Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063128.t1 | XP_003603997.1 | 97.7 | 129 | 3 | 0 | 1 | 129 | 98 | 226 | 1.10E-56 | 229.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063128.t1 | Q8C3X2 | 25.9 | 135 | 82 | 2 | 10 | 126 | 117 | 251 | 4.0e-07 | 55.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063128.t1 | B7FKU2 | 97.7 | 129 | 3 | 0 | 1 | 129 | 96 | 224 | 8.0e-57 | 229.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene063128 | 0.832668 | 8.29E-56 | -1.69E-46 |
| MS.gene049378 | MS.gene063128 | 0.850418 | 1.72E-60 | -1.69E-46 |
| MS.gene050226 | MS.gene063128 | 0.812477 | 4.16E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene063128 | 0.822507 | 2.28E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene063128 | 0.832199 | 1.08E-55 | -1.69E-46 |
| MS.gene050303 | MS.gene063128 | 0.800781 | 1.23E-48 | -1.69E-46 |
| MS.gene050623 | MS.gene063128 | -0.852304 | 5.04E-61 | -1.69E-46 |
| MS.gene050642 | MS.gene063128 | 0.834015 | 3.83E-56 | -1.69E-46 |
| MS.gene050719 | MS.gene063128 | 0.822909 | 1.84E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene063128 | 0.827685 | 1.36E-54 | -1.69E-46 |
| MS.gene050724 | MS.gene063128 | 0.818781 | 1.64E-52 | -1.69E-46 |
| MS.gene050824 | MS.gene063128 | 0.805813 | 1.11E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene063128 | 0.805651 | 1.20E-49 | -1.69E-46 |
| MS.gene051349 | MS.gene063128 | 0.829953 | 3.86E-55 | -1.69E-46 |
| MS.gene051452 | MS.gene063128 | 0.831038 | 2.09E-55 | -1.69E-46 |
| MS.gene051757 | MS.gene063128 | 0.810029 | 1.41E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene063128 | 0.822521 | 2.27E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene063128 | 0.800525 | 1.38E-48 | -1.69E-46 |
| MS.gene052176 | MS.gene063128 | 0.838774 | 2.35E-57 | -1.69E-46 |
| MS.gene052302 | MS.gene063128 | 0.809999 | 1.43E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene063128 | -0.807357 | 5.26E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene063128 | 0.824935 | 6.16E-54 | -1.69E-46 |
| MS.gene052426 | MS.gene063128 | 0.80586 | 1.09E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene063128 | 0.823166 | 1.60E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene063128 | 0.827789 | 1.29E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene063128 | 0.829802 | 4.20E-55 | -1.69E-46 |
| MS.gene057079 | MS.gene063128 | 0.808428 | 3.11E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene063128 | 0.81539 | 9.47E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene063128 | 0.802099 | 6.59E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene063128 | 0.809435 | 1.89E-50 | -1.69E-46 |
| MS.gene058549 | MS.gene063128 | 0.804375 | 2.23E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene063128 | 0.801519 | 8.67E-49 | -1.69E-46 |
