Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066033.t1 | XP_003590834.1 | 98.5 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 1.90E-111 | 411.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066033.t1 | O22797 | 74.3 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 3.3e-88 | 325.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066033.t1 | B7FNC0 | 98.5 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 1.4e-111 | 411.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04984 | MS.gene066033 | 0.808675 | 2.76E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene066033 | 0.837024 | 6.63E-57 | -1.69E-46 |
| MS.gene050277 | MS.gene066033 | 0.835816 | 1.35E-56 | -1.69E-46 |
| MS.gene050288 | MS.gene066033 | 0.811706 | 6.12E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene066033 | 0.803581 | 3.26E-49 | -1.69E-46 |
| MS.gene050320 | MS.gene066033 | 0.817072 | 3.99E-52 | -1.69E-46 |
| MS.gene050439 | MS.gene066033 | 0.809172 | 2.16E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene066033 | 0.801712 | 7.91E-49 | -1.69E-46 |
| MS.gene050752 | MS.gene066033 | 0.808408 | 3.14E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene066033 | 0.838436 | 2.88E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene066033 | 0.838865 | 2.23E-57 | -1.69E-46 |
| MS.gene051063 | MS.gene066033 | 0.830342 | 3.10E-55 | -1.69E-46 |
| MS.gene051746 | MS.gene066033 | 0.810141 | 1.34E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene066033 | 0.814155 | 1.78E-51 | -1.69E-46 |
| MS.gene051756 | MS.gene066033 | 0.85671 | 2.68E-62 | -1.69E-46 |
| MS.gene051757 | MS.gene066033 | 0.840405 | 8.87E-58 | -1.69E-46 |
| MS.gene051903 | MS.gene066033 | 0.824217 | 9.10E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene066033 | 0.823952 | 1.05E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene066033 | 0.824899 | 6.29E-54 | -1.69E-46 |
| MS.gene054403 | MS.gene066033 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene066033 | 0.835446 | 1.67E-56 | -1.69E-46 |
| MS.gene056631 | MS.gene066033 | 0.824312 | 8.64E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene066033 | 0.840245 | 9.76E-58 | -1.69E-46 |
| MS.gene056896 | MS.gene066033 | 0.811551 | 6.62E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene066033 | 0.827846 | 1.25E-54 | -1.69E-46 |
| MS.gene057094 | MS.gene066033 | 0.842912 | 1.94E-58 | -1.69E-46 |
| MS.gene057140 | MS.gene066033 | 0.808103 | 3.65E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene066033 | 0.830577 | 2.72E-55 | -1.69E-46 |
| MS.gene057360 | MS.gene066033 | 0.804588 | 2.01E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene066033 | 0.80299 | 4.32E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene066033 | 0.810959 | 8.89E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene066033 | 0.847564 | 1.07E-59 | -1.69E-46 |
| MS.gene058906 | MS.gene066033 | 0.848333 | 6.55E-60 | -1.69E-46 |
| MS.gene06001 | MS.gene066033 | 0.843272 | 1.55E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene066033 | 0.834397 | 3.07E-56 | -1.69E-46 |
| MS.gene060586 | MS.gene066033 | 0.800667 | 1.29E-48 | -1.69E-46 |
