Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049710.t1 | RHN68080.1 | 98.6 | 508 | 7 | 0 | 1 | 508 | 1 | 508 | 6.50E-294 | 1019.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049710.t1 | Q42521 | 84.5 | 510 | 69 | 4 | 1 | 508 | 1 | 502 | 2.2e-250 | 865.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049710.t1 | A0A396IRV4 | 98.6 | 508 | 7 | 0 | 1 | 508 | 1 | 508 | 4.7e-294 | 1019.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049710 | MS.gene05015 | 0.853573 | 2.19E-61 | -1.69E-46 |
| MS.gene049710 | MS.gene051044 | 0.847952 | 8.35E-60 | -1.69E-46 |
| MS.gene049710 | MS.gene053488 | 0.806858 | 6.71E-50 | -1.69E-46 |
| MS.gene049710 | MS.gene055124 | 0.816261 | 6.06E-52 | -1.69E-46 |
| MS.gene049710 | MS.gene055942 | 0.81689 | 4.38E-52 | -1.69E-46 |
| MS.gene049710 | MS.gene056856 | 0.803014 | 4.27E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene057549 | 0.803879 | 2.82E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene058099 | 0.810326 | 1.22E-50 | -1.69E-46 |
| MS.gene049710 | MS.gene059690 | 0.80259 | 5.22E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene059691 | 0.836923 | 7.04E-57 | -1.69E-46 |
| MS.gene049710 | MS.gene059694 | 0.827663 | 1.38E-54 | -1.69E-46 |
| MS.gene049710 | MS.gene059697 | 0.843652 | 1.23E-58 | -1.69E-46 |
| MS.gene049710 | MS.gene061565 | 0.81643 | 5.55E-52 | -1.69E-46 |
| MS.gene049710 | MS.gene062071 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene07004 | 0.80148 | 8.83E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene071810 | 0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene049710 | MS.gene072378 | 0.805369 | 1.38E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene08407 | 0.807406 | 5.13E-50 | -1.69E-46 |
| MS.gene049710 | MS.gene21577 | 0.833622 | 4.80E-56 | -1.69E-46 |
| MS.gene049710 | MS.gene25062 | 0.819739 | 9.91E-53 | -1.69E-46 |
| MS.gene049710 | MS.gene26403 | 0.811618 | 6.40E-51 | -1.69E-46 |
| MS.gene049710 | MS.gene26517 | 0.800963 | 1.13E-48 | -1.69E-46 |
| MS.gene049710 | MS.gene27550 | 0.80398 | 2.69E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene28111 | 0.811422 | 7.06E-51 | -1.69E-46 |
| MS.gene049710 | MS.gene28724 | 0.804368 | 2.23E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene33336 | 0.808241 | 3.41E-50 | -1.69E-46 |
| MS.gene049710 | MS.gene35105 | 0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene049710 | MS.gene35208 | 0.819315 | 1.24E-52 | -1.69E-46 |
| MS.gene049710 | MS.gene38359 | 0.825633 | 4.21E-54 | -1.69E-46 |
| MS.gene049710 | MS.gene38706 | 0.835435 | 1.68E-56 | -1.69E-46 |
| MS.gene049710 | MS.gene39535 | 0.819407 | 1.18E-52 | -1.69E-46 |
| MS.gene049710 | MS.gene40247 | 0.821942 | 3.09E-53 | -1.69E-46 |
| MS.gene049710 | MS.gene46027 | 0.815563 | 8.67E-52 | -1.69E-46 |
