.2 | 383 | 52 | 1 | 1 | 382 | 1 | 383 | 7.4e-143 | 516.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049227 | MS.gene066010 | 0.806502 | 7.98E-50 | -1.69E-46 |
| MS.gene049328 | MS.gene066010 | 0.807363 | 5.24E-50 | -1.69E-46 |
| MS.gene049418 | MS.gene066010 | 0.859236 | 4.76E-63 | -1.69E-46 |
| MS.gene049807 | MS.gene066010 | 0.820901 | 5.37E-53 | -1.69E-46 |
| MS.gene04985 | MS.gene066010 | 0.82888 | 7.03E-55 | -1.69E-46 |
| MS.gene049989 | MS.gene066010 | 0.824627 | 7.29E-54 | -1.69E-46 |
| MS.gene050071 | MS.gene066010 | 0.826667 | 2.39E-54 | -1.69E-46 |
| MS.gene050297 | MS.gene066010 | 0.87498 | 4.42E-68 | -1.69E-46 |
| MS.gene050310 | MS.gene066010 | 0.846883 | 1.64E-59 | -1.69E-46 |
| MS.gene050648 | MS.gene066010 | 0.818648 | 1.76E-52 | -1.69E-46 |
| MS.gene051018 | MS.gene066010 | 0.810592 | 1.07E-50 | -1.69E-46 |
| MS.gene051067 | MS.gene066010 | 0.848322 | 6.60E-60 | -1.69E-46 |
| MS.gene051263 | MS.gene066010 | 0.825377 | 4.85E-54 | -1.69E-46 |
| MS.gene051478 | MS.gene066010 | 0.825504 | 4.52E-54 | -1.69E-46 |
| MS.gene051648 | MS.gene066010 | 0.880832 | 3.97E-70 | -1.69E-46 |
| MS.gene051660 | MS.gene066010 | 0.80769 | 4.47E-50 | -1.69E-46 |
| MS.gene051664 | MS.gene066010 | 0.822494 | 2.30E-53 | -1.69E-46 |
| MS.gene052143 | MS.gene066010 | 0.803033 | 4.23E-49 | -1.69E-46 |
| MS.gene052150 | MS.gene066010 | 0.838572 | 2.66E-57 | -1.69E-46 |
| MS.gene052151 | MS.gene066010 | 0.84314 | 1.68E-58 | -1.69E-46 |
| MS.gene052155 | MS.gene066010 | -0.802722 | 4.90E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene066010 | 0.807107 | 5.94E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene066010 | 0.840343 | 9.21E-58 | -1.69E-46 |
| MS.gene053536 | MS.gene066010 | 0.877046 | 8.60E-69 | -1.69E-46 |
| MS.gene053538 | MS.gene066010 | 0.880614 | 4.75E-70 | -1.69E-46 |
| MS.gene054584 | MS.gene066010 | 0.827297 | 1.69E-54 | -1.69E-46 |
| MS.gene054643 | MS.gene066010 | 0.842198 | 2.99E-58 | -1.69E-46 |
| MS.gene054999 | MS.gene066010 | 0.865952 | 4.06E-65 | -1.69E-46 |
| MS.gene055251 | MS.gene066010 | 0.803612 | 3.21E-49 | -1.69E-46 |
| MS.gene055331 | MS.gene066010 | 0.820238 | 7.62E-53 | -1.69E-46 |
| MS.gene055537 | MS.gene066010 | 0.844459 | 7.46E-59 | -1.69E-46 |
| MS.gene055764 | MS.gene066010 | 0.861338 | 1.10E-63 | -1.69E-46 |
| MS.gene056169 | MS.gene066010 | 0.830975 | 2.17E-55 | -1.69E-46 |
| MS.gene057004 | MS.gene066010 | 0.806067 | 9.85E-50 | -1.69E-46 |
| MS.gene057082 | MS.gene066010 | 0.849203 | 3.76E-60 | -1.69E-46 |
| MS.gene058197 | MS.gene066010 | 0.833297 | 5.78E-56 | -1.69E-46 |
| MS.gene058198 | MS.gene066010 | 0.827069 | 1.92E-54 | -1.69E-46 |
| MS.gene058210 | MS.gene066010 | 0.828189 | 1.03E-54 | -1.69E-46 |
| MS.gene058818 | MS.gene066010 | 0.804837 | 1.78E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene066010 | 0.860089 | 2.63E-63 | -1.69E-46 |
| MS.gene059300 | MS.gene066010 | 0.843842 | 1.09E-58 | -1.69E-46 |
| MS.gene059424 | MS.gene066010 | 0.878316 | 3.10E-69 | -1.69E-46 |
| MS.gene059425 | MS.gene066010 | 0.807729 | 4.38E-50 | -1.69E-46 |
| MS.gene05970 | MS.gene066010 | 0.810309 | 1.23E-50 | -1.69E-46 |
| MS.gene05971 | MS.gene066010 | 0.811609 | 6.43E-51 | -1.69E-46 |