| MS.gene060869 | MS.gene066033 | 0.804508 | 2.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066033.t1 | MTR_1g075710 | 98.515 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 2.76e-151 | 417 |
| MS.gene066033.t1 | MTR_1g041495 | 81.683 | 202 | 37 | 0 | 1 | 202 | 1 | 202 | 9.84e-126 | 353 |
| MS.gene066033.t1 | MTR_1g041495 | 78.199 | 211 | 37 | 1 | 1 | 202 | 1 | 211 | 1.09e-122 | 345 |
| MS.gene066033.t1 | MTR_1g075700 | 89.571 | 163 | 13 | 1 | 1 | 163 | 1 | 159 | 2.96e-106 | 303 |
| MS.gene066033.t1 | MTR_1g028960 | 34.921 | 189 | 118 | 1 | 19 | 202 | 35 | 223 | 3.90e-40 | 136 |
| MS.gene066033.t1 | MTR_3g090530 | 37.433 | 187 | 112 | 3 | 21 | 202 | 36 | 222 | 5.69e-39 | 133 |
| MS.gene066033.t1 | MTR_1g028970 | 34.574 | 188 | 119 | 1 | 19 | 202 | 36 | 223 | 7.50e-39 | 133 |
| MS.gene066033.t1 | MTR_3g090530 | 37.017 | 181 | 109 | 3 | 21 | 196 | 36 | 216 | 6.06e-36 | 125 |
| MS.gene066033.t1 | MTR_1g028970 | 33.708 | 178 | 114 | 1 | 19 | 192 | 36 | 213 | 2.93e-35 | 124 |
| MS.gene066033.t1 | MTR_1g028970 | 36.923 | 130 | 82 | 0 | 19 | 148 | 36 | 165 | 3.63e-27 | 102 |
| MS.gene066033.t1 | MTR_3g090530 | 37.984 | 129 | 79 | 1 | 21 | 148 | 36 | 164 | 3.64e-27 | 102 |
| MS.gene066033.t1 | MTR_3g090530 | 36.424 | 151 | 91 | 3 | 57 | 202 | 7 | 157 | 1.32e-26 | 100 |
| MS.gene066033.t1 | MTR_3g090530 | 35.862 | 145 | 88 | 3 | 57 | 196 | 7 | 151 | 1.61e-23 | 92.0 |
| MS.gene066033.t1 | MTR_3g090530 | 36.559 | 93 | 58 | 1 | 57 | 148 | 7 | 99 | 2.05e-14 | 67.0 |
| MS.gene066033.t1 | MTR_2g029520 | 24.476 | 143 | 104 | 1 | 18 | 160 | 28 | 166 | 1.92e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066033.t1 | AT2G33470 | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.25e-116 | 329 |
| MS.gene066033.t1 | AT2G33470 | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.25e-116 | 329 |
| MS.gene066033.t1 | AT1G21360 | 36.842 | 190 | 114 | 2 | 17 | 201 | 34 | 222 | 6.70e-38 | 130 |
| MS.gene066033.t1 | AT3G21260 | 34.444 | 180 | 114 | 1 | 26 | 201 | 53 | 232 | 7.80e-36 | 125 |
| MS.gene066033.t1 | AT1G21360 | 36.646 | 161 | 96 | 2 | 46 | 201 | 1 | 160 | 2.62e-30 | 109 |
| MS.gene066033.t1 | AT1G21360 | 37.879 | 132 | 82 | 0 | 17 | 148 | 34 | 165 | 1.81e-25 | 98.2 |
| MS.gene066033.t1 | AT3G21260 | 33.333 | 147 | 94 | 1 | 59 | 201 | 2 | 148 | 3.56e-25 | 96.3 |
| MS.gene066033.t1 | AT3G21260 | 32.857 | 140 | 90 | 1 | 66 | 201 | 4 | 143 | 2.39e-23 | 91.3 |
Find 49 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAGAATCACAAGTTTC+TGG | 0.197925 | 1.2:-58337585 | MS.gene066033:intron |
| AATTCTGTCACAGCCTTTCT+TGG | 0.198191 | 1.2:-58340047 | MS.gene066033:CDS |
| CTTCTTTAGAGTCTTGTTAT+AGG | 0.217183 | 1.2:+58337833 | None:intergenic |
| ACTATACAGGCAGTTGAATT+TGG | 0.221005 | 1.2:+58338666 | None:intergenic |
| CTTCAGAGCAATGGATTTCT+TGG | 0.230093 | 1.2:-58337919 | MS.gene066033:intron |
| GGTTGGATTAGATAAATATT+TGG | 0.236982 | 1.2:+58338687 | None:intergenic |
| ATTCTTATGGCAGATAAGTT+TGG | 0.303743 | 1.2:-58339256 | MS.gene066033:intron |
| AAACATATACTTCCTGTTAT+AGG | 0.315283 | 1.2:-58340016 | MS.gene066033:intron |
| TCCATGAATTTCTTCCTATC+AGG | 0.324564 | 1.2:+58337677 | None:intergenic |
