Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064520.t1 | XP_003616291.1 | 93.3 | 988 | 64 | 1 | 1 | 988 | 1 | 986 | 0.00E+00 | 1640.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064520.t1 | Q0WNW4 | 31.7 | 971 | 350 | 25 | 1 | 966 | 1 | 663 | 4.0e-62 | 241.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064520.t1 | G7K1Q1 | 93.3 | 988 | 64 | 1 | 1 | 988 | 1 | 986 | 0.0e+00 | 1640.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene064520 | 0.831353 | 1.75E-55 | -1.69E-46 |
| MS.gene049350 | MS.gene064520 | 0.813511 | 2.47E-51 | -1.69E-46 |
| MS.gene049418 | MS.gene064520 | 0.823657 | 1.23E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene064520 | 0.828594 | 8.24E-55 | -1.69E-46 |
| MS.gene049807 | MS.gene064520 | 0.804036 | 2.62E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene064520 | 0.802034 | 6.79E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene064520 | 0.801536 | 8.60E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene064520 | 0.807806 | 4.22E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene064520 | 0.812301 | 4.54E-51 | -1.69E-46 |
| MS.gene050657 | MS.gene064520 | 0.81056 | 1.08E-50 | -1.69E-46 |
| MS.gene051018 | MS.gene064520 | 0.834843 | 2.37E-56 | -1.69E-46 |
| MS.gene051021 | MS.gene064520 | 0.825419 | 4.74E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene064520 | 0.83005 | 3.65E-55 | -1.69E-46 |
| MS.gene051388 | MS.gene064520 | 0.847368 | 1.21E-59 | -1.69E-46 |
| MS.gene05150 | MS.gene064520 | 0.800046 | 1.73E-48 | -1.69E-46 |
| MS.gene05157 | MS.gene064520 | 0.828762 | 7.51E-55 | -1.69E-46 |
| MS.gene051664 | MS.gene064520 | 0.81176 | 5.96E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene064520 | 0.828079 | 1.10E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene064520 | 0.836258 | 1.04E-56 | -1.69E-46 |
| MS.gene051720 | MS.gene064520 | 0.856152 | 3.90E-62 | -1.69E-46 |
| MS.gene051744 | MS.gene064520 | 0.822522 | 2.26E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene064520 | 0.828418 | 9.09E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene064520 | 0.810836 | 9.45E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene064520 | 0.848249 | 6.91E-60 | -1.69E-46 |
| MS.gene053122 | MS.gene064520 | 0.809903 | 1.50E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene064520 | 0.879023 | 1.75E-69 | -1.69E-46 |
| MS.gene053174 | MS.gene064520 | 0.803853 | 2.86E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene064520 | 0.81986 | 9.30E-53 | -1.69E-46 |
| MS.gene053536 | MS.gene064520 | 0.815366 | 9.59E-52 | -1.69E-46 |
| MS.gene053538 | MS.gene064520 | 0.810264 | 1.26E-50 | -1.69E-46 |
| MS.gene054550 | MS.gene064520 | 0.807849 | 4.13E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene064520 | 0.888057 | 8.27E-73 | -1.69E-46 |
| MS.gene055083 | MS.gene064520 | 0.807535 | 4.82E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene064520 | 0.870063 | 1.94E-66 | -1.69E-46 |
| MS.gene055466 | MS.gene064520 | 0.864581 | 1.10E-64 | -1.69E-46 |
| MS.gene055468 | MS.gene064520 | 0.856385 | 3.34E-62 | -1.69E-46 |
| MS.gene055469 | MS.gene064520 | 0.863217 | 2.91E-64 | -1.69E-46 |
| MS.gene055513 | MS.gene064520 | 0.822742 | 2.01E-53 | -1.69E-46 |
| MS.gene055537 | MS.gene064520 | 0.885724 | 6.35E-72 | -1.69E-46 |
| MS.gene055580 | MS.gene064520 | -0.869329 | 3.36E-66 | -1.69E-46 |
| MS.gene055764 | MS.gene064520 | 0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene055890 | MS.gene064520 | 0.802599 | 5.20E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene064520 | 0.818018 | 2.44E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene064520 | -0.85117 | 1.06E-60 | -1.69E-46 |
| MS.gene056050 | MS.gene064520 | 0.804671 | 1.93E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene064520 | 0.841936 | 3.51E-58 | -1.69E-46 |
| MS.gene056507 | MS.gene064520 | 0.815974 | 7.02E-52 | -1.69E-46 |
| MS.gene057082 | MS.gene064520 | 0.805097 | 1.57E-49 | -1.69E-46 |
| MS.gene057294 | MS.gene064520 | 0.81526 | 1.01E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene064520 | 0.81052 | 1.11E-50 | -1.69E-46 |
| MS.gene058087 | MS.gene064520 | 0.829146 | 6.06E-55 | -1.69E-46 |
| MS.gene058339 | MS.gene064520 | 0.811237 | 7.74E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene064520 | 0.804419 | 2.18E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene064520 | 0.801314 | 9.55E-49 | -1.69E-46 |
| MS.gene058668 | MS.gene064520 | 0.856347 | 3.42E-62 | -1.69E-46 |
