AlfalfaGEDB | MS.gene063750

M. sativa cultivar XinJiangDaYe / MS.gene063750

KEGG: -
GO: GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008252 GO:0008253 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009262 GO:0009264 GO:0009987 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042578 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0046434 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063750.t1	XP_003609926.2	99.5	197	1	0	1	197	138	334	2.00E-110	408.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063750.t1	G7JR56	99.5	197	1	0	1	197	138	334	1.5e-110	408.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene063750	0.813638	2.31E-51	-1.69E-46
MS.gene049378	MS.gene063750	0.873631	1.27E-67	-1.69E-46
MS.gene049669	MS.gene063750	0.846751	1.78E-59	-1.69E-46
MS.gene050105	MS.gene063750	0.809187	2.14E-50	-1.69E-46
MS.gene050226	MS.gene063750	0.809609	1.74E-50	-1.69E-46
MS.gene050227	MS.gene063750	0.838147	3.42E-57	-1.69E-46
MS.gene050228	MS.gene063750	0.833972	3.92E-56	-1.69E-46
MS.gene050303	MS.gene063750	0.812138	4.93E-51	-1.69E-46
MS.gene050442	MS.gene063750	0.809068	2.27E-50	-1.69E-46
MS.gene050623	MS.gene063750	-0.818136	2.29E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 38 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGACACCGTATTTCAAGTC+AGG	0.400340	8.2:-8916920	MS.gene063750:CDS
AATCATACGTTACAATGGAT+AGG	0.596490	8.2:+8916840	None:intergenic
ACCAAAATCATACGTTACAA+TGG	0.539123	8.2:+8916835	None:intergenic
ACCAACTCATTCTTGGACCA+AGG	0.564088	8.2:+8916297	None:intergenic
AGACACCGTATTTCAAGTCA+GGG	0.563775	8.2:-8916919	MS.gene063750:CDS
AGTATTAGGAAATTTCGTGT+CGG	0.674898	8.2:-8918098	MS.gene063750:CDS
AGTTAAGAACTGGACAGAAG+TGG	0.584067	8.2:-8916250	MS.gene063750:CDS
ATATCCCATCAAGTGCAAAA+TGG	0.416702	8.2:+8916652	None:intergenic
ATTATCATCAATAAGAACCT+TGG	0.545700	8.2:+8916389	None:intergenic
ATTATGAAAACTCATATCCT+TGG	0.454107	8.2:-8916314	MS.gene063750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATTAGAAAGGATTTAG+AGG	-	chr8.2:8916566-8916585	MS.gene063750:intron	30.0%
AATACATAAGACTGGAGAAT+AGG	+	chr8.2:8916431-8916450	None:intergenic	30.0%
AATCATACGTTACAATGGAT+AGG	+	chr8.2:8917465-8917484	None:intergenic	30.0%
ACCAAAATCATACGTTACAA+TGG	+	chr8.2:8917470-8917489	None:intergenic	30.0%
ATACATAAGACTGGAGAATA+GGG	+	chr8.2:8916430-8916449	None:intergenic	30.0%
ATAGAGAAAAACAGATGAAG+AGG	+	chr8.2:8917713-8917732	None:intergenic	30.0%
ATCATAATTCAGTTCCTTGT+TGG	-	chr8.2:8916840-8916859	MS.gene063750:intron	30.0%
CATTGTGTACAGAAAATTGT+TGG	-	chr8.2:8917032-8917051	MS.gene063750:intron	30.0%
CCCTATAAATCTATGTTCAA+AGG	-	chr8.2:8917145-8917164	MS.gene063750:intron	30.0%
CCCTTTGAACATAGATTTAT+AGG	+	chr8.2:8917149-8917168	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	8916206	8918118	8916206	ID=MS.gene063750
chr8.2	mRNA	8916206	8918118	8916206	ID=MS.gene063750.t1;Parent=MS.gene063750
chr8.2	exon	8918021	8918118	8918021	ID=MS.gene063750.t1.exon1;Parent=MS.gene063750.t1
chr8.2	CDS	8918021	8918118	8918021	ID=cds.MS.gene063750.t1;Parent=MS.gene063750.t1
chr8.2	exon	8917330	8917354	8917330	ID=MS.gene063750.t1.exon2;Parent=MS.gene063750.t1
chr8.2	CDS	8917330	8917354	8917330	ID=cds.MS.gene063750.t1;Parent=MS.gene063750.t1
chr8.2	exon	8916848	8916968	8916848	ID=MS.gene063750.t1.exon3;Parent=MS.gene063750.t1
chr8.2	CDS	8916848	8916968	8916848	ID=cds.MS.gene063750.t1;Parent=MS.gene063750.t1
chr8.2	exon	8916627	8916761	8916627	ID=MS.gene063750.t1.exon4;Parent=MS.gene063750.t1
chr8.2	CDS	8916627	8916761	8916627	ID=cds.MS.gene063750.t1;Parent=MS.gene063750.t1
chr8.2	exon	8916206	8916422	8916206	ID=MS.gene063750.t1.exon5;Parent=MS.gene063750.t1
chr8.2	CDS	8916206	8916422	8916206	ID=cds.MS.gene063750.t1;Parent=MS.gene063750.t1

