Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061565.t1 | RHN68080.1 | 98.8 | 508 | 6 | 0 | 1 | 508 | 1 | 508 | 2.20E-294 | 1020.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061565.t1 | Q42521 | 84.3 | 510 | 70 | 4 | 1 | 508 | 1 | 502 | 1.1e-249 | 863.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061565.t1 | A0A396IRV4 | 98.8 | 508 | 6 | 0 | 1 | 508 | 1 | 508 | 1.6e-294 | 1020.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049259 | MS.gene061565 | 0.812099 | 5.03E-51 | -1.69E-46 |
| MS.gene049611 | MS.gene061565 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene049634 | MS.gene061565 | 0.812046 | 5.16E-51 | -1.69E-46 |
| MS.gene049710 | MS.gene061565 | 0.81643 | 5.55E-52 | -1.69E-46 |
| MS.gene05015 | MS.gene061565 | 0.882051 | 1.44E-70 | -1.69E-46 |
| MS.gene050381 | MS.gene061565 | 0.82976 | 4.30E-55 | -1.69E-46 |
| MS.gene05096 | MS.gene061565 | 0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene051044 | MS.gene061565 | 0.82857 | 8.35E-55 | -1.69E-46 |
| MS.gene051127 | MS.gene061565 | 0.825897 | 3.65E-54 | -1.69E-46 |
| MS.gene051138 | MS.gene061565 | 0.844487 | 7.33E-59 | -1.69E-46 |
| MS.gene052802 | MS.gene061565 | 0.80949 | 1.84E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene061565 | 0.833054 | 6.65E-56 | -1.69E-46 |
| MS.gene053488 | MS.gene061565 | 0.815264 | 1.01E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene061565 | 0.835721 | 1.42E-56 | -1.69E-46 |
| MS.gene054056 | MS.gene061565 | 0.808722 | 2.69E-50 | -1.69E-46 |
| MS.gene055124 | MS.gene061565 | 0.807863 | 4.11E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene061565 | 0.839837 | 1.25E-57 | -1.69E-46 |
| MS.gene055942 | MS.gene061565 | 0.829364 | 5.37E-55 | -1.69E-46 |
| MS.gene056224 | MS.gene061565 | 0.802259 | 6.11E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene061565 | 0.836241 | 1.05E-56 | -1.69E-46 |
| MS.gene057549 | MS.gene061565 | 0.835176 | 1.95E-56 | -1.69E-46 |
| MS.gene058093 | MS.gene061565 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene061565 | 0.8571 | 2.05E-62 | -1.69E-46 |
| MS.gene058109 | MS.gene061565 | 0.82299 | 1.76E-53 | -1.69E-46 |
| MS.gene058111 | MS.gene061565 | 0.801996 | 6.92E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene061565 | 0.818363 | 2.04E-52 | -1.69E-46 |
| MS.gene058173 | MS.gene061565 | 0.821613 | 3.68E-53 | -1.69E-46 |
| MS.gene058175 | MS.gene061565 | 0.829683 | 4.49E-55 | -1.69E-46 |
| MS.gene058493 | MS.gene061565 | 0.801271 | 9.74E-49 | -1.69E-46 |
| MS.gene058840 | MS.gene061565 | 0.806851 | 6.73E-50 | -1.69E-46 |
| MS.gene059038 | MS.gene061565 | 0.805368 | 1.38E-49 | -1.69E-46 |
| MS.gene059690 | MS.gene061565 | 0.84712 | 1.41E-59 | -1.69E-46 |
| MS.gene059691 | MS.gene061565 | 0.818075 | 2.37E-52 | -1.69E-46 |
| MS.gene059694 | MS.gene061565 | 0.849967 | 2.30E-60 | -1.69E-46 |
| MS.gene059697 | MS.gene061565 | 0.848935 | 4.46E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061565.t1 | MTR_3g064740 | 98.425 | 508 | 8 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1039 |
| MS.gene061565.t1 | MTR_5g077090 | 84.168 | 499 | 73 | 3 | 11 | 508 | 2 | 495 | 0.0 | 874 |
| MS.gene061565.t1 | MTR_3g064740 | 98.063 | 413 | 8 | 0 | 96 | 508 | 1 | 413 | 0.0 | 842 |
| MS.gene061565.t1 | MTR_6g075210 | 74.755 | 511 | 114 | 4 | 1 | 508 | 1 | 499 | 0.0 | 785 |
| MS.gene061565.t1 | MTR_6g075210 | 72.751 | 378 | 91 | 2 | 131 | 508 | 1 | 366 | 0.0 | 567 |
| MS.gene061565.t1 | MTR_6g075210 | 70.227 | 309 | 86 | 1 | 190 | 498 | 1 | 303 | 6.57e-158 | 451 |
| MS.gene061565.t1 | MTR_7g022310 | 25.275 | 364 | 240 | 11 | 81 | 433 | 157 | 499 | 4.81e-24 | 105 |
| MS.gene061565.t1 | MTR_5g075840 | 46.914 | 81 | 43 | 0 | 372 | 452 | 48 | 128 | 3.39e-16 | 76.3 |
| MS.gene061565.t1 | MTR_5g075820 | 62.069 | 58 | 19 | 1 | 252 | 309 | 15 | 69 | 4.17e-15 | 73.2 |
| MS.gene061565.t1 | MTR_3g064750 | 79.545 | 44 | 9 | 0 | 464 | 507 | 5 | 48 | 1.24e-14 | 73.2 |
| MS.gene061565.t1 | MTR_3g064750 | 79.545 | 44 | 9 | 0 | 464 | 507 | 5 | 48 | 8.07e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061565.t1 | AT5G17330 | 84.314 | 510 | 70 | 4 | 1 | 508 | 1 | 502 | 0.0 | 883 |
| MS.gene061565.t1 | AT2G02010 | 81.299 | 508 | 80 | 4 | 1 | 508 | 53 | 545 | 0.0 | 859 |
| MS.gene061565.t1 | AT2G02010 | 81.299 | 508 | 80 | 4 | 1 | 508 | 1 | 493 | 0.0 | 858 |
| MS.gene061565.t1 | AT1G65960 | 80.709 | 508 | 84 | 4 | 1 | 508 | 1 | 494 | 0.0 | 844 |
| MS.gene061565.t1 | AT2G02000 | 80.242 | 496 | 82 | 3 | 1 | 494 | 1 | 482 | 0.0 | 835 |
| MS.gene061565.t1 | AT3G17760 | 74.800 | 500 | 118 | 3 | 1 | 500 | 1 | 492 | 0.0 | 786 |
| MS.gene061565.t1 | AT3G17760 | 74.800 | 500 | 118 | 3 | 1 | 500 | 1 | 492 | 0.0 | 786 |
| MS.gene061565.t1 | AT1G65960 | 80.423 | 378 | 61 | 3 | 131 | 508 | 1 | 365 | 0.0 | 627 |
| MS.gene061565.t1 | AT1G65960 | 80.423 | 378 | 61 | 3 | 131 | 508 | 1 | 365 | 0.0 | 627 |
| MS.gene061565.t1 | AT1G65960 | 80.423 | 378 | 61 | 3 | 131 | 508 | 1 | 365 | 0.0 | 627 |
| MS.gene061565.t1 | AT3G17720 | 75.309 | 162 | 37 | 1 | 91 | 252 | 27 | 185 | 3.12e-82 | 254 |
| MS.gene061565.t1 | AT1G27980 | 24.444 | 360 | 244 | 10 | 81 | 431 | 160 | 500 | 8.10e-20 | 93.2 |
Find 124 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCATCGTTTATTATT+TGG | 0.136280 | 3.2:-60224563 | None:intergenic |
| CTGGAATTGGTTGGGCTATT+TGG | 0.152853 | 3.2:+60228598 | MS.gene061565:CDS |
| GTCAACGTAGTTCTTGTTAA+TGG | 0.200680 | 3.2:-60224670 | None:intergenic |
| TCGAGTTCTGGATAAATAAA+TGG | 0.285822 | 3.2:-60228507 | None:intergenic |
| CGGAAATCCCACTCGAGTTC+TGG | 0.298635 | 3.2:-60228519 | None:intergenic |
| GTTGAAAAGAATAAGGAAAC+TGG | 0.312144 | 3.2:+60228323 | MS.gene061565:CDS |
