Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49209.t1 | XP_003615846.2 | 90.2 | 367 | 8 | 1 | 1 | 339 | 140 | 506 | 1.30E-186 | 662.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49209.t1 | O65782 | 46.0 | 363 | 166 | 5 | 3 | 336 | 138 | 499 | 3.9e-86 | 319.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49209.t1 | G7JZM8 | 90.2 | 367 | 8 | 1 | 1 | 339 | 140 | 506 | 9.7e-187 | 662.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene49209 | -0.823298 | 1.49E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene49209 | -0.818163 | 2.26E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene49209 | -0.809454 | 1.88E-50 | -1.69E-46 |
| MS.gene049281 | MS.gene49209 | 0.815941 | 7.14E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene49209 | -0.811512 | 6.75E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene49209 | -0.824257 | 8.90E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene49209 | -0.811161 | 8.04E-51 | -1.69E-46 |
| MS.gene050165 | MS.gene49209 | -0.818659 | 1.75E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene49209 | -0.807912 | 4.01E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene49209 | 0.813655 | 2.29E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene49209 | 0.827694 | 1.36E-54 | -1.69E-46 |
| MS.gene050444 | MS.gene49209 | -0.804324 | 2.28E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene49209 | -0.837723 | 4.39E-57 | -1.69E-46 |
| MS.gene050577 | MS.gene49209 | -0.810782 | 9.71E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene49209 | -0.827576 | 1.45E-54 | -1.69E-46 |
| MS.gene050809 | MS.gene49209 | 0.818413 | 1.99E-52 | -1.69E-46 |
| MS.gene050832 | MS.gene49209 | 0.837079 | 6.42E-57 | -1.69E-46 |
| MS.gene050833 | MS.gene49209 | 0.857705 | 1.36E-62 | -1.69E-46 |
| MS.gene050868 | MS.gene49209 | -0.805857 | 1.09E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene49209 | -0.805016 | 1.64E-49 | -1.69E-46 |
| MS.gene050883 | MS.gene49209 | 0.804481 | 2.12E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene49209 | 0.801149 | 1.03E-48 | -1.69E-46 |
| MS.gene051138 | MS.gene49209 | 0.80585 | 1.09E-49 | -1.69E-46 |
| MS.gene051422 | MS.gene49209 | 0.812345 | 4.44E-51 | -1.69E-46 |
| MS.gene051863 | MS.gene49209 | 0.809687 | 1.67E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene49209 | -0.817918 | 2.57E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene49209 | 0.811382 | 7.20E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene49209 | -0.817624 | 2.99E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene49209 | -0.805319 | 1.41E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene49209 | -0.819 | 1.46E-52 | -1.69E-46 |
| MS.gene054706 | MS.gene49209 | 0.844901 | 5.67E-59 | -1.69E-46 |
| MS.gene05470 | MS.gene49209 | -0.821705 | 3.50E-53 | -1.69E-46 |
