Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40352.t1 | XP_003603580.1 | 81.8 | 303 | 46 | 4 | 1 | 302 | 1 | 295 | 9.30E-123 | 449.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40352.t1 | Q6H500 | 49.1 | 163 | 80 | 2 | 58 | 218 | 53 | 214 | 1.3e-27 | 125.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40352.t1 | G7J2W2 | 81.8 | 303 | 46 | 4 | 1 | 302 | 1 | 295 | 6.7e-123 | 449.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene40352.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene40352 | -0.819474 | 1.14E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene40352 | -0.838369 | 3.00E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene40352 | -0.820216 | 7.71E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene40352 | -0.833336 | 5.66E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene40352 | -0.839425 | 1.60E-57 | -1.69E-46 |
| MS.gene050163 | MS.gene40352 | -0.854874 | 9.20E-62 | -1.69E-46 |
| MS.gene050165 | MS.gene40352 | -0.853445 | 2.38E-61 | -1.69E-46 |
| MS.gene050333 | MS.gene40352 | -0.804439 | 2.16E-49 | -1.69E-46 |
| MS.gene050353 | MS.gene40352 | 0.852411 | 4.70E-61 | -1.69E-46 |
| MS.gene050504 | MS.gene40352 | -0.8526 | 4.15E-61 | -1.69E-46 |
| MS.gene050518 | MS.gene40352 | -0.823287 | 1.50E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene40352 | -0.82949 | 5.00E-55 | -1.69E-46 |
| MS.gene050699 | MS.gene40352 | -0.809464 | 1.87E-50 | -1.69E-46 |
| MS.gene050832 | MS.gene40352 | 0.814347 | 1.61E-51 | -1.69E-46 |
| MS.gene050833 | MS.gene40352 | 0.818022 | 2.43E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene40352 | -0.816845 | 4.48E-52 | -1.69E-46 |
| MS.gene05100 | MS.gene40352 | -0.815978 | 7.01E-52 | -1.69E-46 |
| MS.gene051551 | MS.gene40352 | -0.803411 | 3.53E-49 | -1.69E-46 |
| MS.gene051579 | MS.gene40352 | 0.832064 | 1.17E-55 | -1.69E-46 |
| MS.gene051810 | MS.gene40352 | -0.815826 | 7.58E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene40352 | -0.803502 | 3.38E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene40352 | -0.802319 | 5.93E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene40352 | -0.807177 | 5.74E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene40352 | -0.834686 | 2.60E-56 | -1.69E-46 |
| MS.gene05470 | MS.gene40352 | -0.811118 | 8.21E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene40352 | -0.828884 | 7.01E-55 | -1.69E-46 |
| MS.gene055154 | MS.gene40352 | 0.809992 | 1.44E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene40352 | -0.82991 | 3.95E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene40352 | -0.828706 | 7.74E-55 | -1.69E-46 |
| MS.gene055956 | MS.gene40352 | 0.810629 | 1.05E-50 | -1.69E-46 |
| MS.gene056083 | MS.gene40352 | -0.805134 | 1.55E-49 | -1.69E-46 |
| MS.gene056550 | MS.gene40352 | 0.85787 | 1.22E-62 | -1.69E-46 |
| MS.gene056657 | MS.gene40352 | -0.824462 | 7.97E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene40352 | -0.828218 | 1.02E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene40352 | -0.812766 | 3.59E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene40352 | -0.831074 | 2.05E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene40352 | -0.844142 | 9.08E-59 | -1.69E-46 |
| MS.gene059479 | MS.gene40352 | 0.802387 | 5.75E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene40352 | -0.86599 | 3.95E-65 | -1.69E-46 |
| MS.gene059718 | MS.gene40352 | -0.814936 | 1.20E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene40352 | -0.800834 | 1.20E-48 | -1.69E-46 |
| MS.gene060337 | MS.gene40352 | 0.820152 | 7.98E-53 | -1.69E-46 |
| MS.gene060694 | MS.gene40352 | 0.80549 | 1.30E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene40352 | -0.821082 | 4.88E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene40352 | -0.809678 | 1.68E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene40352 | -0.802026 | 6.82E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40352.t1 | MTR_3g109310 | 89.109 | 303 | 24 | 4 | 1 | 302 | 1 | 295 | 0.0 | 543 |
| MS.gene40352.t1 | MTR_1g008990 | 57.383 | 298 | 102 | 12 | 21 | 302 | 51 | 339 | 2.98e-84 | 257 |
| MS.gene40352.t1 | MTR_1g008990 | 62.437 | 197 | 57 | 6 | 21 | 202 | 51 | 245 | 5.82e-59 | 189 |
| MS.gene40352.t1 | MTR_3g110010 | 81.746 | 126 | 23 | 0 | 132 | 257 | 633 | 758 | 2.59e-55 | 191 |
| MS.gene40352.t1 | MTR_3g109982 | 80.952 | 126 | 24 | 0 | 132 | 257 | 649 | 774 | 7.70e-55 | 190 |
| MS.gene40352.t1 | MTR_1g080920 | 48.611 | 144 | 67 | 4 | 98 | 238 | 177 | 316 | 1.11e-22 | 97.4 |
