Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062292.t1 | XP_024640034.1 | 98.1 | 208 | 4 | 0 | 1 | 208 | 1 | 208 | 1.30E-115 | 425.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062292.t1 | Q567B1 | 50.2 | 207 | 92 | 4 | 4 | 206 | 101 | 300 | 2.8e-50 | 199.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062292.t1 | B7FLQ7 | 98.1 | 208 | 4 | 0 | 1 | 208 | 1 | 208 | 9.3e-116 | 425.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049786 | MS.gene062292 | 0.824084 | 9.78E-54 | -1.69E-46 |
| MS.gene050941 | MS.gene062292 | 0.810785 | 9.70E-51 | -1.69E-46 |
| MS.gene051452 | MS.gene062292 | 0.827423 | 1.58E-54 | -1.69E-46 |
| MS.gene051655 | MS.gene062292 | 0.807163 | 5.78E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene062292 | 0.814062 | 1.87E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene062292 | 0.821845 | 3.25E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene062292 | 0.845188 | 4.75E-59 | -1.69E-46 |
| MS.gene05469 | MS.gene062292 | 0.806476 | 8.08E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene062292 | 0.821105 | 4.82E-53 | -1.69E-46 |
| MS.gene055603 | MS.gene062292 | 0.824161 | 9.38E-54 | -1.69E-46 |
| MS.gene055623 | MS.gene062292 | 0.818162 | 2.26E-52 | -1.69E-46 |
| MS.gene056638 | MS.gene062292 | 0.847713 | 9.72E-60 | -1.69E-46 |
| MS.gene056699 | MS.gene062292 | 0.82376 | 1.16E-53 | -1.69E-46 |
| MS.gene056787 | MS.gene062292 | 0.811612 | 6.42E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene062292 | 0.849041 | 4.17E-60 | -1.69E-46 |
| MS.gene057055 | MS.gene062292 | 0.81817 | 2.25E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene062292 | 0.80444 | 2.16E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene062292 | 0.804663 | 1.94E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene062292 | 0.816895 | 4.37E-52 | -1.69E-46 |
| MS.gene05897 | MS.gene062292 | 0.807561 | 4.76E-50 | -1.69E-46 |
| MS.gene059360 | MS.gene062292 | 0.823224 | 1.55E-53 | -1.69E-46 |
| MS.gene059830 | MS.gene062292 | 0.820321 | 7.30E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene062292 | 0.825834 | 3.78E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene062292 | 0.808799 | 2.59E-50 | -1.69E-46 |
| MS.gene060191 | MS.gene062292 | 0.802353 | 5.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062292.t1 | MTR_5g092720 | 98.077 | 208 | 4 | 0 | 1 | 208 | 1 | 208 | 4.64e-156 | 430 |
| MS.gene062292.t1 | MTR_5g092720 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 6.28e-142 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062292.t1 | AT1G50670 | 81.250 | 208 | 39 | 0 | 1 | 208 | 1 | 208 | 2.57e-130 | 365 |
| MS.gene062292.t1 | AT1G50670 | 81.250 | 208 | 39 | 0 | 1 | 208 | 1 | 208 | 2.57e-130 | 365 |
| MS.gene062292.t1 | AT1G50670 | 81.250 | 208 | 39 | 0 | 1 | 208 | 1 | 208 | 2.57e-130 | 365 |
Find 51 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTACAATAGGCTGAATT+TGG | 0.239304 | 5.1:+74022642 | None:intergenic |
| TCAATATTAGCAGATTATTA+TGG | 0.285688 | 5.1:-74022080 | MS.gene062292:CDS |
| TGCTCAATTCAGATATGTTA+TGG | 0.290732 | 5.1:-74023699 | MS.gene062292:intron |
| TCTGACCAATGACTCCAATT+TGG | 0.301760 | 5.1:+74021066 | None:intergenic |