| TCTCCTTGTTGAAAAGAATA+AGG | 0.326676 | 3.2:+60228316 | MS.gene061565:CDS |
| ATTTGGTATGCTGCATCCTT+TGG | 0.329291 | 3.2:-60224546 | None:intergenic |
| TTCATCTTGTGAAGGTTTGC+TGG | 0.332127 | 3.2:+60228117 | MS.gene061565:intron |
| ACCAATTCCACAGCCTTTGC+AGG | 0.337050 | 3.2:-60228212 | None:intergenic |
| GCAGTTGGTGTTGGCACTGT+TGG | 0.345197 | 3.2:+60227904 | MS.gene061565:CDS |
| AACGATGAATTGATGCTTGA+TGG | 0.349990 | 3.2:+60224573 | MS.gene061565:CDS |
| AGAGAGAAATTACTGCGATT+TGG | 0.357715 | 3.2:+60229641 | MS.gene061565:CDS |
| CATGAAGTTGTGAAAGATAA+TGG | 0.363997 | 3.2:+60229580 | MS.gene061565:CDS |
| TCCGACTTGTTGAGGCGCTT+CGG | 0.376346 | 3.2:+60229367 | MS.gene061565:CDS |
| ATGTGAAAGATGAGTTCTTC+AGG | 0.384157 | 3.2:-60228639 | None:intergenic |
| AAGGATGCCAAGTTCAATCT+AGG | 0.384483 | 3.2:-60224600 | None:intergenic |
| ACGGTTATGTGTTGAGCATC+CGG | 0.387398 | 3.2:-60229418 | None:intergenic |
| ATTTGTGTTGCTGCTATCCT+TGG | 0.389399 | 3.2:+60228248 | MS.gene061565:CDS |
| GGTCTTGTCTATGCTGGAAT+TGG | 0.394287 | 3.2:+60228585 | MS.gene061565:CDS |
| GGCTATAATGTTAGCTGGAT+TGG | 0.399926 | 3.2:+60227936 | MS.gene061565:CDS |
| CCCTGCAAAGGCTGTGGAAT+TGG | 0.401960 | 3.2:+60228211 | MS.gene061565:CDS |
| ACAATGTTGGGTTTGTCATA+AGG | 0.406582 | 3.2:-60228003 | None:intergenic |
| ACCTGTAGCTCAGTGGTGAC+AGG | 0.410531 | 3.2:-60224705 | None:intergenic |
| AATGTTAGTGGTCACAAATA+TGG | 0.413799 | 3.2:+60228564 | MS.gene061565:CDS |
| CCCTGTCACCACTGAGCTAC+AGG | 0.419735 | 3.2:+60224704 | MS.gene061565:CDS |
| CTAGCTGCATCCACATGAAT+AGG | 0.423113 | 3.2:-60228468 | None:intergenic |
| CCTAATGACAACGCGTAAAA+CGG | 0.423881 | 3.2:-60229437 | None:intergenic |
| TTGTCTATGCTGGAATTGGT+TGG | 0.426198 | 3.2:+60228589 | MS.gene061565:CDS |
| TGTCTATGCTGGAATTGGTT+GGG | 0.432578 | 3.2:+60228590 | MS.gene061565:CDS |
| TGGCATCCTTTGTCACAACT+TGG | 0.437750 | 3.2:+60224613 | MS.gene061565:CDS |
| TTGGCGCCAGTGACAATGTT+GGG | 0.437797 | 3.2:-60228015 | None:intergenic |
| ACTAATACGTCTTGGTTATG+AGG | 0.453134 | 3.2:+60229086 | MS.gene061565:CDS |
| ATCCTTGGTTCCACACTCAA+TGG | 0.468510 | 3.2:+60228263 | MS.gene061565:CDS |
| CTTTGAAGTGGAATTGAAAG+AGG | 0.469636 | 3.2:+60228157 | MS.gene061565:CDS |
| TTTAGTGGCCTTCACATTGA+AGG | 0.469713 | 3.2:+60229315 | MS.gene061565:CDS |
| AAATATGGTCTTGTCTATGC+TGG | 0.473013 | 3.2:+60228579 | MS.gene061565:CDS |
| AGACGACGGTGTACCTTTAG+TGG | 0.473432 | 3.2:+60229300 | MS.gene061565:CDS |
| CGGTTATGTGTTGAGCATCC+GGG | 0.487789 | 3.2:-60229417 | None:intergenic |
| TAGCTGGATTGGCATTCAAA+AGG | 0.488770 | 3.2:+60227947 | MS.gene061565:CDS |
| GGAAGAAGTTTGTGATGGAT+AGG | 0.490629 | 3.2:+60229662 | MS.gene061565:CDS |
| ATCTTTCACATCAACTATCT+AGG | 0.491229 | 3.2:+60228651 | MS.gene061565:CDS |
| ATGTCAGAACTTCACTTCCT+AGG | 0.491432 | 3.2:+60224254 | MS.gene061565:CDS |
| GTGGGATTTCCGCTTACCAT+TGG | 0.491732 | 3.2:+60228530 | MS.gene061565:CDS |
| GTGAAGAGTATCAATGTTAG+TGG | 0.498190 | 3.2:+60228552 | MS.gene061565:CDS |
| GTTACCTTTGGAGAAGTTGA+GGG | 0.499919 | 3.2:-60228694 | None:intergenic |
| GAGAAGTTGAGGGTAAAGGT+AGG | 0.503154 | 3.2:-60228684 | None:intergenic |
| ACTTGTTGAGGCGCTTCGGA+TGG | 0.503654 | 3.2:+60229371 | MS.gene061565:CDS |
| TGGAAACCCTAGATTGAACT+TGG | 0.505999 | 3.2:+60224593 | MS.gene061565:CDS |
| TCATCTTGTGAAGGTTTGCT+GGG | 0.509995 | 3.2:+60228118 | MS.gene061565:intron |
| TCAGAGGCTATAATGTTAGC+TGG | 0.510971 | 3.2:+60227931 | MS.gene061565:CDS |
| CATAACCAAGACGTATTAGT+TGG | 0.512214 | 3.2:-60229083 | None:intergenic |
| CAACATGATAGTACTAAAAG+AGG | 0.514647 | 3.2:+60229240 | MS.gene061565:CDS |
| TTCAAATCTCCGACTTGTTG+AGG | 0.514940 | 3.2:+60229359 | MS.gene061565:CDS |
| TTTGGAGAAGTTGAGGGTAA+AGG | 0.515641 | 3.2:-60228688 | None:intergenic |
| TGTCACTGGCGCCAATGTCC+AGG | 0.516560 | 3.2:+60228023 | MS.gene061565:CDS |
| TGTTACCTTTGGAGAAGTTG+AGG | 0.521918 | 3.2:-60228695 | None:intergenic |
| ATTTGCAAGGTACTTTGAAG+TGG | 0.524328 | 3.2:+60228145 | MS.gene061565:CDS |
| TTCAATGTGAAGGCCACTAA+AGG | 0.525915 | 3.2:-60229313 | None:intergenic |
| TCCTTTGGTATAGACTCGTC+TGG | 0.527615 | 3.2:-60224531 | None:intergenic |
| ATATATATGTACCTGGACAT+TGG | 0.534238 | 3.2:-60228034 | None:intergenic |
| GGTAGTATTGAGCAATGACT+TGG | 0.536048 | 3.2:-60229062 | None:intergenic |
| AAGGATAGCAGCAACACAAA+TGG | 0.537691 | 3.2:-60228246 | None:intergenic |
| TACTACCAACTAATACGTCT+TGG | 0.539700 | 3.2:+60229078 | MS.gene061565:CDS |
| TGCACCACTTAAAGAAAATG+AGG | 0.543644 | 3.2:+60227879 | MS.gene061565:CDS |
| GACAAACCCAACATTGTCAC+TGG | 0.545692 | 3.2:+60228009 | MS.gene061565:CDS |
| ATCCTTTGTCACAACTTGGA+TGG | 0.547848 | 3.2:+60224617 | MS.gene061565:CDS |
| GAAATTCATCAAAGTTTGTG+TGG | 0.556299 | 3.2:-60229339 | None:intergenic |
| AAAGAGGTTAAGCTAAGTGA+AGG | 0.559738 | 3.2:+60228173 | MS.gene061565:CDS |
| CCTGTAGCTCAGTGGTGACA+GGG | 0.561624 | 3.2:-60224704 | None:intergenic |
| AAGTGAAGGATACTATGTAA+TGG | 0.565226 | 3.2:+60228187 | MS.gene061565:CDS |
| GATTGGCATTCAAAAGGAAG+TGG | 0.569504 | 3.2:+60227953 | MS.gene061565:CDS |
| AGGATGCCAAGTTCAATCTA+GGG | 0.569848 | 3.2:-60224599 | None:intergenic |
| AAAGAAAATGAGGCTGCAGT+TGG | 0.571389 | 3.2:+60227889 | MS.gene061565:CDS |
| TATTTATCCAGAACTCGAGT+GGG | 0.578175 | 3.2:+60228512 | MS.gene061565:CDS |
| TGAGTGTGATAAACTCATCA+TGG | 0.579495 | 3.2:+60224644 | MS.gene061565:CDS |
| CCAATTCCACAGCCTTTGCA+GGG | 0.581974 | 3.2:-60228211 | None:intergenic |
| AGCGGGAAGCAAAGGTTGAG+TGG | 0.584467 | 3.2:-60224231 | None:intergenic |
| TCCAGCATACAGCATGCCCC+CGG | 0.584797 | 3.2:+60229399 | MS.gene061565:CDS |
| CTCCATTGAGTGTGGAACCA+AGG | 0.585360 | 3.2:-60228265 | None:intergenic |
| GGAAGCAAAGGTTGAGTGGA+CGG | 0.585475 | 3.2:-60224227 | None:intergenic |