| MS.gene40352.t1 | MTR_7g115120 | 50.000 | 138 | 62 | 3 | 78 | 215 | 150 | 280 | 2.49e-21 | 93.2 |
| MS.gene40352.t1 | MTR_7g115140 | 41.322 | 121 | 69 | 1 | 80 | 200 | 88 | 206 | 5.16e-18 | 81.3 |
| MS.gene40352.t1 | MTR_1g022495 | 32.203 | 118 | 80 | 0 | 100 | 217 | 2 | 119 | 1.23e-12 | 65.1 |
| MS.gene40352.t1 | MTR_8g015250 | 40.426 | 94 | 53 | 1 | 123 | 216 | 69 | 159 | 8.80e-11 | 60.5 |
| MS.gene40352.t1 | MTR_4g070860 | 35.484 | 93 | 60 | 0 | 115 | 207 | 17 | 109 | 8.90e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40352.t1 | AT5G24800 | 45.148 | 237 | 102 | 9 | 73 | 302 | 62 | 277 | 1.91e-45 | 155 |
| MS.gene40352.t1 | AT5G28770 | 48.175 | 137 | 65 | 3 | 102 | 238 | 122 | 252 | 1.42e-19 | 87.4 |
| MS.gene40352.t1 | AT5G28770 | 48.175 | 137 | 65 | 3 | 102 | 238 | 129 | 259 | 1.47e-19 | 87.4 |
| MS.gene40352.t1 | AT5G28770 | 52.000 | 100 | 46 | 1 | 102 | 201 | 129 | 226 | 1.38e-15 | 75.5 |
| MS.gene40352.t1 | AT4G02640 | 47.917 | 96 | 47 | 1 | 126 | 221 | 221 | 313 | 2.37e-13 | 70.5 |
| MS.gene40352.t1 | AT4G02640 | 47.917 | 96 | 47 | 1 | 126 | 221 | 221 | 313 | 2.53e-13 | 70.5 |
| MS.gene40352.t1 | AT4G02640 | 47.917 | 96 | 47 | 1 | 126 | 221 | 215 | 307 | 2.71e-13 | 70.1 |
| MS.gene40352.t1 | AT4G02640 | 47.917 | 96 | 47 | 1 | 126 | 221 | 215 | 307 | 3.05e-13 | 70.1 |
| MS.gene40352.t1 | AT3G54620 | 46.429 | 84 | 45 | 0 | 126 | 209 | 229 | 312 | 5.22e-11 | 63.2 |
Find 66 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCTCAGCCATCTATTTA+TGG | 0.124761 | 3.3:+89492302 | MS.gene40352:CDS |
| TTTGGTTTATTAGCTGAAAC+TGG | 0.195300 | 3.3:-89492435 | None:intergenic |
| AACACTATACAAACAGTTTA+TGG | 0.233451 | 3.3:+89492995 | MS.gene40352:CDS |
| TTTGACAGAAATACCTTCTA+TGG | 0.244115 | 3.3:-89492569 | None:intergenic |
| CTATGAGTTGTGTAAATATT+TGG | 0.245467 | 3.3:+89493465 | MS.gene40352:CDS |
| ATATTATTCTCTTTGTTGTT+TGG | 0.273240 | 3.3:-89492453 | None:intergenic |
| AGTTTACCGGTAGGAGAGTT+TGG | 0.295352 | 3.3:-89489146 | None:intergenic |
| AATTCGAATCTTGCTGGGTT+TGG | 0.309808 | 3.3:+89493389 | MS.gene40352:CDS |
| TCTTGCTGGGTTTGGAAACT+TGG | 0.316743 | 3.3:+89493397 | MS.gene40352:CDS |
| GTGCACAATTCGAATCTTGC+TGG | 0.321584 | 3.3:+89493383 | MS.gene40352:CDS |
| AGCACTGATGGTGGAATGTT+TGG | 0.379902 | 3.3:-89492273 | None:intergenic |
| AATGTTTGGGAGTGAAGTTT+TGG | 0.394976 | 3.3:-89492259 | None:intergenic |
| ATTTCCCTGCAGGACATTGA+TGG | 0.400011 | 3.3:-89493327 | None:intergenic |
| ATGTGGCATGCGGCGAATAC+TGG | 0.408973 | 3.3:-89493294 | None:intergenic |
| TGAATCTCGATTACGAGTTT+CGG | 0.410788 | 3.3:+89489067 | MS.gene40352:CDS |
| ACAATGATGTCGTCGACAAT+GGG | 0.419225 | 3.3:+89493429 | MS.gene40352:CDS |
| TTGATATGAAACGCCATAGA+AGG | 0.425277 | 3.3:+89492556 | MS.gene40352:CDS |
| GGTGAAGTTAGCTGAGGATA+TGG | 0.427027 | 3.3:+89493181 | MS.gene40352:intron |
| TTTGTCTGAACTTGAGTCTC+AGG | 0.431765 | 3.3:+89492725 | MS.gene40352:CDS |
| AACCGCAACACCACCGTATG+AGG | 0.448822 | 3.3:-89493357 | None:intergenic |
| TCCGACGAGGATAATGAATC+AGG | 0.453955 | 3.3:+89492507 | MS.gene40352:CDS |
| GTATCCAAGTCTTGCCGATA+CGG | 0.463283 | 3.3:+89489089 | MS.gene40352:CDS |
| CAGCCATCTATTTATGGCAC+TGG | 0.467277 | 3.3:+89492308 | MS.gene40352:CDS |
| GCCAACCATCAATGTCCTGC+AGG | 0.476677 | 3.3:+89493322 | MS.gene40352:CDS |
| ATACCAGTGCCATAAATAGA+TGG | 0.477311 | 3.3:-89492311 | None:intergenic |
| TGCACAATTCGAATCTTGCT+GGG | 0.484135 | 3.3:+89493384 | MS.gene40352:CDS |
| ACAAAGAGAATAATATCAAA+GGG | 0.493368 | 3.3:+89492460 | MS.gene40352:CDS |
| CACAACTCATAGCATTGCTT+AGG | 0.501122 | 3.3:-89493454 | None:intergenic |
| TACAATGATGTCGTCGACAA+TGG | 0.501669 | 3.3:+89493428 | MS.gene40352:CDS |
| CCCTGCAGGACATTGATGGT+TGG | 0.501779 | 3.3:-89493323 | None:intergenic |
| CGCTTTCCAAACTCTCCTAC+CGG | 0.524112 | 3.3:+89489140 | MS.gene40352:CDS |
| GCCTCCGTATCGGCAAGACT+TGG | 0.526307 | 3.3:-89489093 | None:intergenic |
| TTGTCGACGACATCATTGTA+AGG | 0.529396 | 3.3:-89493425 | None:intergenic |
| TTGGTTTATTAGCTGAAACT+GGG | 0.535446 | 3.3:-89492434 | None:intergenic |
| AGGCACTATTATTTCCCTGC+AGG | 0.536074 | 3.3:-89493337 | None:intergenic |
| GCACTGATGGTGGAATGTTT+GGG | 0.539183 | 3.3:-89492272 | None:intergenic |
| TGTAGAAGCTTTGAGAGCTA+AGG | 0.540256 | 3.3:+89493073 | MS.gene40352:CDS |
| AACAAAGAGAATAATATCAA+AGG | 0.546304 | 3.3:+89492459 | MS.gene40352:CDS |
| GGAAATAATAGTGCCTCATA+CGG | 0.548614 | 3.3:+89493344 | MS.gene40352:CDS |
| GATACGGAGGCATTCATGAC+CGG | 0.550151 | 3.3:+89489105 | MS.gene40352:CDS |
| GTGAGTCAGCCAAGAGGTCA+AGG | 0.556802 | 3.3:+89492685 | MS.gene40352:CDS |