| MS.gene05894 | MS.gene064520 | 0.81044 | 1.15E-50 | -1.69E-46 |
| MS.gene059424 | MS.gene064520 | 0.803704 | 3.07E-49 | -1.69E-46 |
| MS.gene059426 | MS.gene064520 | 0.834685 | 2.60E-56 | -1.69E-46 |
| MS.gene059570 | MS.gene064520 | 0.814029 | 1.90E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene064520 | 0.817661 | 2.94E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene064520 | 0.838306 | 3.11E-57 | -1.69E-46 |
| MS.gene060637 | MS.gene064520 | 0.802807 | 4.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064520.t1 | MTR_5g078300 | 96.964 | 988 | 28 | 1 | 1 | 988 | 1 | 986 | 0.0 | 1947 |
| MS.gene064520.t1 | MTR_1g070350 | 35.516 | 397 | 220 | 12 | 580 | 967 | 495 | 864 | 1.08e-39 | 159 |
| MS.gene064520.t1 | MTR_1g070350 | 48.387 | 93 | 47 | 1 | 21 | 113 | 24 | 115 | 2.94e-22 | 103 |
| MS.gene064520.t1 | MTR_7g115350 | 34.336 | 399 | 215 | 14 | 580 | 967 | 504 | 866 | 1.88e-34 | 142 |
| MS.gene064520.t1 | MTR_7g115350 | 48.485 | 99 | 50 | 1 | 15 | 113 | 20 | 117 | 2.49e-25 | 113 |
| MS.gene064520.t1 | MTR_0168s0060 | 30.481 | 187 | 111 | 5 | 1 | 169 | 1 | 186 | 1.20e-25 | 112 |
| MS.gene064520.t1 | MTR_0168s0060 | 61.616 | 99 | 38 | 0 | 619 | 717 | 331 | 429 | 6.44e-23 | 104 |
| MS.gene064520.t1 | MTR_4g107310 | 36.667 | 120 | 76 | 0 | 1 | 120 | 1 | 120 | 8.20e-25 | 110 |
| MS.gene064520.t1 | MTR_4g107310 | 48.611 | 144 | 68 | 3 | 574 | 717 | 290 | 427 | 2.72e-16 | 83.6 |
| MS.gene064520.t1 | MTR_4g011540 | 49.485 | 97 | 49 | 0 | 619 | 715 | 286 | 382 | 4.65e-16 | 82.4 |
| MS.gene064520.t1 | MTR_4g011550 | 48.352 | 91 | 47 | 0 | 626 | 716 | 281 | 371 | 8.36e-16 | 82.4 |
| MS.gene064520.t1 | MTR_1g054835 | 28.191 | 376 | 201 | 13 | 622 | 958 | 65 | 410 | 2.37e-14 | 77.4 |
| MS.gene064520.t1 | MTR_4g093150 | 37.037 | 108 | 68 | 0 | 614 | 721 | 68 | 175 | 3.18e-14 | 73.2 |
| MS.gene064520.t1 | MTR_7g107000 | 37.097 | 124 | 75 | 1 | 602 | 725 | 53 | 173 | 3.63e-14 | 76.6 |
| MS.gene064520.t1 | MTR_4g130400 | 40.952 | 105 | 62 | 0 | 619 | 723 | 6 | 110 | 3.24e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064520.t1 | AT5G16720 | 46.212 | 396 | 170 | 7 | 572 | 966 | 310 | 663 | 6.27e-87 | 293 |
| MS.gene064520.t1 | AT5G16720 | 38.214 | 280 | 117 | 10 | 1 | 259 | 1 | 245 | 3.54e-46 | 177 |
| MS.gene064520.t1 | AT1G70750 | 47.453 | 373 | 155 | 11 | 601 | 966 | 400 | 738 | 2.05e-72 | 255 |
| MS.gene064520.t1 | AT1G70750 | 53.509 | 114 | 44 | 2 | 1 | 107 | 1 | 112 | 3.29e-30 | 129 |
| MS.gene064520.t1 | AT1G08800 | 45.763 | 177 | 86 | 5 | 581 | 755 | 858 | 1026 | 5.59e-30 | 129 |
| MS.gene064520.t1 | AT1G08800 | 38.158 | 152 | 81 | 5 | 21 | 165 | 10 | 155 | 4.12e-23 | 107 |
| MS.gene064520.t1 | AT1G08800 | 45.763 | 177 | 86 | 5 | 581 | 755 | 858 | 1026 | 5.59e-30 | 129 |
| MS.gene064520.t1 | AT1G08800 | 38.158 | 152 | 81 | 5 | 21 | 165 | 10 | 155 | 4.12e-23 | 107 |
| MS.gene064520.t1 | AT1G08800 | 45.763 | 177 | 86 | 5 | 581 | 755 | 858 | 1026 | 5.59e-30 | 129 |
| MS.gene064520.t1 | AT1G08800 | 38.158 | 152 | 81 | 5 | 21 | 165 | 10 | 155 | 4.12e-23 | 107 |
| MS.gene064520.t1 | AT1G08800 | 45.763 | 177 | 86 | 5 | 581 | 755 | 858 | 1026 | 5.59e-30 | 129 |
| MS.gene064520.t1 | AT1G08800 | 38.158 | 152 | 81 | 5 | 21 | 165 | 10 | 155 | 4.12e-23 | 107 |
| MS.gene064520.t1 | AT1G74830 | 40.000 | 210 | 118 | 2 | 619 | 828 | 302 | 503 | 2.10e-26 | 115 |
| MS.gene064520.t1 | AT1G74830 | 36.283 | 113 | 72 | 0 | 1 | 113 | 20 | 132 | 6.82e-24 | 107 |
| MS.gene064520.t1 | AT1G18990 | 58.559 | 111 | 44 | 1 | 605 | 715 | 289 | 397 | 1.31e-21 | 100 |
| MS.gene064520.t1 | AT1G18990 | 31.720 | 186 | 97 | 3 | 1 | 156 | 1 | 186 | 6.36e-18 | 89.0 |
| MS.gene064520.t1 | AT2G30690 | 32.099 | 162 | 87 | 7 | 15 | 169 | 13 | 158 | 1.08e-17 | 89.0 |
| MS.gene064520.t1 | AT2G30690 | 32.099 | 162 | 87 | 7 | 15 | 169 | 13 | 158 | 1.08e-17 | 89.0 |
| MS.gene064520.t1 | AT4G13630 | 41.135 | 141 | 69 | 3 | 586 | 722 | 195 | 325 | 1.32e-17 | 88.2 |
| MS.gene064520.t1 | AT4G13630 | 41.135 | 141 | 69 | 3 | 586 | 722 | 195 | 325 | 1.32e-17 | 88.2 |
| MS.gene064520.t1 | AT5G06560 | 40.000 | 100 | 60 | 0 | 622 | 721 | 74 | 173 | 7.01e-16 | 82.4 |
| MS.gene064520.t1 | AT3G54740 | 39.604 | 101 | 61 | 0 | 625 | 725 | 77 | 177 | 2.48e-15 | 80.1 |
| MS.gene064520.t1 | AT3G54740 | 39.604 | 101 | 61 | 0 | 625 | 725 | 77 | 177 | 2.48e-15 | 80.1 |
| MS.gene064520.t1 | AT3G54740 | 39.604 | 101 | 61 | 0 | 625 | 725 | 77 | 177 | 2.48e-15 | 80.1 |
| MS.gene064520.t1 | AT3G54740 | 39.604 | 101 | 61 | 0 | 625 | 725 | 77 | 177 | 2.48e-15 | 80.1 |