| CGATGTGGGGTATGCCAAAT+TGG | 0.302440 | 5.1:-74021080 | MS.gene062292:CDS |
| CAAATTCAGCCTATTGTAAC+TGG | 0.305952 | 5.1:-74022641 | MS.gene062292:CDS |
| AAATATTCTGAAGCATTTCT+TGG | 0.308148 | 5.1:-74022669 | MS.gene062292:CDS |
| CTCAACAGGTCCAATGCTTC+TGG | 0.312074 | 5.1:+74021606 | None:intergenic |
| AACTAACCTCCCCACTTCTC+TGG | 0.356124 | 5.1:+74022609 | None:intergenic |
| ACAAATCGCATCGTGTTGTC+TGG | 0.371459 | 5.1:+74022033 | None:intergenic |
| TCAACTCAGCAGCTTTAGTT+TGG | 0.377147 | 5.1:+74023669 | None:intergenic |
| TCCTCTGGAGCTCCTTCAAC+AGG | 0.382035 | 5.1:+74021661 | None:intergenic |
| GCGGAGCACGCTCAAGCAAC+TGG | 0.402662 | 5.1:-74020778 | MS.gene062292:CDS |
| AATGCTTCAGAATATTTCTC+AGG | 0.446244 | 5.1:+74022675 | None:intergenic |
| TTTAAAGCAATCCCCTCAAC+AGG | 0.447173 | 5.1:+74021592 | None:intergenic |
| GTATGCCAAATTGGAGTCAT+TGG | 0.454845 | 5.1:-74021071 | MS.gene062292:CDS |
| AATATTCTGAAGCATTTCTT+GGG | 0.459533 | 5.1:-74022668 | MS.gene062292:CDS |
| GGTCAGATGTCTCCTGTTGA+AGG | 0.476296 | 5.1:-74021673 | MS.gene062292:intron |
| TTTGTATGGCAAATATGGTC+TGG | 0.488633 | 5.1:+74021632 | None:intergenic |
| ATGGTCTGGTCAAAATCCTC+TGG | 0.495685 | 5.1:+74021646 | None:intergenic |
| TCGTGTTGTCTGGATATCAT+AGG | 0.498959 | 5.1:+74022043 | None:intergenic |
| GTCAAGAATCCAGTTACAAT+AGG | 0.506795 | 5.1:+74022632 | None:intergenic |
| GGAAGGTAATTATTCTGAAA+GGG | 0.508302 | 5.1:-74021907 | MS.gene062292:CDS |
| AGGAAGGTAATTATTCTGAA+AGG | 0.513503 | 5.1:-74021908 | MS.gene062292:CDS |
| CAGAAGCATTGGACCTGTTG+AGG | 0.521801 | 5.1:-74021605 | MS.gene062292:CDS |
| CCCACATCGTAGAGTGAAGT+TGG | 0.523150 | 5.1:+74021094 | None:intergenic |
| ACTAACCTCCCCACTTCTCT+GGG | 0.530654 | 5.1:+74022610 | None:intergenic |
| AGAAGCATTGGACCTGTTGA+GGG | 0.539369 | 5.1:-74021604 | MS.gene062292:CDS |
| TAAAGCTGCTGAGTTGAGAC+AGG | 0.540696 | 5.1:-74023663 | MS.gene062292:intron |
| ACGATGCGATTTGTACGGTC+AGG | 0.543026 | 5.1:-74022024 | MS.gene062292:intron |
| CCAACTTCACTCTACGATGT+GGG | 0.545015 | 5.1:-74021094 | MS.gene062292:CDS |
| GATTCTTGACCCAGAGAAGT+GGG | 0.546552 | 5.1:-74022619 | MS.gene062292:CDS |
| TCCTGTTGAAGGAGCTCCAG+AGG | 0.552078 | 5.1:-74021662 | MS.gene062292:CDS |
| ATACAAAAGACCAGAAGCAT+TGG | 0.561507 | 5.1:-74021616 | MS.gene062292:CDS |
| AATTGGAGTCATTGGTCAGA+AGG | 0.571915 | 5.1:-74021063 | MS.gene062292:intron |
| GAATTGAGGACTACCTATGT+TGG | 0.572934 | 5.1:+74021557 | None:intergenic |
| TAGAGTGAAGTTGGCAGTGT+CGG | 0.574302 | 5.1:+74021103 | None:intergenic |
| GGATTCTTGACCCAGAGAAG+TGG | 0.579954 | 5.1:-74022620 | MS.gene062292:CDS |
| TGAATATATTCAGGAGGCAG+CGG | 0.588506 | 5.1:-74020797 | MS.gene062292:intron |
| ACAACACGATGCGATTTGTA+CGG | 0.591398 | 5.1:-74022029 | MS.gene062292:CDS |
| AAAAGACAACTATTATCAGA+AGG | 0.594601 | 5.1:+74023817 | None:intergenic |
| GGAAGGTGTTGTTGTGAGAA+GGG | 0.595151 | 5.1:-74023845 | MS.gene062292:CDS |
| TGGAAGGTGTTGTTGTGAGA+AGG | 0.603137 | 5.1:-74023846 | MS.gene062292:CDS |
| TATACAATCTAAATCATGGA+AGG | 0.603573 | 5.1:-74023862 | None:intergenic |
| GCCAACTTCACTCTACGATG+TGG | 0.618112 | 5.1:-74021095 | MS.gene062292:CDS |
| GAAGCATTGGACCTGTTGAG+GGG | 0.634365 | 5.1:-74021603 | MS.gene062292:CDS |