| GAAACTTGTGATTCTCTTCA+AGG | 0.338646 | 1.2:+58337588 | None:intergenic |
| GAAATTCATGGAGGTGATAC+AGG | 0.370152 | 1.2:-58337666 | MS.gene066033:CDS |
| ATTCAACTGCCTGTATAGTT+TGG | 0.375332 | 1.2:-58338662 | MS.gene066033:CDS |
| AAAGCATGTAAAGTCTGAAC+AGG | 0.386552 | 1.2:-58340074 | MS.gene066033:CDS |
| GAGAAGTCCATTGGTACAAC+TGG | 0.387611 | 1.2:+58338600 | None:intergenic |
| CTCTAAAGAAGTGGCATGGC+TGG | 0.390523 | 1.2:-58337821 | MS.gene066033:CDS |
| ATTTGGATTGGATGAATTGA+AGG | 0.405788 | 1.2:-58337109 | MS.gene066033:CDS |
| CCGCATGCTCAATTAAGTTT+CGG | 0.407021 | 1.2:+58337886 | None:intergenic |
| ATGAATTGAAGGCTTCATAA+AGG | 0.410184 | 1.2:-58337098 | None:intergenic |
| GTAGAGCAATTACCTATAAC+AGG | 0.429002 | 1.2:+58340004 | None:intergenic |
| TACAGGCAGTTGAATTTGGT+TGG | 0.435495 | 1.2:+58338670 | None:intergenic |
| GTTGTACCAATGGACTTCTC+TGG | 0.441414 | 1.2:-58338597 | MS.gene066033:CDS |
| GGCACAGGCTCGATTTGGAT+TGG | 0.445538 | 1.2:-58337121 | MS.gene066033:intron |
| TGACATAGGTGGTAATATAT+CGG | 0.452189 | 1.2:-58339209 | MS.gene066033:intron |
| CAGAGCAATGGATTTCTTGG+TGG | 0.470381 | 1.2:-58337916 | MS.gene066033:CDS |
| CTACTTGTACCAAACTATAC+AGG | 0.482133 | 1.2:+58338653 | None:intergenic |
| TTGTGATTCTCTTCAAGGAA+AGG | 0.512151 | 1.2:+58337593 | None:intergenic |
| CGATGAAGCTTGCTCCTGAT+AGG | 0.512345 | 1.2:-58337691 | MS.gene066033:CDS |
| ATGGACTTCTCTGGCTTACA+AGG | 0.522903 | 1.2:-58338588 | MS.gene066033:intron |
| TCCTGATAGGAAGAAATTCA+TGG | 0.526707 | 1.2:-58337678 | MS.gene066033:CDS |
| CTTGTTATAGGAATCAGTAC+AGG | 0.533723 | 1.2:+58337845 | None:intergenic |
| ATGTAAAATCTTCAGAGCAA+TGG | 0.543737 | 1.2:-58337928 | MS.gene066033:intron |
| CACCTATGTCAGATTTGACA+AGG | 0.546300 | 1.2:+58339221 | None:intergenic |
| CCGAAACTTAATTGAGCATG+CGG | 0.552124 | 1.2:-58337886 | MS.gene066033:CDS |
| TGTTTGCACACATCCAAGAA+AGG | 0.556146 | 1.2:+58340034 | None:intergenic |
| ACTTAATTGAGCATGCGGAT+TGG | 0.558353 | 1.2:-58337881 | MS.gene066033:CDS |
| ATAACAAGACTCTAAAGAAG+TGG | 0.561369 | 1.2:-58337830 | MS.gene066033:CDS |
| GGTACAACTGGATGATGCCT+TGG | 0.564664 | 1.2:+58338612 | None:intergenic |
| GCATCATCCAGTTGTACCAA+TGG | 0.585383 | 1.2:-58338607 | MS.gene066033:CDS |
| AGTTGAAACTAAAACTGCCA+AGG | 0.615757 | 1.2:-58338629 | MS.gene066033:CDS |
| TGTAAGCCAGAGAAGTCCAT+TGG | 0.619617 | 1.2:+58338591 | None:intergenic |
| ATGGAGGTGATACAGGGAGG+TGG | 0.623912 | 1.2:-58337659 | MS.gene066033:CDS |
| ACCCTTGTCAAATCTGACAT+AGG | 0.626109 | 1.2:-58339223 | MS.gene066033:CDS |
| AAATTCATGGAGGTGATACA+GGG | 0.645139 | 1.2:-58337665 | MS.gene066033:CDS |
| AAGACTCTAAAGAAGTGGCA+TGG | 0.651111 | 1.2:-58337825 | MS.gene066033:CDS |
| CTTGTCAAATCTGACATAGG+TGG | 0.659236 | 1.2:-58339220 | MS.gene066033:CDS |
| AAGCATGTAAAGTCTGAACA+GGG | 0.684936 | 1.2:-58340073 | MS.gene066033:CDS |
| ACCTATGTCAGATTTGACAA+GGG | 0.696405 | 1.2:+58339222 | None:intergenic |
| TTCATGGAGGTGATACAGGG+AGG | 0.725186 | 1.2:-58337662 | MS.gene066033:CDS |
| TGATAGGAAGAAATTCATGG+AGG | 0.764708 | 1.2:-58337675 | MS.gene066033:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAACTTAAATTGTAT+TGG | - | chr1.2:58338435-58338454 | MS.gene066033:intron | 10.0% |