| TTTACCCTCAACTTCTCCAA+AGG | 0.585575 | 3.2:+60228690 | MS.gene061565:CDS |
| AATGGACCCTGCAAAGGCTG+TGG | 0.586544 | 3.2:+60228205 | MS.gene061565:CDS |
| GGTTATGTGTTGAGCATCCG+GGG | 0.589154 | 3.2:-60229416 | None:intergenic |
| CTATGTAATGGACCCTGCAA+AGG | 0.589522 | 3.2:+60228199 | MS.gene061565:CDS |
| GCGAGGATAAAGATGATAAG+TGG | 0.592545 | 3.2:+60229538 | MS.gene061565:CDS |
| TGGCACTGTTGGCTCATCAG+AGG | 0.595925 | 3.2:+60227915 | MS.gene061565:CDS |
| AAGTGAAGTTCTGACATAGC+GGG | 0.596432 | 3.2:-60224248 | None:intergenic |
| GCAGAACAAAAGAAAACTAG+AGG | 0.597240 | 3.2:+60227975 | MS.gene061565:CDS |
| TCTGACATAGCGGGAAGCAA+AGG | 0.597769 | 3.2:-60224239 | None:intergenic |
| AATGAGGCTGCAGTTGGTGT+TGG | 0.597938 | 3.2:+60227895 | MS.gene061565:CDS |
| AAGTTGAATGATAAGATGAA+TGG | 0.598555 | 3.2:+60229688 | MS.gene061565:CDS |
| CATGTGGATGCAGCTAGTGG+TGG | 0.599570 | 3.2:+60228474 | MS.gene061565:CDS |
| TTATTTATCCAGAACTCGAG+TGG | 0.603826 | 3.2:+60228511 | MS.gene061565:CDS |
| ATTGGCGCCAGTGACAATGT+TGG | 0.605961 | 3.2:-60228016 | None:intergenic |
| TTCGAACTCTCCATTGAGTG+TGG | 0.606835 | 3.2:-60228273 | None:intergenic |
| CTTTCTCTATATCAGCTACA+AGG | 0.608061 | 3.2:-60229489 | None:intergenic |
| TTGGGCTATTTGGAGAAGCA+AGG | 0.608130 | 3.2:+60228608 | MS.gene061565:CDS |
| CTCCATCCAAGTTGTGACAA+AGG | 0.609170 | 3.2:-60224619 | None:intergenic |
| TCATTAGGGAGGATTTCTCA+AGG | 0.609229 | 3.2:+60229452 | MS.gene061565:CDS |
| TTTACGCGTTGTCATTAGGG+AGG | 0.614957 | 3.2:+60229441 | MS.gene061565:CDS |
| TACTCTTCACCAATGGTAAG+CGG | 0.619728 | 3.2:-60228539 | None:intergenic |
| TAACAAGAACTACGTTGACA+TGG | 0.621311 | 3.2:+60224674 | MS.gene061565:CDS |
| TTGAAAAGAATAAGGAAACT+GGG | 0.621388 | 3.2:+60228324 | MS.gene061565:CDS |
| AACATGATAGTACTAAAAGA+GGG | 0.624331 | 3.2:+60229241 | MS.gene061565:CDS |
| ATGGGACACTCCTATTCATG+TGG | 0.625531 | 3.2:+60228458 | MS.gene061565:CDS |
| ATTCATGTGGATGCAGCTAG+TGG | 0.626108 | 3.2:+60228471 | MS.gene061565:CDS |
| TCCGAAGCGCCTCAACAAGT+CGG | 0.626271 | 3.2:-60229368 | None:intergenic |
| GCCAGACGAGTCTATACCAA+AGG | 0.629537 | 3.2:+60224530 | MS.gene061565:CDS |
| ATGATGAGTTTATCACACTC+AGG | 0.633349 | 3.2:-60224642 | None:intergenic |
| TGTGTGGTCCTTCAATGTGA+AGG | 0.636795 | 3.2:-60229323 | None:intergenic |
| ACATTGATACTCTTCACCAA+TGG | 0.659392 | 3.2:-60228546 | None:intergenic |
| GGCTGTCTTTGAGAGAACCA+TGG | 0.660529 | 3.2:-60224188 | None:intergenic |
| GAAAGATAATGGTCAAGTAG+TGG | 0.665686 | 3.2:+60229591 | MS.gene061565:CDS |
| GATTTGGAAGAAGTTTGTGA+TGG | 0.665700 | 3.2:+60229657 | MS.gene061565:CDS |
| TTTGCTGGGAGAAATTTGCA+AGG | 0.669842 | 3.2:+60228132 | MS.gene061565:CDS |
| GTGGACGGAAACATCAGACT+CGG | 0.670695 | 3.2:-60224212 | None:intergenic |
| CAGAACAAAAGAAAACTAGA+GGG | 0.676928 | 3.2:+60227976 | MS.gene061565:CDS |
| AACATTGTGTCGAAAGACGA+CGG | 0.682392 | 3.2:+60229286 | MS.gene061565:CDS |
| AGGGTCTACCTGTAGCTCAG+TGG | 0.683942 | 3.2:-60224712 | None:intergenic |
| AGCTTGATTCACTTACTGCG+AGG | 0.692666 | 3.2:+60229521 | MS.gene061565:CDS |
| GAAGTGAAGTTCTGACATAG+CGG | 0.697054 | 3.2:-60224249 | None:intergenic |
| GACGGAAACATCAGACTCGG+AGG | 0.705679 | 3.2:-60224209 | None:intergenic |
| GTTATGTGTTGAGCATCCGG+GGG | 0.743423 | 3.2:-60229415 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr3.2:60226139-60226158 | MS.gene061565:intron | 0.0% |
| !! | TAAATAAATATAAATATATA+TGG | - | chr3.2:60225846-60225865 | None:intergenic | 0.0% |
| !! | AAAATAAAAAATATTTATCG+GGG | + | chr3.2:60227325-60227344 | MS.gene061565:intron | 10.0% |
| !! | AATAAAATATATATAGAGAA+AGG | - | chr3.2:60226491-60226510 | None:intergenic | 10.0% |
| !! | ATAAAATATATATAGAGAAA+GGG | - | chr3.2:60226490-60226509 | None:intergenic | 10.0% |
| !! | ATATCATAAAATTAATTAGA+AGG | + | chr3.2:60226101-60226120 | MS.gene061565:intron | 10.0% |
| !! | ATTAATTGGAAAATTAAATA+TGG | - | chr3.2:60225651-60225670 | None:intergenic | 10.0% |
| !! | ATTTAATATATAACAATGAA+TGG | - | chr3.2:60226299-60226318 | None:intergenic | 10.0% |
| !! | CAAAATAAAAAATATTTATC+GGG | + | chr3.2:60227324-60227343 | MS.gene061565:intron | 10.0% |
| !! | CAATAAATAATTAATAGTTA+AGG | - | chr3.2:60225295-60225314 | None:intergenic | 10.0% |
| !! | GATATACATAATATTAATTA+AGG | + | chr3.2:60227351-60227370 | MS.gene061565:intron | 10.0% |
| !! | TTAATTGGAAAATTAAATAT+GGG | - | chr3.2:60225650-60225669 | None:intergenic | 10.0% |
| !!! | AACTTAAATTTTTTAATGTT+GGG | - | chr3.2:60226696-60226715 | None:intergenic | 10.0% |
| !!! | AATTTTTTAAAAAAGGAATT+GGG | - | chr3.2:60225229-60225248 | None:intergenic | 10.0% |
| !!! | TAATATTTTTAAGTTTTTGA+TGG | - | chr3.2:60225595-60225614 | None:intergenic | 10.0% |
| !!! | TTTTGTTTTGAAAATATTTT+AGG | + | chr3.2:60226430-60226449 | MS.gene061565:intron | 10.0% |
| !! | AAAATAAAATGATCAACATA+AGG | - | chr3.2:60224286-60224305 | None:intergenic | 15.0% |
| !! | AAAATTAAGAAATTACTCAA+TGG | - | chr3.2:60225256-60225275 | None:intergenic | 15.0% |
| !! | AATAAAAGAGAAGATATAAT+TGG | + | chr3.2:60225876-60225895 | MS.gene061565:intron | 15.0% |
| !! | AATGCATAATAATATATGTA+AGG | + | chr3.2:60225547-60225566 | MS.gene061565:intron | 15.0% |
| !! | AGCAATTTATATAACATTAA+AGG | + | chr3.2:60227395-60227414 | MS.gene061565:intron | 15.0% |
| !! | ATAAAAGAGAAGATATAATT+GGG | + | chr3.2:60225877-60225896 | MS.gene061565:intron | 15.0% |
| !! | ATAAACAAAAAGTAAGTAAA+AGG | - | chr3.2:60224750-60224769 | None:intergenic | 15.0% |
| !! | ATCTTTAATGAAGATTAATT+AGG | - | chr3.2:60227170-60227189 | None:intergenic | 15.0% |
| !! | CAAAAACTTAAAAATATTAG+TGG | + | chr3.2:60225596-60225615 | MS.gene061565:intron | 15.0% |
| !! | CTAAAATTGAAAAATACAAA+AGG | - | chr3.2:60225919-60225938 | None:intergenic | 15.0% |