| MS.gene049710 | MS.gene46779 | 0.802988 | 4.32E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene47576 | 0.828443 | 8.97E-55 | -1.69E-46 |
| MS.gene049710 | MS.gene47577 | 0.814224 | 1.72E-51 | -1.69E-46 |
| MS.gene049710 | MS.gene51018 | 0.826162 | 3.16E-54 | -1.69E-46 |
| MS.gene049710 | MS.gene51024 | 0.835598 | 1.53E-56 | -1.69E-46 |
| MS.gene049710 | MS.gene51528 | 0.818266 | 2.14E-52 | -1.69E-46 |
| MS.gene049710 | MS.gene52027 | 0.80307 | 4.15E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene55036 | 0.800768 | 1.23E-48 | -1.69E-46 |
| MS.gene049710 | MS.gene59005 | 0.800607 | 1.33E-48 | -1.69E-46 |
| MS.gene049710 | MS.gene63706 | 0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene69071 | 0.815324 | 9.80E-52 | -1.69E-46 |
| MS.gene049710 | MS.gene73788 | 0.80803 | 3.78E-50 | -1.69E-46 |
| MS.gene049710 | MS.gene76453 | 0.807081 | 6.02E-50 | -1.69E-46 |
| MS.gene049710 | MS.gene81725 | 0.801806 | 7.57E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene88886 | 0.805642 | 1.21E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene95132 | 0.816046 | 6.77E-52 | -1.69E-46 |
| MS.gene049710 | MS.gene95929 | 0.806045 | 9.95E-50 | -1.69E-46 |
| MS.gene049710 | MS.gene96299 | 0.803284 | 3.75E-49 | -1.69E-46 |
| MS.gene049710 | MS.gene97601 | 0.800453 | 1.43E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049710.t1 | MTR_3g064740 | 98.228 | 508 | 9 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1036 |
| MS.gene049710.t1 | MTR_5g077090 | 84.168 | 499 | 73 | 3 | 11 | 508 | 2 | 495 | 0.0 | 875 |
| MS.gene049710.t1 | MTR_3g064740 | 97.821 | 413 | 9 | 0 | 96 | 508 | 1 | 413 | 0.0 | 840 |
| MS.gene049710.t1 | MTR_6g075210 | 74.755 | 511 | 114 | 4 | 1 | 508 | 1 | 499 | 0.0 | 785 |
| MS.gene049710.t1 | MTR_6g075210 | 72.751 | 378 | 91 | 2 | 131 | 508 | 1 | 366 | 0.0 | 567 |
| MS.gene049710.t1 | MTR_6g075210 | 70.227 | 309 | 86 | 1 | 190 | 498 | 1 | 303 | 8.27e-158 | 451 |
| MS.gene049710.t1 | MTR_7g022310 | 25.275 | 364 | 240 | 11 | 81 | 433 | 157 | 499 | 2.42e-24 | 106 |
| MS.gene049710.t1 | MTR_5g075840 | 46.914 | 81 | 43 | 0 | 372 | 452 | 48 | 128 | 3.39e-16 | 76.3 |
| MS.gene049710.t1 | MTR_5g075820 | 62.069 | 58 | 19 | 1 | 252 | 309 | 15 | 69 | 3.94e-15 | 73.2 |
| MS.gene049710.t1 | MTR_3g064750 | 79.545 | 44 | 9 | 0 | 464 | 507 | 5 | 48 | 1.25e-14 | 73.2 |
| MS.gene049710.t1 | MTR_3g064750 | 79.545 | 44 | 9 | 0 | 464 | 507 | 5 | 48 | 9.02e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049710.t1 | AT5G17330 | 84.510 | 510 | 69 | 4 | 1 | 508 | 1 | 502 | 0.0 | 885 |
| MS.gene049710.t1 | AT2G02010 | 80.906 | 508 | 82 | 3 | 1 | 508 | 53 | 545 | 0.0 | 858 |
| MS.gene049710.t1 | AT2G02010 | 81.299 | 508 | 80 | 4 | 1 | 508 | 1 | 493 | 0.0 | 858 |
| MS.gene049710.t1 | AT1G65960 | 80.709 | 508 | 84 | 4 | 1 | 508 | 1 | 494 | 0.0 | 845 |