| !! | TAAAGATATTAATTTCTTAA+AGG | - | chr1.2:58340041-58340060 | MS.gene066033:CDS | 10.0% |
| !!! | TCTAAATCATTTTAATTTTA+AGG | - | chr1.2:58337693-58337712 | MS.gene066033:CDS | 10.0% |
| !! | AAAAGTTCTATAAAATGTAA+AGG | + | chr1.2:58338375-58338394 | None:intergenic | 15.0% |
| !! | AAAGTTCTATAAAATGTAAA+GGG | + | chr1.2:58338374-58338393 | None:intergenic | 15.0% |
| !! | AAATAAAGATTAGGAAAAAA+AGG | - | chr1.2:58338787-58338806 | MS.gene066033:intron | 15.0% |
| !! | AATACTAACAAATTACATAA+AGG | + | chr1.2:58339236-58339255 | None:intergenic | 15.0% |
| !! | AATCATATGAGATATATATA+CGG | + | chr1.2:58338068-58338087 | None:intergenic | 15.0% |
| !! | AGAAATTAATATCTTTATCA+TGG | + | chr1.2:58340038-58340057 | None:intergenic | 15.0% |
| !! | GGAATATTAGATTAAATTTA+TGG | + | chr1.2:58337333-58337352 | None:intergenic | 15.0% |
| !! | TTCGATAAAAAATATAAGTT+TGG | + | chr1.2:58338413-58338432 | None:intergenic | 15.0% |
| !!! | TTTACATTTTATAGAACTTT+TGG | - | chr1.2:58338374-58338393 | MS.gene066033:intron | 15.0% |
| !!! | TTTTCAAATTCATATTTAGT+TGG | - | chr1.2:58338193-58338212 | MS.gene066033:intron | 15.0% |
| !! | AATATTTCATTAAGAGGAAA+AGG | - | chr1.2:58337717-58337736 | MS.gene066033:intron | 20.0% |
| !! | ATCATATGAGATATATATAC+GGG | + | chr1.2:58338067-58338086 | None:intergenic | 20.0% |
| !! | TAAGGAAATATTTCATTAAG+AGG | - | chr1.2:58337711-58337730 | MS.gene066033:intron | 20.0% |
| !! | TATGCATTTGATTATTCAAA+CGG | + | chr1.2:58337291-58337310 | None:intergenic | 20.0% |
| !! | TGATACAAGTAATCATATTA+TGG | + | chr1.2:58337917-58337936 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTTTAGCATGTA+TGG | - | chr1.2:58337521-58337540 | MS.gene066033:intron | 20.0% |
| !!! | CATGTTTTAATGTACAAATT+TGG | - | chr1.2:58337544-58337563 | MS.gene066033:intron | 20.0% |
| !!! | GGATTTGTTTTCTATTTTTT+AGG | - | chr1.2:58339441-58339460 | MS.gene066033:intron | 20.0% |
| !!! | TTTTTCTTCAATTTATGTTG+AGG | - | chr1.2:58339131-58339150 | MS.gene066033:intron | 20.0% |
| ! | AAACATATACTTCCTGTTAT+AGG | - | chr1.2:58337197-58337216 | MS.gene066033:intron | 25.0% |
| ! | AACTTAAATAACCAAGAAAC+AGG | + | chr1.2:58337673-58337692 | None:intergenic | 25.0% |
| ! | ACATCAAAATGTCAAATCAA+AGG | + | chr1.2:58337237-58337256 | None:intergenic | 25.0% |
| ! | ACTTATAATTCCTACTGTTA+TGG | - | chr1.2:58338675-58338694 | MS.gene066033:CDS | 25.0% |
| ! | ATACTAGCATGTTTAATGTA+AGG | - | chr1.2:58337477-58337496 | MS.gene066033:intron | 25.0% |
| ! | ATGCATTTGATTATTCAAAC+GGG | + | chr1.2:58337290-58337309 | None:intergenic | 25.0% |
| ! | GAAAAACACAAGATAAAAAC+AGG | + | chr1.2:58338042-58338061 | None:intergenic | 25.0% |
| ! | GAACAGTCAAAATAAAGATT+AGG | - | chr1.2:58338778-58338797 | MS.gene066033:intron | 25.0% |
| ! | TAAGTTAAGCAGTAATTGTT+TGG | + | chr1.2:58338660-58338679 | None:intergenic | 25.0% |
| ! | TCTAGCTAAAATAATCCTTT+CGG | + | chr1.2:58338835-58338854 | None:intergenic | 25.0% |
| ! | TTATAATTGAAGCTACTGAA+AGG | + | chr1.2:58339102-58339121 | None:intergenic | 25.0% |
| ! | TTTATTATCTTTCAGCTCAA+TGG | - | chr1.2:58339071-58339090 | MS.gene066033:intron | 25.0% |