| MS.gene064520.t1 | AT3G54740 | 39.604 | 101 | 61 | 0 | 625 | 725 | 29 | 129 | 2.99e-15 | 79.3 |
| MS.gene064520.t1 | AT3G54740 | 39.604 | 101 | 61 | 0 | 625 | 725 | 29 | 129 | 2.99e-15 | 79.3 |
| MS.gene064520.t1 | AT3G54740 | 39.604 | 101 | 61 | 0 | 625 | 725 | 29 | 129 | 2.99e-15 | 79.3 |
| MS.gene064520.t1 | AT3G54740 | 39.604 | 101 | 61 | 0 | 625 | 725 | 29 | 129 | 2.99e-15 | 79.3 |
| MS.gene064520.t1 | AT1G04890 | 42.969 | 128 | 70 | 2 | 591 | 716 | 82 | 208 | 3.50e-14 | 76.3 |
| MS.gene064520.t1 | AT4G13160 | 47.872 | 94 | 49 | 0 | 622 | 715 | 117 | 210 | 1.82e-13 | 72.4 |
Find 131 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATCTGTTGAAGCCTTCT+TGG | 0.160198 | 5.3:+63273778 | MS.gene064520:CDS |
| GTGAAAATTGCTTGGCTTCT+AGG | 0.206836 | 5.3:+63273604 | MS.gene064520:CDS |
| CTTGTTCTTCCATCATTCTT+TGG | 0.217588 | 5.3:-63276002 | None:intergenic |
| AAGCAACCAATTGTTCTTCT+TGG | 0.220911 | 5.3:-63276534 | None:intergenic |
| ACAAAATTTGCCAAATGTTT+TGG | 0.233461 | 5.3:+63273417 | MS.gene064520:CDS |
| ACAGATAAGGAGGGTAAATT+TGG | 0.246430 | 5.3:-63273764 | None:intergenic |
| TGTTTACCTTGTGCATTATC+TGG | 0.252484 | 5.3:-63274509 | None:intergenic |
| TCTGCTGACCTAGGAGTTTC+AGG | 0.253809 | 5.3:-63275691 | None:intergenic |
| ATCCGACAATGACAGAAATT+TGG | 0.280174 | 5.3:+63274826 | MS.gene064520:CDS |
| CAGAAATTTGGAAGCAGATA+TGG | 0.283479 | 5.3:+63274838 | MS.gene064520:CDS |
| TTCTCTGCTTCATCTAAATA+TGG | 0.289720 | 5.3:-63276573 | None:intergenic |
| CAATGTGAAACCTGCATAAT+AGG | 0.290320 | 5.3:-63274107 | None:intergenic |
| ATAGAATCTATTAGCTTAAC+AGG | 0.302400 | 5.3:-63274203 | None:intergenic |
| CATGAGAAACATGATGAAAA+TGG | 0.306053 | 5.3:+63273696 | MS.gene064520:CDS |
| GATGGAGCTTGAAGAAAGTT+TGG | 0.320863 | 5.3:+63274388 | MS.gene064520:CDS |
| AGAATTTCTCCAACATTGTA+TGG | 0.334868 | 5.3:+63276767 | MS.gene064520:CDS |
| ATCACTTGAAATCATCAATA+TGG | 0.336778 | 5.3:+63274139 | MS.gene064520:CDS |
| AGAGGAAGTATTGATCAAAA+TGG | 0.367658 | 5.3:+63274340 | MS.gene064520:CDS |
| TAGTGTATGCATTTCTTGAA+TGG | 0.368218 | 5.3:+63273346 | MS.gene064520:CDS |
| AGAAGGAATTGGAAGAGTAT+AGG | 0.372537 | 5.3:+63276100 | MS.gene064520:CDS |
| TGATGATACCGTTTCTAACT+TGG | 0.372874 | 5.3:+63276293 | MS.gene064520:CDS |
| CTATCCATTTCACTTATCAT+AGG | 0.373876 | 5.3:-63276675 | None:intergenic |
| GAAGGAATTGGAAGAGTATA+GGG | 0.377022 | 5.3:+63276101 | MS.gene064520:CDS |
| AGAGGAAAAGATAATTTCAT+TGG | 0.377885 | 5.3:+63276419 | MS.gene064520:CDS |
| TGAATTACGCCTTAAGAACT+TGG | 0.379118 | 5.3:+63276869 | MS.gene064520:CDS |
| GCAAGAACTTGAGAAGGAAT+TGG | 0.385367 | 5.3:+63276089 | MS.gene064520:CDS |
| CACAAAGAAGACTATTCTAA+TGG | 0.388166 | 5.3:+63276489 | MS.gene064520:CDS |
| AAAATGGAGAGAGTTTAAAT+AGG | 0.391672 | 5.3:+63273712 | MS.gene064520:CDS |
| GTAGTTCAAATTTCTGTGAA+TGG | 0.392563 | 5.3:+63274455 | MS.gene064520:CDS |
| CATGAAACTGAAAACTCATT+TGG | 0.392989 | 5.3:+63273636 | MS.gene064520:CDS |
| AGATCAACTCAAAGCATTAG+AGG | 0.392996 | 5.3:+63276401 | MS.gene064520:CDS |
| GATCATTGTCCAAGTTCTTA+AGG | 0.394095 | 5.3:-63276878 | None:intergenic |
| TTGTAATCATTGCCATTGTT+TGG | 0.398108 | 5.3:-63275933 | None:intergenic |
| TTCCAAATTTCTGTCATTGT+CGG | 0.401114 | 5.3:-63274828 | None:intergenic |
| AAACTTGAACTCTGATGAAA+AGG | 0.403932 | 5.3:+63274013 | MS.gene064520:CDS |
| TGTATGGGATCCATACAAAA+TGG | 0.406925 | 5.3:+63276783 | MS.gene064520:CDS |
| TTCTGATGCTCCTATTATGC+AGG | 0.413743 | 5.3:+63274097 | MS.gene064520:CDS |
| CTCTTTGAGAAAACAGAATC+AGG | 0.416556 | 5.3:+63275745 | MS.gene064520:CDS |
| AGTTCCTATGATAAGTGAAA+TGG | 0.425926 | 5.3:+63276671 | MS.gene064520:CDS |
| TCTATATCTTTAGAAGTTGA+AGG | 0.427647 | 5.3:+63274416 | MS.gene064520:CDS |
| AAGAAGAACAATTGGTTGCT+TGG | 0.429766 | 5.3:+63276536 | MS.gene064520:CDS |
| ACGCTTGATTGCGGTTCAAT+CGG | 0.430956 | 5.3:-63274311 | None:intergenic |
| ATTTGCATTTGATAGAGAAT+TGG | 0.437319 | 5.3:+63276614 | MS.gene064520:CDS |
| TATTAACCGTTCAACGTCAA+TGG | 0.441249 | 5.3:-63274180 | None:intergenic |
| GTTAGAAACGGTATCATCAT+TGG | 0.443026 | 5.3:-63276289 | None:intergenic |
| TGCACACAAGAAGATGAATC+TGG | 0.444733 | 5.3:+63274719 | MS.gene064520:CDS |
| TAGTACTTTAGAAGAATTTG+AGG | 0.444834 | 5.3:+63276359 | MS.gene064520:CDS |
| CAGTGTAAATGATAATGAAA+TGG | 0.445770 | 5.3:+63275573 | MS.gene064520:CDS |
| AGCCGGTCGATTGTTAAAAC+CGG | 0.449648 | 5.3:-63275820 | None:intergenic |
| TGAGGATCTAGAGGAGGAGA+AGG | 0.452240 | 5.3:+63274259 | MS.gene064520:CDS |