| MS.gene049710.t1 | AT2G02000 | 80.242 | 496 | 82 | 3 | 1 | 494 | 1 | 482 | 0.0 | 836 |
| MS.gene049710.t1 | AT3G17760 | 74.600 | 500 | 119 | 3 | 1 | 500 | 1 | 492 | 0.0 | 784 |
| MS.gene049710.t1 | AT3G17760 | 74.600 | 500 | 119 | 3 | 1 | 500 | 1 | 492 | 0.0 | 784 |
| MS.gene049710.t1 | AT1G65960 | 80.423 | 378 | 61 | 3 | 131 | 508 | 1 | 365 | 0.0 | 628 |
| MS.gene049710.t1 | AT1G65960 | 80.423 | 378 | 61 | 3 | 131 | 508 | 1 | 365 | 0.0 | 628 |
| MS.gene049710.t1 | AT1G65960 | 80.423 | 378 | 61 | 3 | 131 | 508 | 1 | 365 | 0.0 | 628 |
| MS.gene049710.t1 | AT3G17720 | 74.691 | 162 | 38 | 1 | 91 | 252 | 27 | 185 | 1.69e-81 | 252 |
| MS.gene049710.t1 | AT1G27980 | 24.444 | 360 | 244 | 10 | 81 | 431 | 160 | 500 | 4.32e-20 | 94.0 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCATCGTTTATTATT+TGG | 0.136280 | 3.3:-58397911 | None:intergenic |
| CTGGAATTGGTTGGGCTATT+TGG | 0.152853 | 3.3:+58403555 | MS.gene049710:CDS |
| TCAAGTTCTGGATAAATAAA+TGG | 0.279001 | 3.3:-58403464 | None:intergenic |
| GTCGAAAAGAATAAGGAAAC+TGG | 0.302476 | 3.3:+58403291 | MS.gene049710:CDS |
| CGGAAATCCCACTCAAGTTC+TGG | 0.311918 | 3.3:-58403476 | None:intergenic |
| ATTTGGTATGCTGCATCCTT+TGG | 0.329291 | 3.3:-58397894 | None:intergenic |
| CCCTCAAAAGGCTGTGGAAT+TGG | 0.329338 | 3.3:+58403179 | MS.gene049710:CDS |
| GCAGTTGGTGTTGGCACTGT+TGG | 0.345197 | 3.3:+58402872 | MS.gene049710:CDS |
| TCTCCTTGTCGAAAAGAATA+AGG | 0.347165 | 3.3:+58403284 | MS.gene049710:CDS |
| AACGATGAATTGATGCTTGA+TGG | 0.349990 | 3.3:+58397921 | MS.gene049710:CDS |
| AGAGAGAAATTACTGCGATT+TGG | 0.357715 | 3.3:+58404591 | MS.gene049710:CDS |
| TTGGCTCCAGTGACAATGTT+AGG | 0.358745 | 3.3:-58402983 | None:intergenic |
| AAGGATGCCAAGTTCAATCT+AGG | 0.365541 | 3.3:-58397948 | None:intergenic |
| ATGTGAAAGATGAGTTCTTC+AGG | 0.381067 | 3.3:-58403596 | None:intergenic |
| ATTTGTGTTGCTGCTATCCT+TGG | 0.389399 | 3.3:+58403216 | MS.gene049710:CDS |
| GGTCTTGTCTATGCTGGAAT+TGG | 0.394287 | 3.3:+58403542 | MS.gene049710:CDS |
| TCAGACTTGTTGAGGCGCTT+TGG | 0.396454 | 3.3:+58404317 | MS.gene049710:CDS |
| GGCTATAATGTTAGCTGGAT+TGG | 0.399926 | 3.3:+58402904 | MS.gene049710:CDS |
| AATGTTAGTGGTCACAAATA+TGG | 0.413799 | 3.3:+58403521 | MS.gene049710:CDS |
| CCCTGTCACCACTGAGCTAC+AGG | 0.413885 | 3.3:+58398052 | MS.gene049710:CDS |
| CTAGCTGCATCCACATGAAT+AGG | 0.423113 | 3.3:-58403425 | None:intergenic |
| CCTAATGACAACGCGTAAAA+CGG | 0.423881 | 3.3:-58404387 | None:intergenic |
| TTGTCTATGCTGGAATTGGT+TGG | 0.426198 | 3.3:+58403546 | MS.gene049710:CDS |
| ACGGTTATATGTTGAGCATC+CGG | 0.427756 | 3.3:-58404368 | None:intergenic |
| TTCATCTTGTGAAGGTTTGT+TGG | 0.428544 | 3.3:+58403085 | MS.gene049710:intron |
| ACCTGTAGCTCAGTGGTGAC+AGG | 0.432542 | 3.3:-58398053 | None:intergenic |
| TGTCTATGCTGGAATTGGTT+GGG | 0.432578 | 3.3:+58403547 | MS.gene049710:CDS |