| MS.gene059249 | MS.gene063128 | 0.837722 | 4.40E-57 | -1.69E-46 |
| MS.gene05979 | MS.gene063128 | 0.801756 | 7.75E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene063128 | 0.815342 | 9.71E-52 | -1.69E-46 |
| MS.gene060084 | MS.gene063128 | 0.803617 | 3.20E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene063128 | 0.820532 | 6.53E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene063128 | 0.807014 | 6.22E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene063128 | 0.816243 | 6.11E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene063128 | 0.804929 | 1.71E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene063128 | -0.816371 | 5.72E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063128.t1 | MTR_3g117390 | 97.674 | 129 | 3 | 0 | 1 | 129 | 98 | 226 | 9.42e-89 | 257 |
| MS.gene063128.t1 | MTR_5g021410 | 82.171 | 129 | 23 | 0 | 1 | 129 | 105 | 233 | 5.71e-76 | 225 |
| MS.gene063128.t1 | MTR_8g076260 | 81.395 | 129 | 24 | 0 | 1 | 129 | 113 | 241 | 5.57e-75 | 223 |
| MS.gene063128.t1 | MTR_5g021410 | 82.090 | 67 | 12 | 0 | 1 | 67 | 105 | 171 | 2.58e-35 | 120 |
| MS.gene063128.t1 | MTR_5g021410 | 75.510 | 49 | 12 | 0 | 1 | 49 | 105 | 153 | 5.81e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063128.t1 | AT2G16460 | 86.047 | 129 | 18 | 0 | 1 | 129 | 102 | 230 | 1.77e-79 | 234 |
| MS.gene063128.t1 | AT3G51090 | 77.519 | 129 | 29 | 0 | 1 | 129 | 170 | 298 | 1.39e-70 | 213 |
| MS.gene063128.t1 | AT3G51090 | 74.444 | 90 | 23 | 0 | 1 | 90 | 170 | 259 | 8.56e-43 | 142 |
| MS.gene063128.t1 | AT2G16460 | 82.857 | 70 | 12 | 0 | 1 | 70 | 102 | 171 | 6.23e-37 | 124 |
Find 22 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACTTTGCAGCTTCTAAC+TGG | 0.256276 | 3.4:+99777648 | None:intergenic |
| ATTTAATCACAGACGCATTC+AGG | 0.308541 | 3.4:-99777826 | MS.gene063128:intron |
| ATCAAGTTTGTTTGTCAGAT+TGG | 0.379537 | 3.4:+99777773 | None:intergenic |
| GGCGAGACCCACTGCAGATA+TGG | 0.381238 | 3.4:+99777592 | None:intergenic |
| ATCTGAAGTCAAAACTTCTC+AGG | 0.465665 | 3.4:-99779639 | MS.gene063128:intron |
| AAGTTTGTTTGTCAGATTGG+TGG | 0.471335 | 3.4:+99777776 | None:intergenic |
| CACTGCAGATATGGAGATAA+GGG | 0.479719 | 3.4:+99777601 | None:intergenic |
| GAGATTGACAAAGTCACTGC+TGG | 0.485809 | 3.4:-99777984 | MS.gene063128:CDS |
| CCACTGCAGATATGGAGATA+AGG | 0.487152 | 3.4:+99777600 | None:intergenic |
| TGGACTTGAATCTTGAAAGA+AGG | 0.491978 | 3.4:-99777953 | MS.gene063128:intron |
| TCTGACAAACAAACTTGATC+GGG | 0.498087 | 3.4:-99777769 | MS.gene063128:intron |
| AGTCACTGCTGGGCAACGAT+TGG | 0.500665 | 3.4:-99777973 | MS.gene063128:CDS |
| ATCTGACAAACAAACTTGAT+CGG | 0.523172 | 3.4:-99777770 | MS.gene063128:CDS |
| CTATAATATGATGCGGATCA+CGG | 0.523976 | 3.4:+99777571 | None:intergenic |
| ATACTTTGCAGCTTCTAACT+GGG | 0.540140 | 3.4:+99777649 | None:intergenic |