| TTGAAGCCTTCTTGGTATGA+TGG | 0.459164 | 5.3:+63273786 | MS.gene064520:CDS |
| TGGTTTAAGACCAAAACATT+TGG | 0.460628 | 5.3:-63273427 | None:intergenic |
| TTCACCAAGCAAAGACTTGT+AGG | 0.462618 | 5.3:+63276923 | MS.gene064520:CDS |
| CAATCTCCAAGAAGAACAAT+TGG | 0.464940 | 5.3:+63276528 | MS.gene064520:CDS |
| AAGATAATTTCATTGGAAGA+TGG | 0.470072 | 5.3:+63276426 | MS.gene064520:CDS |
| CGGTTCAATCGGTGACTCAC+TGG | 0.470776 | 5.3:-63274300 | None:intergenic |
| TGAATCATGCAAATTGAATG+AGG | 0.474317 | 5.3:+63274241 | MS.gene064520:CDS |
| GATGAGAGTTCATCAAGATA+TGG | 0.474936 | 5.3:+63276462 | MS.gene064520:CDS |
| AGCACTGAGAGCTCTTTGTT+CGG | 0.478445 | 5.3:-63275860 | None:intergenic |
| TATGCCTACAAGTCTTTGCT+TGG | 0.481502 | 5.3:-63276927 | None:intergenic |
| AACTGAACTCGATCGATCCT+CGG | 0.488164 | 5.3:-63273988 | None:intergenic |
| CAAGAAGGCTTCAACAGATA+AGG | 0.490047 | 5.3:-63273777 | None:intergenic |
| ACTCATTTGGTATGAGACAT+AGG | 0.495233 | 5.3:+63273649 | MS.gene064520:CDS |
| AGAAGAACATGATCATGATC+AGG | 0.495368 | 5.3:+63273899 | MS.gene064520:CDS |
| TACAAGGCTGCAGGAAGAAA+AGG | 0.495890 | 5.3:+63275951 | MS.gene064520:CDS |
| TGAATGCAACTTAACTATAG+TGG | 0.498253 | 5.3:-63276904 | None:intergenic |
| GAGTAGGTTGGTTCTTCAGA+TGG | 0.507610 | 5.3:-63275301 | None:intergenic |
| ATGTTGAGAAGAATGAAAGA+TGG | 0.509499 | 5.3:+63276162 | MS.gene064520:CDS |
| ATAAACTTCCTGAAACTCCT+AGG | 0.514133 | 5.3:+63275683 | MS.gene064520:CDS |
| TCTTGTTCTTGTTGCAACAC+CGG | 0.514596 | 5.3:+63276207 | MS.gene064520:CDS |
| GGCAATGATTACAAGGCTGC+AGG | 0.518083 | 5.3:+63275942 | MS.gene064520:CDS |
| AGGTTGATCGCGTTTATGAC+AGG | 0.518142 | 5.3:+63276721 | MS.gene064520:CDS |
| TGATACCGTTTCTAACTTGG+AGG | 0.518834 | 5.3:+63276296 | MS.gene064520:CDS |
| ATACAAAATGGTGGTGATGA+AGG | 0.519176 | 5.3:+63276795 | MS.gene064520:CDS |
| TGCATTATCTGGTTCTTCTG+TGG | 0.527662 | 5.3:-63274498 | None:intergenic |
| TGACAGTTCATCGGTGTAGC+CGG | 0.531224 | 5.3:-63276226 | None:intergenic |
| AGAAAAGGCGGCAATGCAGA+TGG | 0.535335 | 5.3:+63275966 | MS.gene064520:CDS |
| CATTTCATTATCATTTACAC+TGG | 0.540128 | 5.3:-63275572 | None:intergenic |
| CCATCAATCATCAAAATGCT+CGG | 0.540613 | 5.3:+63275639 | MS.gene064520:CDS |
| CTATATCTTTAGAAGTTGAA+GGG | 0.544204 | 5.3:+63274417 | MS.gene064520:CDS |
| GTATGGATCCCATACAATGT+TGG | 0.545411 | 5.3:-63276776 | None:intergenic |
| TGCAGAGAAAACAAACATGA+TGG | 0.549690 | 5.3:+63274370 | MS.gene064520:CDS |
| AGAGAAGCAAGAACTTGAGA+AGG | 0.550787 | 5.3:+63276083 | MS.gene064520:CDS |
| GAAAGTGTGTATTGAAGAAG+AGG | 0.550976 | 5.3:+63276701 | MS.gene064520:CDS |
| TCAATAGAAGATGACAAAGA+AGG | 0.551727 | 5.3:+63273843 | MS.gene064520:CDS |
| AAATGGTGGTGATGAAGGAA+AGG | 0.555471 | 5.3:+63276800 | MS.gene064520:CDS |
| GGATGGTAGCGTTGCAAGTG+AGG | 0.560662 | 5.3:+63275783 | MS.gene064520:CDS |
| ATTGAATTTGAGATAAACAA+TGG | 0.561453 | 5.3:+63273876 | MS.gene064520:CDS |
| GATGGAAACTATTTAAGCAA+AGG | 0.562706 | 5.3:+63273804 | MS.gene064520:CDS |
| TATTCTCAGAGAGGTGGCCG+AGG | 0.563232 | 5.3:+63273971 | MS.gene064520:CDS |
| ATTACAATACCAAAGAATGA+TGG | 0.564697 | 5.3:+63275993 | MS.gene064520:CDS |
| GAATTTCTCCAACATTGTAT+GGG | 0.568122 | 5.3:+63276768 | MS.gene064520:CDS |
| ACAAAGCCATTGACGTTGAA+CGG | 0.568420 | 5.3:+63274174 | MS.gene064520:CDS |
| ATAAAATCATCAACAGCACT+TGG | 0.569946 | 5.3:-63274065 | None:intergenic |
| TTTGGTATGAGACATAGGAT+TGG | 0.570047 | 5.3:+63273654 | MS.gene064520:CDS |
| TGAGGTAGAATACAGCGATC+CGG | 0.570543 | 5.3:+63275801 | MS.gene064520:CDS |
| TATCTCCTCCAAGTTAGAAA+CGG | 0.572085 | 5.3:-63276301 | None:intergenic |
| TAGTTTCCATCATACCAAGA+AGG | 0.574251 | 5.3:-63273792 | None:intergenic |
| TGCAACTTAACTATAGTGGA+TGG | 0.575938 | 5.3:-63276900 | None:intergenic |
| TAGCATGTGTGAAAATTGCT+TGG | 0.580838 | 5.3:+63273596 | MS.gene064520:CDS |
| CAAATTGAATGAGGATCTAG+AGG | 0.582974 | 5.3:+63274250 | MS.gene064520:CDS |
| TGACATGCATTGACTTGAGT+AGG | 0.583561 | 5.3:-63275317 | None:intergenic |
| GCAGCTGAGATTTCAAACCT+TGG | 0.585082 | 5.3:+63273537 | MS.gene064520:CDS |
| GAAGGCTTCAACAGATAAGG+AGG | 0.588495 | 5.3:-63273774 | None:intergenic |
| GCAATCAAGCGTCTTAGAAG+AGG | 0.588801 | 5.3:+63274322 | MS.gene064520:CDS |
| AAACAATGGCAATGATTACA+AGG | 0.589570 | 5.3:+63275935 | MS.gene064520:CDS |
| ACTTGCAACGCTACCATCCA+CGG | 0.593320 | 5.3:-63275779 | None:intergenic |
| TGATCATGATCAGGATGAAG+AGG | 0.593848 | 5.3:+63273908 | MS.gene064520:CDS |
| TTGGTTAGTAGCTATTGCTG+AGG | 0.595521 | 5.3:-63275914 | None:intergenic |