| !! | TAACTTATAAAACAAAGAAA+AGG | - | chr3.2:60225707-60225726 | None:intergenic | 15.0% |
| !! | TAATTGGAAAATTAAATATG+GGG | - | chr3.2:60225649-60225668 | None:intergenic | 15.0% |
| !! | TATTAATTATTTATTGCACA+TGG | + | chr3.2:60225299-60225318 | MS.gene061565:intron | 15.0% |
| !! | TTTAATATATGCATCAATTA+AGG | - | chr3.2:60224966-60224985 | None:intergenic | 15.0% |
| !!! | AATTTTCGTTTATTTGTTAT+TGG | - | chr3.2:60227597-60227616 | None:intergenic | 15.0% |
| !!! | ACTTAAATTTTTTAATGTTG+GGG | - | chr3.2:60226695-60226714 | None:intergenic | 15.0% |
| !!! | ACTTTAACTGTTTTTTTTTT+TGG | - | chr3.2:60226753-60226772 | None:intergenic | 15.0% |
| !!! | ATTTCTTAATTTTTGTTTTG+TGG | + | chr3.2:60225263-60225282 | MS.gene061565:intron | 15.0% |
| !!! | ATTTTTTAAAAAAGGAATTG+GGG | - | chr3.2:60225228-60225247 | None:intergenic | 15.0% |
| !!! | CAACTTAAATTTTTTAATGT+TGG | - | chr3.2:60226697-60226716 | None:intergenic | 15.0% |
| !!! | CAATTTTTTAAAAAAGGAAT+TGG | - | chr3.2:60225230-60225249 | None:intergenic | 15.0% |
| !!! | CTAAATATTTGTTATAAAGA+TGG | - | chr3.2:60226030-60226049 | None:intergenic | 15.0% |
| !!! | CTTTTGTATTTTTCAATTTT+AGG | + | chr3.2:60225917-60225936 | MS.gene061565:intron | 15.0% |
| !!! | TCTTTTTATTAGATTAAATG+AGG | + | chr3.2:60227641-60227660 | MS.gene061565:intron | 15.0% |
| !!! | TGGAAACAATTTTTTAAAAA+AGG | - | chr3.2:60225236-60225255 | None:intergenic | 15.0% |
| !!! | TTTTCTTTGTTTTATAAGTT+AGG | + | chr3.2:60225706-60225725 | MS.gene061565:intron | 15.0% |
| !! | AAAAATAGATGTATAGGTAA+AGG | + | chr3.2:60226826-60226845 | MS.gene061565:intron | 20.0% |
| !! | AAAATGACAACTAAAAAAGA+AGG | + | chr3.2:60225474-60225493 | MS.gene061565:intron | 20.0% |
| !! | AATAATATATGTAAGGTCTA+GGG | + | chr3.2:60225554-60225573 | MS.gene061565:intron | 20.0% |
| !! | AATGCAAATTTATGGATTTA+AGG | - | chr3.2:60224435-60224454 | None:intergenic | 20.0% |
| !! | AATGTAAATGTTTGAATTTG+AGG | - | chr3.2:60226729-60226748 | None:intergenic | 20.0% |
| !! | ATAAAAAAATTTCAAGACTC+AGG | + | chr3.2:60227537-60227556 | MS.gene061565:intron | 20.0% |
| !! | ATGTAAATGTTTGAATTTGA+GGG | - | chr3.2:60226728-60226747 | None:intergenic | 20.0% |
| !! | CAAACAAAAAATAGATGTAT+AGG | + | chr3.2:60226820-60226839 | MS.gene061565:intron | 20.0% |
| !! | CATAGAAAAAAAAAAAGATG+AGG | + | chr3.2:60227711-60227730 | MS.gene061565:intron | 20.0% |
| !! | TAATAATATATGTAAGGTCT+AGG | + | chr3.2:60225553-60225572 | MS.gene061565:intron | 20.0% |
| !! | TAGTATTAAGAAACATATCA+TGG | + | chr3.2:60224806-60224825 | MS.gene061565:intron | 20.0% |
| !! | TATAATATGACAATGACTTA+CGG | - | chr3.2:60227215-60227234 | None:intergenic | 20.0% |
| !! | TATTACAACAAATCAAATGA+AGG | - | chr3.2:60224783-60224802 | None:intergenic | 20.0% |
| !! | TCAATTCATCGTTTATTATT+TGG | - | chr3.2:60224566-60224585 | None:intergenic | 20.0% |
| !! | TTCTTATTGATCAAAAACAA+TGG | + | chr3.2:60225050-60225069 | MS.gene061565:intron | 20.0% |
| !!! | AAATATTTTAGGTAGAATTG+TGG | + | chr3.2:60226441-60226460 | MS.gene061565:intron | 20.0% |
| !!! | AATATTTTAGGTAGAATTGT+GGG | + | chr3.2:60226442-60226461 | MS.gene061565:intron | 20.0% |
| !!! | ACATTTTATATATATGTACC+TGG | - | chr3.2:60228044-60228063 | None:intergenic | 20.0% |
| !!! | ACTACTTATCTTCTTTTTTT+TGG | - | chr3.2:60225378-60225397 | None:intergenic | 20.0% |
| !!! | AGATACTTAGAAGTATTATT+AGG | - | chr3.2:60226353-60226372 | None:intergenic | 20.0% |
| !!! | ATGAATCTTCAAAAAAGTTT+TGG | - | chr3.2:60229124-60229143 | None:intergenic | 20.0% |
| !!! | CTCATCTTTTTTTTTTTCTA+TGG | - | chr3.2:60227713-60227732 | None:intergenic | 20.0% |
| !!! | CTTAAATTTTTTAATGTTGG+GGG | - | chr3.2:60226694-60226713 | None:intergenic | 20.0% |
| !!! | GAATATTTTTTAATTGGTCA+TGG | - | chr3.2:60227775-60227794 | None:intergenic | 20.0% |
| !!! | GATACTTAGAAGTATTATTA+GGG | - | chr3.2:60226352-60226371 | None:intergenic | 20.0% |
| !!! | TAGCTTTTAAAACTTGAATT+TGG | - | chr3.2:60228955-60228974 | None:intergenic | 20.0% |
| !!! | TATTTAAACATTTCTTTTCC+TGG | + | chr3.2:60224894-60224913 | MS.gene061565:intron | 20.0% |
| !!! | TATTTTTAAGTTTTTGATGG+TGG | - | chr3.2:60225592-60225611 | None:intergenic | 20.0% |
| !!! | TCTTTTTTAGTTGTCATTTT+CGG | - | chr3.2:60225474-60225493 | None:intergenic | 20.0% |
| !!! | TTGAAGATTCATATTTTTCT+TGG | + | chr3.2:60229132-60229151 | MS.gene061565:intron | 20.0% |
| !!! | TTTTCAAAACAAAAATCACT+AGG | - | chr3.2:60226424-60226443 | None:intergenic | 20.0% |
| ! | AAATATATATGGCACTTGTA+AGG | - | chr3.2:60225835-60225854 | None:intergenic | 25.0% |
| ! | AACATGATAGTACTAAAAGA+GGG | + | chr3.2:60229241-60229260 | MS.gene061565:CDS | 25.0% |
| ! | AAGTTGAATGATAAGATGAA+TGG | + | chr3.2:60229688-60229707 | MS.gene061565:CDS | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr3.2:60225038-60225057 | None:intergenic | 25.0% |
| ! | AATATATATGGCACTTGTAA+GGG | - | chr3.2:60225834-60225853 | None:intergenic | 25.0% |
| ! | ACAAGATCAATGCAAATTTA+TGG | - | chr3.2:60224443-60224462 | None:intergenic | 25.0% |
| ! | AGCTATACATAATATATGCA+AGG | + | chr3.2:60225749-60225768 | MS.gene061565:intron | 25.0% |
| ! | ATAATATGACAATGACTTAC+GGG | - | chr3.2:60227214-60227233 | None:intergenic | 25.0% |
| ! | ATGAAATTCTTTGTGTAGAT+GGG | + | chr3.2:60228440-60228459 | MS.gene061565:intron | 25.0% |
| ! | GAGAGGAAATTAGATTAATA+AGG | - | chr3.2:60224933-60224952 | None:intergenic | 25.0% |
| ! | GATACATACTCATGTTAATT+AGG | - | chr3.2:60227573-60227592 | None:intergenic | 25.0% |
| ! | GGATAAGAAATAAATGCAAA+AGG | - | chr3.2:60227149-60227168 | None:intergenic | 25.0% |
| ! | GTCATTTGTAACATTATAGT+TGG | + | chr3.2:60226981-60227000 | MS.gene061565:intron | 25.0% |
| ! | GTTATACACTTATGATATTG+TGG | - | chr3.2:60226926-60226945 | None:intergenic | 25.0% |