| ACCTGATTCATTATCCTCGT+CGG | 0.562154 | 3.3:-89492508 | None:intergenic |
| AGAATCAATAGTAGCACTGA+TGG | 0.570342 | 3.3:-89492285 | None:intergenic |
| AAACTGATTGTTTAGTGATG+TGG | 0.571542 | 3.3:-89493222 | None:intergenic |
| CCGGCGAGCGATGGCAACAA+CGG | 0.577221 | 3.3:+89489023 | None:intergenic |
| ATCAATAGTAGCACTGATGG+TGG | 0.581341 | 3.3:-89492282 | None:intergenic |
| GATTCATTATCCTCGTCGGA+TGG | 0.582930 | 3.3:-89492504 | None:intergenic |
| GAAAGCGGCGGAGCAAACTC+CGG | 0.584176 | 3.3:-89489124 | None:intergenic |
| GGTCATGAATGCCTCCGTAT+CGG | 0.589824 | 3.3:-89489103 | None:intergenic |
| TCATACGGTGGTGTTGCGGT+TGG | 0.590129 | 3.3:+89493359 | MS.gene40352:CDS |
| AATATCAAAGGGACATCAAG+TGG | 0.598499 | 3.3:+89492471 | MS.gene40352:CDS |
| TGCCTCATACGGTGGTGTTG+CGG | 0.602335 | 3.3:+89493355 | MS.gene40352:CDS |
| AATAATAGTGCCTCATACGG+TGG | 0.620063 | 3.3:+89493347 | MS.gene40352:CDS |
| TCCAAGTCTTGCCGATACGG+AGG | 0.642233 | 3.3:+89489092 | MS.gene40352:CDS |
| CCAACCATCAATGTCCTGCA+GGG | 0.644784 | 3.3:+89493323 | MS.gene40352:CDS |
| TACTAGTCAACAATTTCATG+AGG | 0.659476 | 3.3:+89493019 | MS.gene40352:CDS |
| TAGGAGAGTTTGGAAAGCGG+CGG | 0.671217 | 3.3:-89489136 | None:intergenic |
| ATAATAGGTGAAGTTAGCTG+AGG | 0.671237 | 3.3:+89493175 | MS.gene40352:intron |
| AGTCAGCCAAGAGGTCAAGG+TGG | 0.672836 | 3.3:+89492688 | MS.gene40352:CDS |
| CGGTAGGAGAGTTTGGAAAG+CGG | 0.687279 | 3.3:-89489139 | None:intergenic |
| CTGGTAGTCATGTTGAGTTG+TGG | 0.702154 | 3.3:-89493275 | None:intergenic |
| CTAATTGTGAGTCAGCCAAG+AGG | 0.709587 | 3.3:+89492679 | MS.gene40352:CDS |
| TTCATCTGATCCATCCGACG+AGG | 0.710432 | 3.3:+89492494 | MS.gene40352:CDS |
| TTGGCGAAACATGTGGCATG+CGG | 0.727060 | 3.3:-89493304 | None:intergenic |
| CAATGATGTCGTCGACAATG+GGG | 0.731606 | 3.3:+89493430 | MS.gene40352:CDS |
| TTGATGGTTGGCGAAACATG+TGG | 0.736785 | 3.3:-89493311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAAAAATGTTTG+TGG | + | chr3.3:89489593-89489612 | MS.gene40352:intron | 10.0% |
| !! | ATTATATTAATTACAAAAGA+TGG | - | chr3.3:89490834-89490853 | None:intergenic | 10.0% |
| !! | GTTAAATTTCAAAATAAAAA+AGG | + | chr3.3:89490433-89490452 | MS.gene40352:intron | 10.0% |
| !! | TCATTTCTTAAAAAAAAAAA+AGG | - | chr3.3:89491654-89491673 | None:intergenic | 10.0% |
| !! | AATATAACAATTGTTATGAA+GGG | + | chr3.3:89490364-89490383 | MS.gene40352:intron | 15.0% |
| !! | ACAAATAGAGTTAAATTTAT+AGG | - | chr3.3:89489376-89489395 | None:intergenic | 15.0% |
| !! | ATAAAGGAAAATGAATTTAT+TGG | + | chr3.3:89490104-89490123 | MS.gene40352:intron | 15.0% |
| !! | CTAAAATAAATTCTTCTTAA+GGG | - | chr3.3:89492135-89492154 | None:intergenic | 15.0% |
| !! | GATTATTAGTATAATATTAG+TGG | + | chr3.3:89489895-89489914 | MS.gene40352:intron | 15.0% |
| !! | TTAATATAATTAATCTCGTT+AGG | + | chr3.3:89490844-89490863 | MS.gene40352:intron | 15.0% |
| !! | TTTACATATGCTATTATAAT+AGG | + | chr3.3:89493160-89493179 | MS.gene40352:intron | 15.0% |
| !!! | GAATTTCATTTTTTTTTTGA+GGG | - | chr3.3:89491022-89491041 | None:intergenic | 15.0% |
| !!! | TCTAAAACTTATAAATTGAT+TGG | - | chr3.3:89490185-89490204 | None:intergenic | 15.0% |
| !!! | TCTAAAATAAATTCTTCTTA+AGG | - | chr3.3:89492136-89492155 | None:intergenic | 15.0% |
| !!! | TGAATTTCATTTTTTTTTTG+AGG | - | chr3.3:89491023-89491042 | None:intergenic | 15.0% |
| !!! | TTTTATTTTATTTGAAGACA+TGG | - | chr3.3:89489331-89489350 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTAAGAAATGAAG+AGG | + | chr3.3:89491656-89491675 | MS.gene40352:intron | 15.0% |
| !! | AAAAACTATAAACTACTAGT+AGG | + | chr3.3:89491142-89491161 | MS.gene40352:intron | 20.0% |
| !! | AAAACTATAAACTACTAGTA+GGG | + | chr3.3:89491143-89491162 | MS.gene40352:intron | 20.0% |
| !! | AAAGAATATTAATCTTGTGT+AGG | - | chr3.3:89489933-89489952 | None:intergenic | 20.0% |
| !! | AACAAAAAATACTATATGGT+TGG | + | chr3.3:89491897-89491916 | MS.gene40352:intron | 20.0% |
| !! | AACAAAGAGAATAATATCAA+AGG | + | chr3.3:89492459-89492478 | MS.gene40352:CDS | 20.0% |
| !! | ACAAAGAGAATAATATCAAA+GGG | + | chr3.3:89492460-89492479 | MS.gene40352:CDS | 20.0% |
| !! | AGATTAATATTCTTTGCATT+CGG | + | chr3.3:89489938-89489957 | MS.gene40352:intron | 20.0% |
| !! | ATATAACAATTGTTATGAAG+GGG | + | chr3.3:89490365-89490384 | MS.gene40352:intron | 20.0% |
| !! | ATTAGTATAATATTAGTGGT+GGG | + | chr3.3:89489899-89489918 | MS.gene40352:intron | 20.0% |
| !! | CAACAACAAAAAATACTATA+TGG | + | chr3.3:89491893-89491912 | MS.gene40352:intron | 20.0% |
| !! | GAATATAACAATTGTTATGA+AGG | + | chr3.3:89490363-89490382 | MS.gene40352:intron | 20.0% |