| MS.gene059778 | MS.gene066010 | 0.861272 | 1.15E-63 | -1.69E-46 |
| MS.gene060283 | MS.gene066010 | 0.80705 | 6.11E-50 | -1.69E-46 |
| MS.gene060491 | MS.gene066010 | 0.812928 | 3.31E-51 | -1.69E-46 |
| MS.gene06057 | MS.gene066010 | 0.86785 | 1.01E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066010.t1 | MTR_1g075310 | 93.995 | 383 | 22 | 1 | 1 | 382 | 1 | 383 | 0.0 | 734 |
| MS.gene066010.t1 | MTR_1g080690 | 43.023 | 258 | 133 | 6 | 61 | 313 | 45 | 293 | 1.25e-44 | 158 |
| MS.gene066010.t1 | MTR_7g115310 | 59.559 | 136 | 51 | 1 | 179 | 314 | 178 | 309 | 2.43e-32 | 129 |
| MS.gene066010.t1 | MTR_7g106750 | 54.198 | 131 | 54 | 3 | 185 | 315 | 213 | 337 | 6.17e-31 | 122 |
| MS.gene066010.t1 | MTR_1g012530 | 53.913 | 115 | 48 | 2 | 217 | 331 | 229 | 338 | 1.29e-29 | 119 |
| MS.gene066010.t1 | MTR_3g107050 | 60.870 | 92 | 36 | 0 | 217 | 308 | 212 | 303 | 1.02e-28 | 116 |
| MS.gene066010.t1 | MTR_1g055085 | 60.194 | 103 | 39 | 2 | 213 | 315 | 231 | 331 | 1.31e-27 | 113 |
| MS.gene066010.t1 | MTR_1g012530 | 58.667 | 75 | 31 | 0 | 217 | 291 | 229 | 303 | 4.88e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066010.t1 | AT3G23090 | 49.701 | 334 | 128 | 8 | 7 | 333 | 2 | 302 | 7.79e-83 | 256 |
| MS.gene066010.t1 | AT3G23090 | 49.701 | 334 | 128 | 8 | 7 | 333 | 38 | 338 | 1.80e-82 | 256 |
| MS.gene066010.t1 | AT3G23090 | 49.401 | 334 | 129 | 8 | 7 | 333 | 3 | 303 | 5.80e-82 | 254 |
| MS.gene066010.t1 | AT3G23090 | 49.112 | 338 | 128 | 9 | 7 | 333 | 2 | 306 | 3.39e-81 | 252 |
| MS.gene066010.t1 | AT3G23090 | 49.112 | 338 | 128 | 9 | 7 | 333 | 38 | 342 | 6.76e-81 | 253 |
| MS.gene066010.t1 | AT1G54460 | 48.551 | 276 | 106 | 11 | 63 | 335 | 40 | 282 | 3.17e-61 | 201 |
| MS.gene066010.t1 | AT3G04630 | 60.993 | 141 | 52 | 2 | 168 | 305 | 82 | 222 | 3.01e-50 | 171 |
| MS.gene066010.t1 | AT3G04630 | 60.993 | 141 | 52 | 2 | 168 | 305 | 78 | 218 | 3.07e-50 | 171 |
| MS.gene066010.t1 | AT3G04630 | 62.222 | 135 | 49 | 1 | 173 | 305 | 83 | 217 | 5.02e-50 | 170 |
| MS.gene066010.t1 | AT5G28646 | 54.194 | 155 | 62 | 3 | 162 | 314 | 40 | 187 | 3.77e-41 | 144 |
| MS.gene066010.t1 | AT5G28646 | 54.194 | 155 | 62 | 3 | 162 | 314 | 40 | 187 | 3.77e-41 | 144 |
| MS.gene066010.t1 | AT5G28646 | 58.647 | 133 | 49 | 2 | 184 | 314 | 55 | 183 | 1.61e-40 | 142 |
| MS.gene066010.t1 | AT2G35880 | 57.143 | 133 | 54 | 2 | 178 | 310 | 210 | 339 | 2.88e-33 | 129 |
| MS.gene066010.t1 | AT2G35880 | 57.143 | 133 | 54 | 2 | 178 | 310 | 210 | 339 | 2.88e-33 | 129 |
| MS.gene066010.t1 | AT2G35880 | 57.143 | 133 | 54 | 2 | 178 | 310 | 210 | 339 | 2.88e-33 | 129 |
| MS.gene066010.t1 | AT4G32330 | 54.098 | 122 | 56 | 0 | 189 | 310 | 180 | 301 | 7.74e-31 | 122 |
| MS.gene066010.t1 | AT4G32330 | 54.098 | 122 | 56 | 0 | 189 | 310 | 180 | 301 | 7.74e-31 | 122 |
| MS.gene066010.t1 | AT4G32330 | 54.098 | 122 | 56 | 0 | 189 | 310 | 180 | 301 | 7.74e-31 | 122 |
| MS.gene066010.t1 | AT4G32330 | 61.702 | 94 | 36 | 0 | 217 | 310 | 207 | 300 | 1.80e-30 | 121 |
| MS.gene066010.t1 | AT2G25480 | 58.416 | 101 | 41 | 1 | 217 | 317 | 184 | 283 | 1.78e-27 | 112 |
| MS.gene066010.t1 | AT2G25480 | 58.416 | 101 | 41 | 1 | 217 | 317 | 183 | 282 | 1.83e-27 | 112 |