| TGGCATCCTTTGTGACAACT+TGG | 0.434405 | 3.3:+58397961 | MS.gene049710:CDS |
| CGGTTATATGTTGAGCATCC+GGG | 0.436122 | 3.3:-58404367 | None:intergenic |
| TCATCTTGTGAAGGTTTGTT+GGG | 0.440857 | 3.3:+58403086 | MS.gene049710:intron |
| ACTAATACGCCTTGGTTATG+AGG | 0.444736 | 3.3:+58404012 | MS.gene049710:CDS |
| ACAATGTTAGGTTTGTCATA+AGG | 0.444973 | 3.3:-58402971 | None:intergenic |
| TTTGGTGGCCTTCACATTGA+AGG | 0.458482 | 3.3:+58404265 | MS.gene049710:CDS |
| ATCCTTGGTTCCACACTCAA+TGG | 0.468510 | 3.3:+58403231 | MS.gene049710:CDS |
| CTTTGAAGTGGAATTGAAAG+AGG | 0.469636 | 3.3:+58403125 | MS.gene049710:CDS |
| GAAAGACGACGGCGTACCTT+TGG | 0.471850 | 3.3:+58404247 | MS.gene049710:CDS |
| AAATATGGTCTTGTCTATGC+TGG | 0.473013 | 3.3:+58403536 | MS.gene049710:CDS |
| CTATGTAATGGACCCTCAAA+AGG | 0.479714 | 3.3:+58403167 | MS.gene049710:CDS |
| ACTTGTTGAGGCGCTTTGGA+TGG | 0.488554 | 3.3:+58404321 | MS.gene049710:CDS |
| TAGCTGGATTGGCATTCAAA+AGG | 0.488770 | 3.3:+58402915 | MS.gene049710:CDS |
| GGAAGAAGTTTGTGATGGAT+AGG | 0.490629 | 3.3:+58404612 | MS.gene049710:CDS |
| ATCTTTCACATCAACTATCT+AGG | 0.491229 | 3.3:+58403608 | MS.gene049710:CDS |
| GAGAAGTTGAGAGTAAAGGT+AGG | 0.491421 | 3.3:-58403641 | None:intergenic |
| ATGTCAGAACTTCACTTCCT+AGG | 0.491432 | 3.3:+58397520 | MS.gene049710:CDS |
| AGACGACGGCGTACCTTTGG+TGG | 0.503682 | 3.3:+58404250 | MS.gene049710:CDS |
| TGGAAACCCTAGATTGAACT+TGG | 0.505999 | 3.3:+58397941 | MS.gene049710:CDS |
| TCCTTTGGTATAGACTCATC+TGG | 0.507663 | 3.3:-58397879 | None:intergenic |
| GTGGGATTTCCGCTTACCAT+TGG | 0.507745 | 3.3:+58403487 | MS.gene049710:CDS |
| CATAACCAAGGCGTATTAGT+TGG | 0.508544 | 3.3:-58404009 | None:intergenic |
| TCAGAGGCTATAATGTTAGC+TGG | 0.510971 | 3.3:+58402899 | MS.gene049710:CDS |
| GTGAAGAGCATCAATGTTAG+TGG | 0.514568 | 3.3:+58403509 | MS.gene049710:CDS |
| CAACATGATAGTACTAAAAG+AGG | 0.514647 | 3.3:+58404190 | MS.gene049710:CDS |
| TTCAAATCTCAGACTTGTTG+AGG | 0.518447 | 3.3:+58404309 | MS.gene049710:CDS |
| ATTTGCAAGGTACTTTGAAG+TGG | 0.524328 | 3.3:+58403113 | MS.gene049710:CDS |
| ATATATATGTACCTGGACAT+TGG | 0.524708 | 3.3:-58403002 | None:intergenic |
| TACTACCAACTAATACGCCT+TGG | 0.526316 | 3.3:+58404004 | MS.gene049710:CDS |
| GACAAACCTAACATTGTCAC+TGG | 0.526875 | 3.3:+58402977 | MS.gene049710:CDS |
| TTTGGAGAAGTTGAGAGTAA+AGG | 0.526899 | 3.3:-58403645 | None:intergenic |
| GGATTTCTCAAGGACTTTAG+CGG | 0.527843 | 3.3:+58404412 | MS.gene049710:CDS |
| GGTAGTATTGAGCAATGACT+TGG | 0.536048 | 3.3:-58403988 | None:intergenic |
| AAGGATAGCAGCAACACAAA+TGG | 0.537691 | 3.3:-58403214 | None:intergenic |
| TGCACCACTTAAAGAAAATG+AGG | 0.543644 | 3.3:+58402847 | MS.gene049710:CDS |
| CCTGTAGCTCAGTGGTGACA+GGG | 0.544380 | 3.3:-58398052 | None:intergenic |
| TATTTATCCAGAACTTGAGT+GGG | 0.549537 | 3.3:+58403469 | MS.gene049710:CDS |