| !! | TATTAGTATAATATTAGTGG+TGG | + | chr3.3:89489898-89489917 | MS.gene40352:intron | 20.0% |
| !!! | AAACTTTAAAAGATACTACA+TGG | + | chr3.3:89491864-89491883 | MS.gene40352:intron | 20.0% |
| !!! | AAATTAATAGTTTTACACTG+TGG | - | chr3.3:89491080-89491099 | None:intergenic | 20.0% |
| !!! | AATCAAATACATCAGTTTTT+TGG | + | chr3.3:89489512-89489531 | MS.gene40352:intron | 20.0% |
| !!! | ATATTATTCTCTTTGTTGTT+TGG | - | chr3.3:89492456-89492475 | None:intergenic | 20.0% |
| !!! | CATATAGTATTTTTTGTTGT+TGG | - | chr3.3:89491895-89491914 | None:intergenic | 20.0% |
| !!! | CTCTTGTTTCTTTTTTTTTT+TGG | - | chr3.3:89490892-89490911 | None:intergenic | 20.0% |
| !!! | GATTCTTATTCAAATTTTTG+AGG | - | chr3.3:89491201-89491220 | None:intergenic | 20.0% |
| !!! | TACTAGGTTTATCATTTTTT+TGG | + | chr3.3:89490794-89490813 | MS.gene40352:intron | 20.0% |
| !!! | TTAATAGAGAAAGTTTTACA+CGG | + | chr3.3:89490930-89490949 | MS.gene40352:intron | 20.0% |
| !!! | TTAGTGTCTTATTATTTACT+AGG | + | chr3.3:89490778-89490797 | MS.gene40352:intron | 20.0% |
| ! | AAAAATGTTTGTGGACATAT+TGG | + | chr3.3:89489602-89489621 | MS.gene40352:intron | 25.0% |
| ! | AAAATGTTTGTGGACATATT+GGG | + | chr3.3:89489603-89489622 | MS.gene40352:intron | 25.0% |
| ! | AACACTATACAAACAGTTTA+TGG | + | chr3.3:89492995-89493014 | MS.gene40352:CDS | 25.0% |
| ! | ACAACACTTCTTATTATATG+TGG | + | chr3.3:89492608-89492627 | MS.gene40352:intron | 25.0% |
| ! | ACTCTATTTGTTTAGTAAGT+TGG | + | chr3.3:89489385-89489404 | MS.gene40352:intron | 25.0% |
| ! | ATGACTCTTCAAATGAATAA+AGG | + | chr3.3:89490088-89490107 | MS.gene40352:intron | 25.0% |
| ! | ATTGAGATATATGAGAGAAA+GGG | + | chr3.3:89489548-89489567 | MS.gene40352:intron | 25.0% |
| ! | CAATTCTTCAAATGTAACTT+AGG | - | chr3.3:89490228-89490247 | None:intergenic | 25.0% |
| ! | CTATGAGTTGTGTAAATATT+TGG | + | chr3.3:89493465-89493484 | MS.gene40352:CDS | 25.0% |
| ! | CTCAACTTGAAAAATGTATA+TGG | + | chr3.3:89491841-89491860 | MS.gene40352:intron | 25.0% |
| ! | CTGTTACCTAAAAAACTTAA+AGG | + | chr3.3:89491579-89491598 | MS.gene40352:intron | 25.0% |
| ! | CTGTTACCTAAAAAACTTAA+AGG | - | chr3.3:89491598-89491579 | None:intergenic | 25.0% |
| ! | GTTACAAACATGAAACTTAA+AGG | + | chr3.3:89491610-89491629 | MS.gene40352:intron | 25.0% |
| ! | GTTACAAACATGAAACTTAA+AGG | - | chr3.3:89491629-89491610 | None:intergenic | 25.0% |
| ! | TACTATGAATTGAAGACATT+GGG | - | chr3.3:89489834-89489853 | None:intergenic | 25.0% |
| ! | TATAACAATTGTTATGAAGG+GGG | + | chr3.3:89490366-89490385 | MS.gene40352:intron | 25.0% |
| ! | TCTCAATTTCATTTGATAGA+TGG | - | chr3.3:89491228-89491247 | None:intergenic | 25.0% |
| ! | TGAGAGATCAAAATTCAAAT+GGG | - | chr3.3:89492948-89492967 | None:intergenic | 25.0% |
| ! | TTAATCAACGTTTATATCTC+TGG | + | chr3.3:89490142-89490161 | MS.gene40352:intron | 25.0% |
| ! | TTATTCATTTGAAGAGTCAT+GGG | - | chr3.3:89490088-89490107 | None:intergenic | 25.0% |
| ! | TTTATTCATTTGAAGAGTCA+TGG | - | chr3.3:89490089-89490108 | None:intergenic | 25.0% |
| !! | ATACATGTAGTTTGACATTT+TGG | + | chr3.3:89492383-89492402 | MS.gene40352:intron | 25.0% |
| !! | ATTTTGGATTGAATTGCATA+TGG | + | chr3.3:89492399-89492418 | MS.gene40352:intron | 25.0% |
| !! | CGAAATTAATATAAAGGTAC+AGG | + | chr3.3:89491169-89491188 | MS.gene40352:intron | 25.0% |
| !! | CTGAAACTTTAGAAACTTAA+AGG | - | chr3.3:89491464-89491483 | None:intergenic | 25.0% |
| !!! | AAGTTTGTTCTTGTTATTTC+CGG | - | chr3.3:89489294-89489313 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTAGGTAACAGAT+AGG | + | chr3.3:89491437-89491456 | MS.gene40352:intron | 25.0% |
| !!! | AAGTTTTTTAGGTAACAGAT+AGG | - | chr3.3:89491456-89491437 | None:intergenic | 25.0% |
| !!! | AATTTTGTTTCTGGAATTGT+AGG | + | chr3.3:89492775-89492794 | MS.gene40352:intron | 25.0% |
| !!! | AGACTCTTTTTTTTCATTTG+AGG | - | chr3.3:89490059-89490078 | None:intergenic | 25.0% |
| !!! | AGTTTTTTGGCTGATAATTT+GGG | + | chr3.3:89489525-89489544 | MS.gene40352:intron | 25.0% |
| !!! | ATACATTTTTCAAGTTGAGT+TGG | - | chr3.3:89491840-89491859 | None:intergenic | 25.0% |
| !!! | ATAGGTCCTTTAAGTTTTTT+AGG | + | chr3.3:89491426-89491445 | MS.gene40352:intron | 25.0% |
| !!! | ATAGGTCCTTTAAGTTTTTT+AGG | - | chr3.3:89491445-89491426 | None:intergenic | 25.0% |
| !!! | GAAGTCATTAATTTTGTTTC+TGG | + | chr3.3:89492766-89492785 | MS.gene40352:intron | 25.0% |
| !!! | GACTCTTTTTTTTCATTTGA+GGG | - | chr3.3:89490058-89490077 | None:intergenic | 25.0% |
| !!! | GGGTATCGAAATTAATATAA+AGG | + | chr3.3:89491163-89491182 | MS.gene40352:intron | 25.0% |