| MS.gene054954 | MS.gene49209 | -0.817452 | 3.27E-52 | -1.69E-46 |
| MS.gene055154 | MS.gene49209 | 0.816793 | 4.60E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene49209 | -0.809667 | 1.69E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene49209 | -0.812235 | 4.69E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene49209 | -0.851106 | 1.10E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene49209 | -0.829735 | 4.36E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene49209 | -0.801284 | 9.68E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene49209 | -0.820667 | 6.08E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene49209 | -0.815961 | 7.07E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene49209 | -0.831464 | 1.64E-55 | -1.69E-46 |
| MS.gene056856 | MS.gene49209 | 0.819951 | 8.87E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene49209 | -0.814923 | 1.20E-51 | -1.69E-46 |
| MS.gene058093 | MS.gene49209 | 0.802241 | 6.16E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene49209 | 0.819874 | 9.23E-53 | -1.69E-46 |
| MS.gene058268 | MS.gene49209 | 0.808219 | 3.45E-50 | -1.69E-46 |
| MS.gene058269 | MS.gene49209 | 0.800253 | 1.57E-48 | -1.69E-46 |
| MS.gene058419 | MS.gene49209 | -0.824047 | 9.98E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene49209 | -0.821373 | 4.18E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene49209 | -0.816189 | 6.29E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene49209 | -0.817978 | 2.49E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene49209 | -0.806249 | 9.02E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene49209 | -0.835676 | 1.46E-56 | -1.69E-46 |
| MS.gene059682 | MS.gene49209 | 0.81179 | 5.87E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene49209 | -0.823148 | 1.62E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene49209 | -0.813293 | 2.75E-51 | -1.69E-46 |
| MS.gene060405 | MS.gene49209 | 0.831748 | 1.40E-55 | -1.69E-46 |
| MS.gene060694 | MS.gene49209 | 0.804016 | 2.64E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene49209 | -0.825863 | 3.72E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene49209 | -0.80185 | 7.41E-49 | -1.69E-46 |
| MS.gene060823 | MS.gene49209 | 0.828748 | 7.57E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAAATTGTTCAAGATTT+TGG | 0.121944 | 5.4:+61276766 | MS.gene49209:CDS |
| GGAGGCAACTTCTTCCTATT+TGG | 0.196631 | 5.4:-61276827 | None:intergenic |
| TTTATAACTGCCTTGAAATA+TGG | 0.212768 | 5.4:-61278103 | None:intergenic |
| ATCTTCTCTATTTGTTTGAT+TGG | 0.275514 | 5.4:+61278422 | MS.gene49209:CDS |
| CAATTGCAGCCGCGGTAGTT+TGG | 0.290989 | 5.4:+61277969 | MS.gene49209:CDS |
| ATAGACATTGATGGTCTTCC+AGG | 0.292962 | 5.4:+61278475 | MS.gene49209:CDS |
| CCTTGAAATATGGAAGCTTT+TGG | 0.305033 | 5.4:-61278093 | None:intergenic |