| ! | TACAAAAGGTCAAAATACAA+AGG | - | chr3.2:60225905-60225924 | None:intergenic | 25.0% |
| ! | TATGAAATTCTTTGTGTAGA+TGG | + | chr3.2:60228439-60228458 | MS.gene061565:intron | 25.0% |
| ! | TTAAATGCGACAAATATCAT+GGG | + | chr3.2:60227448-60227467 | MS.gene061565:intron | 25.0% |
| ! | TTGAAAAGAATAAGGAAACT+GGG | + | chr3.2:60228324-60228343 | MS.gene061565:CDS | 25.0% |
| ! | TTTAAATGCGACAAATATCA+TGG | + | chr3.2:60227447-60227466 | MS.gene061565:intron | 25.0% |
| ! | TTTATACTTGAATAACACTC+CGG | + | chr3.2:60226863-60226882 | MS.gene061565:intron | 25.0% |
| !! | AGTGTTATTCAAGTATAAAC+TGG | - | chr3.2:60226862-60226881 | None:intergenic | 25.0% |
| !! | TAAGTAAAAGGTATGATGTA+GGG | - | chr3.2:60224738-60224757 | None:intergenic | 25.0% |
| !! | TTTCCTTATTCTTTTCAACA+AGG | - | chr3.2:60228322-60228341 | None:intergenic | 25.0% |
| !!! | AACCATTTTTTGACAACTTT+TGG | - | chr3.2:60225135-60225154 | None:intergenic | 25.0% |
| !!! | GTAGTTTTATCAACATTCTT+TGG | + | chr3.2:60225393-60225412 | MS.gene061565:intron | 25.0% |
| !!! | TTGGGGGAATATTTTTTAAT+TGG | - | chr3.2:60227781-60227800 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTCTATGGTGTC+CGG | - | chr3.2:60227706-60227725 | None:intergenic | 25.0% |
| AAATGTTTGAATTTGAGGGA+AGG | - | chr3.2:60226724-60226743 | None:intergenic | 30.0% | |
| AAGTGAAGGATACTATGTAA+TGG | + | chr3.2:60228187-60228206 | MS.gene061565:CDS | 30.0% | |
| AATGTTAGTGGTCACAAATA+TGG | + | chr3.2:60228564-60228583 | MS.gene061565:CDS | 30.0% | |
| AATTCAGATTTCTTGATTGC+GGG | + | chr3.2:60228925-60228944 | MS.gene061565:intron | 30.0% | |
| AGTCATTGTCTAATGTAGTT+CGG | + | chr3.2:60227110-60227129 | MS.gene061565:intron | 30.0% | |
| ATATATATGTACCTGGACAT+TGG | - | chr3.2:60228037-60228056 | None:intergenic | 30.0% | |
| ATCTTTCACATCAACTATCT+AGG | + | chr3.2:60228651-60228670 | MS.gene061565:CDS | 30.0% | |
| CAACATGATAGTACTAAAAG+AGG | + | chr3.2:60229240-60229259 | MS.gene061565:CDS | 30.0% | |
| CAATTCAGATTTCTTGATTG+CGG | + | chr3.2:60228924-60228943 | MS.gene061565:intron | 30.0% | |
| CAGAACAAAAGAAAACTAGA+GGG | + | chr3.2:60227976-60227995 | MS.gene061565:CDS | 30.0% | |
| CATGAAGTTGTGAAAGATAA+TGG | + | chr3.2:60229580-60229599 | MS.gene061565:CDS | 30.0% | |
| CTACATTAGACAATGACTTA+CGG | - | chr3.2:60227108-60227127 | None:intergenic | 30.0% | |
| CTAGCTAATGAAAAGCAATA+AGG | - | chr3.2:60225184-60225203 | None:intergenic | 30.0% | |
| CTGATCTTGATTCAATAGTT+CGG | - | chr3.2:60228828-60228847 | None:intergenic | 30.0% | |
| GAAAAGAAAATGGTGTAATC+AGG | - | chr3.2:60227051-60227070 | None:intergenic | 30.0% | |
| GAAATTCATCAAAGTTTGTG+TGG | - | chr3.2:60229342-60229361 | None:intergenic | 30.0% | |
| GTCCAAAAGTTGTCAAAAAA+TGG | + | chr3.2:60225130-60225149 | MS.gene061565:intron | 30.0% | |
| GTTGAAAAGAATAAGGAAAC+TGG | + | chr3.2:60228323-60228342 | MS.gene061565:CDS | 30.0% | |
| TAACACATAATTGGAACACT+TGG | + | chr3.2:60228713-60228732 | MS.gene061565:intron | 30.0% | |
| TACATGCATATATGCAGAAT+CGG | + | chr3.2:60227827-60227846 | MS.gene061565:intron | 30.0% | |
| TACATTAGACAATGACTTAC+GGG | - | chr3.2:60227107-60227126 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr3.2:60225012-60225031 | None:intergenic | 30.0% | |
| TCTCCTTGTTGAAAAGAATA+AGG | + | chr3.2:60228316-60228335 | MS.gene061565:CDS | 30.0% | |
| TGGAGGATTTGAAAAGAAAA+TGG | - | chr3.2:60227061-60227080 | None:intergenic | 30.0% | |
| TTCACAAAATTATGCAATGC+AGG | + | chr3.2:60229033-60229052 | MS.gene061565:intron | 30.0% | |
| TTCCAATTATGTGTTACCTT+TGG | - | chr3.2:60228709-60228728 | None:intergenic | 30.0% | |
| ! | GTAAGTAAAAGGTATGATGT+AGG | - | chr3.2:60224739-60224758 | None:intergenic | 30.0% |
| ! | GTTTTCGAACTAATTGAAAG+AGG | + | chr3.2:60228077-60228096 | MS.gene061565:intron | 30.0% |
| !! | ATAATTAACGCCTCTAAGAT+TGG | - | chr3.2:60226784-60226803 | None:intergenic | 30.0% |
| !! | ATTTGCACTTTTTGCGTATT+TGG | + | chr3.2:60228762-60228781 | MS.gene061565:intron | 30.0% |
| !! | TCGAGTTCTGGATAAATAAA+TGG | - | chr3.2:60228510-60228529 | None:intergenic | 30.0% |
| !!! | ATCTCCTGACTTATTTTTTG+TGG | - | chr3.2:60225797-60225816 | None:intergenic | 30.0% |
| !!! | CAAGTTACATTTTAGAGTTG+AGG | + | chr3.2:60228408-60228427 | MS.gene061565:intron | 30.0% |
| AAAAAAGATGAGGACAGATC+AGG | + | chr3.2:60227721-60227740 | MS.gene061565:intron | 35.0% | |
| AAAAGAGGGACTCGAAAAAA+TGG | + | chr3.2:60229255-60229274 | MS.gene061565:CDS | 35.0% | |
| AAAGAGGGACTCGAAAAAAT+GGG | + | chr3.2:60229256-60229275 | MS.gene061565:CDS | 35.0% | |
| AAAGAGGTTAAGCTAAGTGA+AGG | + | chr3.2:60228173-60228192 | MS.gene061565:CDS | 35.0% | |
| AACGATGAATTGATGCTTGA+TGG | + | chr3.2:60224573-60224592 | MS.gene061565:CDS | 35.0% | |
| ACAATGTTGGGTTTGTCATA+AGG | - | chr3.2:60228006-60228025 | None:intergenic | 35.0% | |
| ACATAATATATGCAAGGTCC+AGG | + | chr3.2:60225755-60225774 | MS.gene061565:intron | 35.0% | |
| ACATTGATACTCTTCACCAA+TGG | - | chr3.2:60228549-60228568 | None:intergenic | 35.0% | |
| ACCACCACAAAAAATAAGTC+AGG | + | chr3.2:60225790-60225809 | MS.gene061565:intron | 35.0% | |
| ACTAATACGTCTTGGTTATG+AGG | + | chr3.2:60229086-60229105 | MS.gene061565:CDS | 35.0% | |
| AGAGAGAAAAAAGAAGAGAG+AGG | + | chr3.2:60225073-60225092 | MS.gene061565:intron | 35.0% | |
| AGAGAGAAATTACTGCGATT+TGG | + | chr3.2:60229641-60229660 | MS.gene061565:CDS | 35.0% | |
| ATGAGAAGTTCATCTTGTGA+AGG | + | chr3.2:60228109-60228128 | MS.gene061565:intron | 35.0% | |
| ATGATGAGTTTATCACACTC+AGG | - | chr3.2:60224645-60224664 | None:intergenic | 35.0% | |
| ATGTGAAAGATGAGTTCTTC+AGG | - | chr3.2:60228642-60228661 | None:intergenic | 35.0% | |
| ATTAAGGCAATGTCAAAGAG+AGG | - | chr3.2:60224950-60224969 | None:intergenic | 35.0% | |