Gene Sequence

>MS.gene063750

TATTAGGAAATTTCGTGTCGGCTCTCAACAAGTACATTGCAGATCAATATTCATCAAATTATTCAGTTTCTGAATATCATGTGTACGAGTTCTTTAAGGTATCTTTTGTTGGCTGCTTTTGCAATTTCGTGTTTTCATGATAAGTGATTAAGTTTTGCCAATATTAAACAAATGTCATCGGAACAGGAACTTTAATGTTCTTTCATAGACTCATATTTTCCCCCTATTCTCCAGTCTTATGTATTAATATAGACTGTAGCATTAGAAAGCTTTGCCCTCTATTCAAATTAGGCTTATTTGTGCTGATTTAATTTTCTTTCGTGATAGAGGTAGAGGAAGACCTAGGAAAACTATTAGAGAAACCATTAGAAAGGATTTAGAGGTCAATGAGTTGGATCCAAATTTGGTTTATGACAGAACACTATGGCGTAATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGTTTGTTGTTGTTTTGTTGGTCAATGGTGCTTCATAAAAATTCCTGACACGTGAATTTTTTAGTCCATATCTGTTGAACATCGATCGCGGACCCAAATTCTGTCTAAATCTTTCCTCTTGCTGAAGAGAACTACTTTTTCTATGAATGGGATTCTGTTTAAATCATAATTCAGTTCCTTGTTGGCTTTAGGTGTATCTGGCTTTTGCACTAGTTGTAGTCCATTGCTTTTGTTGTAAATTTGTGCATATGCTTGAATTTGGAACCTGATGCACCCTTAATTTCTGTTACAGATATGGAACTGTTCACGTGATGAAGGTAATTGTCATTCCTCTTTAGAACAATTTTGCTATTCCATTGTGTACAGAAAATTGTTGGATATTAGAATTTTCCTTGTTTGATTTGTTCAAGTTCATTGATTGAAGTCTCTCTCTTTGAAATCTGGATGATCTTTATTGAGATCATATTCCCTATAAATCTATGTTCAAAGGGTCGAATTTGAAAGTTTTGTTTTCACGATTGAGGCAAGCCCAATTCTCTAATGAATTTTTCCTAATTCTTGTTCAAAAGGGTCAAATAGTACAATAATTTTATCAAGATTTTTGTGTAGGAATTTTTCACTAATTTTATTCTTTCGGATGACTAATGGACTGGTTGGAAATTAATATCTTTTTTGCAGCTGATATTCGTGTTCATGAGTTTTTTAAGACACCGTATTTCAAGTCAGGGATTCACCCTCTCCCAGGTGCTCAGACGGCGATTCAAAAGTTATCAAGATTTTTTAACCTATCCATTGTAACGTATGATTTTGGTATTGGACTTTCATTAACCTTAAGAGGAATCTTGTCGGGATCAACTAACCGAATCACATTTATTATATGTTCAGGTCTCGGCAGAATGTAATTAAGGATCACACTATTGAATGGATAGAGAAGAATTTCCCAGGACTTTTCCATGAGATTCACTTTGGTAACCATTTTGCACTTGATGGGATATCAAGACCAAAATCAGAGATTTGTAGGTGCGCCTTGATCCTCTTCATCTGTTTTTCTCTATGATATGACTTGATTTTCTTTGGAAATGTTCAAGTGTTCATACCTCCTTCCCTACTGTTTAGATTCACATCACTTCCTTTTCCTACTGTTTTTCTTCCTAGAACTCTTAATCCGTTCAAGTACTATTTTTTATCATTTAAAGATGCAAACTTGCTGTTTCTCATTAACAGGACTTTAAATGCCAAGGTTCTTATTGATGATAATCCGCGGTATGCAATAGAGTGTGCTGAAGTTGGAATCAAAGTCCTACTTTTTGATTATGAAAACTCATATCCTTGGTCCAAGAATGAGTTGGTTGATGAGCACCCTTTGGTGACCAAAGTTAAGAACTGGACAGAAGTGGAACAACAATTGATGTCATTGATAGCTTCACAGTCTAAATCTTGA

Protein sequence

>MS.gene063750.t1

YUEISCRLSTSTLQINIHQIIQFLNIMCTSSLRYGTVHVMKLIFVFMSFLRHRISSQGFTLSQVLRRRFKSYQDFLTYPLURLGRMULRITLLNGURRISQDFSMRFTLVTILHLMGYQDQNQRFVGLUMPRFLLMIIRGMQUSVLKLESKSYFLIMKTHILGPRMSWLMSTLWUPKLRTGQKWNNNUCHUULHSLNL