| !!! | TATTCAAATTTTTGAGGTCT+TGG | - | chr3.3:89491195-89491214 | None:intergenic | 25.0% |
| AAACTGATTGTTTAGTGATG+TGG | - | chr3.3:89493225-89493244 | None:intergenic | 30.0% | |
| AAATGTTTGTGGACATATTG+GGG | + | chr3.3:89489604-89489623 | MS.gene40352:intron | 30.0% | |
| AATGTCAAACTACATGTATG+AGG | - | chr3.3:89492382-89492401 | None:intergenic | 30.0% | |
| ACTATGAATTGAAGACATTG+GGG | - | chr3.3:89489833-89489852 | None:intergenic | 30.0% | |
| AGAAATCAAGACAAGATTCT+TGG | - | chr3.3:89489868-89489887 | None:intergenic | 30.0% | |
| AGCAAGACAGCATTAAAAAA+AGG | - | chr3.3:89489792-89489811 | None:intergenic | 30.0% | |
| AGTTTCAGATAGATCCTTAA+CGG | + | chr3.3:89491476-89491495 | MS.gene40352:intron | 30.0% | |
| ATATTTGTACGACTATAGCT+TGG | - | chr3.3:89490033-89490052 | None:intergenic | 30.0% | |
| ATCACTTCATCAAATCACAT+AGG | - | chr3.3:89492059-89492078 | None:intergenic | 30.0% | |
| ATTATATAACCATTCTCTCG+TGG | - | chr3.3:89490293-89490312 | None:intergenic | 30.0% | |
| CATGCTTCAATTGAAATAGT+AGG | - | chr3.3:89492872-89492891 | None:intergenic | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr3.3:89491550-89491569 | MS.gene40352:intron | 30.0% | |
| CTGAGAGATCAAAATTCAAA+TGG | - | chr3.3:89492949-89492968 | None:intergenic | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | + | chr3.3:89491521-89491540 | MS.gene40352:intron | 30.0% | |
| GATCAATTATGTGTAATCGT+TGG | - | chr3.3:89491058-89491077 | None:intergenic | 30.0% | |
| GATTGAGATATATGAGAGAA+AGG | + | chr3.3:89489547-89489566 | MS.gene40352:intron | 30.0% | |
| GCTCACAAAAAATCTTCATA+AGG | - | chr3.3:89489691-89489710 | None:intergenic | 30.0% | |
| GTACTATGAATTGAAGACAT+TGG | - | chr3.3:89489835-89489854 | None:intergenic | 30.0% | |
| GTCATCATGAGTTAAAAGTA+GGG | + | chr3.3:89489652-89489671 | MS.gene40352:intron | 30.0% | |
| GTTTCATGTTTGTAACAGAT+AGG | + | chr3.3:89491408-89491427 | MS.gene40352:intron | 30.0% | |
| GTTTCATGTTTGTAACAGAT+AGG | - | chr3.3:89491427-89491408 | None:intergenic | 30.0% | |
| TATAGAGACAGATTGTAAGA+CGG | + | chr3.3:89491778-89491797 | MS.gene40352:intron | 30.0% | |
| TGATATAATGATTCGTGACA+TGG | + | chr3.3:89492642-89492661 | MS.gene40352:intron | 30.0% | |
| TTGGTTTATTAGCTGAAACT+GGG | - | chr3.3:89492437-89492456 | None:intergenic | 30.0% | |
| TTTGACAGAAATACCTTCTA+TGG | - | chr3.3:89492572-89492591 | None:intergenic | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | - | chr3.3:89491474-89491455 | None:intergenic | 30.0% |
| ! | CAGGTAACTAATCAATGTTT+TGG | + | chr3.3:89492744-89492763 | MS.gene40352:intron | 30.0% |
| ! | TAATTCTGAGAGCAAATTCT+AGG | + | chr3.3:89492843-89492862 | MS.gene40352:intron | 30.0% |
| ! | TTTGGTTTATTAGCTGAAAC+TGG | - | chr3.3:89492438-89492457 | None:intergenic | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | - | chr3.3:89491548-89491567 | None:intergenic | 30.0% |
| !! | CATTTGAATTTTGATCTCTC+AGG | + | chr3.3:89492947-89492966 | MS.gene40352:intron | 30.0% |
| !! | GCTTTAAAAAAAACAACGAC+CGG | - | chr3.3:89490698-89490717 | None:intergenic | 30.0% |
| !!! | CAGTTTTTTGGCTGATAATT+TGG | + | chr3.3:89489524-89489543 | MS.gene40352:intron | 30.0% |
| !!! | TTTTTTGTGAGCAAAAGACT+TGG | + | chr3.3:89489699-89489718 | MS.gene40352:intron | 30.0% |
| AAAAATGATCCACGAGAGAA+TGG | + | chr3.3:89490281-89490300 | MS.gene40352:intron | 35.0% | |
| AATATCAAAGGGACATCAAG+TGG | + | chr3.3:89492471-89492490 | MS.gene40352:CDS | 35.0% | |
| ACATATTGGGGAGTTAAAAG+AGG | + | chr3.3:89489616-89489635 | MS.gene40352:intron | 35.0% | |
| ACTTTGTAACATCCATGTGA+AGG | + | chr3.3:89492079-89492098 | MS.gene40352:intron | 35.0% | |
| AGAAAGAGAGAAGAGTTTAC+CGG | - | chr3.3:89489162-89489181 | None:intergenic | 35.0% | |
| ATAATAGGTGAAGTTAGCTG+AGG | + | chr3.3:89493175-89493194 | MS.gene40352:intron | 35.0% | |
| ATACCAGTGCCATAAATAGA+TGG | - | chr3.3:89492314-89492333 | None:intergenic | 35.0% | |
| ATATTGGGGAGTTAAAAGAG+GGG | + | chr3.3:89489618-89489637 | MS.gene40352:intron | 35.0% | |
| ATGAGTTAAAAGTAGGGATG+TGG | + | chr3.3:89489658-89489677 | MS.gene40352:intron | 35.0% | |
| CACAATTTGATATCTCATGC+AGG | + | chr3.3:89492805-89492824 | MS.gene40352:intron | 35.0% | |
| CATATTGGGGAGTTAAAAGA+GGG | + | chr3.3:89489617-89489636 | MS.gene40352:intron | 35.0% | |
| CATGAAAAGGTTACATAAGC+TGG | - | chr3.3:89492183-89492202 | None:intergenic | 35.0% | |
| CCTGCTATTCAATCATGAAA+AGG | - | chr3.3:89492196-89492215 | None:intergenic | 35.0% | |
| CGAATGAATACTTCAAGACT+AGG | + | chr3.3:89491103-89491122 | MS.gene40352:intron | 35.0% | |