| ATTCAGATTTCTTGATTGCG+GGG | + | chr3.2:60228926-60228945 | MS.gene061565:intron | 35.0% | |
| CACAAGATGAACTTCTCATA+AGG | - | chr3.2:60228108-60228127 | None:intergenic | 35.0% | |
| CATAACCAAGACGTATTAGT+TGG | - | chr3.2:60229086-60229105 | None:intergenic | 35.0% | |
| CATAATATATGCAAGGTCCA+GGG | + | chr3.2:60225756-60225775 | MS.gene061565:intron | 35.0% | |
| CTCCAAAGGTAACACATAAT+TGG | + | chr3.2:60228704-60228723 | MS.gene061565:intron | 35.0% | |
| CTTTCTCTATATCAGCTACA+AGG | - | chr3.2:60229492-60229511 | None:intergenic | 35.0% | |
| GACAAATATCATGGGATTGA+GGG | + | chr3.2:60227456-60227475 | MS.gene061565:intron | 35.0% | |
| GATTTGGAAGAAGTTTGTGA+TGG | + | chr3.2:60229657-60229676 | MS.gene061565:CDS | 35.0% | |
| GCAGAACAAAAGAAAACTAG+AGG | + | chr3.2:60227975-60227994 | MS.gene061565:CDS | 35.0% | |
| GGTTGATTATACGTTGTCTA+GGG | - | chr3.2:60226278-60226297 | None:intergenic | 35.0% | |
| GTAATCAACCACAATATCAC+CGG | - | chr3.2:60226885-60226904 | None:intergenic | 35.0% | |
| GTCAACGTAGTTCTTGTTAA+TGG | - | chr3.2:60224673-60224692 | None:intergenic | 35.0% | |
| GTCATTGTCTAATGTAGTTC+GGG | + | chr3.2:60227111-60227130 | MS.gene061565:intron | 35.0% | |
| TAACAAGAACTACGTTGACA+TGG | + | chr3.2:60224674-60224693 | MS.gene061565:CDS | 35.0% | |
| TAAGATGAATGGTGTTTGCT+AGG | + | chr3.2:60229699-60229718 | MS.gene061565:CDS | 35.0% | |
| TAAGGAAAGAAGAAGATACC+AGG | - | chr3.2:60224915-60224934 | None:intergenic | 35.0% | |
| TACTACCAACTAATACGTCT+TGG | + | chr3.2:60229078-60229097 | MS.gene061565:CDS | 35.0% | |
| TATTTATCCAGAACTCGAGT+GGG | + | chr3.2:60228512-60228531 | MS.gene061565:CDS | 35.0% | |
| TCAACATAAGGTTGTTACCT+AGG | - | chr3.2:60224274-60224293 | None:intergenic | 35.0% | |
| TGAGTGTGATAAACTCATCA+TGG | + | chr3.2:60224644-60224663 | MS.gene061565:CDS | 35.0% | |
| TGCACCACTTAAAGAAAATG+AGG | + | chr3.2:60227879-60227898 | MS.gene061565:CDS | 35.0% | |
| TGGTTGATTATACGTTGTCT+AGG | - | chr3.2:60226279-60226298 | None:intergenic | 35.0% | |
| TTATTTATCCAGAACTCGAG+TGG | + | chr3.2:60228511-60228530 | MS.gene061565:CDS | 35.0% | |
| ! | AAGCAACTACTAGTGTTGTT+GGG | - | chr3.2:60227799-60227818 | None:intergenic | 35.0% |
| ! | ATTTGCAAGGTACTTTGAAG+TGG | + | chr3.2:60228145-60228164 | MS.gene061565:CDS | 35.0% |
| ! | CAATTTTAGGCACATCTTGT+GGG | + | chr3.2:60225930-60225949 | MS.gene061565:intron | 35.0% |
| ! | GAAAGATAATGGTCAAGTAG+TGG | + | chr3.2:60229591-60229610 | MS.gene061565:CDS | 35.0% |
| ! | TAAAAGGTATGATGTAGGGA+GGG | - | chr3.2:60224734-60224753 | None:intergenic | 35.0% |
| ! | TCAATTTTAGGCACATCTTG+TGG | + | chr3.2:60225929-60225948 | MS.gene061565:intron | 35.0% |
| !! | AAATATGGTCTTGTCTATGC+TGG | + | chr3.2:60228579-60228598 | MS.gene061565:CDS | 35.0% |
| !! | AAGATGATGACAGTCTTGTT+AGG | + | chr3.2:60227185-60227204 | MS.gene061565:intron | 35.0% |
| !! | CTTTGAAGTGGAATTGAAAG+AGG | + | chr3.2:60228157-60228176 | MS.gene061565:CDS | 35.0% |
| !! | CTTTGCATTAACTTGTTGCA+GGG | + | chr3.2:60229187-60229206 | MS.gene061565:intron | 35.0% |
| !! | GTGAAGAGTATCAATGTTAG+TGG | + | chr3.2:60228552-60228571 | MS.gene061565:CDS | 35.0% |
| !! | TCTTTGCATTAACTTGTTGC+AGG | + | chr3.2:60229186-60229205 | MS.gene061565:intron | 35.0% |
| !! | TTTGCATTAACTTGTTGCAG+GGG | + | chr3.2:60229188-60229207 | MS.gene061565:intron | 35.0% |
| !!! | ACTTATTTTTTGTGGTGGTC+GGG | - | chr3.2:60225789-60225808 | None:intergenic | 35.0% |
| !!! | GACTTATTTTTTGTGGTGGT+CGG | - | chr3.2:60225790-60225809 | None:intergenic | 35.0% |
| !!! | TCCTGACTTATTTTTTGTGG+TGG | - | chr3.2:60225794-60225813 | None:intergenic | 35.0% |
| !!! | TTTAAGTTTTTGATGGTGGC+CGG | - | chr3.2:60225588-60225607 | None:intergenic | 35.0% |
| AAAGAAAATGAGGCTGCAGT+TGG | + | chr3.2:60227889-60227908 | MS.gene061565:CDS | 40.0% | |
| AACAAGACTGTCATGAATGG+AGG | - | chr3.2:60227078-60227097 | None:intergenic | 40.0% | |
| AACATTGTGTCGAAAGACGA+CGG | + | chr3.2:60229286-60229305 | MS.gene061565:CDS | 40.0% | |
| AAGAGGGACTCGAAAAAATG+GGG | + | chr3.2:60229257-60229276 | MS.gene061565:CDS | 40.0% | |
| AAGGATAGCAGCAACACAAA+TGG | - | chr3.2:60228249-60228268 | None:intergenic | 40.0% | |
| AAGGATGCCAAGTTCAATCT+AGG | - | chr3.2:60224603-60224622 | None:intergenic | 40.0% | |
| AGGAATTGGGGAGTAGTTAA+CGG | - | chr3.2:60225216-60225235 | None:intergenic | 40.0% | |
| AGGATGCCAAGTTCAATCTA+GGG | - | chr3.2:60224602-60224621 | None:intergenic | 40.0% | |
| ATAAACACAAGTTGCGCGTT+AGG | + | chr3.2:60224856-60224875 | MS.gene061565:intron | 40.0% | |
| ATAACACTCCGGTGATATTG+TGG | + | chr3.2:60226874-60226893 | MS.gene061565:intron | 40.0% | |
| ATCCTTTGTCACAACTTGGA+TGG | + | chr3.2:60224617-60224636 | MS.gene061565:CDS | 40.0% | |
| ATGTCAGAACTTCACTTCCT+AGG | + | chr3.2:60224254-60224273 | MS.gene061565:CDS | 40.0% | |
| ATTTGGTATGCTGCATCCTT+TGG | - | chr3.2:60224549-60224568 | None:intergenic | 40.0% | |
| CATTTGGATGACATTGTGGT+TGG | - | chr3.2:60227025-60227044 | None:intergenic | 40.0% | |
| CCTAACAAGACTGTCATGAA+TGG | - | chr3.2:60227081-60227100 | None:intergenic | 40.0% | |
| CCTAATGACAACGCGTAAAA+CGG | - | chr3.2:60229440-60229459 | None:intergenic | 40.0% | |
| CGACAAATATCATGGGATTG+AGG | + | chr3.2:60227455-60227474 | MS.gene061565:intron | 40.0% | |
| GAAGCAACTACTAGTGTTGT+TGG | - | chr3.2:60227800-60227819 | None:intergenic | 40.0% | |
| GATTGGCATTCAAAAGGAAG+TGG | + | chr3.2:60227953-60227972 | MS.gene061565:CDS | 40.0% | |
| GCGAGGATAAAGATGATAAG+TGG | + | chr3.2:60229538-60229557 | MS.gene061565:CDS | 40.0% | |
| GGCTATAATGTTAGCTGGAT+TGG | + | chr3.2:60227936-60227955 | MS.gene061565:CDS | 40.0% | |
| GTTGTGAATGCCAATCTTAG+AGG | + | chr3.2:60226771-60226790 | MS.gene061565:intron | 40.0% | |
| TACTCTTCACCAATGGTAAG+CGG | - | chr3.2:60228542-60228561 | None:intergenic | 40.0% | |