| ATGCATTGACTTGAGTAGGT+TGG | 0.596080 | 5.3:-63275313 | None:intergenic |
| GTTGGTGTTTCTATGTAACA+TGG | 0.600046 | 5.3:-63273307 | None:intergenic |
| AAGATCAACTGACAGTTCAT+CGG | 0.602771 | 5.3:-63276235 | None:intergenic |
| GATGATTAGAGCAGTAGCCA+AGG | 0.602881 | 5.3:-63273554 | None:intergenic |
| TCTTCTAAGACGCTTGATTG+CGG | 0.606157 | 5.3:-63274320 | None:intergenic |
| TAGGTTGGTTCTTCAGATGG+AGG | 0.608490 | 5.3:-63275298 | None:intergenic |
| TGCATTGCATCTGCTGACCT+AGG | 0.622751 | 5.3:-63275700 | None:intergenic |
| TGTTTCTCATGACTTAACCA+TGG | 0.628154 | 5.3:-63273684 | None:intergenic |
| GGAGCAGAAGAATCCGTGGA+TGG | 0.629443 | 5.3:+63275766 | MS.gene064520:CDS |
| ATGCAATGCACTACATGCAG+AGG | 0.632820 | 5.3:+63275713 | MS.gene064520:CDS |
| ATCAGGAGCAGAAGAATCCG+TGG | 0.633581 | 5.3:+63275762 | MS.gene064520:CDS |
| AATAGCTACTAACCAAACAA+TGG | 0.642191 | 5.3:+63275921 | MS.gene064520:CDS |
| ATCTTCTTCAAGTGACAGTG+AGG | 0.656914 | 5.3:+63275348 | MS.gene064520:CDS |
| TGGATCAAGTGATGATGATG+AGG | 0.658998 | 5.3:+63274739 | MS.gene064520:CDS |
| ATTGAATGAGGATCTAGAGG+AGG | 0.663122 | 5.3:+63274253 | MS.gene064520:CDS |
| GAACAAGAAAATGCTCCACC+AGG | 0.665638 | 5.3:+63274863 | MS.gene064520:CDS |
| AAGGCTTCAACAGATAAGGA+GGG | 0.667591 | 5.3:-63273773 | None:intergenic |
| AAGGCTGCAGGAAGAAAAGG+CGG | 0.674245 | 5.3:+63275954 | MS.gene064520:CDS |
| AGCCTTGAACAGAAAAGACA+AGG | 0.674692 | 5.3:-63273450 | None:intergenic |
| GAAGAACCAGATAATGCACA+AGG | 0.705101 | 5.3:+63274503 | MS.gene064520:CDS |
| CTTGAACAGAAAAGACAAGG+TGG | 0.722462 | 5.3:-63273447 | None:intergenic |
| ATGGGATCCATACAAAATGG+TGG | 0.735054 | 5.3:+63276786 | MS.gene064520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTAGATAGATTGAAAAA+AGG | - | chr5.3:63275518-63275537 | None:intergenic | 20.0% |
| !! | GAATGATCATATTAGATATA+TGG | + | chr5.3:63274619-63274638 | MS.gene064520:intron | 20.0% |
| !! | TTATGAAATTTGCAAATTCT+TGG | + | chr5.3:63274645-63274664 | MS.gene064520:intron | 20.0% |
| !!! | ATTGAATTTGAGATAAACAA+TGG | + | chr5.3:63273876-63273895 | MS.gene064520:CDS | 20.0% |
| !!! | TAGAATTACAACTATTTTGT+TGG | - | chr5.3:63273328-63273347 | None:intergenic | 20.0% |
| ! | AAAATGGAGAGAGTTTAAAT+AGG | + | chr5.3:63273712-63273731 | MS.gene064520:CDS | 25.0% |
| ! | AAGATAATTTCATTGGAAGA+TGG | + | chr5.3:63276426-63276445 | MS.gene064520:CDS | 25.0% |
| ! | AATAAACTGAAAACAGTCTA+TGG | - | chr5.3:63275069-63275088 | None:intergenic | 25.0% |
| ! | AATATCAGCTGAAAAAATTG+AGG | + | chr5.3:63275606-63275625 | MS.gene064520:CDS | 25.0% |
| ! | AGAGGAAAAGATAATTTCAT+TGG | + | chr5.3:63276419-63276438 | MS.gene064520:CDS | 25.0% |
| ! | ATCACTTGAAATCATCAATA+TGG | + | chr5.3:63274139-63274158 | MS.gene064520:CDS | 25.0% |
| ! | ATTACAATACCAAAGAATGA+TGG | + | chr5.3:63275993-63276012 | MS.gene064520:CDS | 25.0% |
| ! | ATTTGCATTTGATAGAGAAT+TGG | + | chr5.3:63276614-63276633 | MS.gene064520:CDS | 25.0% |
| ! | CATGAATTATTAATACCGTT+TGG | - | chr5.3:63275248-63275267 | None:intergenic | 25.0% |
| ! | CATTTCATTATCATTTACAC+TGG | - | chr5.3:63275575-63275594 | None:intergenic | 25.0% |
| ! | CTTAATTTATCACACATGTT+TGG | + | chr5.3:63274971-63274990 | MS.gene064520:intron | 25.0% |
| ! | GTACTAGATATAAAAACTCA+CGG | - | chr5.3:63275426-63275445 | None:intergenic | 25.0% |
| ! | TGATCATATTAGATATATGG+TGG | + | chr5.3:63274622-63274641 | MS.gene064520:intron | 25.0% |
| !! | ACAAAATTTGCCAAATGTTT+TGG | + | chr5.3:63273417-63273436 | MS.gene064520:CDS | 25.0% |
| !! | ATAGAATCTATTAGCTTAAC+AGG | - | chr5.3:63274206-63274225 | None:intergenic | 25.0% |
| !! | CAGTGTAAATGATAATGAAA+TGG | + | chr5.3:63275573-63275592 | MS.gene064520:CDS | 25.0% |
| !! | CTATATCTTTAGAAGTTGAA+GGG | + | chr5.3:63274417-63274436 | MS.gene064520:CDS | 25.0% |
| !! | TAGTACTTTAGAAGAATTTG+AGG | + | chr5.3:63276359-63276378 | MS.gene064520:CDS | 25.0% |
| !! | TCTATATCTTTAGAAGTTGA+AGG | + | chr5.3:63274416-63274435 | MS.gene064520:CDS | 25.0% |
| !! | TTTTCAGTTTCATGATGATT+TGG | - | chr5.3:63273630-63273649 | None:intergenic | 25.0% |
| !!! | ATCATTTACACTGGTTTTAT+CGG | - | chr5.3:63275566-63275585 | None:intergenic | 25.0% |
| !!! | CTGAGAAATGAATTTTTCAA+AGG | - | chr5.3:63274780-63274799 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAACTATTC+TGG | - | chr5.3:63275104-63275123 | None:intergenic | 25.0% |
| AAACAATGGCAATGATTACA+AGG | + | chr5.3:63275935-63275954 | MS.gene064520:CDS | 30.0% | |
| AAACTTGAACTCTGATGAAA+AGG | + | chr5.3:63274013-63274032 | MS.gene064520:CDS | 30.0% | |