| GAGTTGATTCCGTTTGGTTC+GGG | 0.308337 | 5.4:+61278340 | MS.gene49209:CDS |
| CTCTCAGGATAAAACTCTTC+TGG | 0.310033 | 5.4:-61278277 | None:intergenic |
| TCTGGATTCTTCCATGCTTC+CGG | 0.312645 | 5.4:-61278259 | None:intergenic |
| TCTTCCCACTTTACTCCTTC+AGG | 0.317650 | 5.4:-61278451 | None:intergenic |
| CGAGTTGATTCCGTTTGGTT+CGG | 0.324620 | 5.4:+61278339 | MS.gene49209:CDS |
| GGTAGTGATATAGATTTAAA+AGG | 0.339485 | 5.4:+61278307 | MS.gene49209:CDS |
| ATGCAAATTAACAACTTTGT+TGG | 0.344100 | 5.4:-61276543 | None:intergenic |
| TCCATGCTTCCGGATCTCTA+TGG | 0.347665 | 5.4:-61278249 | None:intergenic |
| AATTGCAGCCGCGGTAGTTT+GGG | 0.355442 | 5.4:+61277970 | MS.gene49209:CDS |
| TGTACTTTCTGCATCACTCT+TGG | 0.356672 | 5.4:-61278016 | None:intergenic |
| GTAGGACCGCGTTCGGTAGA+AGG | 0.381061 | 5.4:+61276600 | MS.gene49209:CDS |
| TCTTCTCTATTTGTTTGATT+GGG | 0.386580 | 5.4:+61278423 | MS.gene49209:CDS |
| ATGAACATCTTGATCCAAAT+AGG | 0.419740 | 5.4:+61276813 | MS.gene49209:CDS |
| ATGTACACCAATGTCTTGTC+TGG | 0.433281 | 5.4:-61278211 | None:intergenic |
| CGTTTCTCTTGGTAAAAGTA+CGG | 0.440554 | 5.4:-61278155 | None:intergenic |
| CCAAAAGCTTCCATATTTCA+AGG | 0.440792 | 5.4:+61278093 | MS.gene49209:CDS |
| TTCTTATGTTGGACAAGTCC+TGG | 0.444807 | 5.4:-61278493 | None:intergenic |
| TTGCTAAGAAGAGGATTGAA+TGG | 0.451267 | 5.4:+61278533 | MS.gene49209:CDS |
| TGATTTGCTTAAAGAAGCTC+AGG | 0.463331 | 5.4:+61276658 | MS.gene49209:CDS |
| GATTTCGAGTTGATTCCGTT+TGG | 0.474023 | 5.4:+61278334 | MS.gene49209:CDS |
| GAGATTCGAAAAGCATATGA+AGG | 0.476318 | 5.4:+61278043 | MS.gene49209:CDS |
| AGCAATTGCCATGTTTAAGC+CGG | 0.480593 | 5.4:-61278377 | None:intergenic |
| TGGGAAGATATAGACATTGA+TGG | 0.490301 | 5.4:+61278466 | MS.gene49209:CDS |
| TGCTAAGAAGAGGATTGAAT+GGG | 0.491572 | 5.4:+61278534 | MS.gene49209:CDS |
| TCACTACCTATGAATCTCTC+AGG | 0.493509 | 5.4:-61278292 | None:intergenic |
| GTTTCTCTTGGTAAAAGTAC+GGG | 0.494433 | 5.4:-61278154 | None:intergenic |
| TCAACAATCCCTCCAACAAA+AGG | 0.502167 | 5.4:-61276716 | None:intergenic |
| TAACAAGCGCGGTAGTTTGT+AGG | 0.503454 | 5.4:+61276582 | MS.gene49209:CDS |
| TCGGGGCGAAGAGTTTGTCC+CGG | 0.520417 | 5.4:+61278358 | MS.gene49209:CDS |
| TTGCAGAATATGTTGTTGGC+GGG | 0.523030 | 5.4:+61277938 | MS.gene49209:intron |
| GCAATTGCCATGTTTAAGCC+GGG | 0.526188 | 5.4:-61278376 | None:intergenic |
| GGGATTGTTGATAAGTTCAC+CGG | 0.528273 | 5.4:+61276728 | MS.gene49209:CDS |
| TCCATAGAGATCCGGAAGCA+TGG | 0.530665 | 5.4:+61278248 | MS.gene49209:CDS |
| AATATTGCAGAATATGTTGT+TGG | 0.531690 | 5.4:+61277934 | MS.gene49209:intron |
| CTCAAGACGACTCATCAATC+CGG | 0.536653 | 5.4:-61276747 | None:intergenic |
| ACTCTTCGCCCCGAACCAAA+CGG | 0.538698 | 5.4:-61278349 | None:intergenic |
| GTAGTTTGTAGGACCGCGTT+CGG | 0.540541 | 5.4:+61276593 | MS.gene49209:CDS |
| TCGAAAAGCATATGAAGGGA+AGG | 0.546986 | 5.4:+61278048 | MS.gene49209:CDS |