| CTATGAATTGAAGACATTGG+GGG | - | chr3.3:89489832-89489851 | None:intergenic | 35.0% | |
| CTTTGTAACATCCATGTGAA+GGG | + | chr3.3:89492080-89492099 | MS.gene40352:intron | 35.0% | |
| GATTCTCAGCCATCTATTTA+TGG | + | chr3.3:89492302-89492321 | MS.gene40352:CDS | 35.0% | |
| GGAAATAATAGTGCCTCATA+CGG | + | chr3.3:89493344-89493363 | MS.gene40352:CDS | 35.0% | |
| GGTCATCATGAGTTAAAAGT+AGG | + | chr3.3:89489651-89489670 | MS.gene40352:intron | 35.0% | |
| TAAAAGAGGGGAAGTGAAAA+AGG | + | chr3.3:89489630-89489649 | MS.gene40352:intron | 35.0% | |
| TATGAATTGAAGACATTGGG+GGG | - | chr3.3:89489831-89489850 | None:intergenic | 35.0% | |
| TGAATCTCGATTACGAGTTT+CGG | + | chr3.3:89489067-89489086 | MS.gene40352:CDS | 35.0% | |
| TGAGCACATCATTTATGTAG+AGG | + | chr3.3:89491931-89491950 | MS.gene40352:intron | 35.0% | |
| TGAGTTAAAAGTAGGGATGT+GGG | + | chr3.3:89489659-89489678 | MS.gene40352:intron | 35.0% | |
| TTGATATGAAACGCCATAGA+AGG | + | chr3.3:89492556-89492575 | MS.gene40352:CDS | 35.0% | |
| ! | AATGTTTGGGAGTGAAGTTT+TGG | - | chr3.3:89492262-89492281 | None:intergenic | 35.0% |
| ! | AGAATCAATAGTAGCACTGA+TGG | - | chr3.3:89492288-89492307 | None:intergenic | 35.0% |
| ! | AGTTCATTTTCAACTTGTGG+TGG | + | chr3.3:89492224-89492243 | MS.gene40352:CDS | 35.0% |
| ! | ATGTTTGGGAGTGAAGTTTT+GGG | - | chr3.3:89492261-89492280 | None:intergenic | 35.0% |
| ! | CCTTTTCATGATTGAATAGC+AGG | + | chr3.3:89492193-89492212 | MS.gene40352:intron | 35.0% |
| ! | GTGAGTTCATTTTCAACTTG+TGG | + | chr3.3:89492221-89492240 | MS.gene40352:CDS | 35.0% |
| ! | TAGAGAAAGTTTTACACGGT+CGG | + | chr3.3:89490934-89490953 | MS.gene40352:intron | 35.0% |
| ! | TTTGAGACAATTTCTCATGC+AGG | + | chr3.3:89491695-89491714 | MS.gene40352:intron | 35.0% |
| !! | ATTTATGGCACTGGTATGTA+TGG | + | chr3.3:89492317-89492336 | MS.gene40352:intron | 35.0% |
| !! | CTACATCTGATTTTAGCACT+CGG | - | chr3.3:89493058-89493077 | None:intergenic | 35.0% |
| !! | CTCTCGTGGATCATTTTTAT+TGG | - | chr3.3:89490279-89490298 | None:intergenic | 35.0% |
| !! | GAATACTGATAGCGTGTTTT+TGG | - | chr3.3:89491728-89491747 | None:intergenic | 35.0% |
| !! | TTGTTTCTGGAATTGTAGGT+AGG | + | chr3.3:89492779-89492798 | MS.gene40352:intron | 35.0% |
| AATAATAGTGCCTCATACGG+TGG | + | chr3.3:89493347-89493366 | MS.gene40352:CDS | 40.0% | |
| AATGCACTCCTAACGTAAAC+CGG | + | chr3.3:89490676-89490695 | MS.gene40352:intron | 40.0% | |
| AATTCGAATCTTGCTGGGTT+TGG | + | chr3.3:89493389-89493408 | MS.gene40352:CDS | 40.0% | |
| ACAATGATGTCGTCGACAAT+GGG | + | chr3.3:89493429-89493448 | MS.gene40352:CDS | 40.0% | |
| ACATGAAACTTAAAGGACCC+AGG | + | chr3.3:89491617-89491636 | MS.gene40352:intron | 40.0% | |
| ACATGAAACTTAAAGGACCC+AGG | - | chr3.3:89491636-89491617 | None:intergenic | 40.0% | |
| ACCTGATTCATTATCCTCGT+CGG | - | chr3.3:89492511-89492530 | None:intergenic | 40.0% | |
| ATTCGTGACATGGTTTCAGA+AGG | + | chr3.3:89492652-89492671 | MS.gene40352:intron | 40.0% | |
| CACAACTCATAGCATTGCTT+AGG | - | chr3.3:89493457-89493476 | None:intergenic | 40.0% | |
| CATGAAACTTAAAGGACCCA+GGG | + | chr3.3:89491618-89491637 | MS.gene40352:intron | 40.0% | |
| CATGAAACTTAAAGGACCCA+GGG | - | chr3.3:89491637-89491618 | None:intergenic | 40.0% | |
| CCTTCATATCAACTCCGTTA+AGG | - | chr3.3:89491493-89491512 | None:intergenic | 40.0% | |
| CTTTAAATTCAAGCAGCCGT+TGG | + | chr3.3:89489965-89489984 | MS.gene40352:intron | 40.0% | |
| GAGATATATGAGAGAAAGGG+AGG | + | chr3.3:89489551-89489570 | MS.gene40352:intron | 40.0% | |
| TACAATGATGTCGTCGACAA+TGG | + | chr3.3:89493428-89493447 | MS.gene40352:CDS | 40.0% | |
| TAGTGTGAACGCATGACTTT+GGG | + | chr3.3:89489758-89489777 | MS.gene40352:intron | 40.0% | |
| TCTAAGTTCCACCAATCCAA+CGG | - | chr3.3:89489984-89490003 | None:intergenic | 40.0% | |
| TGAATTGCATATGGAGCAGT+TGG | + | chr3.3:89492408-89492427 | MS.gene40352:intron | 40.0% | |
| TGAGGAATGTTGAGATGTGT+AGG | - | chr3.3:89492364-89492383 | None:intergenic | 40.0% | |
| TGCACAATTCGAATCTTGCT+GGG | + | chr3.3:89493384-89493403 | MS.gene40352:CDS | 40.0% | |
| TTCGTGACATGGTTTCAGAA+GGG | + | chr3.3:89492653-89492672 | MS.gene40352:intron | 40.0% | |
| TTGTCGACGACATCATTGTA+AGG | - | chr3.3:89493428-89493447 | None:intergenic | 40.0% | |
| TTTGTCTGAACTTGAGTCTC+AGG | + | chr3.3:89492725-89492744 | MS.gene40352:CDS | 40.0% | |
| TTTGTGAGCAAAAGACTTGG+TGG | + | chr3.3:89489702-89489721 | MS.gene40352:intron | 40.0% | |
| ! | AATGCTGTCTTGCTCTCTTT+TGG | + | chr3.3:89489798-89489817 | MS.gene40352:intron | 40.0% |
| ! | TATGAGAGAAAGGGAGGTAT+TGG | + | chr3.3:89489557-89489576 | MS.gene40352:intron | 40.0% |