| !! | ACATTTTATAGAACTTTTCC+TGG | - | chr1.2:58338243-58338262 | MS.gene066033:intron | 25.0% |
| !! | GGTTGGATTAGATAAATATT+TGG | + | chr1.2:58338529-58338548 | None:intergenic | 25.0% |
| !! | GTAACAAATATTTTACCTAC+AGG | - | chr1.2:58339496-58339515 | MS.gene066033:intron | 25.0% |
| !! | TTGGTTCTTTAATTATACTG+TGG | - | chr1.2:58337563-58337582 | MS.gene066033:intron | 25.0% |
| !!! | AACTTAAAAGCTTGTTGTTT+TGG | - | chr1.2:58340071-58340090 | MS.gene066033:CDS | 25.0% |
| !!! | GATGTGTTTTATTTTGTGAT+GGG | - | chr1.2:58337252-58337271 | MS.gene066033:intron | 25.0% |
| !!! | TGATGTGTTTTATTTTGTGA+TGG | - | chr1.2:58337251-58337270 | MS.gene066033:intron | 25.0% |
| !!! | TGTATGTTTTTGATAGAGAT+GGG | + | chr1.2:58337767-58337786 | None:intergenic | 25.0% |
| !!! | TTACTAATTTTGTTTTCCCA+TGG | - | chr1.2:58339180-58339199 | MS.gene066033:intron | 25.0% |
| AAAATGTTCACATACTGCTA+AGG | + | chr1.2:58337635-58337654 | None:intergenic | 30.0% | |
| AAATGTTCACATACTGCTAA+GGG | + | chr1.2:58337634-58337653 | None:intergenic | 30.0% | |
| ATAGTATAGCCATATAACCA+TGG | + | chr1.2:58338142-58338161 | None:intergenic | 30.0% | |
| ATGCAATATCTGTGCATTTA+TGG | - | chr1.2:58337594-58337613 | MS.gene066033:CDS | 30.0% | |
| ATGTAAAATCTTCAGAGCAA+TGG | - | chr1.2:58339285-58339304 | MS.gene066033:intron | 30.0% | |
| ATTCTTATGGCAGATAAGTT+TGG | - | chr1.2:58337957-58337976 | MS.gene066033:intron | 30.0% | |
| ATTGCTGACATTAATCTACA+AGG | - | chr1.2:58339688-58339707 | MS.gene066033:intron | 30.0% | |
| CATGACACATTAATTGATCT+TGG | + | chr1.2:58339864-58339883 | None:intergenic | 30.0% | |
| CCAAAAATGCAATATGATAC+TGG | - | chr1.2:58338905-58338924 | MS.gene066033:intron | 30.0% | |
| GAAAAGGAATAGAAAACAAG+AGG | - | chr1.2:58337733-58337752 | MS.gene066033:intron | 30.0% | |
| TAGTACAGAGTAAGAATATG+TGG | + | chr1.2:58338478-58338497 | None:intergenic | 30.0% | |
| TATATGCATAAGATTCCGAA+AGG | - | chr1.2:58338817-58338836 | MS.gene066033:intron | 30.0% | |
| TCATGTAGTATATGGTAACA+TGG | - | chr1.2:58339469-58339488 | MS.gene066033:intron | 30.0% | |
| TCGGAATCTTATGCATATAT+TGG | + | chr1.2:58338816-58338835 | None:intergenic | 30.0% | |
| TGACATAGGTGGTAATATAT+CGG | - | chr1.2:58338004-58338023 | MS.gene066033:intron | 30.0% | |
| TGCATAGACTTGAATTGATA+TGG | + | chr1.2:58337354-58337373 | None:intergenic | 30.0% | |
| TTGTGTTACAATTTGATGCT+TGG | - | chr1.2:58337874-58337893 | MS.gene066033:CDS | 30.0% | |
| ! | AAACAAATAAGCATTTGCTG+AGG | + | chr1.2:58339213-58339232 | None:intergenic | 30.0% |
| ! | ATAACAAGACTCTAAAGAAG+TGG | - | chr1.2:58339383-58339402 | MS.gene066033:intron | 30.0% |
| ! | ATTTGGATTGGATGAATTGA+AGG | - | chr1.2:58340104-58340123 | MS.gene066033:CDS | 30.0% |
| ! | CCAGTATCATATTGCATTTT+TGG | + | chr1.2:58338908-58338927 | None:intergenic | 30.0% |
| ! | TTTGTGATGGGAATATAGAA+TGG | - | chr1.2:58337264-58337283 | MS.gene066033:intron | 30.0% |
| !! | CTTCTTTAGAGTCTTGTTAT+AGG | + | chr1.2:58339383-58339402 | None:intergenic | 30.0% |
| !! | GTGTATGTTTTTGATAGAGA+TGG | + | chr1.2:58337768-58337787 | None:intergenic | 30.0% |
| !!! | ACTGTTTTTAACCTGTTTCT+TGG | - | chr1.2:58337659-58337678 | MS.gene066033:CDS | 30.0% |