| AACAGAAACATGTTATGCAA+AGG | - | chr5.3:63274599-63274618 | None:intergenic | 30.0% | |
| AATAGCTACTAACCAAACAA+TGG | + | chr5.3:63275921-63275940 | MS.gene064520:CDS | 30.0% | |
| AATTCAGATGTTCATCCAAA+CGG | + | chr5.3:63275230-63275249 | MS.gene064520:intron | 30.0% | |
| AGAATTTCTCCAACATTGTA+TGG | + | chr5.3:63276767-63276786 | MS.gene064520:CDS | 30.0% | |
| AGAGTATAGGGAAAAAGTTA+TGG | + | chr5.3:63276113-63276132 | MS.gene064520:CDS | 30.0% | |
| AGTTCCTATGATAAGTGAAA+TGG | + | chr5.3:63276671-63276690 | MS.gene064520:CDS | 30.0% | |
| ATAAAATCATCAACAGCACT+TGG | - | chr5.3:63274068-63274087 | None:intergenic | 30.0% | |
| ATGTTGAGAAGAATGAAAGA+TGG | + | chr5.3:63276162-63276181 | MS.gene064520:CDS | 30.0% | |
| CACAAAGAAGACTATTCTAA+TGG | + | chr5.3:63276489-63276508 | MS.gene064520:CDS | 30.0% | |
| CATGAAACTGAAAACTCATT+TGG | + | chr5.3:63273636-63273655 | MS.gene064520:CDS | 30.0% | |
| CATGAGAAACATGATGAAAA+TGG | + | chr5.3:63273696-63273715 | MS.gene064520:CDS | 30.0% | |
| CTATCCATTTCACTTATCAT+AGG | - | chr5.3:63276678-63276697 | None:intergenic | 30.0% | |
| GAATTTCTCCAACATTGTAT+GGG | + | chr5.3:63276768-63276787 | MS.gene064520:CDS | 30.0% | |
| GATGGAAACTATTTAAGCAA+AGG | + | chr5.3:63273804-63273823 | MS.gene064520:CDS | 30.0% | |
| GTAGTTCAAATTTCTGTGAA+TGG | + | chr5.3:63274455-63274474 | MS.gene064520:CDS | 30.0% | |
| TAGTGTATGCATTTCTTGAA+TGG | + | chr5.3:63273346-63273365 | MS.gene064520:CDS | 30.0% | |
| TCAATAGAAGATGACAAAGA+AGG | + | chr5.3:63273843-63273862 | MS.gene064520:CDS | 30.0% | |
| TGAATCATGCAAATTGAATG+AGG | + | chr5.3:63274241-63274260 | MS.gene064520:CDS | 30.0% | |
| TGAATGCAACTTAACTATAG+TGG | - | chr5.3:63276907-63276926 | None:intergenic | 30.0% | |
| TTCCAAATTTCTGTCATTGT+CGG | - | chr5.3:63274831-63274850 | None:intergenic | 30.0% | |
| TTCTCTGCTTCATCTAAATA+TGG | - | chr5.3:63276576-63276595 | None:intergenic | 30.0% | |
| TTGTAATCATTGCCATTGTT+TGG | - | chr5.3:63275936-63275955 | None:intergenic | 30.0% | |
| TTTATCACACATGTTTGGAT+CGG | + | chr5.3:63274976-63274995 | MS.gene064520:intron | 30.0% | |
| ! | TGCTTGATGTATAGAGTTTT+TGG | + | chr5.3:63274537-63274556 | MS.gene064520:intron | 30.0% |
| ! | TGGTTTAAGACCAAAACATT+TGG | - | chr5.3:63273430-63273449 | None:intergenic | 30.0% |
| ! | TTCAGCTGATATTGTTTTCT+CGG | - | chr5.3:63275599-63275618 | None:intergenic | 30.0% |
| !! | AGAGGAAGTATTGATCAAAA+TGG | + | chr5.3:63274340-63274359 | MS.gene064520:CDS | 30.0% |
| !!! | ATAGGATTGGTTTTATTCCA+TGG | + | chr5.3:63273667-63273686 | MS.gene064520:CDS | 30.0% |
| !!! | TGAAAGTTTTATTCTCAGAG+AGG | + | chr5.3:63273962-63273981 | MS.gene064520:CDS | 30.0% |
| AAGAAGAACAATTGGTTGCT+TGG | + | chr5.3:63276536-63276555 | MS.gene064520:CDS | 35.0% | |
| AAGATCAACTGACAGTTCAT+CGG | - | chr5.3:63276238-63276257 | None:intergenic | 35.0% | |
| AAGCAACCAATTGTTCTTCT+TGG | - | chr5.3:63276537-63276556 | None:intergenic | 35.0% | |
| ACAGATAAGGAGGGTAAATT+TGG | - | chr5.3:63273767-63273786 | None:intergenic | 35.0% | |
| ACTCATTTGGTATGAGACAT+AGG | + | chr5.3:63273649-63273668 | MS.gene064520:CDS | 35.0% | |
| AGAAGAACATGATCATGATC+AGG | + | chr5.3:63273899-63273918 | MS.gene064520:CDS | 35.0% | |
| AGAATTGAGTGCTTCACAAT+TGG | - | chr5.3:63275476-63275495 | None:intergenic | 35.0% | |
| ATAAACTTCCTGAAACTCCT+AGG | + | chr5.3:63275683-63275702 | MS.gene064520:CDS | 35.0% | |
| ATCAGCTGAAAAAATTGAGG+AGG | + | chr5.3:63275609-63275628 | MS.gene064520:CDS | 35.0% | |
| ATCCGACAATGACAGAAATT+TGG | + | chr5.3:63274826-63274845 | MS.gene064520:CDS | 35.0% | |
| CAAATTGAATGAGGATCTAG+AGG | + | chr5.3:63274250-63274269 | MS.gene064520:CDS | 35.0% | |
| CAATCTCCAAGAAGAACAAT+TGG | + | chr5.3:63276528-63276547 | MS.gene064520:CDS | 35.0% | |
| CAATGTGAAACCTGCATAAT+AGG | - | chr5.3:63274110-63274129 | None:intergenic | 35.0% | |
| CAGAAATTTGGAAGCAGATA+TGG | + | chr5.3:63274838-63274857 | MS.gene064520:CDS | 35.0% | |
| CCATCAATCATCAAAATGCT+CGG | + | chr5.3:63275639-63275658 | MS.gene064520:CDS | 35.0% | |
| CTTGTTCTTCCATCATTCTT+TGG | - | chr5.3:63276005-63276024 | None:intergenic | 35.0% | |
| GATCATTGTCCAAGTTCTTA+AGG | - | chr5.3:63276881-63276900 | None:intergenic | 35.0% | |
| GATGAGAGTTCATCAAGATA+TGG | + | chr5.3:63276462-63276481 | MS.gene064520:CDS | 35.0% | |
| GTTAGAAACGGTATCATCAT+TGG | - | chr5.3:63276292-63276311 | None:intergenic | 35.0% | |
| TAGCATGTGTGAAAATTGCT+TGG | + | chr5.3:63273596-63273615 | MS.gene064520:CDS | 35.0% | |
| TAGTTTCCATCATACCAAGA+AGG | - | chr5.3:63273795-63273814 | None:intergenic | 35.0% | |