| CCTTATCTCCATATCTGCAG+TGG | 0.542460 | 3.4:-99777600 | MS.gene063128:CDS |
| CTTATCTCCATATCTGCAGT+GGG | 0.571660 | 3.4:-99777599 | MS.gene063128:CDS |
| ATAAGATGAGGACTGAATTG+AGG | 0.579482 | 3.4:-99778126 | MS.gene063128:intron |
| GATGTGATCAAATACTGCAT+AGG | 0.606023 | 3.4:-99777626 | MS.gene063128:CDS |
| AGATTGACAAAGTCACTGCT+GGG | 0.625895 | 3.4:-99777983 | MS.gene063128:CDS |
| GTAATGACATAGATAAGATG+AGG | 0.649950 | 3.4:-99778138 | MS.gene063128:CDS |
| TGGGAGACTATAATATGATG+CGG | 0.668275 | 3.4:+99777564 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTTATAATAAGAATAT+AGG | - | chr3.4:99777933-99777952 | MS.gene063128:intron | 10.0% |
| !! | ATAAATAAAGATGCAATATT+TGG | - | chr3.4:99778816-99778835 | MS.gene063128:intron | 15.0% |
| !! | ATAGTTTATTGAAAGTTTAT+GGG | - | chr3.4:99778290-99778309 | MS.gene063128:intron | 15.0% |
| !!! | AAATTTATTGGTCTTTTAAA+AGG | + | chr3.4:99777888-99777907 | None:intergenic | 15.0% |
| !!! | AATTTATTGGTCTTTTAAAA+GGG | + | chr3.4:99777887-99777906 | None:intergenic | 15.0% |
| !!! | CAGTTATGTTATTTATTTAT+AGG | - | chr3.4:99778230-99778249 | MS.gene063128:intron | 15.0% |
| !!! | TATATATTTTGTTATTGAAG+TGG | - | chr3.4:99779527-99779546 | MS.gene063128:intron | 15.0% |
| !! | AAGATATCTAATTCTTAGAA+GGG | - | chr3.4:99778324-99778343 | MS.gene063128:intron | 20.0% |
| !! | ATACAATATAGTACAATCTT+AGG | + | chr3.4:99779219-99779238 | None:intergenic | 20.0% |
| !! | GATAGTTTATTGAAAGTTTA+TGG | - | chr3.4:99778289-99778308 | MS.gene063128:intron | 20.0% |
| !! | TAAAGATAAGTCCTAAAATA+TGG | - | chr3.4:99777792-99777811 | MS.gene063128:CDS | 20.0% |
| !! | TACAATATAGTACAATCTTA+GGG | + | chr3.4:99779218-99779237 | None:intergenic | 20.0% |
| !! | TATTATATATGAGTAAACAC+TGG | + | chr3.4:99778477-99778496 | None:intergenic | 20.0% |
| !! | TTAGATGCAATAAGAAATTA+GGG | - | chr3.4:99778655-99778674 | MS.gene063128:intron | 20.0% |
| !!! | AATGTGCAAAATATCTTTTT+AGG | - | chr3.4:99777751-99777770 | MS.gene063128:intron | 20.0% |
| !!! | CAATTTTTTCACCATATTTT+AGG | + | chr3.4:99777806-99777825 | None:intergenic | 20.0% |
| !!! | TAGATGTATTTTACTAAAAG+AGG | - | chr3.4:99778626-99778645 | MS.gene063128:intron | 20.0% |
| !!! | TGCATCTTTATTTATAAATC+CGG | + | chr3.4:99778811-99778830 | None:intergenic | 20.0% |
| ! | AAAAATGCAACAAATGCTTA+TGG | + | chr3.4:99777710-99777729 | None:intergenic | 25.0% |
| ! | AAACCAAATTTCCATACAAT+TGG | - | chr3.4:99777642-99777661 | MS.gene063128:CDS | 25.0% |
| ! | AACCAAATTTCCATACAATT+GGG | - | chr3.4:99777643-99777662 | MS.gene063128:CDS | 25.0% |
| ! | AATAAATGCGATGATAACTT+AGG | + | chr3.4:99779402-99779421 | None:intergenic | 25.0% |
| ! | AATGAATAGAGAAAAGAAAG+GGG | - | chr3.4:99778253-99778272 | MS.gene063128:intron | 25.0% |
| ! | ACACAAATTGAAATAGGAAT+AGG | + | chr3.4:99778399-99778418 | None:intergenic | 25.0% |