| MS.gene066010.t1 | AT1G70950 | 50.617 | 81 | 40 | 0 | 218 | 298 | 330 | 410 | 4.01e-16 | 80.1 |
Find 76 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCATGTTCAGTTGCTTC+TGG | 0.221500 | 1.2:-58056743 | MS.gene066010:CDS |
| CTCTTTCGCCGACCCAGTTT+TGG | 0.233302 | 1.2:+58055717 | None:intergenic |
| TCTGAATGTTTCTTGTTATC+AGG | 0.235516 | 1.2:+58056773 | None:intergenic |
| GATGGAATTTCGCACAATTC+AGG | 0.294711 | 1.2:-58057380 | MS.gene066010:CDS |
| ACGTGCAAAATCTCCAAAAC+TGG | 0.305226 | 1.2:-58055730 | MS.gene066010:CDS |
| ATTAATTTCTTCAATTAATT+CGG | 0.315412 | 1.2:+58055533 | None:intergenic |
| CTTTCAGTTGCTAGGGAAAA+TGG | 0.316077 | 1.2:+58057077 | None:intergenic |
| ACTCCTCCTCAACTGTTTGA+TGG | 0.328938 | 1.2:+58056218 | None:intergenic |
| TCTGAAGGGGTCAAAGAAAA+AGG | 0.336391 | 1.2:-58055672 | MS.gene066010:CDS |
| TTGCTTCTGCTCCAAGCTTT+CGG | 0.336692 | 1.2:-58056547 | MS.gene066010:CDS |
| ACCTTCTTCAAGTCAACTTT+AGG | 0.339340 | 1.2:+58056144 | None:intergenic |
| CATATTGTGATTATCAGTTC+CGG | 0.379451 | 1.2:+58057349 | None:intergenic |
| CGGAACTGATAATCACAATA+TGG | 0.387299 | 1.2:-58057348 | MS.gene066010:CDS |
| AACGGTTTCCTTGGAACTAA+AGG | 0.390764 | 1.2:+58056800 | None:intergenic |
| ATTCATGTTCAGTTGCTTCT+GGG | 0.401381 | 1.2:-58056742 | MS.gene066010:intron |
| TTGTTATCTTCTTCAAAAGT+AGG | 0.404232 | 1.2:+58057032 | None:intergenic |
| TTGAGAACACCCTCAAAATC+TGG | 0.409193 | 1.2:+58057176 | None:intergenic |
| TTCAATTAATTCGGTGTGCT+CGG | 0.412792 | 1.2:+58055542 | None:intergenic |
| GAAGATAACAAGGGCGGTAA+TGG | 0.429080 | 1.2:-58057020 | MS.gene066010:CDS |
| TAATACGCTTAAACAGAATC+AGG | 0.429313 | 1.2:-58056961 | MS.gene066010:intron |
| CTGTGAGGTCTTTCAAGTCC+AGG | 0.430512 | 1.2:-58056577 | MS.gene066010:CDS |
| TCAGGTTTCAACGGTTTCCT+TGG | 0.446814 | 1.2:+58056791 | None:intergenic |
| CACAATTCAGGTCATGAAAC+CGG | 0.449746 | 1.2:-58057368 | MS.gene066010:CDS |
| AGAAGTTTCTGTTAAGGCCT+CGG | 0.454828 | 1.2:-58057237 | MS.gene066010:CDS |
| CACATCACTCAAGTTACAAC+TGG | 0.463926 | 1.2:+58055614 | None:intergenic |
| TACAACAGAAGTTTCTGTTA+AGG | 0.465193 | 1.2:-58057243 | MS.gene066010:CDS |
| CGTTCAGTCGACCGAAAGCT+TGG | 0.469154 | 1.2:+58056536 | None:intergenic |
| ATTAATATGATCAAAGTGAA+TGG | 0.469665 | 1.2:-58055516 | MS.gene066010:CDS |
| TTCAAGTCAACTTTAGGTGG+AGG | 0.483139 | 1.2:+58056150 | None:intergenic |
| TTCAGATATTTGTATCATCA+AGG | 0.486869 | 1.2:-58057429 | MS.gene066010:CDS |
| ATCGATTAAGGAAGAGAAAG+AGG | 0.493171 | 1.2:-58056244 | MS.gene066010:intron |
| TGAAGTCTCCTTTAGTTCCA+AGG | 0.494501 | 1.2:-58056808 | MS.gene066010:CDS |
| TTCTTCAAGTCAACTTTAGG+TGG | 0.500721 | 1.2:+58056147 | None:intergenic |
| AGCAGAAGCAACAGTTGCCC+TGG | 0.512471 | 1.2:+58056559 | None:intergenic |
| GAATAGACTACAACACGATC+TGG | 0.520100 | 1.2:+58057404 | None:intergenic |
| GTTCAAAACCGCACAAAACA+AGG | 0.521164 | 1.2:-58057145 | MS.gene066010:CDS |
| TCGTGGTAAAAGCTTGGCAT+AGG | 0.526747 | 1.2:+58056177 | None:intergenic |
| AGCACGCCTTTCAGTTGCTA+GGG | 0.527177 | 1.2:+58057070 | None:intergenic |
| GAAAATGGTCGCGGAACTGT+AGG | 0.532713 | 1.2:+58057092 | None:intergenic |
| GGCCCCTCGTGGTAAAAGCT+TGG | 0.537816 | 1.2:+58056171 | None:intergenic |