| !!! | CTAATTGAGTCACTTTTTCA+AGG | - | chr1.2:58339023-58339042 | MS.gene066033:intron | 30.0% |
| AAAACATGCCACACAATCAT+CGG | + | chr1.2:58337508-58337527 | None:intergenic | 35.0% | |
| AAAGCATGTAAAGTCTGAAC+AGG | - | chr1.2:58337139-58337158 | MS.gene066033:intron | 35.0% | |
| AAATTCATGGAGGTGATACA+GGG | - | chr1.2:58339548-58339567 | MS.gene066033:intron | 35.0% | |
| AACCATGGTATGTCATCTTA+AGG | + | chr1.2:58338127-58338146 | None:intergenic | 35.0% | |
| AAGCATGTAAAGTCTGAACA+GGG | - | chr1.2:58337140-58337159 | MS.gene066033:intron | 35.0% | |
| AATGTTCACATACTGCTAAG+GGG | + | chr1.2:58337633-58337652 | None:intergenic | 35.0% | |
| ACATCTGCATGAAATCATCT+GGG | - | chr1.2:58339805-58339824 | MS.gene066033:intron | 35.0% | |
| ACCTATGTCAGATTTGACAA+GGG | + | chr1.2:58337994-58338013 | None:intergenic | 35.0% | |
| ACTATACAGGCAGTTGAATT+TGG | + | chr1.2:58338550-58338569 | None:intergenic | 35.0% | |
| AGTATGTGTCGAATATAAGG+AGG | + | chr1.2:58337462-58337481 | None:intergenic | 35.0% | |
| AGTTGAAACTAAAACTGCCA+AGG | - | chr1.2:58338584-58338603 | MS.gene066033:intron | 35.0% | |
| ATAAAATGTAAAGGGCAACC+CGG | + | chr1.2:58338366-58338385 | None:intergenic | 35.0% | |
| ATTATCTTTCAGCTCAATGG+TGG | - | chr1.2:58339074-58339093 | MS.gene066033:intron | 35.0% | |
| ATTCAACTGCCTGTATAGTT+TGG | - | chr1.2:58338551-58338570 | MS.gene066033:intron | 35.0% | |
| CATGCAAAACAAACTCTACT+TGG | + | chr1.2:58338751-58338770 | None:intergenic | 35.0% | |
| CTACTTGTACCAAACTATAC+AGG | + | chr1.2:58338563-58338582 | None:intergenic | 35.0% | |
| GAAACTTGTGATTCTCTTCA+AGG | + | chr1.2:58339628-58339647 | None:intergenic | 35.0% | |
| GATGACATACCATGGTTATA+TGG | - | chr1.2:58338130-58338149 | MS.gene066033:intron | 35.0% | |
| GCTAGTATGTGTCGAATATA+AGG | + | chr1.2:58337465-58337484 | None:intergenic | 35.0% | |
| GTAGAGCAATTACCTATAAC+AGG | + | chr1.2:58337212-58337231 | None:intergenic | 35.0% | |
| TAATCTACAAGGCCTGAAAA+AGG | - | chr1.2:58339699-58339718 | MS.gene066033:intron | 35.0% | |
| TACATCTGCATGAAATCATC+TGG | - | chr1.2:58339804-58339823 | MS.gene066033:intron | 35.0% | |
| TAGGCTCAATAAAGATACAG+CGG | + | chr1.2:58337424-58337443 | None:intergenic | 35.0% | |
| TATACCTTGAAGTGTATGCT+GGG | - | chr1.2:58338159-58338178 | MS.gene066033:intron | 35.0% | |
| TATTTGGATTCCAATCTCTG+CGG | + | chr1.2:58338513-58338532 | None:intergenic | 35.0% | |
| TCCATGAATTTCTTCCTATC+AGG | + | chr1.2:58339539-58339558 | None:intergenic | 35.0% | |
| TCCTGATAGGAAGAAATTCA+TGG | - | chr1.2:58339535-58339554 | MS.gene066033:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr1.2:58338274-58338293 | MS.gene066033:intron | 35.0% | |
| TGAAGAGAATCACAAGTTTC+TGG | - | chr1.2:58339628-58339647 | MS.gene066033:intron | 35.0% | |
| TGATAGGAAGAAATTCATGG+AGG | - | chr1.2:58339538-58339557 | MS.gene066033:intron | 35.0% | |
| TTCCTTAAGATGACATACCA+TGG | - | chr1.2:58338122-58338141 | MS.gene066033:intron | 35.0% | |
| TTGTGATTCTCTTCAAGGAA+AGG | + | chr1.2:58339623-58339642 | None:intergenic | 35.0% | |
| TTTGAGAACACCATAACAGT+AGG | + | chr1.2:58338688-58338707 | None:intergenic | 35.0% | |