| ! | AGTCATGATTCTAATTATGT+AGG | - | chr3.4:99778157-99778176 | MS.gene063128:CDS | 25.0% |
| ! | ATAAATGCGATGATAACTTA+GGG | + | chr3.4:99779401-99779420 | None:intergenic | 25.0% |
| ! | ATAAGACGTTGAAAAAGAAA+TGG | - | chr3.4:99778130-99778149 | MS.gene063128:CDS | 25.0% |
| ! | ATATAGATACCAGTTTCTAT+CGG | - | chr3.4:99778525-99778544 | MS.gene063128:intron | 25.0% |
| ! | ATGATTCTAATTATGTAGGA+AGG | - | chr3.4:99778161-99778180 | MS.gene063128:CDS | 25.0% |
| ! | CAAGATATCTAATTCTTAGA+AGG | - | chr3.4:99778323-99778342 | MS.gene063128:intron | 25.0% |
| ! | CTTAGATGCAATAAGAAATT+AGG | - | chr3.4:99778654-99778673 | MS.gene063128:intron | 25.0% |
| ! | GAATGAATAGAGAAAAGAAA+GGG | - | chr3.4:99778252-99778271 | MS.gene063128:intron | 25.0% |
| ! | TAAGACGTTGAAAAAGAAAT+GGG | - | chr3.4:99778131-99778150 | MS.gene063128:CDS | 25.0% |
| ! | TAATTGAAAAACTGCAAACA+TGG | - | chr3.4:99779327-99779346 | MS.gene063128:intron | 25.0% |
| ! | TAGATGCAATAAGAAATTAG+GGG | - | chr3.4:99778656-99778675 | MS.gene063128:intron | 25.0% |
| ! | TATAAAATCTCTGAATGTTC+AGG | + | chr3.4:99777923-99777942 | None:intergenic | 25.0% |
| ! | TATTGTATCTATCAAACAGA+AGG | - | chr3.4:99777988-99778007 | MS.gene063128:CDS | 25.0% |
| ! | TATTTGAGTATAAACTTCCA+AGG | + | chr3.4:99779163-99779182 | None:intergenic | 25.0% |
| ! | TGTAACTTTATTCCTAAACA+AGG | - | chr3.4:99778594-99778613 | MS.gene063128:intron | 25.0% |
| !! | ATCTTTATTTATAAATCCGG+GGG | + | chr3.4:99778808-99778827 | None:intergenic | 25.0% |
| !! | CATCTTTATTTATAAATCCG+GGG | + | chr3.4:99778809-99778828 | None:intergenic | 25.0% |
| !! | CTTCTAAGAATTAGATATCT+TGG | + | chr3.4:99778325-99778344 | None:intergenic | 25.0% |
| !! | GCATCTTTATTTATAAATCC+GGG | + | chr3.4:99778810-99778829 | None:intergenic | 25.0% |
| !!! | AAACATGGTTCTATTTTTTG+TGG | - | chr3.4:99779342-99779361 | MS.gene063128:intron | 25.0% |
| !!! | CTAAATTTAATGCCTTGTTT+AGG | + | chr3.4:99778609-99778628 | None:intergenic | 25.0% |
| !!! | GAGTGATGATGATATATTTT+TGG | - | chr3.4:99777955-99777974 | MS.gene063128:CDS | 25.0% |
| !!! | GCAAAATATCTTTTTAGGTT+AGG | - | chr3.4:99777756-99777775 | MS.gene063128:intron | 25.0% |
| !!! | TTGAAGTCTATATTGCTTTT+AGG | - | chr3.4:99779567-99779586 | MS.gene063128:intron | 25.0% |
| !!! | TTTGAAGTCTTTTGTGTATT+CGG | - | chr3.4:99778862-99778881 | MS.gene063128:intron | 25.0% |
| ACTGAGACACAAATTGAAAT+AGG | + | chr3.4:99778405-99778424 | None:intergenic | 30.0% | |
| ATAACATAGAAAAAACCCAC+AGG | + | chr3.4:99778964-99778983 | None:intergenic | 30.0% | |
| ATCTGACAAACAAACTTGAT+CGG | - | chr3.4:99779487-99779506 | MS.gene063128:intron | 30.0% | |
| ATGAATAGAGAAAAGAAAGG+GGG | - | chr3.4:99778254-99778273 | MS.gene063128:intron | 30.0% | |
| CTATATGACATCTCAAAACT+CGG | + | chr3.4:99778035-99778054 | None:intergenic | 30.0% | |