| GAAATTCATCAAAGTTTGTG+TGG | 0.556299 | 3.3:-58404289 | None:intergenic |
| AAAGAGGTTAAGCTAAGTGA+AGG | 0.559738 | 3.3:+58403141 | MS.gene049710:CDS |
| AAGTGAAGGATACTATGTAA+TGG | 0.565226 | 3.3:+58403155 | MS.gene049710:CDS |
| GATTGGCATTCAAAAGGAAG+TGG | 0.569504 | 3.3:+58402921 | MS.gene049710:CDS |
| AGGATGCCAAGTTCAATCTA+GGG | 0.569848 | 3.3:-58397947 | None:intergenic |
| AAAGAAAATGAGGCTGCAGT+TGG | 0.571389 | 3.3:+58402857 | MS.gene049710:CDS |
| GGTTATATGTTGAGCATCCG+GGG | 0.572650 | 3.3:-58404366 | None:intergenic |
| TGTCACTGGAGCCAATGTCC+AGG | 0.573804 | 3.3:+58402991 | MS.gene049710:CDS |
| TGAGTGTGATAAACTCATCA+TGG | 0.579495 | 3.3:+58397992 | MS.gene049710:CDS |
| AGCGAGAAGCAAAGGTTGAG+TGG | 0.584467 | 3.3:-58397497 | None:intergenic |
| TCCAGCATACAGCATGCCCC+CGG | 0.584797 | 3.3:+58404349 | MS.gene049710:CDS |
| CATGAAGTTGTGAAAGACAA+TGG | 0.584886 | 3.3:+58404530 | MS.gene049710:CDS |
| CTCCATTGAGTGTGGAACCA+AGG | 0.585360 | 3.3:-58403233 | None:intergenic |
| AGAAGCAAAGGTTGAGTGGA+CGG | 0.585475 | 3.3:-58397493 | None:intergenic |
| TTTACTCTCAACTTCTCCAA+AGG | 0.585575 | 3.3:+58403647 | MS.gene049710:CDS |
| AATGGACCCTCAAAAGGCTG+TGG | 0.588314 | 3.3:+58403173 | MS.gene049710:CDS |
| ATCCTTTGTGACAACTTGGA+TGG | 0.592505 | 3.3:+58397965 | MS.gene049710:CDS |
| GCGAGGATAAAGATGATAAG+TGG | 0.592545 | 3.3:+58404488 | MS.gene049710:CDS |
| TTATTTATCCAGAACTTGAG+TGG | 0.594820 | 3.3:+58403468 | MS.gene049710:CDS |
| TGGCACTGTTGGCTCATCAG+AGG | 0.595925 | 3.3:+58402883 | MS.gene049710:CDS |
| GCAGAACAAAAGAAAACTAG+AGG | 0.597240 | 3.3:+58402943 | MS.gene049710:CDS |
| AATGAGGCTGCAGTTGGTGT+TGG | 0.597938 | 3.3:+58402863 | MS.gene049710:CDS |
| AAGTTGAATGATAAGATGAA+TGG | 0.598555 | 3.3:+58404638 | MS.gene049710:CDS |
| TTCGAACTCTCCATTGAGTG+TGG | 0.606835 | 3.3:-58403241 | None:intergenic |
| CTTTCTCTATATCAGCTACA+AGG | 0.608061 | 3.3:-58404439 | None:intergenic |
| TCATTAGGGAGGATTTCTCA+AGG | 0.609229 | 3.3:+58404402 | MS.gene049710:CDS |
| ACATTGATGCTCTTCACCAA+TGG | 0.610885 | 3.3:-58403503 | None:intergenic |
| GCCAGATGAGTCTATACCAA+AGG | 0.611743 | 3.3:+58397878 | MS.gene049710:CDS |
| TCGAAAAGAATAAGGAAACT+GGG | 0.614116 | 3.3:+58403292 | MS.gene049710:CDS |
| TTTACGCGTTGTCATTAGGG+AGG | 0.614957 | 3.3:+58404391 | MS.gene049710:CDS |
| TTCAATGTGAAGGCCACCAA+AGG | 0.619278 | 3.3:-58404263 | None:intergenic |
| CATGTGGATGCAGCTAGTGG+TGG | 0.619579 | 3.3:+58403431 | MS.gene049710:CDS |
| TGCTCTTCACCAATGGTAAG+CGG | 0.624180 | 3.3:-58403496 | None:intergenic |
| AACATGATAGTACTAAAAGA+GGG | 0.624331 | 3.3:+58404191 | MS.gene049710:CDS |
| GGTTGAGTGGACGGAAACAT+CGG | 0.624842 | 3.3:-58397484 | None:intergenic |
| ATGGGACACTCCTATTCATG+TGG | 0.625531 | 3.3:+58403415 | MS.gene049710:CDS |
| ATTCATGTGGATGCAGCTAG+TGG | 0.626108 | 3.3:+58403428 | MS.gene049710:CDS |