| TCTGCCTTGTTGCTAAGAAG+AGG | 0.551562 | 5.4:+61278524 | MS.gene49209:CDS |
| GTGGGCAATCCATAGAGATC+CGG | 0.558202 | 5.4:+61278240 | MS.gene49209:CDS |
| ATTGCAGAATATGTTGTTGG+CGG | 0.558698 | 5.4:+61277937 | MS.gene49209:intron |
| CAATCCTCTTCTTAGCAACA+AGG | 0.564827 | 5.4:-61278528 | None:intergenic |
| GGTAAAAGTACGGGTAATGA+CGG | 0.566518 | 5.4:-61278145 | None:intergenic |
| AGAGAAGATTAGCAAGTACA+AGG | 0.571126 | 5.4:-61278408 | None:intergenic |
| CGAAAAGCATATGAAGGGAA+GGG | 0.571461 | 5.4:+61278049 | MS.gene49209:CDS |
| AAACATGGCAATTGCTACTG+TGG | 0.581106 | 5.4:+61278384 | MS.gene49209:CDS |
| AGTTTGTCCCGGCTTAAACA+TGG | 0.587498 | 5.4:+61278369 | MS.gene49209:CDS |
| AAATGCCTGAAGGAGTAAAG+TGG | 0.595294 | 5.4:+61278446 | MS.gene49209:CDS |
| GTAAAAGTACGGGTAATGAC+GGG | 0.599418 | 5.4:-61278144 | None:intergenic |
| AGTTGATTCCGTTTGGTTCG+GGG | 0.604817 | 5.4:+61278341 | MS.gene49209:CDS |
| AACAGACACAATTGCAGCCG+CGG | 0.615000 | 5.4:+61277961 | MS.gene49209:CDS |
| CATTGGTGTACATTAACGCG+TGG | 0.625542 | 5.4:+61278221 | MS.gene49209:CDS |
| AGATTCGAAAAGCATATGAA+GGG | 0.628912 | 5.4:+61278044 | MS.gene49209:CDS |
| ATTACATCATCTTCATGTGG+AGG | 0.631867 | 5.4:-61276845 | None:intergenic |
| TGAAATTCCAGACAAGACAT+TGG | 0.643008 | 5.4:+61278204 | MS.gene49209:CDS |
| AATGCCTGAAGGAGTAAAGT+GGG | 0.643490 | 5.4:+61278447 | MS.gene49209:CDS |
| TTCTTAGCAACAAGGCAGAG+AGG | 0.645640 | 5.4:-61278520 | None:intergenic |
| TCAATTACATCATCTTCATG+TGG | 0.646545 | 5.4:-61276848 | None:intergenic |
| TTCAAACCTTCTACCGAACG+CGG | 0.655606 | 5.4:-61276606 | None:intergenic |
| TTTGATTGGGAAATGCCTGA+AGG | 0.671401 | 5.4:+61278436 | MS.gene49209:CDS |
| ATTGGTGTACATTAACGCGT+GGG | 0.680399 | 5.4:+61278222 | MS.gene49209:CDS |
| TCTCATGTGTCTAACAAGCG+CGG | 0.701793 | 5.4:+61276571 | MS.gene49209:CDS |
| AGTCATAGCCCAAACTACCG+CGG | 0.723455 | 5.4:-61277978 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCTTGTTAATATTTATATT+TGG | + | chr5.4:61277669-61277688 | MS.gene49209:intron | 15.0% |
| !! | GTACATAATACTAATATTTA+TGG | - | chr5.4:61277803-61277822 | None:intergenic | 15.0% |
| !! | AAAAAAATTAACCATGATCA+AGG | - | chr5.4:61276939-61276958 | None:intergenic | 20.0% |
| !! | AAAAAATTAACCATGATCAA+GGG | - | chr5.4:61276938-61276957 | None:intergenic | 20.0% |
| !! | TAAAAATTGAACCAAGATTA+AGG | - | chr5.4:61277000-61277019 | None:intergenic | 20.0% |
| !! | TATCTCAAAATCTAAATACA+TGG | + | chr5.4:61277909-61277928 | MS.gene49209:intron | 20.0% |
| !!! | AGAAGAAAAAAGAGTATTAT+AGG | - | chr5.4:61277889-61277908 | None:intergenic | 20.0% |
| !!! | AGTCACTATCTTTTTTTTTT+GGG | + | chr5.4:61277572-61277591 | MS.gene49209:intron | 20.0% |
| !!! | ATTAAAACTAGAGATTTTGA+TGG | - | chr5.4:61277379-61277398 | None:intergenic | 20.0% |
| !!! | TAGTCACTATCTTTTTTTTT+TGG | + | chr5.4:61277571-61277590 | MS.gene49209:intron | 20.0% |