| AGGGTGATGCTGATTTATGA+TGG | 0.634654 | 5.1:-74021888 | MS.gene062292:CDS |
| CTTGACCCAGAGAAGTGGGG+AGG | 0.656264 | 5.1:-74022615 | MS.gene062292:intron |
| CAACTTCACTCTACGATGTG+GGG | 0.662033 | 5.1:-74021093 | MS.gene062292:CDS |
| ATACAGCTAAAGCATCGTAG+TGG | 0.669725 | 5.1:+74021862 | None:intergenic |
| ATTCTTGACCCAGAGAAGTG+GGG | 0.684824 | 5.1:-74022618 | MS.gene062292:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTACTTATATTTAAAAC+CGG | - | chr5.1:74021699-74021718 | MS.gene062292:intron | 10.0% |
| !! | AAACTTCAAATTATCATATA+TGG | - | chr5.1:74021516-74021535 | MS.gene062292:intron | 15.0% |
| !! | AGTAAAAATGTATATGTATT+TGG | + | chr5.1:74021687-74021706 | None:intergenic | 15.0% |
| !! | ATTCTTATTGAATCTTTATA+TGG | - | chr5.1:74023059-74023078 | MS.gene062292:intron | 15.0% |
| !!! | AATGTCATTTTTAAGTAAAT+AGG | + | chr5.1:74023641-74023660 | None:intergenic | 15.0% |
| !!! | TAAAAATATTTCACTTTTCA+AGG | + | chr5.1:74022830-74022849 | None:intergenic | 15.0% |
| !! | AAATGTGTATTCGTTATTTA+AGG | + | chr5.1:74021465-74021484 | None:intergenic | 20.0% |
| !! | AACATAAAAATGAGTTTCAA+AGG | - | chr5.1:74022378-74022397 | MS.gene062292:intron | 20.0% |
| !! | AATAGATGATTAGTAATTTC+TGG | + | chr5.1:74022774-74022793 | None:intergenic | 20.0% |
| !! | ACATAAAAATGAGTTTCAAA+GGG | - | chr5.1:74022379-74022398 | MS.gene062292:intron | 20.0% |
| !! | GTCAGAATTATAAAAATTAC+AGG | + | chr5.1:74023762-74023781 | None:intergenic | 20.0% |
| !! | TAAAGATTCAATAAGAATTG+AGG | + | chr5.1:74023057-74023076 | None:intergenic | 20.0% |
| !! | TAAATATATACCAAGTACAT+AGG | - | chr5.1:74022187-74022206 | MS.gene062292:intron | 20.0% |
| !! | TATAAAAATTACAGGTAAGT+AGG | + | chr5.1:74023754-74023773 | None:intergenic | 20.0% |
| !! | TCAATATTAGCAGATTATTA+TGG | - | chr5.1:74022517-74022536 | MS.gene062292:intron | 20.0% |
| !! | TCTAAATCATCCTAAAATTA+TGG | + | chr5.1:74022120-74022139 | None:intergenic | 20.0% |
| !! | TTGTGTACTTCTATATATAA+GGG | - | chr5.1:74023105-74023124 | MS.gene062292:intron | 20.0% |
| !!! | ATGACCAGAATTTTAAAAAT+AGG | + | chr5.1:74021127-74021146 | None:intergenic | 20.0% |
| !!! | ATTTTATTAAAGACCAACAT+AGG | - | chr5.1:74023027-74023046 | MS.gene062292:intron | 20.0% |
| !!! | ATTTTTCTGTGAATATATTC+AGG | - | chr5.1:74023791-74023810 | MS.gene062292:intron | 20.0% |
| !!! | CTATTAGTTTTTCATTAGTT+TGG | - | chr5.1:74022442-74022461 | MS.gene062292:intron | 20.0% |
| !!! | TGAACTATAGATTTAGATTT+TGG | - | chr5.1:74023224-74023243 | MS.gene062292:intron | 20.0% |
| !!! | TGACCAGAATTTTAAAAATA+GGG | + | chr5.1:74021126-74021145 | None:intergenic | 20.0% |
| !!! | TGTTATATTTTACATGCTAA+AGG | - | chr5.1:74021873-74021892 | MS.gene062292:CDS | 20.0% |
| ! | AAAAGACAACTATTATCAGA+AGG | + | chr5.1:74020783-74020802 | None:intergenic | 25.0% |
| ! | AAAGTCATATTTGAACATCT+AGG | - | chr5.1:74022263-74022282 | MS.gene062292:intron | 25.0% |
| ! | AACTGAAATTAGGAAAAACA+AGG | + | chr5.1:74021801-74021820 | None:intergenic | 25.0% |
| ! | AATACGTTGATATGTATGTT+TGG | - | chr5.1:74021280-74021299 | MS.gene062292:intron | 25.0% |
| ! | ACCAATTTAGTTACTGAAAT+AGG | + | chr5.1:74023714-74023733 | None:intergenic | 25.0% |