| TCTGACATAGCGAGAAGCAA+AGG | 0.626124 | 3.3:-58397505 | None:intergenic |
| ATGATGAGTTTATCACACTC+AGG | 0.633349 | 3.3:-58397990 | None:intergenic |
| TGTGTGGTCCTTCAATGTGA+AGG | 0.636795 | 3.3:-58404273 | None:intergenic |
| CTCCATCCAAGTTGTCACAA+AGG | 0.640690 | 3.3:-58397967 | None:intergenic |
| TTTGTTGGGAGAAATTTGCA+AGG | 0.640788 | 3.3:+58403100 | MS.gene049710:CDS |
| GTGGACGGAAACATCGGACT+CGG | 0.648788 | 3.3:-58397478 | None:intergenic |
| GATTTGGAAGAAGTTTGTGA+TGG | 0.665700 | 3.3:+58404607 | MS.gene049710:CDS |
| AACATTGTGTCGAAAGACGA+CGG | 0.672964 | 3.3:+58404236 | MS.gene049710:CDS |
| CAGAACAAAAGAAAACTAGA+GGG | 0.676928 | 3.3:+58402944 | MS.gene049710:CDS |
| GACGGAAACATCGGACTCGG+AGG | 0.684084 | 3.3:-58397475 | None:intergenic |
| AGCTTGATTCACTTACTGCG+AGG | 0.692666 | 3.3:+58404471 | MS.gene049710:CDS |
| AGGGTATACCTGTAGCTCAG+TGG | 0.694675 | 3.3:-58398060 | None:intergenic |
| GAAAGACAATGGTCAAGTAG+TGG | 0.695297 | 3.3:+58404541 | MS.gene049710:CDS |
| GTATTAATACCTCATAACCA+AGG | 0.695564 | 3.3:-58404021 | None:intergenic |
| GTTATATGTTGAGCATCCGG+GGG | 0.712403 | 3.3:-58404365 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58397456 | 58404670 | 58397456 | ID=MS.gene049710 |
| chr3.3 | mRNA | 58397456 | 58404670 | 58397456 | ID=MS.gene049710.t1;Parent=MS.gene049710 |
| chr3.3 | exon | 58397456 | 58397541 | 58397456 | ID=MS.gene049710.t1.exon1;Parent=MS.gene049710.t1 |
| chr3.3 | CDS | 58397456 | 58397541 | 58397456 | ID=cds.MS.gene049710.t1;Parent=MS.gene049710.t1 |
| chr3.3 | exon | 58397869 | 58398073 | 58397869 | ID=MS.gene049710.t1.exon2;Parent=MS.gene049710.t1 |
| chr3.3 | CDS | 58397869 | 58398073 | 58397869 | ID=cds.MS.gene049710.t1;Parent=MS.gene049710.t1 |
| chr3.3 | exon | 58402812 | 58403012 | 58402812 | ID=MS.gene049710.t1.exon3;Parent=MS.gene049710.t1 |
| chr3.3 | CDS | 58402812 | 58403012 | 58402812 | ID=cds.MS.gene049710.t1;Parent=MS.gene049710.t1 |
| chr3.3 | exon | 58403099 | 58403313 | 58403099 | ID=MS.gene049710.t1.exon4;Parent=MS.gene049710.t1 |
| chr3.3 | CDS | 58403099 | 58403313 | 58403099 | ID=cds.MS.gene049710.t1;Parent=MS.gene049710.t1 |
| chr3.3 | exon | 58403415 | 58403668 | 58403415 | ID=MS.gene049710.t1.exon5;Parent=MS.gene049710.t1 |
| chr3.3 | CDS | 58403415 | 58403668 | 58403415 | ID=cds.MS.gene049710.t1;Parent=MS.gene049710.t1 |
| chr3.3 | exon | 58403981 | 58404033 | 58403981 | ID=MS.gene049710.t1.exon6;Parent=MS.gene049710.t1 |
| chr3.3 | CDS | 58403981 | 58404033 | 58403981 | ID=cds.MS.gene049710.t1;Parent=MS.gene049710.t1 |
| chr3.3 | exon | 58404158 | 58404670 | 58404158 | ID=MS.gene049710.t1.exon7;Parent=MS.gene049710.t1 |
| chr3.3 | CDS | 58404158 | 58404670 | 58404158 | ID=cds.MS.gene049710.t1;Parent=MS.gene049710.t1 |
| Gene Sequence |
| Protein sequence |