| TATCTCCTCCAAGTTAGAAA+CGG | - | chr5.3:63276304-63276323 | None:intergenic | 35.0% | |
| TATTAACCGTTCAACGTCAA+TGG | - | chr5.3:63274183-63274202 | None:intergenic | 35.0% | |
| TGAATTACGCCTTAAGAACT+TGG | + | chr5.3:63276869-63276888 | MS.gene064520:CDS | 35.0% | |
| TGATGATACCGTTTCTAACT+TGG | + | chr5.3:63276293-63276312 | MS.gene064520:CDS | 35.0% | |
| TGCAGAGAAAACAAACATGA+TGG | + | chr5.3:63274370-63274389 | MS.gene064520:CDS | 35.0% | |
| TGTATGGGATCCATACAAAA+TGG | + | chr5.3:63276783-63276802 | MS.gene064520:CDS | 35.0% | |
| TGTTTACCTTGTGCATTATC+TGG | - | chr5.3:63274512-63274531 | None:intergenic | 35.0% | |
| TGTTTCTCATGACTTAACCA+TGG | - | chr5.3:63273687-63273706 | None:intergenic | 35.0% | |
| TTATGCAAAGGAAAGATCGA+TGG | - | chr5.3:63274587-63274606 | None:intergenic | 35.0% | |
| TTTGGTATGAGACATAGGAT+TGG | + | chr5.3:63273654-63273673 | MS.gene064520:CDS | 35.0% | |
| ! | AGAAGGAATTGGAAGAGTAT+AGG | + | chr5.3:63276100-63276119 | MS.gene064520:CDS | 35.0% |
| ! | AGATCAACTCAAAGCATTAG+AGG | + | chr5.3:63276401-63276420 | MS.gene064520:CDS | 35.0% |
| ! | ATACAAAATGGTGGTGATGA+AGG | + | chr5.3:63276795-63276814 | MS.gene064520:CDS | 35.0% |
| ! | CTCTTTGAGAAAACAGAATC+AGG | + | chr5.3:63275745-63275764 | MS.gene064520:CDS | 35.0% |
| ! | GAAAGTGTGTATTGAAGAAG+AGG | + | chr5.3:63276701-63276720 | MS.gene064520:CDS | 35.0% |
| ! | GAAGGAATTGGAAGAGTATA+GGG | + | chr5.3:63276101-63276120 | MS.gene064520:CDS | 35.0% |
| ! | GTTGGTGTTTCTATGTAACA+TGG | - | chr5.3:63273310-63273329 | None:intergenic | 35.0% |
| ! | TGCAACTTAACTATAGTGGA+TGG | - | chr5.3:63276903-63276922 | None:intergenic | 35.0% |
| ! | TTCATCACCACCATTTTGTA+TGG | - | chr5.3:63276796-63276815 | None:intergenic | 35.0% |
| !!! | AAGTTTTATTCTCAGAGAGG+TGG | + | chr5.3:63273965-63273984 | MS.gene064520:CDS | 35.0% |
| AAGGCTTCAACAGATAAGGA+GGG | - | chr5.3:63273776-63273795 | None:intergenic | 40.0% | |
| ACAAAGCCATTGACGTTGAA+CGG | + | chr5.3:63274174-63274193 | MS.gene064520:CDS | 40.0% | |
| AGAGAAGCAAGAACTTGAGA+AGG | + | chr5.3:63276083-63276102 | MS.gene064520:CDS | 40.0% | |
| AGCCTTGAACAGAAAAGACA+AGG | - | chr5.3:63273453-63273472 | None:intergenic | 40.0% | |
| ATCTTCTTCAAGTGACAGTG+AGG | + | chr5.3:63275348-63275367 | MS.gene064520:CDS | 40.0% | |
| ATGGGATCCATACAAAATGG+TGG | + | chr5.3:63276786-63276805 | MS.gene064520:CDS | 40.0% | |
| ATTGAATGAGGATCTAGAGG+AGG | + | chr5.3:63274253-63274272 | MS.gene064520:CDS | 40.0% | |
| CAAGAAGGCTTCAACAGATA+AGG | - | chr5.3:63273780-63273799 | None:intergenic | 40.0% | |
| CTTATCTGTTGAAGCCTTCT+TGG | + | chr5.3:63273778-63273797 | MS.gene064520:CDS | 40.0% | |
| CTTGAACAGAAAAGACAAGG+TGG | - | chr5.3:63273450-63273469 | None:intergenic | 40.0% | |
| GAAGAACCAGATAATGCACA+AGG | + | chr5.3:63274503-63274522 | MS.gene064520:CDS | 40.0% | |
| GAGTGCTTCACAATTGGATA+TGG | - | chr5.3:63275470-63275489 | None:intergenic | 40.0% | |
| GATGGAGCTTGAAGAAAGTT+TGG | + | chr5.3:63274388-63274407 | MS.gene064520:CDS | 40.0% | |
| GCAAGAACTTGAGAAGGAAT+TGG | + | chr5.3:63276089-63276108 | MS.gene064520:CDS | 40.0% | |
| GGATGCAGAAAAAGATGAGA+AGG | + | chr5.3:63274034-63274053 | MS.gene064520:CDS | 40.0% | |
| GTATGGATCCCATACAATGT+TGG | - | chr5.3:63276779-63276798 | None:intergenic | 40.0% | |
| GTGAAAATTGCTTGGCTTCT+AGG | + | chr5.3:63273604-63273623 | MS.gene064520:CDS | 40.0% | |
| TCTTGTTCTTGTTGCAACAC+CGG | + | chr5.3:63276207-63276226 | MS.gene064520:CDS | 40.0% | |
| TGATACCGTTTCTAACTTGG+AGG | + | chr5.3:63276296-63276315 | MS.gene064520:CDS | 40.0% | |
| TGATCATGATCAGGATGAAG+AGG | + | chr5.3:63273908-63273927 | MS.gene064520:CDS | 40.0% | |
| TGCACACAAGAAGATGAATC+TGG | + | chr5.3:63274719-63274738 | MS.gene064520:CDS | 40.0% | |
| TTCTGATGCTCCTATTATGC+AGG | + | chr5.3:63274097-63274116 | MS.gene064520:CDS | 40.0% | |
| TTGAAGCCTTCTTGGTATGA+TGG | + | chr5.3:63273786-63273805 | MS.gene064520:CDS | 40.0% | |
| TTGGTTAGTAGCTATTGCTG+AGG | - | chr5.3:63275917-63275936 | None:intergenic | 40.0% | |
| ! | AAATGGTGGTGATGAAGGAA+AGG | + | chr5.3:63276800-63276819 | MS.gene064520:CDS | 40.0% |
| ! | AGCTCTTTGTTCGGCTTTTA+GGG | - | chr5.3:63275854-63275873 | None:intergenic | 40.0% |
| ! | CACCTTGTCTTTTCTGTTCA+AGG | + | chr5.3:63273448-63273467 | MS.gene064520:CDS | 40.0% |
| ! | TGGATCAAGTGATGATGATG+AGG | + | chr5.3:63274739-63274758 | MS.gene064520:CDS | 40.0% |
| !! | ATCCGGTTTTAACAATCGAC+CGG | + | chr5.3:63275818-63275837 | MS.gene064520:CDS | 40.0% |