| ! | ACTGAAATTAGGAAAAACAA+GGG | + | chr5.1:74021800-74021819 | None:intergenic | 25.0% |
| ! | ATCATTAGGCAACATAAAAA+TGG | + | chr5.1:74022891-74022910 | None:intergenic | 25.0% |
| ! | CTCTATAACAGAAAATTCTT+CGG | - | chr5.1:74023681-74023700 | MS.gene062292:CDS | 25.0% |
| ! | GTTGTGTACTTCTATATATA+AGG | - | chr5.1:74023104-74023123 | MS.gene062292:intron | 25.0% |
| ! | TCCTATTTCAGTAACTAAAT+TGG | - | chr5.1:74023710-74023729 | MS.gene062292:intron | 25.0% |
| ! | TTAGTAGAAAACTAGATACA+AGG | - | chr5.1:74021055-74021074 | MS.gene062292:intron | 25.0% |
| !! | AATTTAAAACAGCCATGATT+CGG | + | chr5.1:74022026-74022045 | None:intergenic | 25.0% |
| !! | ACTTATATTTAAAACCGGAA+GGG | - | chr5.1:74021704-74021723 | MS.gene062292:intron | 25.0% |
| !! | TACTTATATTTAAAACCGGA+AGG | - | chr5.1:74021703-74021722 | MS.gene062292:intron | 25.0% |
| !!! | AAATATTCTGAAGCATTTCT+TGG | - | chr5.1:74021928-74021947 | MS.gene062292:intron | 25.0% |
| !!! | AATATTCTGAAGCATTTCTT+GGG | - | chr5.1:74021929-74021948 | MS.gene062292:intron | 25.0% |
| !!! | ATAAGGGTTCTCTTATTTTT+CGG | - | chr5.1:74023121-74023140 | MS.gene062292:intron | 25.0% |
| !!! | CACATTTGATTGTTTTTCTT+TGG | - | chr5.1:74021478-74021497 | MS.gene062292:intron | 25.0% |
| !!! | GGACTCTAAAATCATTAATT+TGG | - | chr5.1:74021305-74021324 | MS.gene062292:intron | 25.0% |
| !!! | TCTCCCTATTTTTAAAATTC+TGG | - | chr5.1:74021120-74021139 | MS.gene062292:CDS | 25.0% |
| !!! | TTAAGTACCAAAAGTTTTGT+CGG | - | chr5.1:74022335-74022354 | MS.gene062292:intron | 25.0% |
| AACTCTTCTGTTTGCAAATT+TGG | - | chr5.1:74022409-74022428 | MS.gene062292:intron | 30.0% | |
| AACTTAACAAGCATAAACGA+AGG | + | chr5.1:74021095-74021114 | None:intergenic | 30.0% | |
| AATGCTTCAGAATATTTCTC+AGG | + | chr5.1:74021925-74021944 | None:intergenic | 30.0% | |
| AGGAAGGTAATTATTCTGAA+AGG | - | chr5.1:74022689-74022708 | MS.gene062292:CDS | 30.0% | |
| ATCACATAAAGCAAAGAATC+AGG | + | chr5.1:74023573-74023592 | None:intergenic | 30.0% | |
| CAATGCATGTTATGTCAATT+TGG | - | chr5.1:74021023-74021042 | MS.gene062292:intron | 30.0% | |
| CTAATGATTACTCCTTGTAT+GGG | - | chr5.1:74022903-74022922 | MS.gene062292:intron | 30.0% | |
| GAACTGAAAATAATCAGAGA+AGG | + | chr5.1:74021562-74021581 | None:intergenic | 30.0% | |
| GCTTGACATCTACAAAATTA+AGG | - | chr5.1:74022851-74022870 | MS.gene062292:intron | 30.0% | |
| GGTATTACACAGTAATACAT+AGG | - | chr5.1:74021586-74021605 | MS.gene062292:CDS | 30.0% | |
| GTAATCAGCAAAAACAAGAA+CGG | + | chr5.1:74022662-74022681 | None:intergenic | 30.0% | |
| TGAGCAAAGAATATTACAAG+TGG | + | chr5.1:74020865-74020884 | None:intergenic | 30.0% | |
| TGCTCAATTCAGATATGTTA+TGG | - | chr5.1:74020898-74020917 | MS.gene062292:intron | 30.0% | |
| TTATCAAAAGCCAAAGTGTA+AGG | + | chr5.1:74022155-74022174 | None:intergenic | 30.0% | |
| TTCATATGTTGTATCCAACT+TGG | - | chr5.1:74021179-74021198 | MS.gene062292:intron | 30.0% | |
| TTCCTAATTTCAGTTCTCTT+TGG | - | chr5.1:74021806-74021825 | MS.gene062292:intron | 30.0% | |
| TTTCTGTGAATATATTCAGG+AGG | - | chr5.1:74023794-74023813 | MS.gene062292:intron | 30.0% | |
| TTTGCTTTATGTGATATGCA+TGG | - | chr5.1:74023578-74023597 | MS.gene062292:intron | 30.0% | |
| ! | AAACACTTTTACTAGCACAA+TGG | + | chr5.1:74023325-74023344 | None:intergenic | 30.0% |