| !!! | TTTGTTATGTTTGTTTACAT+TGG | + | chr5.4:61277300-61277319 | MS.gene49209:intron | 20.0% |
| !!! | TTTTTCTTATAGTTGAGATT+TGG | + | chr5.4:61277247-61277266 | MS.gene49209:intron | 20.0% |
| ! | AATATTGCAGAATATGTTGT+TGG | + | chr5.4:61277934-61277953 | MS.gene49209:intron | 25.0% |
| ! | ATCTTCTCTATTTGTTTGAT+TGG | + | chr5.4:61278422-61278441 | MS.gene49209:CDS | 25.0% |
| ! | ATGCAAATTAACAACTTTGT+TGG | - | chr5.4:61276546-61276565 | None:intergenic | 25.0% |
| ! | GGTAGTGATATAGATTTAAA+AGG | + | chr5.4:61278307-61278326 | MS.gene49209:CDS | 25.0% |
| ! | GTAAACAAACATAACAAACT+TGG | - | chr5.4:61277298-61277317 | None:intergenic | 25.0% |
| ! | TAGAGTTAGTTAATATCAGT+TGG | + | chr5.4:61277726-61277745 | MS.gene49209:intron | 25.0% |
| ! | TAGATTAACTCAACAGTTTA+GGG | - | chr5.4:61277073-61277092 | None:intergenic | 25.0% |
| ! | TCTTCTCTATTTGTTTGATT+GGG | + | chr5.4:61278423-61278442 | MS.gene49209:CDS | 25.0% |
| ! | TTAGATTAACTCAACAGTTT+AGG | - | chr5.4:61277074-61277093 | None:intergenic | 25.0% |
| ! | TTTATAACTGCCTTGAAATA+TGG | - | chr5.4:61278106-61278125 | None:intergenic | 25.0% |
| !! | AAATTGTTCAAGATTTTGGA+TGG | + | chr5.4:61276770-61276789 | MS.gene49209:CDS | 25.0% |
| !! | TGAGAAATTGTTCAAGATTT+TGG | + | chr5.4:61276766-61276785 | MS.gene49209:CDS | 25.0% |
| !!! | CAAAGTTGCTATTTATTACT+AGG | + | chr5.4:61277420-61277439 | MS.gene49209:intron | 25.0% |
| !!! | TGTTAGAATTTTGATCTCTA+TGG | + | chr5.4:61277340-61277359 | MS.gene49209:intron | 25.0% |
| AGAAATTTCCATAGATCAAG+TGG | - | chr5.4:61277651-61277670 | None:intergenic | 30.0% | |
| ATGAACATCTTGATCCAAAT+AGG | + | chr5.4:61276813-61276832 | MS.gene49209:CDS | 30.0% | |
| TCAATTACATCATCTTCATG+TGG | - | chr5.4:61276851-61276870 | None:intergenic | 30.0% | |
| ! | AGAGAGGATTTTTCTTATGT+TGG | - | chr5.4:61278507-61278526 | None:intergenic | 30.0% |
| ! | AGATTCGAAAAGCATATGAA+GGG | + | chr5.4:61278044-61278063 | MS.gene49209:CDS | 30.0% |
| ! | ATAGTTGAGATTTGGTTAGA+GGG | + | chr5.4:61277255-61277274 | MS.gene49209:intron | 30.0% |
| ! | ATTATTTGCCTTTTGTTGGA+GGG | + | chr5.4:61276708-61276727 | MS.gene49209:CDS | 30.0% |
| ! | TATAGTTGAGATTTGGTTAG+AGG | + | chr5.4:61277254-61277273 | MS.gene49209:intron | 30.0% |
| ! | TTTTATCCTGAGAGATTCAT+AGG | + | chr5.4:61278286-61278305 | MS.gene49209:CDS | 30.0% |
| !!! | GATTTGTCTCTTTTGTTGTT+TGG | + | chr5.4:61277461-61277480 | MS.gene49209:intron | 30.0% |
| AGAGAAGATTAGCAAGTACA+AGG | - | chr5.4:61278411-61278430 | None:intergenic | 35.0% | |
| ATTACATCATCTTCATGTGG+AGG | - | chr5.4:61276848-61276867 | None:intergenic | 35.0% | |
| ATTGCAGAATATGTTGTTGG+CGG | + | chr5.4:61277937-61277956 | MS.gene49209:intron | 35.0% | |
| ATTTCCATAGATCAAGTGGA+CGG | - | chr5.4:61277647-61277666 | None:intergenic | 35.0% | |
| CCAAAAGCTTCCATATTTCA+AGG | + | chr5.4:61278093-61278112 | MS.gene49209:CDS | 35.0% | |