| ! | CTTGTTATAGGAATCAGTAC+AGG | + | chr1.2:58339371-58339390 | None:intergenic | 35.0% |
| ! | GTTCATCTTGGATTTGAGAT+TGG | - | chr1.2:58339834-58339853 | MS.gene066033:intron | 35.0% |
| ! | TGTATCATTGTTGACTGAAC+TGG | - | chr1.2:58337930-58337949 | MS.gene066033:intron | 35.0% |
| !! | AGGAGTGTTCATGTAGTATA+TGG | - | chr1.2:58339461-58339480 | MS.gene066033:intron | 35.0% |
| !! | CTGAACTGGTGTTATTCTTA+TGG | - | chr1.2:58337944-58337963 | MS.gene066033:intron | 35.0% |
| !! | TAGTTCTAGCTTCACTGTAA+GGG | - | chr1.2:58339420-58339439 | MS.gene066033:intron | 35.0% |
| !! | TCCCTGCATTTTGAAAACAA+GGG | - | chr1.2:58339745-58339764 | MS.gene066033:intron | 35.0% |
| !! | TTCCCTGCATTTTGAAAACA+AGG | - | chr1.2:58339744-58339763 | MS.gene066033:intron | 35.0% |
| !!! | ATCCCTTGTTTTCAAAATGC+AGG | + | chr1.2:58339750-58339769 | None:intergenic | 35.0% |
| !!! | CACTTTTTCAAGGTGTGTTA+GGG | - | chr1.2:58339033-58339052 | MS.gene066033:intron | 35.0% |
| !!! | GCATTTTTGGTCCCAAATTT+TGG | + | chr1.2:58338895-58338914 | None:intergenic | 35.0% |
| !!! | TATGTTGAGGTTTTGAAGCT+CGG | - | chr1.2:58339144-58339163 | MS.gene066033:intron | 35.0% |
| !!! | TCACTTTTTCAAGGTGTGTT+AGG | - | chr1.2:58339032-58339051 | MS.gene066033:intron | 35.0% |
| !!! | TCCCTTGTTTTCAAAATGCA+GGG | + | chr1.2:58339749-58339768 | None:intergenic | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr1.2:58338275-58338294 | None:intergenic | 35.0% |
| AATGCAGAGTTTCAGGGATT+TGG | + | chr1.2:58339904-58339923 | None:intergenic | 40.0% | |
| AATTCTGTCACAGCCTTTCT+TGG | - | chr1.2:58337166-58337185 | MS.gene066033:intron | 40.0% | |
| ACACGATAATGCAGAGTTTC+AGG | + | chr1.2:58339911-58339930 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr1.2:58338268-58338287 | MS.gene066033:intron | 40.0% | |
| ACATACTGCTAAGGGGTAAA+AGG | + | chr1.2:58337626-58337645 | None:intergenic | 40.0% | |
| ACCCTTGTCAAATCTGACAT+AGG | - | chr1.2:58337990-58338009 | MS.gene066033:intron | 40.0% | |
| ACTTAATTGAGCATGCGGAT+TGG | - | chr1.2:58339332-58339351 | MS.gene066033:intron | 40.0% | |
| CACCTATGTCAGATTTGACA+AGG | + | chr1.2:58337995-58338014 | None:intergenic | 40.0% | |
| CACGATAATGCAGAGTTTCA+GGG | + | chr1.2:58339910-58339929 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr1.2:58338269-58338288 | MS.gene066033:intron | 40.0% | |
| CCGAAACTTAATTGAGCATG+CGG | - | chr1.2:58339327-58339346 | MS.gene066033:intron | 40.0% | |
| CCGCATGCTCAATTAAGTTT+CGG | + | chr1.2:58339330-58339349 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1.2:58338300-58338319 | MS.gene066033:intron | 40.0% | |
| CTATACCTTGAAGTGTATGC+TGG | - | chr1.2:58338158-58338177 | MS.gene066033:intron | 40.0% | |
| CTTGTCAAATCTGACATAGG+TGG | - | chr1.2:58337993-58338012 | MS.gene066033:intron | 40.0% | |
| GAAATTCATGGAGGTGATAC+AGG | - | chr1.2:58339547-58339566 | MS.gene066033:intron | 40.0% | |
| GAGGAGTAAGGTAAAGAAGT+AGG | + | chr1.2:58337443-58337462 | None:intergenic | 40.0% | |
| GCACGTGCTTTCCAAAATTT+GGG | - | chr1.2:58338881-58338900 | MS.gene066033:intron | 40.0% | |
| GTCGAATATAAGGAGGAGTA+AGG | + | chr1.2:58337455-58337474 | None:intergenic | 40.0% | |