| ! | AGTTGTCTTTTTAATGCAGT+TGG | - | chr5.1:74020792-74020811 | MS.gene062292:intron | 30.0% |
| ! | ATTTTCTACTCAACCTAGTT+TGG | - | chr5.1:74023375-74023394 | MS.gene062292:intron | 30.0% |
| ! | CTTATATTTAAAACCGGAAG+GGG | - | chr5.1:74021705-74021724 | MS.gene062292:intron | 30.0% |
| ! | GGAAGGTAATTATTCTGAAA+GGG | - | chr5.1:74022690-74022709 | MS.gene062292:CDS | 30.0% |
| ! | GTTGTCTTTTTAATGCAGTT+GGG | - | chr5.1:74020793-74020812 | MS.gene062292:intron | 30.0% |
| !! | AATATTTCACTTTTCAAGGC+AGG | + | chr5.1:74022826-74022845 | None:intergenic | 30.0% |
| !! | ATTGATTTTCTCTCACACTT+CGG | - | chr5.1:74022791-74022810 | MS.gene062292:intron | 30.0% |
| !! | ATTGTGCTAGTAAAAGTGTT+TGG | - | chr5.1:74023324-74023343 | MS.gene062292:intron | 30.0% |
| !! | TTTTGCTGATTACTTTTGAC+AGG | - | chr5.1:74022669-74022688 | MS.gene062292:CDS | 30.0% |
| !!! | TAAGGGTTCTCTTATTTTTC+GGG | - | chr5.1:74023122-74023141 | MS.gene062292:intron | 30.0% |
| AAGCAAAGAATCAGGTACTT+AGG | + | chr5.1:74023565-74023584 | None:intergenic | 35.0% | |
| ATTTGGTACTAGAACACCAT+GGG | + | chr5.1:74021670-74021689 | None:intergenic | 35.0% | |
| CAAATTCAGCCTATTGTAAC+TGG | - | chr5.1:74021956-74021975 | MS.gene062292:intron | 35.0% | |
| CACCAAAGAGAACTGAAATT+AGG | + | chr5.1:74021811-74021830 | None:intergenic | 35.0% | |
| CAGTTACAATAGGCTGAATT+TGG | + | chr5.1:74021958-74021977 | None:intergenic | 35.0% | |
| CCAACTTGGTTAAATGTACT+TGG | - | chr5.1:74021193-74021212 | MS.gene062292:intron | 35.0% | |
| CCAAGTACATTTAACCAAGT+TGG | + | chr5.1:74021196-74021215 | None:intergenic | 35.0% | |
| CCATACAAGGAGTAATCATT+AGG | + | chr5.1:74022905-74022924 | None:intergenic | 35.0% | |
| CCTAATGATTACTCCTTGTA+TGG | - | chr5.1:74022902-74022921 | MS.gene062292:intron | 35.0% | |
| CTAATGTACTCCTATGTACT+TGG | + | chr5.1:74022200-74022219 | None:intergenic | 35.0% | |
| CTATGAGAATCCTTACACTT+TGG | - | chr5.1:74022142-74022161 | MS.gene062292:intron | 35.0% | |
| CTATGGATATGCAAAGTGAA+TGG | - | chr5.1:74020970-74020989 | MS.gene062292:intron | 35.0% | |
| CTCAAGATGATAACCAAACT+AGG | + | chr5.1:74023391-74023410 | None:intergenic | 35.0% | |
| GTATTACTGTGTAATACCTC+AGG | + | chr5.1:74021584-74021603 | None:intergenic | 35.0% | |
| GTCAAGAATCCAGTTACAAT+AGG | + | chr5.1:74021968-74021987 | None:intergenic | 35.0% | |
| GTCATATTTGAACATCTAGG+AGG | - | chr5.1:74022266-74022285 | MS.gene062292:intron | 35.0% | |
| TACTGGAAGCAGAATTAATC+CGG | + | chr5.1:74023422-74023441 | None:intergenic | 35.0% | |
| TAGTTACTGAAATAGGAACG+TGG | + | chr5.1:74023707-74023726 | None:intergenic | 35.0% | |
| TATTTGGTACTAGAACACCA+TGG | + | chr5.1:74021671-74021690 | None:intergenic | 35.0% | |
| TTTGTATGGCAAATATGGTC+TGG | + | chr5.1:74022968-74022987 | None:intergenic | 35.0% | |
| ! | ATACAAAAGACCAGAAGCAT+TGG | - | chr5.1:74022981-74023000 | MS.gene062292:intron | 35.0% |
| ! | CAGGTGATTTTTCTTTGCTA+TGG | - | chr5.1:74020953-74020972 | MS.gene062292:intron | 35.0% |
| ! | CGGTGTTCTACCATAATTTT+AGG | - | chr5.1:74022107-74022126 | MS.gene062292:intron | 35.0% |
| ! | CTGATTATTTTCAGTTCCTG+AGG | - | chr5.1:74021565-74021584 | MS.gene062292:intron | 35.0% |