| GGAATGAATAGAGAAAAGAA+AGG | - | chr3.4:99778251-99778270 | MS.gene063128:intron | 30.0% | |
| GTAATGACATAGATAAGATG+AGG | - | chr3.4:99779119-99779138 | MS.gene063128:intron | 30.0% | |
| TACAGATAAAGCGTGTAATA+GGG | + | chr3.4:99778559-99778578 | None:intergenic | 30.0% | |
| TTAGGAATAAAGTTACAGTG+AGG | + | chr3.4:99778591-99778610 | None:intergenic | 30.0% | |
| ! | AAAATCAAATTTGCTTCAGG+TGG | + | chr3.4:99779191-99779210 | None:intergenic | 30.0% |
| ! | AAGATGCAATATTTGGAGTT+TGG | - | chr3.4:99778823-99778842 | MS.gene063128:intron | 30.0% |
| ! | ATCAAGTTTGTTTGTCAGAT+TGG | + | chr3.4:99779487-99779506 | None:intergenic | 30.0% |
| ! | ATTTATTGATTGTCTGTGAC+AGG | - | chr3.4:99779247-99779266 | MS.gene063128:intron | 30.0% |
| ! | CAATATTTGGAGTTTGGATT+TGG | - | chr3.4:99778829-99778848 | MS.gene063128:intron | 30.0% |
| ! | GTGAAAATCAAATTTGCTTC+AGG | + | chr3.4:99779194-99779213 | None:intergenic | 30.0% |
| !! | TGTTATACTTTTGAGAACAC+AGG | - | chr3.4:99778978-99778997 | MS.gene063128:intron | 30.0% |
| AGAAATTAGGGGAAAGTGAT+TGG | - | chr3.4:99778667-99778686 | MS.gene063128:intron | 35.0% | |
| ATAAGATGAGGACTGAATTG+AGG | - | chr3.4:99779131-99779150 | MS.gene063128:intron | 35.0% | |
| ATACTTTGCAGCTTCTAACT+GGG | + | chr3.4:99779611-99779630 | None:intergenic | 35.0% | |
| ATTAATCAAGCATTCTCGTG+AGG | - | chr3.4:99778088-99778107 | MS.gene063128:intron | 35.0% | |
| ATTTAATCACAGACGCATTC+AGG | - | chr3.4:99779431-99779450 | MS.gene063128:intron | 35.0% | |
| CTACAGATAAAGCGTGTAAT+AGG | + | chr3.4:99778560-99778579 | None:intergenic | 35.0% | |
| CTATAATATGATGCGGATCA+CGG | + | chr3.4:99779689-99779708 | None:intergenic | 35.0% | |
| CTTAGGGTTAAACCATAAAG+AGG | + | chr3.4:99779385-99779404 | None:intergenic | 35.0% | |
| GACCCAATTGTATGGAAATT+TGG | + | chr3.4:99777648-99777667 | None:intergenic | 35.0% | |
| GATAGCTAGGCATATTCTAT+AGG | - | chr3.4:99778923-99778942 | MS.gene063128:intron | 35.0% | |
| GATGTGATCAAATACTGCAT+AGG | - | chr3.4:99779631-99779650 | MS.gene063128:intron | 35.0% | |
| GCATGTTAGGCTTCTTATTA+CGG | - | chr3.4:99778185-99778204 | MS.gene063128:intron | 35.0% | |
| GGATAGTCTACAGTTACAAA+TGG | + | chr3.4:99778378-99778397 | None:intergenic | 35.0% | |
| TCAAACAGAAGGTTTAGCAT+CGG | - | chr3.4:99777999-99778018 | MS.gene063128:intron | 35.0% | |
| TCAATTTGTGTCTCAGTTTC+AGG | - | chr3.4:99778408-99778427 | MS.gene063128:intron | 35.0% | |
| TCTGACAAACAAACTTGATC+GGG | - | chr3.4:99779488-99779507 | MS.gene063128:intron | 35.0% | |
| TGAAAGTTTATGGGAATGAG+AGG | - | chr3.4:99778299-99778318 | MS.gene063128:intron | 35.0% | |
| TGGACTTGAATCTTGAAAGA+AGG | - | chr3.4:99779304-99779323 | MS.gene063128:intron | 35.0% | |
| TTACACGCTTTATCTGTAGA+CGG | - | chr3.4:99778561-99778580 | MS.gene063128:intron | 35.0% | |
| TTGATGCAGTAACCTCTTTA+TGG | - | chr3.4:99779370-99779389 | MS.gene063128:intron | 35.0% | |