| TATGTATAGCTAAGCTCACG+AGG | - | chr3.2:60225740-60225759 | None:intergenic | 40.0% | |
| TCAGAGGCTATAATGTTAGC+TGG | + | chr3.2:60227931-60227950 | MS.gene061565:CDS | 40.0% | |
| TCATTAGGGAGGATTTCTCA+AGG | + | chr3.2:60229452-60229471 | MS.gene061565:CDS | 40.0% | |
| TGATCATCAGACGAAGACAA+AGG | - | chr3.2:60224406-60224425 | None:intergenic | 40.0% | |
| TGGAAACCCTAGATTGAACT+TGG | + | chr3.2:60224593-60224612 | MS.gene061565:CDS | 40.0% | |
| TGTCTATGCTGGAATTGGTT+GGG | + | chr3.2:60228590-60228609 | MS.gene061565:CDS | 40.0% | |
| TTCAATGTGAAGGCCACTAA+AGG | - | chr3.2:60229316-60229335 | None:intergenic | 40.0% | |
| TTCATCTTGTGAAGGTTTGC+TGG | + | chr3.2:60228117-60228136 | MS.gene061565:intron | 40.0% | |
| TTGTCTATGCTGGAATTGGT+TGG | + | chr3.2:60228589-60228608 | MS.gene061565:CDS | 40.0% | |
| TTTACCCTCAACTTCTCCAA+AGG | + | chr3.2:60228690-60228709 | MS.gene061565:CDS | 40.0% | |
| TTTAGTGGCCTTCACATTGA+AGG | + | chr3.2:60229315-60229334 | MS.gene061565:CDS | 40.0% | |
| TTTGCTGGGAGAAATTTGCA+AGG | + | chr3.2:60228132-60228151 | MS.gene061565:CDS | 40.0% | |
| TTTGGAGAAGTTGAGGGTAA+AGG | - | chr3.2:60228691-60228710 | None:intergenic | 40.0% | |
| ! | AAGTGAAGTTCTGACATAGC+GGG | - | chr3.2:60224251-60224270 | None:intergenic | 40.0% |
| ! | AGCAACTACTAGTGTTGTTG+GGG | - | chr3.2:60227798-60227817 | None:intergenic | 40.0% |
| ! | ATTTGTGTTGCTGCTATCCT+TGG | + | chr3.2:60228248-60228267 | MS.gene061565:CDS | 40.0% |
| ! | CGTTTTACGCGTTGTCATTA+GGG | + | chr3.2:60229438-60229457 | MS.gene061565:CDS | 40.0% |
| ! | GAAGTGAAGTTCTGACATAG+CGG | - | chr3.2:60224252-60224271 | None:intergenic | 40.0% |
| ! | GCAGCCTCATTTTCTTTAAG+TGG | - | chr3.2:60227886-60227905 | None:intergenic | 40.0% |
| ! | GCAGGGGTATAAAAATGTGA+TGG | + | chr3.2:60229204-60229223 | MS.gene061565:intron | 40.0% |
| ! | GGTAGTATTGAGCAATGACT+TGG | - | chr3.2:60229065-60229084 | None:intergenic | 40.0% |
| ! | GTAAAAGGTATGATGTAGGG+AGG | - | chr3.2:60224735-60224754 | None:intergenic | 40.0% |
| ! | GTTACCTTTGGAGAAGTTGA+GGG | - | chr3.2:60228697-60228716 | None:intergenic | 40.0% |
| ! | TCATCTTGTGAAGGTTTGCT+GGG | + | chr3.2:60228118-60228137 | MS.gene061565:intron | 40.0% |
| ! | TGTTACCTTTGGAGAAGTTG+AGG | - | chr3.2:60228698-60228717 | None:intergenic | 40.0% |
| !! | CCATTCATGACAGTCTTGTT+AGG | + | chr3.2:60227078-60227097 | MS.gene061565:intron | 40.0% |
| !! | GGAAGAAGTTTGTGATGGAT+AGG | + | chr3.2:60229662-60229681 | MS.gene061565:CDS | 40.0% |
| !! | GGTTGCTAAAAAGAGTGCTT+TGG | + | chr3.2:60229612-60229631 | MS.gene061565:CDS | 40.0% |
| !! | GTTGATGATCACATGAAGTG+AGG | - | chr3.2:60224382-60224401 | None:intergenic | 40.0% |
| !! | TAGCTGGATTGGCATTCAAA+AGG | + | chr3.2:60227947-60227966 | MS.gene061565:CDS | 40.0% |
| !! | TTCAAATCTCCGACTTGTTG+AGG | + | chr3.2:60229359-60229378 | MS.gene061565:CDS | 40.0% |
| !!! | CTTATTTTTTGTGGTGGTCG+GGG | - | chr3.2:60225788-60225807 | None:intergenic | 40.0% |
| !!! | TTAAGTTTTTGATGGTGGCC+GGG | - | chr3.2:60225587-60225606 | None:intergenic | 40.0% |
| AATTGGGGAGTAGTTAACGG+AGG | - | chr3.2:60225213-60225232 | None:intergenic | 45.0% | |
| ACGGTTATGTGTTGAGCATC+CGG | - | chr3.2:60229421-60229440 | None:intergenic | 45.0% | |
| AGCTTGATTCACTTACTGCG+AGG | + | chr3.2:60229521-60229540 | MS.gene061565:CDS | 45.0% | |
| ATCCTTGGTTCCACACTCAA+TGG | + | chr3.2:60228263-60228282 | MS.gene061565:CDS | 45.0% | |
| ATGGGACACTCCTATTCATG+TGG | + | chr3.2:60228458-60228477 | MS.gene061565:CDS | 45.0% | |
| ATTGGGGAGTAGTTAACGGA+GGG | - | chr3.2:60225212-60225231 | None:intergenic | 45.0% | |
| CTCCATCCAAGTTGTGACAA+AGG | - | chr3.2:60224622-60224641 | None:intergenic | 45.0% | |
| CTGGAATTGGTTGGGCTATT+TGG | + | chr3.2:60228598-60228617 | MS.gene061565:CDS | 45.0% | |
| GACAAACCCAACATTGTCAC+TGG | + | chr3.2:60228009-60228028 | MS.gene061565:CDS | 45.0% | |
| GACATTGTGGTTGGCGATAT+TGG | - | chr3.2:60227016-60227035 | None:intergenic | 45.0% | |
| GAGAAGTTGAGGGTAAAGGT+AGG | - | chr3.2:60228687-60228706 | None:intergenic | 45.0% | |
| GCAGCATTTGGATGACATTG+TGG | - | chr3.2:60227029-60227048 | None:intergenic | 45.0% | |
| TCCTTTGGTATAGACTCGTC+TGG | - | chr3.2:60224534-60224553 | None:intergenic | 45.0% | |
| TGGCATCCTTTGTCACAACT+TGG | + | chr3.2:60224613-60224632 | MS.gene061565:CDS | 45.0% | |
| TGGTGTAATCAGGCAGCATT+TGG | - | chr3.2:60227041-60227060 | None:intergenic | 45.0% | |
| TGTGTGGTCCTTCAATGTGA+AGG | - | chr3.2:60229326-60229345 | None:intergenic | 45.0% | |
| TTAGCTTAGGGTTCGAACTC+CGG | + | chr3.2:60227684-60227703 | MS.gene061565:intron | 45.0% | |
| TTCGAACTCTCCATTGAGTG+TGG | - | chr3.2:60228276-60228295 | None:intergenic | 45.0% | |
| TTGGGCTATTTGGAGAAGCA+AGG | + | chr3.2:60228608-60228627 | MS.gene061565:CDS | 45.0% | |
| TTTACGCGTTGTCATTAGGG+AGG | + | chr3.2:60229441-60229460 | MS.gene061565:CDS | 45.0% | |
| ! | CCGTTTTACGCGTTGTCATT+AGG | + | chr3.2:60229437-60229456 | MS.gene061565:CDS | 45.0% |
| ! | GCAACTACTAGTGTTGTTGG+GGG | - | chr3.2:60227797-60227816 | None:intergenic | 45.0% |
| ! | GGTCTTGTCTATGCTGGAAT+TGG | + | chr3.2:60228585-60228604 | MS.gene061565:CDS | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | + | chr3.2:60225522-60225541 | MS.gene061565:intron | 45.0% |
| ! | TTTTGCGTATTTGGATCCCC+TGG | + | chr3.2:60228771-60228790 | MS.gene061565:intron | 45.0% |
| !! | CTATGTAATGGACCCTGCAA+AGG | + | chr3.2:60228199-60228218 | MS.gene061565:CDS | 45.0% |
| !!! | TAAGTTTTTGATGGTGGCCG+GGG | - | chr3.2:60225586-60225605 | None:intergenic | 45.0% |
| !! | ACAAAATAAAAAATATTTAT+CGG | + | chr3.2:60227323-60227342 | MS.gene061565:intron | 5.0% |
| !!! | AATTTTATTTTAGAATTAAT+TGG | - | chr3.2:60225665-60225684 | None:intergenic | 5.0% |