| ! | GGTCTTTTGTATGGCAAATA+TGG | + | chr5.1:74022973-74022992 | None:intergenic | 35.0% |
| ! | GTTTTTCTTTGGCAAAAGCT+TGG | - | chr5.1:74021489-74021508 | MS.gene062292:intron | 35.0% |
| ! | TTCAGAACCGACAAAACTTT+TGG | + | chr5.1:74022345-74022364 | None:intergenic | 35.0% |
| ! | TTGATTTTCTCTCACACTTC+GGG | - | chr5.1:74022792-74022811 | MS.gene062292:intron | 35.0% |
| ! | TTTAAGACTTACCAGCGAAT+CGG | - | chr5.1:74021765-74021784 | MS.gene062292:intron | 35.0% |
| !! | AATGCTTCTGGTCTTTTGTA+TGG | + | chr5.1:74022982-74023001 | None:intergenic | 35.0% |
| !! | CAAGTTAGAACTGCTACTTT+CGG | - | chr5.1:74022087-74022106 | MS.gene062292:CDS | 35.0% |
| !!! | TTTTCGGGTGTGTGTATTTA+AGG | - | chr5.1:74023137-74023156 | MS.gene062292:intron | 35.0% |
| !!! | TTTTGTCGGTTCTGAATTTG+TGG | - | chr5.1:74022349-74022368 | MS.gene062292:intron | 35.0% |
| AACGGAAAGGTTCAGTTACT+AGG | + | chr5.1:74022644-74022663 | None:intergenic | 40.0% | |
| AAGTGTTTGGTTGTCTTGCA+TGG | - | chr5.1:74023337-74023356 | MS.gene062292:intron | 40.0% | |
| AATCATTTGTACCAAGCTGG+GGG | + | chr5.1:74020842-74020861 | None:intergenic | 40.0% | |
| AATTGGAGTCATTGGTCAGA+AGG | - | chr5.1:74023534-74023553 | MS.gene062292:intron | 40.0% | |
| ACAACACGATGCGATTTGTA+CGG | - | chr5.1:74022568-74022587 | MS.gene062292:intron | 40.0% | |
| ACGGAAAGGTTCAGTTACTA+GGG | + | chr5.1:74022643-74022662 | None:intergenic | 40.0% | |
| AGGGTCCAAAATATTAGCAC+TGG | + | chr5.1:74023451-74023470 | None:intergenic | 40.0% | |
| ATGTATGTTGTCAGCTGTGA+AGG | - | chr5.1:74023288-74023307 | MS.gene062292:intron | 40.0% | |
| CAGCAAAAACAAGAACGGAA+AGG | + | chr5.1:74022657-74022676 | None:intergenic | 40.0% | |
| CCAAAAAGAAATACCCCTTC+CGG | + | chr5.1:74021721-74021740 | None:intergenic | 40.0% | |
| CGTTGATATGTATGTTTGGC+TGG | - | chr5.1:74021284-74021303 | MS.gene062292:intron | 40.0% | |
| GAAGCTATATTCCGTTGTGA+AGG | - | chr5.1:74022481-74022500 | MS.gene062292:intron | 40.0% | |
| GAATCATTTGTACCAAGCTG+GGG | + | chr5.1:74020843-74020862 | None:intergenic | 40.0% | |
| GAATTGAGGACTACCTATGT+TGG | + | chr5.1:74023043-74023062 | None:intergenic | 40.0% | |
| GACTTATGTCTTCCGAATCA+TGG | - | chr5.1:74022011-74022030 | MS.gene062292:intron | 40.0% | |
| GGAATCATTTGTACCAAGCT+GGG | + | chr5.1:74020844-74020863 | None:intergenic | 40.0% | |
| GTATGCCAAATTGGAGTCAT+TGG | - | chr5.1:74023526-74023545 | MS.gene062292:intron | 40.0% | |
| TCGTGTTGTCTGGATATCAT+AGG | + | chr5.1:74022557-74022576 | None:intergenic | 40.0% | |
| TCTGACCAATGACTCCAATT+TGG | + | chr5.1:74023534-74023553 | None:intergenic | 40.0% | |
| TGAATATATTCAGGAGGCAG+CGG | - | chr5.1:74023800-74023819 | MS.gene062292:intron | 40.0% | |
| TGGAATCATTTGTACCAAGC+TGG | + | chr5.1:74020845-74020864 | None:intergenic | 40.0% | |
| TTTGGTACTAGAACACCATG+GGG | + | chr5.1:74021669-74021688 | None:intergenic | 40.0% | |
| ! | ATCATCTTGAGTTGCATCTC+CGG | - | chr5.1:74023400-74023419 | MS.gene062292:intron | 40.0% |
| ! | CCAAAATATTAGCACTGGAG+AGG | + | chr5.1:74023446-74023465 | None:intergenic | 40.0% |
| ! | CCTCTCCAGTGCTAATATTT+TGG | - | chr5.1:74023443-74023462 | MS.gene062292:intron | 40.0% |
| ! | TCAACTCAGCAGCTTTAGTT+TGG | + | chr5.1:74020931-74020950 | None:intergenic | 40.0% |