| GTGCAGCTAATTCATCTGAA+GGG | 0.542207 | 1.2:-58055686 | MS.gene066010:CDS |
| TAGCACGCCTTTCAGTTGCT+AGG | 0.543009 | 1.2:+58057069 | None:intergenic |
| TGTGAGGTCTTTCAAGTCCA+GGG | 0.549601 | 1.2:-58056576 | MS.gene066010:CDS |
| ACTAACGACAATGGCTTGGA+TGG | 0.551118 | 1.2:-58055591 | MS.gene066010:CDS |
| TTCTTGTTATCAGGTTTCAA+CGG | 0.554280 | 1.2:+58056782 | None:intergenic |
| CGTGGTAAAAGCTTGGCATA+GGG | 0.555406 | 1.2:+58056178 | None:intergenic |
| AGAGGAAAAGCAACAAGCAA+TGG | 0.560439 | 1.2:-58056395 | MS.gene066010:CDS |
| GGTGCAGCTAATTCATCTGA+AGG | 0.565625 | 1.2:-58055687 | MS.gene066010:CDS |
| TGAACGCGCACAAAGAAGAA+AGG | 0.565933 | 1.2:-58056519 | MS.gene066010:CDS |
| CACAAAGGAATACGAGGTGA+AGG | 0.571994 | 1.2:-58057270 | MS.gene066010:CDS |
| ACCTAAAGTTGACTTGAAGA+AGG | 0.572341 | 1.2:-58056145 | MS.gene066010:intron |
| TGTGACTAACGACAATGGCT+TGG | 0.576886 | 1.2:-58055595 | MS.gene066010:CDS |
| ATCAAAGTGAATGGACAAGC+GGG | 0.577317 | 1.2:-58055507 | MS.gene066010:CDS |
| CGTGCAAAATCTCCAAAACT+GGG | 0.584227 | 1.2:-58055729 | MS.gene066010:CDS |
| AAGCCATCAAACAGTTGAGG+AGG | 0.591790 | 1.2:-58056221 | MS.gene066010:CDS |
| CGTGTTGTAGTCTATTCCGA+TGG | 0.596110 | 1.2:-58057398 | MS.gene066010:CDS |
| TTCAAAACCGCACAAAACAA+GGG | 0.599610 | 1.2:-58057144 | MS.gene066010:CDS |
| AGGAAGCCATCAAACAGTTG+AGG | 0.603449 | 1.2:-58056224 | MS.gene066010:CDS |
| TCAAAATGAAGCAAGGAGCA+AGG | 0.605637 | 1.2:-58056359 | MS.gene066010:intron |
| TGAATTGTGCGAAATTCCAT+CGG | 0.608447 | 1.2:+58057382 | None:intergenic |
| AGAAGAATCAAAATGAAGCA+AGG | 0.613159 | 1.2:-58056366 | MS.gene066010:CDS |
| CAAAATCTCCAAAACTGGGT+CGG | 0.613811 | 1.2:-58055725 | MS.gene066010:CDS |
| TGCAGCTAATTCATCTGAAG+GGG | 0.619271 | 1.2:-58055685 | MS.gene066010:CDS |
| GTTGCTAGGGAAAATGGTCG+CGG | 0.629133 | 1.2:+58057083 | None:intergenic |
| TCAAAACCGCACAAAACAAG+GGG | 0.655229 | 1.2:-58057143 | MS.gene066010:CDS |
| GATCAAAGTGAATGGACAAG+CGG | 0.657804 | 1.2:-58055508 | MS.gene066010:CDS |
| TTTGAAGAAGATAACAAGGG+CGG | 0.669853 | 1.2:-58057026 | MS.gene066010:CDS |
| CTTTAGGTGGAGGCCCCTCG+TGG | 0.681265 | 1.2:+58056160 | None:intergenic |
| AGAGAGCACAAAGGAATACG+AGG | 0.687992 | 1.2:-58057276 | MS.gene066010:CDS |
| GTAGGCTTGACAGTATCTCG+TGG | 0.692488 | 1.2:+58057110 | None:intergenic |
| ACGCGCACAAAGAAGAAAGG+AGG | 0.694653 | 1.2:-58056516 | MS.gene066010:intron |
| AAAGAACTGCAACTTCTGTG+AGG | 0.704237 | 1.2:-58056592 | MS.gene066010:intron |
| GGTCGGCGAAAGAGCAACAG+CGG | 0.709755 | 1.2:-58055708 | MS.gene066010:CDS |
| TAGTTCAGAAGAGAGCACAA+AGG | 0.711655 | 1.2:-58057285 | MS.gene066010:CDS |
| AGTGATGTGACTAACGACAA+TGG | 0.713243 | 1.2:-58055600 | MS.gene066010:CDS |
| TAACAAGAAACATTCAGACG+AGG | 0.732280 | 1.2:-58056768 | MS.gene066010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTTCTTCAATTAATT+CGG | + | chr1.2:58057398-58057417 | None:intergenic | 10.0% |
| !!! | ATAGTTTTATTCAAAATTAG+AGG | - | chr1.2:58056515-58056534 | MS.gene066010:intron | 15.0% |
| !! | AAACTATAGCACAAATAAAA+AGG | + | chr1.2:58056502-58056521 | None:intergenic | 20.0% |
| !! | ATTAATATGATCAAAGTGAA+TGG | - | chr1.2:58057412-58057431 | MS.gene066010:CDS | 20.0% |