| ! | TTGTGAGCAAAAGACTTGGT+GGG | + | chr3.3:89489703-89489722 | MS.gene40352:intron | 40.0% |
| ! | TTTTTGCCAAATACCTCCCT+GGG | + | chr3.3:89491377-89491396 | MS.gene40352:intron | 40.0% |
| !! | AACTGAAAGTACTGATGACG+TGG | + | chr3.3:89489222-89489241 | MS.gene40352:intron | 40.0% |
| !! | ATCAATAGTAGCACTGATGG+TGG | - | chr3.3:89492285-89492304 | None:intergenic | 40.0% |
| !! | CCTTAACGGAGTTGATATGA+AGG | + | chr3.3:89491490-89491509 | MS.gene40352:intron | 40.0% |
| !! | TCAGGTTGAAAAACTGACAC+TGG | + | chr3.3:89492965-89492984 | MS.gene40352:intron | 40.0% |
| !! | TGTAGAAGCTTTGAGAGCTA+AGG | + | chr3.3:89493073-89493092 | MS.gene40352:CDS | 40.0% |
| !!! | CTCTGTTTTTACCCTTCACA+TGG | - | chr3.3:89492094-89492113 | None:intergenic | 40.0% |
| !!! | TTTTTTGCCAAATACCTCCC+TGG | + | chr3.3:89491376-89491395 | MS.gene40352:intron | 40.0% |
| AAAAAGGCCAAATACCTCCC+TGG | - | chr3.3:89491638-89491657 | None:intergenic | 45.0% | |
| AAAAGGCCAAATACCTCCCT+GGG | - | chr3.3:89491637-89491656 | None:intergenic | 45.0% | |
| AATTCAAGCAGCCGTTGGAT+TGG | + | chr3.3:89489970-89489989 | MS.gene40352:intron | 45.0% | |
| AGAGAGAAGAGTTTACCGGT+AGG | - | chr3.3:89489158-89489177 | None:intergenic | 45.0% | |
| AGGCACTATTATTTCCCTGC+AGG | - | chr3.3:89493340-89493359 | None:intergenic | 45.0% | |
| AGTGTGAACGCATGACTTTG+GGG | + | chr3.3:89489759-89489778 | MS.gene40352:intron | 45.0% | |
| AGTTTACCGGTAGGAGAGTT+TGG | - | chr3.3:89489149-89489168 | None:intergenic | 45.0% | |
| ATTTCCCTGCAGGACATTGA+TGG | - | chr3.3:89493330-89493349 | None:intergenic | 45.0% | |
| CAATGATGTCGTCGACAATG+GGG | + | chr3.3:89493430-89493449 | MS.gene40352:CDS | 45.0% | |
| CAGCCATCTATTTATGGCAC+TGG | + | chr3.3:89492308-89492327 | MS.gene40352:CDS | 45.0% | |
| CTAATTGTGAGTCAGCCAAG+AGG | + | chr3.3:89492679-89492698 | MS.gene40352:CDS | 45.0% | |
| CTAGTGTGAACGCATGACTT+TGG | + | chr3.3:89489757-89489776 | MS.gene40352:intron | 45.0% | |
| GAGACAATTTCTCATGCAGG+AGG | + | chr3.3:89491698-89491717 | MS.gene40352:intron | 45.0% | |
| GATTCATTATCCTCGTCGGA+TGG | - | chr3.3:89492507-89492526 | None:intergenic | 45.0% | |
| GGAATCCTACCATGCAGTTT+GGG | + | chr3.3:89489243-89489262 | MS.gene40352:intron | 45.0% | |
| GGTGAAGTTAGCTGAGGATA+TGG | + | chr3.3:89493181-89493200 | MS.gene40352:intron | 45.0% | |
| GTATCCAAGTCTTGCCGATA+CGG | + | chr3.3:89489089-89489108 | MS.gene40352:CDS | 45.0% | |
| GTGCACAATTCGAATCTTGC+TGG | + | chr3.3:89493383-89493402 | MS.gene40352:CDS | 45.0% | |
| TCCGACGAGGATAATGAATC+AGG | + | chr3.3:89492507-89492526 | MS.gene40352:CDS | 45.0% | |
| TCGCTCAACGCTTACTTAAC+CGG | + | chr3.3:89489272-89489291 | MS.gene40352:intron | 45.0% | |
| TCTTGCTGGGTTTGGAAACT+TGG | + | chr3.3:89493397-89493416 | MS.gene40352:CDS | 45.0% | |
| TGGAATCCTACCATGCAGTT+TGG | + | chr3.3:89489242-89489261 | MS.gene40352:intron | 45.0% | |
| ! | AACAACGACCGGTTTACGTT+AGG | - | chr3.3:89490687-89490706 | None:intergenic | 45.0% |
| ! | CAAGACAAGATTCTTGGTGC+TGG | - | chr3.3:89489862-89489881 | None:intergenic | 45.0% |
| ! | CTGGTAGTCATGTTGAGTTG+TGG | - | chr3.3:89493278-89493297 | None:intergenic | 45.0% |
| ! | TTGATGGTTGGCGAAACATG+TGG | - | chr3.3:89493314-89493333 | None:intergenic | 45.0% |
| ! | TTTTCTCCACCTTGACCTCT+TGG | - | chr3.3:89492697-89492716 | None:intergenic | 45.0% |
| !! | AGCACTGATGGTGGAATGTT+TGG | - | chr3.3:89492276-89492295 | None:intergenic | 45.0% |
| !! | GCACTGATGGTGGAATGTTT+GGG | - | chr3.3:89492275-89492294 | None:intergenic | 45.0% |
| !!! | GTCTTGCTCTCTTTTGGAGT+TGG | + | chr3.3:89489804-89489823 | MS.gene40352:intron | 45.0% |
| !!! | AATATGTTAATTTTTTTTTT+AGG | - | chr3.3:89490336-89490355 | None:intergenic | 5.0% |
| !!! | ATTTTTACTTATATATAATT+TGG | - | chr3.3:89489457-89489476 | None:intergenic | 5.0% |
| ATGAAGGGGGAGAGATAGAG+AGG | + | chr3.3:89490379-89490398 | MS.gene40352:intron | 50.0% | |
| CCAACCATCAATGTCCTGCA+GGG | + | chr3.3:89493323-89493342 | MS.gene40352:CDS | 50.0% | |
| CGCTTTCCAAACTCTCCTAC+CGG | + | chr3.3:89489140-89489159 | MS.gene40352:CDS | 50.0% | |
| CGGTAGGAGAGTTTGGAAAG+CGG | - | chr3.3:89489142-89489161 | None:intergenic | 50.0% | |
| GAAACTTAAAGGACCCAGGG+AGG | + | chr3.3:89491621-89491640 | MS.gene40352:intron | 50.0% | |
| GAAACTTAAAGGACCCAGGG+AGG | - | chr3.3:89491640-89491621 | None:intergenic | 50.0% | |
| GGTCATGAATGCCTCCGTAT+CGG | - | chr3.3:89489106-89489125 | None:intergenic | 50.0% | |
| GTGTGAACGCATGACTTTGG+GGG | + | chr3.3:89489760-89489779 | MS.gene40352:intron | 50.0% | |