| CGTTTCTCTTGGTAAAAGTA+CGG | - | chr5.4:61278158-61278177 | None:intergenic | 35.0% | |
| CTCTTAGTAAGCCTTAATCT+TGG | + | chr5.4:61276986-61277005 | MS.gene49209:intron | 35.0% | |
| TGAAATTCCAGACAAGACAT+TGG | + | chr5.4:61278204-61278223 | MS.gene49209:CDS | 35.0% | |
| TGCTAAGAAGAGGATTGAAT+GGG | + | chr5.4:61278534-61278553 | MS.gene49209:CDS | 35.0% | |
| TGGGAAGATATAGACATTGA+TGG | + | chr5.4:61278466-61278485 | MS.gene49209:CDS | 35.0% | |
| TTATAGGCTTATAGCTCAAG+TGG | - | chr5.4:61277873-61277892 | None:intergenic | 35.0% | |
| TTGCTAAGAAGAGGATTGAA+TGG | + | chr5.4:61278533-61278552 | MS.gene49209:CDS | 35.0% | |
| ! | CCTTGAAATATGGAAGCTTT+TGG | - | chr5.4:61278096-61278115 | None:intergenic | 35.0% |
| ! | GACGATTTCGTTCTTTTACA+CGG | + | chr5.4:61276685-61276704 | MS.gene49209:CDS | 35.0% |
| ! | GAGATTCGAAAAGCATATGA+AGG | + | chr5.4:61278043-61278062 | MS.gene49209:CDS | 35.0% |
| ! | GATTATTTGCCTTTTGTTGG+AGG | + | chr5.4:61276707-61276726 | MS.gene49209:CDS | 35.0% |
| ! | GTTTCTCTTGGTAAAAGTAC+GGG | - | chr5.4:61278157-61278176 | None:intergenic | 35.0% |
| ! | TAGTTGAGATTTGGTTAGAG+GGG | + | chr5.4:61277256-61277275 | MS.gene49209:intron | 35.0% |
| !! | ACGGATTATTTGCCTTTTGT+TGG | + | chr5.4:61276704-61276723 | MS.gene49209:CDS | 35.0% |
| !! | ATTTTGATGGAAAGAGATGC+AGG | - | chr5.4:61277366-61277385 | None:intergenic | 35.0% |
| !! | TGATTTGCTTAAAGAAGCTC+AGG | + | chr5.4:61276658-61276677 | MS.gene49209:CDS | 35.0% |
| !! | TTTTTGGGAAACTCTGTATC+CGG | + | chr5.4:61277587-61277606 | MS.gene49209:intron | 35.0% |
| !!! | CACTTTTTCATCGTTTCTCT+TGG | - | chr5.4:61278169-61278188 | None:intergenic | 35.0% |
| !!! | GTACTGTCTTGTCTCTTTTT+TGG | + | chr5.4:61277517-61277536 | MS.gene49209:intron | 35.0% |
| AAACATGGCAATTGCTACTG+TGG | + | chr5.4:61278384-61278403 | MS.gene49209:CDS | 40.0% | |
| AAATGCCTGAAGGAGTAAAG+TGG | + | chr5.4:61278446-61278465 | MS.gene49209:CDS | 40.0% | |
| AATGCCTGAAGGAGTAAAGT+GGG | + | chr5.4:61278447-61278466 | MS.gene49209:CDS | 40.0% | |
| ACACATCAAACCCTTGATCA+TGG | + | chr5.4:61276925-61276944 | MS.gene49209:intron | 40.0% | |
| AGCAATTGCCATGTTTAAGC+CGG | - | chr5.4:61278380-61278399 | None:intergenic | 40.0% | |
| ATGTACACCAATGTCTTGTC+TGG | - | chr5.4:61278214-61278233 | None:intergenic | 40.0% | |
| ATTAGACCCCTCGAATTAGT+CGG | - | chr5.4:61277620-61277639 | None:intergenic | 40.0% | |
| ATTGGTGTACATTAACGCGT+GGG | + | chr5.4:61278222-61278241 | MS.gene49209:CDS | 40.0% | |
| CAATCCTCTTCTTAGCAACA+AGG | - | chr5.4:61278531-61278550 | None:intergenic | 40.0% | |
| CTCTCAGGATAAAACTCTTC+TGG | - | chr5.4:61278280-61278299 | None:intergenic | 40.0% | |
| GAATGATCCTTACTGCTCAA+TGG | + | chr5.4:61276889-61276908 | MS.gene49209:intron | 40.0% | |
| TCAACAATCCCTCCAACAAA+AGG | - | chr5.4:61276719-61276738 | None:intergenic | 40.0% | |
| TCAATGACCGACTAATTCGA+GGG | + | chr5.4:61277610-61277629 | MS.gene49209:intron | 40.0% | |