| !! | CAAAATGACAATGTAATTTA+TGG | + | chr1.2:58056625-58056644 | None:intergenic | 20.0% |
| !!! | TTTGACTTCATTTTATCTTT+TGG | + | chr1.2:58056906-58056925 | None:intergenic | 20.0% |
| ! | AATGACAATGTTAACATGTA+TGG | - | chr1.2:58057160-58057179 | MS.gene066010:CDS | 25.0% |
| ! | ATCTAACCTAAAAAAAAGTG+AGG | - | chr1.2:58055718-58055737 | MS.gene066010:CDS | 25.0% |
| ! | TAATTGAGTGGTTATCATAT+AGG | - | chr1.2:58056855-58056874 | MS.gene066010:intron | 25.0% |
| ! | TTATAAACCTTATAGTCGAA+GGG | - | chr1.2:58056216-58056235 | MS.gene066010:CDS | 25.0% |
| ! | TTCAGATATTTGTATCATCA+AGG | - | chr1.2:58055499-58055518 | MS.gene066010:CDS | 25.0% |
| ! | TTGTTATCTTCTTCAAAAGT+AGG | + | chr1.2:58055899-58055918 | None:intergenic | 25.0% |
| !!! | ACTTTTGAAGAAGATAACAA+GGG | - | chr1.2:58055899-58055918 | MS.gene066010:intron | 25.0% |
| !!! | TAAGTAGCTTTGTTTCAATA+GGG | - | chr1.2:58056449-58056468 | MS.gene066010:intron | 25.0% |
| !!! | TACTTTTGAAGAAGATAACA+AGG | - | chr1.2:58055898-58055917 | MS.gene066010:intron | 25.0% |
| !!! | TCTAATTTGTTCATCGATTA+AGG | - | chr1.2:58056672-58056691 | MS.gene066010:intron | 25.0% |
| !!! | TTAAGTAGCTTTGTTTCAAT+AGG | - | chr1.2:58056448-58056467 | MS.gene066010:intron | 25.0% |
| AATAGATTAGACAATGAAGG+AGG | + | chr1.2:58056017-58056036 | None:intergenic | 30.0% | |
| AGAAGAATCAAAATGAAGCA+AGG | - | chr1.2:58056562-58056581 | MS.gene066010:CDS | 30.0% | |
| AGAGATTTCTTCATTATCTC+AGG | - | chr1.2:58056597-58056616 | MS.gene066010:intron | 30.0% | |
| AGCAATAGATTAGACAATGA+AGG | + | chr1.2:58056020-58056039 | None:intergenic | 30.0% | |
| ATCTATTGCTGAACTGTTTA+TGG | - | chr1.2:58056030-58056049 | MS.gene066010:intron | 30.0% | |
| CAAATTAGAGTGAGAAAACT+AGG | + | chr1.2:58056661-58056680 | None:intergenic | 30.0% | |
| CATATTGTGATTATCAGTTC+CGG | + | chr1.2:58055582-58055601 | None:intergenic | 30.0% | |
| CTTATAAACCTTATAGTCGA+AGG | - | chr1.2:58056215-58056234 | MS.gene066010:CDS | 30.0% | |
| GGATAAACAACTTAATTGAG+TGG | - | chr1.2:58056843-58056862 | MS.gene066010:intron | 30.0% | |
| TAATACGCTTAAACAGAATC+AGG | - | chr1.2:58055967-58055986 | MS.gene066010:intron | 30.0% | |
| TACAACAGAAGTTTCTGTTA+AGG | - | chr1.2:58055685-58055704 | MS.gene066010:CDS | 30.0% | |
| TCAGACATGATACTGTTATA+AGG | + | chr1.2:58057022-58057041 | None:intergenic | 30.0% | |
| TTATAACAGTATCATGTCTG+AGG | - | chr1.2:58057021-58057040 | MS.gene066010:CDS | 30.0% | |
| ! | ATTAAGTTGTTTATCCCAAC+AGG | + | chr1.2:58056839-58056858 | None:intergenic | 30.0% |
| ! | TCTGAATGTTTCTTGTTATC+AGG | + | chr1.2:58056158-58056177 | None:intergenic | 30.0% |
| ! | TTAAGTTGTTTATCCCAACA+GGG | + | chr1.2:58056838-58056857 | None:intergenic | 30.0% |
| ! | TTCTTGTTATCAGGTTTCAA+CGG | + | chr1.2:58056149-58056168 | None:intergenic | 30.0% |
| !!! | ACTTCTCCTCACTTTTTTTT+AGG | + | chr1.2:58055727-58055746 | None:intergenic | 30.0% |
| ACCTTCTTCAAGTCAACTTT+AGG | + | chr1.2:58056787-58056806 | None:intergenic | 35.0% | |
| ACTTAAACTTATGCCCTGTT+GGG | - | chr1.2:58056822-58056841 | MS.gene066010:intron | 35.0% | |
| AGAAGTTGCAGTTCTTTACA+TGG | + | chr1.2:58056333-58056352 | None:intergenic | 35.0% | |
| ATCGATTAAGGAAGAGAAAG+AGG | - | chr1.2:58056684-58056703 | MS.gene066010:intron | 35.0% | |