| ! | TTTAAAGCAATCCCCTCAAC+AGG | + | chr5.1:74023008-74023027 | None:intergenic | 40.0% |
| !! | AGGGTGATGCTGATTTATGA+TGG | - | chr5.1:74022709-74022728 | MS.gene062292:intron | 40.0% |
| !! | ATACAGCTAAAGCATCGTAG+TGG | + | chr5.1:74022738-74022757 | None:intergenic | 40.0% |
| !! | GCTGATTACTTTTGACAGGA+AGG | - | chr5.1:74022673-74022692 | MS.gene062292:CDS | 40.0% |
| !! | TATTTTGGACCCTCATTCTC+AGG | - | chr5.1:74023458-74023477 | MS.gene062292:intron | 40.0% |
| !! | TGGGGGTGCTATAAAGAAAA+AGG | + | chr5.1:74020825-74020844 | None:intergenic | 40.0% |
| ACAAATCGCATCGTGTTGTC+TGG | + | chr5.1:74022567-74022586 | None:intergenic | 45.0% | |
| AGTCCTGAAATTGTGCGTGT+AGG | - | chr5.1:74023615-74023634 | MS.gene062292:intron | 45.0% | |
| ATCTCCGTTTCCTGAGAATG+AGG | + | chr5.1:74023471-74023490 | None:intergenic | 45.0% | |
| ATGGTCTGGTCAAAATCCTC+TGG | + | chr5.1:74022954-74022973 | None:intergenic | 45.0% | |
| ATTCTTGACCCAGAGAAGTG+GGG | - | chr5.1:74021979-74021998 | MS.gene062292:intron | 45.0% | |
| CAACTTCACTCTACGATGTG+GGG | - | chr5.1:74023504-74023523 | MS.gene062292:intron | 45.0% | |
| CCAACTTCACTCTACGATGT+GGG | - | chr5.1:74023503-74023522 | MS.gene062292:intron | 45.0% | |
| GATTCTTGACCCAGAGAAGT+GGG | - | chr5.1:74021978-74021997 | MS.gene062292:intron | 45.0% | |
| GTTCAATCGCACCTTCACAA+CGG | + | chr5.1:74022495-74022514 | None:intergenic | 45.0% | |
| TAGAGTGAAGTTGGCAGTGT+CGG | + | chr5.1:74023497-74023516 | None:intergenic | 45.0% | |
| TCTCCGTTTCCTGAGAATGA+GGG | + | chr5.1:74023470-74023489 | None:intergenic | 45.0% | |
| TCTGCAACAGTCAGTTGTTG+TGG | - | chr5.1:74022303-74022322 | MS.gene062292:intron | 45.0% | |
| TTGGTACTAGAACACCATGG+GGG | + | chr5.1:74021668-74021687 | None:intergenic | 45.0% | |
| ! | ATTAGCACTGGAGAGGATAC+TGG | + | chr5.1:74023439-74023458 | None:intergenic | 45.0% |
| ! | GGATTAAAGTTCCGATTCGC+TGG | + | chr5.1:74021779-74021798 | None:intergenic | 45.0% |
| ! | TAAAGCTGCTGAGTTGAGAC+AGG | - | chr5.1:74020934-74020953 | MS.gene062292:intron | 45.0% |
| !! | AGAAGCATTGGACCTGTTGA+GGG | - | chr5.1:74022993-74023012 | MS.gene062292:intron | 45.0% |
| !! | GGAAGGTGTTGTTGTGAGAA+GGG | - | chr5.1:74020752-74020771 | MS.gene062292:CDS | 45.0% |
| !! | GGGGTTGATGGATGATAGTT+AGG | + | chr5.1:74021649-74021668 | None:intergenic | 45.0% |
| !! | TGGAAGGTGTTGTTGTGAGA+AGG | - | chr5.1:74020751-74020770 | MS.gene062292:CDS | 45.0% |
| !!! | CCGGAAGGGGTATTTCTTTT+TGG | - | chr5.1:74021718-74021737 | MS.gene062292:intron | 45.0% |
| !! | TAAATTATAAAATTGTTTAT+AGG | - | chr5.1:74022040-74022059 | MS.gene062292:CDS | 5.0% |
| AACTAACCTCCCCACTTCTC+TGG | + | chr5.1:74021991-74022010 | None:intergenic | 50.0% | |
| ACGATGCGATTTGTACGGTC+AGG | - | chr5.1:74022573-74022592 | MS.gene062292:intron | 50.0% | |
| ACTAACCTCCCCACTTCTCT+GGG | + | chr5.1:74021990-74022009 | None:intergenic | 50.0% | |
| AGGCCTACACGCACAATTTC+AGG | + | chr5.1:74023621-74023640 | None:intergenic | 50.0% | |
| CCCACATCGTAGAGTGAAGT+TGG | + | chr5.1:74023506-74023525 | None:intergenic | 50.0% | |
| CGATGTGGGGTATGCCAAAT+TGG | - | chr5.1:74023517-74023536 | MS.gene062292:intron | 50.0% | |
| CTATCATCCATCAACCCCCA+TGG | - | chr5.1:74021651-74021670 | MS.gene062292:CDS | 50.0% | |