| TAGGAGAGTTTGGAAAGCGG+CGG | - | chr3.3:89489139-89489158 | None:intergenic | 50.0% | |
| TTCATCTGATCCATCCGACG+AGG | + | chr3.3:89492494-89492513 | MS.gene40352:CDS | 50.0% | |
| TTGGCGAAACATGTGGCATG+CGG | - | chr3.3:89493307-89493326 | None:intergenic | 50.0% | |
| !! | AAAGGACCCAGGGAGGTATT+TGG | + | chr3.3:89491628-89491647 | MS.gene40352:intron | 50.0% |
| !! | AAAGGACCCAGGGAGGTATT+TGG | - | chr3.3:89491647-89491628 | None:intergenic | 50.0% |
| !! | GATACGGAGGCATTCATGAC+CGG | + | chr3.3:89489105-89489124 | MS.gene40352:CDS | 50.0% |
| AACCGCAACACCACCGTATG+AGG | - | chr3.3:89493360-89493379 | None:intergenic | 55.0% | |
| AAGGGGGAGAGATAGAGAGG+AGG | + | chr3.3:89490382-89490401 | MS.gene40352:intron | 55.0% | |
| AGGGGGAGAGATAGAGAGGA+GGG | + | chr3.3:89490383-89490402 | MS.gene40352:intron | 55.0% | |
| AGTCAGCCAAGAGGTCAAGG+TGG | + | chr3.3:89492688-89492707 | MS.gene40352:CDS | 55.0% | |
| AGTGTGAGGTAGGGAGAGAG+GGG | + | chr3.3:89490406-89490425 | MS.gene40352:intron | 55.0% | |
| ATGTGGCATGCGGCGAATAC+TGG | - | chr3.3:89493297-89493316 | None:intergenic | 55.0% | |
| CCTACCATGCAGTTTGGGTG+AGG | + | chr3.3:89489248-89489267 | MS.gene40352:intron | 55.0% | |
| CCTCACCCAAACTGCATGGT+AGG | - | chr3.3:89489251-89489270 | None:intergenic | 55.0% | |
| CGATCCTCACCCAAACTGCA+TGG | - | chr3.3:89489255-89489274 | None:intergenic | 55.0% | |
| GAGTGTGAGGTAGGGAGAGA+GGG | + | chr3.3:89490405-89490424 | MS.gene40352:intron | 55.0% | |
| GCCAACCATCAATGTCCTGC+AGG | + | chr3.3:89493322-89493341 | MS.gene40352:CDS | 55.0% | |
| GTGAGTCAGCCAAGAGGTCA+AGG | + | chr3.3:89492685-89492704 | MS.gene40352:CDS | 55.0% | |
| TCCAAGTCTTGCCGATACGG+AGG | + | chr3.3:89489092-89489111 | MS.gene40352:CDS | 55.0% | |
| ! | AACGCATGACTTTGGGGGTG+TGG | + | chr3.3:89489765-89489784 | MS.gene40352:intron | 55.0% |
| ! | ACGCATGACTTTGGGGGTGT+GGG | + | chr3.3:89489766-89489785 | MS.gene40352:intron | 55.0% |
| ! | AGAGGAGGGAGTGTGAGGTA+GGG | + | chr3.3:89490397-89490416 | MS.gene40352:intron | 55.0% |
| ! | CCCTGCAGGACATTGATGGT+TGG | - | chr3.3:89493326-89493345 | None:intergenic | 55.0% |
| ! | GATAGAGAGGAGGGAGTGTG+AGG | + | chr3.3:89490392-89490411 | MS.gene40352:intron | 55.0% |
| ! | TCAAGCAGCCGTTGGATTGG+TGG | + | chr3.3:89489973-89489992 | MS.gene40352:intron | 55.0% |
| ! | TGCCTCATACGGTGGTGTTG+CGG | + | chr3.3:89493355-89493374 | MS.gene40352:CDS | 55.0% |
| !! | TCATACGGTGGTGTTGCGGT+TGG | + | chr3.3:89493359-89493378 | MS.gene40352:CDS | 55.0% |
| GAAAGCGGCGGAGCAAACTC+CGG | - | chr3.3:89489127-89489146 | None:intergenic | 60.0% | |
| GGAGTGTGAGGTAGGGAGAG+AGG | + | chr3.3:89490404-89490423 | MS.gene40352:intron | 60.0% | |
| GTGTGAGGTAGGGAGAGAGG+GGG | + | chr3.3:89490407-89490426 | MS.gene40352:intron | 60.0% | |
| ! | GAGAGGAGGGAGTGTGAGGT+AGG | + | chr3.3:89490396-89490415 | MS.gene40352:intron | 60.0% |
| ! | GCCTCCGTATCGGCAAGACT+TGG | - | chr3.3:89489096-89489115 | None:intergenic | 60.0% |
| GAGGTAGGGAGAGAGGGGGA+GGG | + | chr3.3:89490411-89490430 | MS.gene40352:intron | 65.0% | |
| TGAGGTAGGGAGAGAGGGGG+AGG | + | chr3.3:89490410-89490429 | MS.gene40352:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 89489033 | 89493493 | 89489033 | ID=MS.gene40352 |
| chr3.3 | mRNA | 89489033 | 89493493 | 89489033 | ID=MS.gene40352.t1;Parent=MS.gene40352 |
| chr3.3 | exon | 89489033 | 89489161 | 89489033 | ID=MS.gene40352.t1.exon1;Parent=MS.gene40352.t1 |
| chr3.3 | CDS | 89489033 | 89489161 | 89489033 | ID=cds.MS.gene40352.t1;Parent=MS.gene40352.t1 |
| chr3.3 | exon | 89492215 | 89492329 | 89492215 | ID=MS.gene40352.t1.exon2;Parent=MS.gene40352.t1 |
| chr3.3 | CDS | 89492215 | 89492329 | 89492215 | ID=cds.MS.gene40352.t1;Parent=MS.gene40352.t1 |
| chr3.3 | exon | 89492427 | 89492577 | 89492427 | ID=MS.gene40352.t1.exon3;Parent=MS.gene40352.t1 |
| chr3.3 | CDS | 89492427 | 89492577 | 89492427 | ID=cds.MS.gene40352.t1;Parent=MS.gene40352.t1 |
| chr3.3 | exon | 89492671 | 89492746 | 89492671 | ID=MS.gene40352.t1.exon4;Parent=MS.gene40352.t1 |
| chr3.3 | CDS | 89492671 | 89492746 | 89492671 | ID=cds.MS.gene40352.t1;Parent=MS.gene40352.t1 |
| chr3.3 | exon | 89492969 | 89493094 | 89492969 | ID=MS.gene40352.t1.exon5;Parent=MS.gene40352.t1 |
| chr3.3 | CDS | 89492969 | 89493094 | 89492969 | ID=cds.MS.gene40352.t1;Parent=MS.gene40352.t1 |
| chr3.3 | exon | 89493182 | 89493493 | 89493182 | ID=MS.gene40352.t1.exon6;Parent=MS.gene40352.t1 |
| chr3.3 | CDS | 89493182 | 89493493 | 89493182 | ID=cds.MS.gene40352.t1;Parent=MS.gene40352.t1 |
| Gene Sequence |
| Protein sequence |