| ATTCATGTTCAGTTGCTTCT+GGG | - | chr1.2:58056186-58056205 | MS.gene066010:CDS | 35.0% | |
| CGGAACTGATAATCACAATA+TGG | - | chr1.2:58055580-58055599 | MS.gene066010:CDS | 35.0% | |
| GGAGGAAGCAAATTCAAAAT+CGG | + | chr1.2:58055999-58056018 | None:intergenic | 35.0% | |
| TAACAAGAAACATTCAGACG+AGG | - | chr1.2:58056160-58056179 | MS.gene066010:CDS | 35.0% | |
| TACTTAAACTTATGCCCTGT+TGG | - | chr1.2:58056821-58056840 | MS.gene066010:intron | 35.0% | |
| TGAATTGTGCGAAATTCCAT+CGG | + | chr1.2:58055549-58055568 | None:intergenic | 35.0% | |
| TTCAAAACCGCACAAAACAA+GGG | - | chr1.2:58055784-58055803 | MS.gene066010:intron | 35.0% | |
| TTCTTCAAGTCAACTTTAGG+TGG | + | chr1.2:58056784-58056803 | None:intergenic | 35.0% | |
| TTTGAAGAAGATAACAAGGG+CGG | - | chr1.2:58055902-58055921 | MS.gene066010:intron | 35.0% | |
| ! | GACTTGAAGAAGGTATGTAA+TGG | - | chr1.2:58056793-58056812 | MS.gene066010:CDS | 35.0% |
| ! | GGTTTTCTTCCCAAATTGAT+CGG | - | chr1.2:58056470-58056489 | MS.gene066010:intron | 35.0% |
| !! | ACCTAAAGTTGACTTGAAGA+AGG | - | chr1.2:58056783-58056802 | MS.gene066010:CDS | 35.0% |
| !! | TTCAATTAATTCGGTGTGCT+CGG | + | chr1.2:58057389-58057408 | None:intergenic | 35.0% |
| AAAGAACTGCAACTTCTGTG+AGG | - | chr1.2:58056336-58056355 | MS.gene066010:intron | 40.0% | |
| AACGGTTTCCTTGGAACTAA+AGG | + | chr1.2:58056131-58056150 | None:intergenic | 40.0% | |
| ACGTGCAAAATCTCCAAAAC+TGG | - | chr1.2:58057198-58057217 | MS.gene066010:CDS | 40.0% | |
| AGAAGTTTCTGTTAAGGCCT+CGG | - | chr1.2:58055691-58055710 | MS.gene066010:CDS | 40.0% | |
| AGAGGAAAAGCAACAAGCAA+TGG | - | chr1.2:58056533-58056552 | MS.gene066010:CDS | 40.0% | |
| AGTGATGTGACTAACGACAA+TGG | - | chr1.2:58057328-58057347 | MS.gene066010:CDS | 40.0% | |
| ATCAAAGTGAATGGACAAGC+GGG | - | chr1.2:58057421-58057440 | MS.gene066010:CDS | 40.0% | |
| CAAAATCTCCAAAACTGGGT+CGG | - | chr1.2:58057203-58057222 | MS.gene066010:CDS | 40.0% | |
| CACAATTCAGGTCATGAAAC+CGG | - | chr1.2:58055560-58055579 | MS.gene066010:CDS | 40.0% | |
| CACATCACTCAAGTTACAAC+TGG | + | chr1.2:58057317-58057336 | None:intergenic | 40.0% | |
| CAGTTCTTTACATGGTCAAG+GGG | + | chr1.2:58056325-58056344 | None:intergenic | 40.0% | |
| CGTGCAAAATCTCCAAAACT+GGG | - | chr1.2:58057199-58057218 | MS.gene066010:CDS | 40.0% | |
| CTTTCAGTTGCTAGGGAAAA+TGG | + | chr1.2:58055854-58055873 | None:intergenic | 40.0% | |
| GAATAGACTACAACACGATC+TGG | + | chr1.2:58055527-58055546 | None:intergenic | 40.0% | |
| GATCAAAGTGAATGGACAAG+CGG | - | chr1.2:58057420-58057439 | MS.gene066010:CDS | 40.0% | |
| GATGGAATTTCGCACAATTC+AGG | - | chr1.2:58055548-58055567 | MS.gene066010:CDS | 40.0% | |
| GATTCATGTTCAGTTGCTTC+TGG | - | chr1.2:58056185-58056204 | MS.gene066010:CDS | 40.0% | |
| GCAGTTCTTTACATGGTCAA+GGG | + | chr1.2:58056326-58056345 | None:intergenic | 40.0% | |
| GTGCAGCTAATTCATCTGAA+GGG | - | chr1.2:58057242-58057261 | MS.gene066010:CDS | 40.0% | |
| GTTCAAAACCGCACAAAACA+AGG | - | chr1.2:58055783-58055802 | MS.gene066010:intron | 40.0% | |
| TAAAGGAGACTTCAACTGCA+AGG | + | chr1.2:58056114-58056133 | None:intergenic | 40.0% | |
| TCAAAACCGCACAAAACAAG+GGG | - | chr1.2:58055785-58055804 | MS.gene066010:intron | 40.0% | |