| CTCAACAGGTCCAATGCTTC+TGG | + | chr5.1:74022994-74023013 | None:intergenic | 50.0% | |
| GCCAACTTCACTCTACGATG+TGG | - | chr5.1:74023502-74023521 | MS.gene062292:intron | 50.0% | |
| GGACCCTCATTCTCAGGAAA+CGG | - | chr5.1:74023464-74023483 | MS.gene062292:intron | 50.0% | |
| GGAGACATCTGACCCATACA+AGG | + | chr5.1:74022918-74022937 | None:intergenic | 50.0% | |
| GGATTCTTGACCCAGAGAAG+TGG | - | chr5.1:74021977-74021996 | MS.gene062292:intron | 50.0% | |
| GGTCAGATGTCTCCTGTTGA+AGG | - | chr5.1:74022924-74022943 | MS.gene062292:intron | 50.0% | |
| TAGAACACCATGGGGGTTGA+TGG | + | chr5.1:74021661-74021680 | None:intergenic | 50.0% | |
| TCTTTATAGCACCCCCAGCT+TGG | - | chr5.1:74020828-74020847 | MS.gene062292:intron | 50.0% | |
| !! | CAGAAGCATTGGACCTGTTG+AGG | - | chr5.1:74022992-74023011 | MS.gene062292:intron | 50.0% |
| !! | GAAGCATTGGACCTGTTGAG+GGG | - | chr5.1:74022994-74023013 | MS.gene062292:intron | 50.0% |
| TCCTGTTGAAGGAGCTCCAG+AGG | - | chr5.1:74022935-74022954 | MS.gene062292:intron | 55.0% | |
| !! | TCCTCTGGAGCTCCTTCAAC+AGG | + | chr5.1:74022939-74022958 | None:intergenic | 55.0% |
| CTTGACCCAGAGAAGTGGGG+AGG | - | chr5.1:74021982-74022001 | MS.gene062292:intron | 60.0% | |
| GCGGAGCACGCTCAAGCAAC+TGG | - | chr5.1:74023819-74023838 | MS.gene062292:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 74020750 | 74023869 | 74020750 | ID=MS.gene062292 |
| chr5.1 | mRNA | 74020750 | 74023869 | 74020750 | ID=MS.gene062292.t1;Parent=MS.gene062292 |
| chr5.1 | exon | 74023805 | 74023869 | 74023805 | ID=MS.gene062292.t1.exon1;Parent=MS.gene062292.t1 |
| chr5.1 | CDS | 74023805 | 74023869 | 74023805 | ID=cds.MS.gene062292.t1;Parent=MS.gene062292.t1 |
| chr5.1 | exon | 74023664 | 74023709 | 74023664 | ID=MS.gene062292.t1.exon2;Parent=MS.gene062292.t1 |
| chr5.1 | CDS | 74023664 | 74023709 | 74023664 | ID=cds.MS.gene062292.t1;Parent=MS.gene062292.t1 |
| chr5.1 | exon | 74022616 | 74022724 | 74022616 | ID=MS.gene062292.t1.exon3;Parent=MS.gene062292.t1 |
| chr5.1 | CDS | 74022616 | 74022724 | 74022616 | ID=cds.MS.gene062292.t1;Parent=MS.gene062292.t1 |
| chr5.1 | exon | 74022025 | 74022116 | 74022025 | ID=MS.gene062292.t1.exon4;Parent=MS.gene062292.t1 |
| chr5.1 | CDS | 74022025 | 74022116 | 74022025 | ID=cds.MS.gene062292.t1;Parent=MS.gene062292.t1 |
| chr5.1 | exon | 74021866 | 74021928 | 74021866 | ID=MS.gene062292.t1.exon5;Parent=MS.gene062292.t1 |
| chr5.1 | CDS | 74021866 | 74021928 | 74021866 | ID=cds.MS.gene062292.t1;Parent=MS.gene062292.t1 |
| chr5.1 | exon | 74021571 | 74021689 | 74021571 | ID=MS.gene062292.t1.exon6;Parent=MS.gene062292.t1 |
| chr5.1 | CDS | 74021571 | 74021689 | 74021571 | ID=cds.MS.gene062292.t1;Parent=MS.gene062292.t1 |
| chr5.1 | exon | 74021064 | 74021139 | 74021064 | ID=MS.gene062292.t1.exon7;Parent=MS.gene062292.t1 |
| chr5.1 | CDS | 74021064 | 74021139 | 74021064 | ID=cds.MS.gene062292.t1;Parent=MS.gene062292.t1 |
| chr5.1 | exon | 74020750 | 74020806 | 74020750 | ID=MS.gene062292.t1.exon8;Parent=MS.gene062292.t1 |
| chr5.1 | CDS | 74020750 | 74020806 | 74020750 | ID=cds.MS.gene062292.t1;Parent=MS.gene062292.t1 |
| Gene Sequence |
| Protein sequence |