| ! | AAGTTTGTTTGTCAGATTGG+TGG | + | chr3.4:99779484-99779503 | None:intergenic | 35.0% |
| ! | ATCTGAAGTCAAAACTTCTC+AGG | - | chr3.4:99777618-99777637 | MS.gene063128:CDS | 35.0% |
| !! | TAAGTCGTCCTTTTGATGAT+TGG | - | chr3.4:99779045-99779064 | MS.gene063128:intron | 35.0% |
| AAACAGAAGGTTTAGCATCG+GGG | - | chr3.4:99778001-99778020 | MS.gene063128:intron | 40.0% | |
| ACTGGATTCTGTTTCAACAG+AGG | + | chr3.4:99778459-99778478 | None:intergenic | 40.0% | |
| AGACTCTCGAATTTCTTGGA+AGG | - | chr3.4:99778349-99778368 | MS.gene063128:intron | 40.0% | |
| AGATTGACAAAGTCACTGCT+GGG | - | chr3.4:99779274-99779293 | MS.gene063128:intron | 40.0% | |
| AGCTATCTGTTGAGATGTTG+TGG | + | chr3.4:99778910-99778929 | None:intergenic | 40.0% | |
| AGGACGACTTAAACATCTGA+TGG | + | chr3.4:99779036-99779055 | None:intergenic | 40.0% | |
| ATTCTGTTTCAACAGAGGGA+TGG | + | chr3.4:99778454-99778473 | None:intergenic | 40.0% | |
| CAAACAGAAGGTTTAGCATC+GGG | - | chr3.4:99778000-99778019 | MS.gene063128:intron | 40.0% | |
| CAAATCTTCAACTGCTTCTG+CGG | - | chr3.4:99778744-99778763 | MS.gene063128:intron | 40.0% | |
| CAACATCTCAACAGATAGCT+AGG | - | chr3.4:99778910-99778929 | MS.gene063128:intron | 40.0% | |
| CACTGCAGATATGGAGATAA+GGG | + | chr3.4:99779659-99779678 | None:intergenic | 40.0% | |
| CATACTATGCACTTTCCTGT+GGG | - | chr3.4:99778946-99778965 | MS.gene063128:intron | 40.0% | |
| CATACTTTGCAGCTTCTAAC+TGG | + | chr3.4:99779612-99779631 | None:intergenic | 40.0% | |
| CTGCATCACCAATCATCAAA+AGG | + | chr3.4:99779056-99779075 | None:intergenic | 40.0% | |
| CTGGATTCTGTTTCAACAGA+GGG | + | chr3.4:99778458-99778477 | None:intergenic | 40.0% | |
| CTTATCTCCATATCTGCAGT+GGG | - | chr3.4:99779658-99779677 | MS.gene063128:CDS | 40.0% | |
| CTTGTTTCAAATATCACCCC+CGG | - | chr3.4:99778789-99778808 | MS.gene063128:intron | 40.0% | |
| GACTCTCGAATTTCTTGGAA+GGG | - | chr3.4:99778350-99778369 | MS.gene063128:intron | 40.0% | |
| ! | TAGTTTGCCAGTAATTCCTG+TGG | - | chr3.4:99777832-99777851 | MS.gene063128:intron | 40.0% |
| ! | TATGTAGGAAGGTGCATGTT+AGG | - | chr3.4:99778172-99778191 | MS.gene063128:CDS | 40.0% |
| !! | AGAAAGGGGGAAGTGTTTAT+TGG | - | chr3.4:99778267-99778286 | MS.gene063128:intron | 40.0% |
| !! | AGCTTGTTGACCCAATTGTA+TGG | + | chr3.4:99777656-99777675 | None:intergenic | 40.0% |
| !! | TACTTTTGAGAACACAGGAC+AGG | - | chr3.4:99778983-99779002 | MS.gene063128:intron | 40.0% |
| !!! | AAGTGATTGGTTTTTGGCTG+AGG | - | chr3.4:99778680-99778699 | MS.gene063128:intron | 40.0% |
| !!! | AGGGGAAAGTGATTGGTTTT+TGG | - | chr3.4:99778674-99778693 | MS.gene063128:intron | 40.0% |
| !!! | CTTTTGATGATTGGTGATGC+AGG | - | chr3.4:99779054-99779073 | MS.gene063128:intron | 40.0% |
| CCACTGCAGATATGGAGATA+AGG | + | chr3.4:99779660-99779679 | None:intergenic | 45.0% | |
| CCTTATCTCCATATCTGCAG+TGG | - | chr3.4:99779657-99779676 | MS.gene063128:CDS | 45.0% | |