| !! | ATGCATTGACTTGAGTAGGT+TGG | - | chr5.3:63275316-63275335 | None:intergenic | 40.0% |
| !! | CCGAGCATTTTGATGATTGA+TGG | - | chr5.3:63275642-63275661 | None:intergenic | 40.0% |
| !! | CTTTTAGGGATGCTTTTAGC+CGG | - | chr5.3:63275840-63275859 | None:intergenic | 40.0% |
| !! | TCTTCTAAGACGCTTGATTG+CGG | - | chr5.3:63274323-63274342 | None:intergenic | 40.0% |
| !! | TGACATGCATTGACTTGAGT+AGG | - | chr5.3:63275320-63275339 | None:intergenic | 40.0% |
| !! | TGCATTATCTGGTTCTTCTG+TGG | - | chr5.3:63274501-63274520 | None:intergenic | 40.0% |
| AACTGAACTCGATCGATCCT+CGG | - | chr5.3:63273991-63274010 | None:intergenic | 45.0% | |
| ACGCTTGATTGCGGTTCAAT+CGG | - | chr5.3:63274314-63274333 | None:intergenic | 45.0% | |
| AGCCGGTCGATTGTTAAAAC+CGG | - | chr5.3:63275823-63275842 | None:intergenic | 45.0% | |
| ATGCAATGCACTACATGCAG+AGG | + | chr5.3:63275713-63275732 | MS.gene064520:CDS | 45.0% | |
| GAACAAGAAAATGCTCCACC+AGG | + | chr5.3:63274863-63274882 | MS.gene064520:CDS | 45.0% | |
| GAAGGCTTCAACAGATAAGG+AGG | - | chr5.3:63273777-63273796 | None:intergenic | 45.0% | |
| GATGATTAGAGCAGTAGCCA+AGG | - | chr5.3:63273557-63273576 | None:intergenic | 45.0% | |
| GCAATCAAGCGTCTTAGAAG+AGG | + | chr5.3:63274322-63274341 | MS.gene064520:CDS | 45.0% | |
| GCAGCTGAGATTTCAAACCT+TGG | + | chr5.3:63273537-63273556 | MS.gene064520:CDS | 45.0% | |
| TACAAGGCTGCAGGAAGAAA+AGG | + | chr5.3:63275951-63275970 | MS.gene064520:CDS | 45.0% | |
| TGAGGTAGAATACAGCGATC+CGG | + | chr5.3:63275801-63275820 | MS.gene064520:CDS | 45.0% | |
| ! | AGCACTGAGAGCTCTTTGTT+CGG | - | chr5.3:63275863-63275882 | None:intergenic | 45.0% |
| ! | AGGTTGATCGCGTTTATGAC+AGG | + | chr5.3:63276721-63276740 | MS.gene064520:CDS | 45.0% |
| ! | GAGCTCTTTGTTCGGCTTTT+AGG | - | chr5.3:63275855-63275874 | None:intergenic | 45.0% |
| !! | GAGTAGGTTGGTTCTTCAGA+TGG | - | chr5.3:63275304-63275323 | None:intergenic | 45.0% |
| !! | TAGGTTGGTTCTTCAGATGG+AGG | - | chr5.3:63275301-63275320 | None:intergenic | 45.0% |
| AAGGCTGCAGGAAGAAAAGG+CGG | + | chr5.3:63275954-63275973 | MS.gene064520:CDS | 50.0% | |
| ACTTGCAACGCTACCATCCA+CGG | - | chr5.3:63275782-63275801 | None:intergenic | 50.0% | |
| AGAAAAGGCGGCAATGCAGA+TGG | + | chr5.3:63275966-63275985 | MS.gene064520:CDS | 50.0% | |
| ATCAGGAGCAGAAGAATCCG+TGG | + | chr5.3:63275762-63275781 | MS.gene064520:CDS | 50.0% | |
| CCAGGTACAAAGACAGTGCA+TGG | + | chr5.3:63274881-63274900 | MS.gene064520:intron | 50.0% | |
| CCATGCACTGTCTTTGTACC+TGG | - | chr5.3:63274884-63274903 | None:intergenic | 50.0% | |
| GGCAATGATTACAAGGCTGC+AGG | + | chr5.3:63275942-63275961 | MS.gene064520:CDS | 50.0% | |
| TCTGCTGACCTAGGAGTTTC+AGG | - | chr5.3:63275694-63275713 | None:intergenic | 50.0% | |
| TGACAGTTCATCGGTGTAGC+CGG | - | chr5.3:63276229-63276248 | None:intergenic | 50.0% | |
| TGAGGATCTAGAGGAGGAGA+AGG | + | chr5.3:63274259-63274278 | MS.gene064520:CDS | 50.0% | |
| TGCACTGTCTTTGTACCTGG+TGG | - | chr5.3:63274881-63274900 | None:intergenic | 50.0% | |
| TGCATTGCATCTGCTGACCT+AGG | - | chr5.3:63275703-63275722 | None:intergenic | 50.0% | |
| CGGTTCAATCGGTGACTCAC+TGG | - | chr5.3:63274303-63274322 | None:intergenic | 55.0% | |
| GGAGCAGAAGAATCCGTGGA+TGG | + | chr5.3:63275766-63275785 | MS.gene064520:CDS | 55.0% | |
| TATTCTCAGAGAGGTGGCCG+AGG | + | chr5.3:63273971-63273990 | MS.gene064520:CDS | 55.0% | |
| ! | GGATGGTAGCGTTGCAAGTG+AGG | + | chr5.3:63275783-63275802 | MS.gene064520:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 63273285 | 63276944 | 63273285 | ID=MS.gene064520 |
| chr5.3 | mRNA | 63273285 | 63276944 | 63273285 | ID=MS.gene064520.t1;Parent=MS.gene064520 |
| chr5.3 | exon | 63273285 | 63274524 | 63273285 | ID=MS.gene064520.t1.exon1;Parent=MS.gene064520.t1 |
| chr5.3 | CDS | 63273285 | 63274524 | 63273285 | ID=cds.MS.gene064520.t1;Parent=MS.gene064520.t1 |
| chr5.3 | exon | 63274678 | 63274884 | 63274678 | ID=MS.gene064520.t1.exon2;Parent=MS.gene064520.t1 |
| chr5.3 | CDS | 63274678 | 63274884 | 63274678 | ID=cds.MS.gene064520.t1;Parent=MS.gene064520.t1 |
| chr5.3 | exon | 63275290 | 63275424 | 63275290 | ID=MS.gene064520.t1.exon3;Parent=MS.gene064520.t1 |
| chr5.3 | CDS | 63275290 | 63275424 | 63275290 | ID=cds.MS.gene064520.t1;Parent=MS.gene064520.t1 |
| chr5.3 | exon | 63275560 | 63276944 | 63275560 | ID=MS.gene064520.t1.exon4;Parent=MS.gene064520.t1 |
| chr5.3 | CDS | 63275560 | 63276944 | 63275560 | ID=cds.MS.gene064520.t1;Parent=MS.gene064520.t1 |
| Gene Sequence |
| Protein sequence |