| TCACTACCTATGAATCTCTC+AGG | - | chr5.4:61278295-61278314 | None:intergenic | 40.0% | |
| TGTACTTTCTGCATCACTCT+TGG | - | chr5.4:61278019-61278038 | None:intergenic | 40.0% | |
| TTCTTATGTTGGACAAGTCC+TGG | - | chr5.4:61278496-61278515 | None:intergenic | 40.0% | |
| TTGCAGAATATGTTGTTGGC+GGG | + | chr5.4:61277938-61277957 | MS.gene49209:intron | 40.0% | |
| TTTGATTGGGAAATGCCTGA+AGG | + | chr5.4:61278436-61278455 | MS.gene49209:CDS | 40.0% | |
| ! | ACGTGTCGTAATGTTTTCCT+CGG | + | chr5.4:61276466-61276485 | MS.gene49209:CDS | 40.0% |
| ! | ATAGACATTGATGGTCTTCC+AGG | + | chr5.4:61278475-61278494 | MS.gene49209:CDS | 40.0% |
| ! | ATGAAAAAGTGCGACATCGA+AGG | + | chr5.4:61278178-61278197 | MS.gene49209:CDS | 40.0% |
| ! | CGAAAAGCATATGAAGGGAA+GGG | + | chr5.4:61278049-61278068 | MS.gene49209:CDS | 40.0% |
| ! | GGGATTGTTGATAAGTTCAC+CGG | + | chr5.4:61276728-61276747 | MS.gene49209:CDS | 40.0% |
| ! | GGTAAAAGTACGGGTAATGA+CGG | - | chr5.4:61278148-61278167 | None:intergenic | 40.0% |
| ! | GTAAAAGTACGGGTAATGAC+GGG | - | chr5.4:61278147-61278166 | None:intergenic | 40.0% |
| ! | TCGAAAAGCATATGAAGGGA+AGG | + | chr5.4:61278048-61278067 | MS.gene49209:CDS | 40.0% |
| ! | TGAAAAAGTGCGACATCGAA+GGG | + | chr5.4:61278179-61278198 | MS.gene49209:CDS | 40.0% |
| ! | TGTCTCGTATTTTCTAACCG+AGG | - | chr5.4:61276486-61276505 | None:intergenic | 40.0% |
| !! | GATTTCGAGTTGATTCCGTT+TGG | + | chr5.4:61278334-61278353 | MS.gene49209:CDS | 40.0% |
| !! | TGAAGGGAAGGGTTTTATAG+AGG | + | chr5.4:61278060-61278079 | MS.gene49209:CDS | 40.0% |
| !!! | CTCTTTTTTGGTTCTAGCCT+TGG | + | chr5.4:61277529-61277548 | MS.gene49209:intron | 40.0% |
| AGTTTGTCCCGGCTTAAACA+TGG | + | chr5.4:61278369-61278388 | MS.gene49209:CDS | 45.0% | |
| CAATGACCGACTAATTCGAG+GGG | + | chr5.4:61277611-61277630 | MS.gene49209:intron | 45.0% | |
| CATTGGTGTACATTAACGCG+TGG | + | chr5.4:61278221-61278240 | MS.gene49209:CDS | 45.0% | |
| CGAATTAGTCGGTCATTGAC+CGG | - | chr5.4:61277609-61277628 | None:intergenic | 45.0% | |
| CTCAAGACGACTCATCAATC+CGG | - | chr5.4:61276750-61276769 | None:intergenic | 45.0% | |
| CTGAGATCCATTGAGCAGTA+AGG | - | chr5.4:61276899-61276918 | None:intergenic | 45.0% | |
| GCAATTGCCATGTTTAAGCC+GGG | - | chr5.4:61278379-61278398 | None:intergenic | 45.0% | |
| GGAGGCAACTTCTTCCTATT+TGG | - | chr5.4:61276830-61276849 | None:intergenic | 45.0% | |
| GTCAATGACCGACTAATTCG+AGG | + | chr5.4:61277609-61277628 | MS.gene49209:intron | 45.0% | |
| TCTCATGTGTCTAACAAGCG+CGG | + | chr5.4:61276571-61276590 | MS.gene49209:CDS | 45.0% | |
| TCTGGATTCTTCCATGCTTC+CGG | - | chr5.4:61278262-61278281 | None:intergenic | 45.0% | |
| TCTTCCCACTTTACTCCTTC+AGG | - | chr5.4:61278454-61278473 | None:intergenic | 45.0% | |
| TTCAAACCTTCTACCGAACG+CGG | - | chr5.4:61276609-61276628 | None:intergenic | 45.0% | |