| CGCAGAAGCAGTTGAAGATT+TGG | + | chr3.4:99778746-99778765 | None:intergenic | 45.0% | |
| CTGAATTGAGGTCTGTACCT+TGG | - | chr3.4:99779143-99779162 | MS.gene063128:intron | 45.0% | |
| GAAGTGGAGAACGTTCAGTT+TGG | - | chr3.4:99779543-99779562 | MS.gene063128:intron | 45.0% | |
| GAGATTGACAAAGTCACTGC+TGG | - | chr3.4:99779273-99779292 | MS.gene063128:intron | 45.0% | |
| GCATACTATGCACTTTCCTG+TGG | - | chr3.4:99778945-99778964 | MS.gene063128:intron | 45.0% | |
| GGAGAGACTCTCGAATTTCT+TGG | - | chr3.4:99778345-99778364 | MS.gene063128:intron | 45.0% | |
| GTGTGAACCACAGGAATTAC+TGG | + | chr3.4:99777842-99777861 | None:intergenic | 45.0% | |
| !! | AAAAGTAAATTAAAATTTAT+TGG | + | chr3.4:99777900-99777919 | None:intergenic | 5.0% |
| !! | TTAAATATTAAAAAAAAGAA+AGG | + | chr3.4:99777682-99777701 | None:intergenic | 5.0% |
| ACCAGTTTCTATCGGTGCAC+TGG | - | chr3.4:99778533-99778552 | MS.gene063128:intron | 50.0% | |
| CCTGTGGTTCACACTCTTTC+TGG | - | chr3.4:99777848-99777867 | MS.gene063128:intron | 50.0% | |
| TCTTCAACTGCTTCTGCGGA+TGG | - | chr3.4:99778748-99778767 | MS.gene063128:intron | 50.0% | |
| ! | CCAGAAAGAGTGTGAACCAC+AGG | + | chr3.4:99777851-99777870 | None:intergenic | 50.0% |
| AGTCACTGCTGGGCAACGAT+TGG | - | chr3.4:99779284-99779303 | MS.gene063128:intron | 55.0% | |
| ! | GAAGGTTTAGCATCGGGGAC+AGG | - | chr3.4:99778006-99778025 | MS.gene063128:intron | 55.0% |
| ! | GCCAGTGCACCGATAGAAAC+TGG | + | chr3.4:99778537-99778556 | None:intergenic | 55.0% |
| GGCGAGACCCACTGCAGATA+TGG | + | chr3.4:99779668-99779687 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 99777571 | 99779708 | 99777571 | ID=MS.gene063128 |
| chr3.4 | mRNA | 99777571 | 99779708 | 99777571 | ID=MS.gene063128.t1;Parent=MS.gene063128 |
| chr3.4 | exon | 99779640 | 99779708 | 99779640 | ID=MS.gene063128.t1.exon1;Parent=MS.gene063128.t1 |
| chr3.4 | CDS | 99779640 | 99779708 | 99779640 | ID=cds.MS.gene063128.t1;Parent=MS.gene063128.t1 |
| chr3.4 | exon | 99778127 | 99778203 | 99778127 | ID=MS.gene063128.t1.exon2;Parent=MS.gene063128.t1 |
| chr3.4 | CDS | 99778127 | 99778203 | 99778127 | ID=cds.MS.gene063128.t1;Parent=MS.gene063128.t1 |
| chr3.4 | exon | 99777954 | 99778010 | 99777954 | ID=MS.gene063128.t1.exon3;Parent=MS.gene063128.t1 |
| chr3.4 | CDS | 99777954 | 99778010 | 99777954 | ID=cds.MS.gene063128.t1;Parent=MS.gene063128.t1 |
| chr3.4 | exon | 99777770 | 99777836 | 99777770 | ID=MS.gene063128.t1.exon4;Parent=MS.gene063128.t1 |
| chr3.4 | CDS | 99777770 | 99777836 | 99777770 | ID=cds.MS.gene063128.t1;Parent=MS.gene063128.t1 |
| chr3.4 | exon | 99777571 | 99777690 | 99777571 | ID=MS.gene063128.t1.exon5;Parent=MS.gene063128.t1 |
| chr3.4 | CDS | 99777571 | 99777690 | 99777571 | ID=cds.MS.gene063128.t1;Parent=MS.gene063128.t1 |
| Gene Sequence |
| Protein sequence |