| AACCCTAAGCTAAGCTCACG+GGG | - | chr3.2:60227677-60227696 | None:intergenic | 50.0% | |
| ACCAATTCCACAGCCTTTGC+AGG | - | chr3.2:60228215-60228234 | None:intergenic | 50.0% | |
| AGACGACGGTGTACCTTTAG+TGG | + | chr3.2:60229300-60229319 | MS.gene061565:CDS | 50.0% | |
| ATTGGCGCCAGTGACAATGT+TGG | - | chr3.2:60228019-60228038 | None:intergenic | 50.0% | |
| CCAATTCCACAGCCTTTGCA+GGG | - | chr3.2:60228214-60228233 | None:intergenic | 50.0% | |
| CGAACCCTAAGCTAAGCTCA+CGG | - | chr3.2:60227679-60227698 | None:intergenic | 50.0% | |
| CGGTTATGTGTTGAGCATCC+GGG | - | chr3.2:60229420-60229439 | None:intergenic | 50.0% | |
| CTCCATTGAGTGTGGAACCA+AGG | - | chr3.2:60228268-60228287 | None:intergenic | 50.0% | |
| GAACCCTAAGCTAAGCTCAC+GGG | - | chr3.2:60227678-60227697 | None:intergenic | 50.0% | |
| GCCAGACGAGTCTATACCAA+AGG | + | chr3.2:60224530-60224549 | MS.gene061565:CDS | 50.0% | |
| GGAAGCAAAGGTTGAGTGGA+CGG | - | chr3.2:60224230-60224249 | None:intergenic | 50.0% | |
| GGTTATGTGTTGAGCATCCG+GGG | - | chr3.2:60229419-60229438 | None:intergenic | 50.0% | |
| GTGGACGGAAACATCAGACT+CGG | - | chr3.2:60224215-60224234 | None:intergenic | 50.0% | |
| GTGGGATTTCCGCTTACCAT+TGG | + | chr3.2:60228530-60228549 | MS.gene061565:CDS | 50.0% | |
| GTTATGTGTTGAGCATCCGG+GGG | - | chr3.2:60229418-60229437 | None:intergenic | 50.0% | |
| TAGTTCGGCACACACGACTA+TGG | - | chr3.2:60228813-60228832 | None:intergenic | 50.0% | |
| TTGGCGCCAGTGACAATGTT+GGG | - | chr3.2:60228018-60228037 | None:intergenic | 50.0% | |
| ! | AAGGTCTAGGGTTCAAACCC+CGG | + | chr3.2:60225566-60225585 | MS.gene061565:intron | 50.0% |
| ! | AATGAGGCTGCAGTTGGTGT+TGG | + | chr3.2:60227895-60227914 | MS.gene061565:CDS | 50.0% |
| ! | CACATGCTTGCTAGATCCAG+GGG | - | chr3.2:60228790-60228809 | None:intergenic | 50.0% |
| ! | GCACATGCTTGCTAGATCCA+GGG | - | chr3.2:60228791-60228810 | None:intergenic | 50.0% |
| ! | TCTGACATAGCGGGAAGCAA+AGG | - | chr3.2:60224242-60224261 | None:intergenic | 50.0% |
| AATGGACCCTGCAAAGGCTG+TGG | + | chr3.2:60228205-60228224 | MS.gene061565:CDS | 55.0% | |
| ACCTGTAGCTCAGTGGTGAC+AGG | - | chr3.2:60224708-60224727 | None:intergenic | 55.0% | |
| AGCGGGAAGCAAAGGTTGAG+TGG | - | chr3.2:60224234-60224253 | None:intergenic | 55.0% | |
| AGGGTCTACCTGTAGCTCAG+TGG | - | chr3.2:60224715-60224734 | None:intergenic | 55.0% | |
| AGTCCCCGTGAGCTTAGCTT+AGG | + | chr3.2:60227671-60227690 | MS.gene061565:intron | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr3.2:60225520-60225539 | None:intergenic | 55.0% | |
| CCCTGCAAAGGCTGTGGAAT+TGG | + | chr3.2:60228211-60228230 | MS.gene061565:CDS | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr3.2:60225517-60225536 | MS.gene061565:intron | 55.0% | |
| CCTGTAGCTCAGTGGTGACA+GGG | - | chr3.2:60224707-60224726 | None:intergenic | 55.0% | |
| CGGAAATCCCACTCGAGTTC+TGG | - | chr3.2:60228522-60228541 | None:intergenic | 55.0% | |
| GACGGAAACATCAGACTCGG+AGG | - | chr3.2:60224212-60224231 | None:intergenic | 55.0% | |
| GTCCCCGTGAGCTTAGCTTA+GGG | + | chr3.2:60227672-60227691 | MS.gene061565:intron | 55.0% | |
| ! | ACTTGTTGAGGCGCTTCGGA+TGG | + | chr3.2:60229371-60229390 | MS.gene061565:CDS | 55.0% |
| ! | GGCACATGCTTGCTAGATCC+AGG | - | chr3.2:60228792-60228811 | None:intergenic | 55.0% |
| ! | TCCGAAGCGCCTCAACAAGT+CGG | - | chr3.2:60229371-60229390 | None:intergenic | 55.0% |
| !! | GCAGTTGGTGTTGGCACTGT+TGG | + | chr3.2:60227904-60227923 | MS.gene061565:CDS | 55.0% |
| !! | TCCGACTTGTTGAGGCGCTT+CGG | + | chr3.2:60229367-60229386 | MS.gene061565:CDS | 55.0% |
| !! | TGGCACTGTTGGCTCATCAG+AGG | + | chr3.2:60227915-60227934 | MS.gene061565:CDS | 55.0% |
| CCCTGTCACCACTGAGCTAC+AGG | + | chr3.2:60224704-60224723 | MS.gene061565:CDS | 60.0% | |
| TCCAGCATACAGCATGCCCC+CGG | + | chr3.2:60229399-60229418 | MS.gene061565:CDS | 60.0% | |
| TGTCACTGGCGCCAATGTCC+AGG | + | chr3.2:60228023-60228042 | MS.gene061565:CDS | 60.0% | |
| GGTGGTCGGGGTTTGAACCC+TGG | - | chr3.2:60225776-60225795 | None:intergenic | 65.0% | |
| ! | TCCGGGGGCATGCTGTATGC+TGG | - | chr3.2:60229403-60229422 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 60224190 | 60229720 | 60224190 | ID=MS.gene061565 |
| chr3.2 | mRNA | 60224190 | 60229720 | 60224190 | ID=MS.gene061565.t1;Parent=MS.gene061565 |
| chr3.2 | exon | 60224190 | 60224275 | 60224190 | ID=MS.gene061565.t1.exon1;Parent=MS.gene061565.t1 |
| chr3.2 | CDS | 60224190 | 60224275 | 60224190 | ID=cds.MS.gene061565.t1;Parent=MS.gene061565.t1 |
| chr3.2 | exon | 60224521 | 60224725 | 60224521 | ID=MS.gene061565.t1.exon2;Parent=MS.gene061565.t1 |
| chr3.2 | CDS | 60224521 | 60224725 | 60224521 | ID=cds.MS.gene061565.t1;Parent=MS.gene061565.t1 |
| chr3.2 | exon | 60227844 | 60228044 | 60227844 | ID=MS.gene061565.t1.exon3;Parent=MS.gene061565.t1 |
| chr3.2 | CDS | 60227844 | 60228044 | 60227844 | ID=cds.MS.gene061565.t1;Parent=MS.gene061565.t1 |
| chr3.2 | exon | 60228131 | 60228345 | 60228131 | ID=MS.gene061565.t1.exon4;Parent=MS.gene061565.t1 |
| chr3.2 | CDS | 60228131 | 60228345 | 60228131 | ID=cds.MS.gene061565.t1;Parent=MS.gene061565.t1 |
| chr3.2 | exon | 60228458 | 60228711 | 60228458 | ID=MS.gene061565.t1.exon5;Parent=MS.gene061565.t1 |
| chr3.2 | CDS | 60228458 | 60228711 | 60228458 | ID=cds.MS.gene061565.t1;Parent=MS.gene061565.t1 |
| chr3.2 | exon | 60229055 | 60229107 | 60229055 | ID=MS.gene061565.t1.exon6;Parent=MS.gene061565.t1 |
| chr3.2 | CDS | 60229055 | 60229107 | 60229055 | ID=cds.MS.gene061565.t1;Parent=MS.gene061565.t1 |
| chr3.2 | exon | 60229208 | 60229720 | 60229208 | ID=MS.gene061565.t1.exon7;Parent=MS.gene061565.t1 |
| chr3.2 | CDS | 60229208 | 60229720 | 60229208 | ID=cds.MS.gene061565.t1;Parent=MS.gene061565.t1 |
| Gene Sequence |
| Protein sequence |