| TTCTTAGCAACAAGGCAGAG+AGG | - | chr5.4:61278523-61278542 | None:intergenic | 45.0% | |
| ! | AGTTGATTCCGTTTGGTTCG+GGG | + | chr5.4:61278341-61278360 | MS.gene49209:CDS | 45.0% |
| ! | GAGTTGATTCCGTTTGGTTC+GGG | + | chr5.4:61278340-61278359 | MS.gene49209:CDS | 45.0% |
| ! | TAACAAGCGCGGTAGTTTGT+AGG | + | chr5.4:61276582-61276601 | MS.gene49209:CDS | 45.0% |
| ! | TCTGCCTTGTTGCTAAGAAG+AGG | + | chr5.4:61278524-61278543 | MS.gene49209:CDS | 45.0% |
| ! | TGAGATTTGGTTAGAGGGGA+TGG | + | chr5.4:61277260-61277279 | MS.gene49209:intron | 45.0% |
| !! | CGAGTTGATTCCGTTTGGTT+CGG | + | chr5.4:61278339-61278358 | MS.gene49209:CDS | 45.0% |
| !! | ATTTATATAATATCATAATA+TGG | + | chr5.4:61277495-61277514 | MS.gene49209:intron | 5.0% |
| !!! | AATTAATTTATATTCAATTT+TGG | + | chr5.4:61277159-61277178 | MS.gene49209:intron | 5.0% |
| AACAGACACAATTGCAGCCG+CGG | + | chr5.4:61277961-61277980 | MS.gene49209:CDS | 50.0% | |
| AATTGCAGCCGCGGTAGTTT+GGG | + | chr5.4:61277970-61277989 | MS.gene49209:CDS | 50.0% | |
| AGTCATAGCCCAAACTACCG+CGG | - | chr5.4:61277981-61278000 | None:intergenic | 50.0% | |
| CCATAGATCAAGTGGACGGT+AGG | - | chr5.4:61277643-61277662 | None:intergenic | 50.0% | |
| CCTACCGTCCACTTGATCTA+TGG | + | chr5.4:61277640-61277659 | MS.gene49209:intron | 50.0% | |
| GTGGGCAATCCATAGAGATC+CGG | + | chr5.4:61278240-61278259 | MS.gene49209:CDS | 50.0% | |
| TCCAAGCACAAGATGTGCCA+AGG | - | chr5.4:61277549-61277568 | None:intergenic | 50.0% | |
| TCCATAGAGATCCGGAAGCA+TGG | + | chr5.4:61278248-61278267 | MS.gene49209:CDS | 50.0% | |
| TCCATGCTTCCGGATCTCTA+TGG | - | chr5.4:61278252-61278271 | None:intergenic | 50.0% | |
| ! | GTAGTTTGTAGGACCGCGTT+CGG | + | chr5.4:61276593-61276612 | MS.gene49209:CDS | 50.0% |
| ACTCTTCGCCCCGAACCAAA+CGG | - | chr5.4:61278352-61278371 | None:intergenic | 55.0% | |
| CAATTGCAGCCGCGGTAGTT+TGG | + | chr5.4:61277969-61277988 | MS.gene49209:CDS | 55.0% | |
| GCCTTGGCACATCTTGTGCT+TGG | + | chr5.4:61277545-61277564 | MS.gene49209:intron | 55.0% | |
| GGTTAGAGGGGATGGAGAGC+TGG | + | chr5.4:61277268-61277287 | MS.gene49209:intron | 60.0% | |
| GTAGGACCGCGTTCGGTAGA+AGG | + | chr5.4:61276600-61276619 | MS.gene49209:CDS | 60.0% | |
| TCGGGGCGAAGAGTTTGTCC+CGG | + | chr5.4:61278358-61278377 | MS.gene49209:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 61276460 | 61278561 | 61276460 | ID=MS.gene49209 |
| chr5.4 | mRNA | 61276460 | 61278561 | 61276460 | ID=MS.gene49209.t1;Parent=MS.gene49209 |
| chr5.4 | exon | 61276460 | 61276862 | 61276460 | ID=MS.gene49209.t1.exon1;Parent=MS.gene49209.t1 |
| chr5.4 | CDS | 61276460 | 61276862 | 61276460 | ID=cds.MS.gene49209.t1;Parent=MS.gene49209.t1 |
| chr5.4 | exon | 61277944 | 61278561 | 61277944 | ID=MS.gene49209.t1.exon2;Parent=MS.gene49209.t1 |
| chr5.4 | CDS | 61277944 | 61278561 | 61277944 | ID=cds.MS.gene49209.t1;Parent=MS.gene49209.t1 |
| Gene Sequence |
| Protein sequence |