| TCAAAATGAAGCAAGGAGCA+AGG | - | chr1.2:58056569-58056588 | MS.gene066010:CDS | 40.0% | |
| TCTGAAGGGGTCAAAGAAAA+AGG | - | chr1.2:58057256-58057275 | MS.gene066010:CDS | 40.0% | |
| TGCAGCTAATTCATCTGAAG+GGG | - | chr1.2:58057243-58057262 | MS.gene066010:CDS | 40.0% | |
| TGCAGTTCTTTACATGGTCA+AGG | + | chr1.2:58056327-58056346 | None:intergenic | 40.0% | |
| TTCAAGTCAACTTTAGGTGG+AGG | + | chr1.2:58056781-58056800 | None:intergenic | 40.0% | |
| TTGAGAACACCCTCAAAATC+TGG | + | chr1.2:58055755-58055774 | None:intergenic | 40.0% | |
| TTTGACACCCTTCGACTATA+AGG | + | chr1.2:58056226-58056245 | None:intergenic | 40.0% | |
| ! | AACAGTCTCACAAGTGCTTT+TGG | - | chr1.2:58056960-58056979 | MS.gene066010:intron | 40.0% |
| ! | AAGGAATGCACCGATCAATT+TGG | + | chr1.2:58056483-58056502 | None:intergenic | 40.0% |
| ! | AAGTTGACGCCAGATTTTGA+GGG | - | chr1.2:58055743-58055762 | MS.gene066010:CDS | 40.0% |
| ! | AGGAATGCACCGATCAATTT+GGG | + | chr1.2:58056482-58056501 | None:intergenic | 40.0% |
| ! | CATTTTCCCTAGCAACTGAA+AGG | - | chr1.2:58055852-58055871 | MS.gene066010:intron | 40.0% |
| ! | TAGTTCAGAAGAGAGCACAA+AGG | - | chr1.2:58055643-58055662 | MS.gene066010:CDS | 40.0% |
| ! | TGAAGTCTCCTTTAGTTCCA+AGG | - | chr1.2:58056120-58056139 | MS.gene066010:intron | 40.0% |
| ! | TTTGGAGATTTTGCACGTGT+GGG | + | chr1.2:58057196-58057215 | None:intergenic | 40.0% |
| !! | TTTTGGAGATTTTGCACGTG+TGG | + | chr1.2:58057197-58057216 | None:intergenic | 40.0% |
| !!! | TGATTACCCCTTGTTTTGTG+CGG | + | chr1.2:58055794-58055813 | None:intergenic | 40.0% |
| !!! | TTTTAGGTTAGATACGTCCG+AGG | + | chr1.2:58055711-58055730 | None:intergenic | 40.0% |
| AAGCCATCAAACAGTTGAGG+AGG | - | chr1.2:58056707-58056726 | MS.gene066010:intron | 45.0% | |
| ACTCCTCCTCAACTGTTTGA+TGG | + | chr1.2:58056713-58056732 | None:intergenic | 45.0% | |
| AGGAAGCCATCAAACAGTTG+AGG | - | chr1.2:58056704-58056723 | MS.gene066010:intron | 45.0% | |
| AGGGGTCAAAGAAAAAGGAG+CGG | - | chr1.2:58057261-58057280 | MS.gene066010:CDS | 45.0% | |
| CACAAAGGAATACGAGGTGA+AGG | - | chr1.2:58055658-58055677 | MS.gene066010:CDS | 45.0% | |
| CGTGGTAAAAGCTTGGCATA+GGG | + | chr1.2:58056753-58056772 | None:intergenic | 45.0% | |
| CGTGTTGTAGTCTATTCCGA+TGG | - | chr1.2:58055530-58055549 | MS.gene066010:CDS | 45.0% | |
| GAAGATAACAAGGGCGGTAA+TGG | - | chr1.2:58055908-58055927 | MS.gene066010:intron | 45.0% | |
| GGTGCAGCTAATTCATCTGA+AGG | - | chr1.2:58057241-58057260 | MS.gene066010:CDS | 45.0% | |
| TCAGGTTTCAACGGTTTCCT+TGG | + | chr1.2:58056140-58056159 | None:intergenic | 45.0% | |
| TCGTGGTAAAAGCTTGGCAT+AGG | + | chr1.2:58056754-58056773 | None:intergenic | 45.0% | |
| TGAACGCGCACAAAGAAGAA+AGG | - | chr1.2:58056409-58056428 | MS.gene066010:CDS | 45.0% | |
| TGTGACTAACGACAATGGCT+TGG | - | chr1.2:58057333-58057352 | MS.gene066010:CDS | 45.0% | |
| TTGCTTCTGCTCCAAGCTTT+CGG | - | chr1.2:58056381-58056400 | MS.gene066010:CDS | 45.0% | |
| ! | ACTAACGACAATGGCTTGGA+TGG | - | chr1.2:58057337-58057356 | MS.gene066010:CDS | 45.0% |
| ! | AGAGAGCACAAAGGAATACG+AGG | - | chr1.2:58055652-58055671 | MS.gene066010:CDS | 45.0% |
| ! | ATGCCAAGCTTTTACCACGA+GGG | - | chr1.2:58056754-58056773 | MS.gene066010:CDS | 45.0% |
| ! | GAAGTTGACGCCAGATTTTG+AGG | - | chr1.2:58055742-58055761 | MS.gene066010:CDS | 45.0% |
| ! | TATGCCAAGCTTTTACCACG+AGG | - | chr1.2:58056753-58056772 | MS.gene066010:CDS | 45.0% |
| ! | TGTGAGGTCTTTCAAGTCCA+GGG | - | chr1.2:58056352-58056371 | MS.gene066010:intron | 45.0% |
| ACGCGCACAAAGAAGAAAGG+AGG | - | chr1.2:58056412-58056431 | MS.gene066010:CDS | 50.0% | |
| AGCACGCCTTTCAGTTGCTA+GGG | + | chr1.2:58055861-58055880 | None:intergenic | 50.0% | |
| GAAAATGGTCGCGGAACTGT+AGG | + | chr1.2:58055839-58055858 | None:intergenic | 50.0% | |
| GTAGGCTTGACAGTATCTCG+TGG | + | chr1.2:58055821-58055840 | None:intergenic | 50.0% | |
| GTTGCTAGGGAAAATGGTCG+CGG | + | chr1.2:58055848-58055867 | None:intergenic | 50.0% | |
| TAGCACGCCTTTCAGTTGCT+AGG | + | chr1.2:58055862-58055881 | None:intergenic | 50.0% | |
| ! | CTGTGAGGTCTTTCAAGTCC+AGG | - | chr1.2:58056351-58056370 | MS.gene066010:intron | 50.0% |
| ! | TGCCAAGCTTTTACCACGAG+GGG | - | chr1.2:58056755-58056774 | MS.gene066010:CDS | 50.0% |
| AGCAGAAGCAACAGTTGCCC+TGG | + | chr1.2:58056372-58056391 | None:intergenic | 55.0% | |
| CGTTCAGTCGACCGAAAGCT+TGG | + | chr1.2:58056395-58056414 | None:intergenic | 55.0% | |
| ! | CTCTTTCGCCGACCCAGTTT+TGG | + | chr1.2:58057214-58057233 | None:intergenic | 55.0% |
| ! | GGAGATTTTGCACGTGTGGG+TGG | + | chr1.2:58057193-58057212 | None:intergenic | 55.0% |
| GGCCCCTCGTGGTAAAAGCT+TGG | + | chr1.2:58056760-58056779 | None:intergenic | 60.0% | |
| GGTCGGCGAAAGAGCAACAG+CGG | - | chr1.2:58057220-58057239 | MS.gene066010:CDS | 60.0% | |
| TTGCACGTGTGGGTGGTAGC+TGG | + | chr1.2:58057186-58057205 | None:intergenic | 60.0% | |
| CTTTAGGTGGAGGCCCCTCG+TGG | + | chr1.2:58056771-58056790 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 58055485 | 58057465 | 58055485 | ID=MS.gene066010 |
| chr1.2 | mRNA | 58055485 | 58057465 | 58055485 | ID=MS.gene066010.t1;Parent=MS.gene066010 |
| chr1.2 | exon | 58056962 | 58057465 | 58056962 | ID=MS.gene066010.t1.exon1;Parent=MS.gene066010.t1 |
| chr1.2 | CDS | 58056962 | 58057465 | 58056962 | ID=cds.MS.gene066010.t1;Parent=MS.gene066010.t1 |
| chr1.2 | exon | 58056743 | 58056831 | 58056743 | ID=MS.gene066010.t1.exon2;Parent=MS.gene066010.t1 |
| chr1.2 | CDS | 58056743 | 58056831 | 58056743 | ID=cds.MS.gene066010.t1;Parent=MS.gene066010.t1 |
| chr1.2 | exon | 58056517 | 58056610 | 58056517 | ID=MS.gene066010.t1.exon3;Parent=MS.gene066010.t1 |
| chr1.2 | CDS | 58056517 | 58056610 | 58056517 | ID=cds.MS.gene066010.t1;Parent=MS.gene066010.t1 |
| chr1.2 | exon | 58056360 | 58056431 | 58056360 | ID=MS.gene066010.t1.exon4;Parent=MS.gene066010.t1 |
| chr1.2 | CDS | 58056360 | 58056431 | 58056360 | ID=cds.MS.gene066010.t1;Parent=MS.gene066010.t1 |
| chr1.2 | exon | 58056146 | 58056256 | 58056146 | ID=MS.gene066010.t1.exon5;Parent=MS.gene066010.t1 |
| chr1.2 | CDS | 58056146 | 58056256 | 58056146 | ID=cds.MS.gene066010.t1;Parent=MS.gene066010.t1 |
| chr1.2 | exon | 58055485 | 58055763 | 58055485 | ID=MS.gene066010.t1.exon6;Parent=MS.gene066010.t1 |
| chr1.2 | CDS | 58055485 | 58055763 | 58055485 | ID=cds.MS.gene066010.t1;Parent=MS.gene066010.t1 |
| Gene Sequence |
| Protein sequence |