| GTGTGTGTGTGTTTGTGTAT+TGG | + | chr1.2:58339986-58340005 | None:intergenic | 40.0% | |
| TACAGGCAGTTGAATTTGGT+TGG | + | chr1.2:58338546-58338565 | None:intergenic | 40.0% | |
| TCTGGGAACAATGTTCATCT+TGG | - | chr1.2:58339822-58339841 | MS.gene066033:intron | 40.0% | |
| TGAAAAAGGAGACTGAACTG+TGG | - | chr1.2:58339713-58339732 | MS.gene066033:intron | 40.0% | |
| TGCACGTGCTTTCCAAAATT+TGG | - | chr1.2:58338880-58338899 | MS.gene066033:intron | 40.0% | |
| TGTGTCATGCATTTACTGCA+CGG | - | chr1.2:58339875-58339894 | MS.gene066033:intron | 40.0% | |
| TGTTTGCACACATCCAAGAA+AGG | + | chr1.2:58337182-58337201 | None:intergenic | 40.0% | |
| ! | AAGACTCTAAAGAAGTGGCA+TGG | - | chr1.2:58339388-58339407 | MS.gene066033:intron | 40.0% |
| ! | ACAGTTCAGTCTCCTTTTTC+AGG | + | chr1.2:58339714-58339733 | None:intergenic | 40.0% |
| ! | ATAGTGGCGATTTAGGTTAC+AGG | + | chr1.2:58337386-58337405 | None:intergenic | 40.0% |
| ! | CTTCAGAGCAATGGATTTCT+TGG | - | chr1.2:58339294-58339313 | MS.gene066033:intron | 40.0% |
| ! | GTCTTTTAAGCTGCAGATAG+TGG | + | chr1.2:58337402-58337421 | None:intergenic | 40.0% |
| !! | CTAGTTCTAGCTTCACTGTA+AGG | - | chr1.2:58339419-58339438 | MS.gene066033:intron | 40.0% |
| !!! | AAAGCTTGTTGTTTTGGCAC+AGG | - | chr1.2:58340077-58340096 | MS.gene066033:CDS | 40.0% |
| !!! | TTTTGTTTTCCCATGGTCAG+AGG | - | chr1.2:58339187-58339206 | MS.gene066033:intron | 40.0% |
| AGGTTACTCCGATGATTGTG+TGG | - | chr1.2:58337497-58337516 | MS.gene066033:intron | 45.0% | |
| GAGAAGTCCATTGGTACAAC+TGG | + | chr1.2:58338616-58338635 | None:intergenic | 45.0% | |
| GCATCATCCAGTTGTACCAA+TGG | - | chr1.2:58338606-58338625 | MS.gene066033:CDS | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1.2:58338299-58338318 | MS.gene066033:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr1.2:58338296-58338315 | MS.gene066033:intron | 45.0% | |
| TACACCCAGCATACACTTCA+AGG | + | chr1.2:58338166-58338185 | None:intergenic | 45.0% | |
| TGTAAGCCAGAGAAGTCCAT+TGG | + | chr1.2:58338625-58338644 | None:intergenic | 45.0% | |
| TTGACTTTCACCGCAGAGAT+TGG | - | chr1.2:58338500-58338519 | MS.gene066033:intron | 45.0% | |
| ! | ATGGACTTCTCTGGCTTACA+AGG | - | chr1.2:58338625-58338644 | MS.gene066033:CDS | 45.0% |
| ! | CAGAGCAATGGATTTCTTGG+TGG | - | chr1.2:58339297-58339316 | MS.gene066033:intron | 45.0% |
| ! | GACTGTTTTCGCTGCTACAT+TGG | - | chr1.2:58337109-58337128 | MS.gene066033:CDS | 45.0% |
| ! | GTTGTACCAATGGACTTCTC+TGG | - | chr1.2:58338616-58338635 | MS.gene066033:CDS | 45.0% |
| ! | GTTTTCGCTGCTACATTGGA+AGG | - | chr1.2:58337113-58337132 | MS.gene066033:CDS | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1.2:58338264-58338283 | None:intergenic | 45.0% |
| !! | GCAAGAATGTTTGCTATGCG+TGG | - | chr1.2:58338975-58338994 | MS.gene066033:intron | 45.0% |
| !!! | AATATATATATTTCTAAATA+TGG | + | chr1.2:58339945-58339964 | None:intergenic | 5.0% |
| CAAGCTTCATCGCTACCTGT+AGG | + | chr1.2:58339514-58339533 | None:intergenic | 50.0% | |
| GGAGACTGAACTGTGGACTT+TGG | - | chr1.2:58339720-58339739 | MS.gene066033:intron | 50.0% | |
| GGTACAACTGGATGATGCCT+TGG | + | chr1.2:58338604-58338623 | None:intergenic | 50.0% | |
| TTCATGGAGGTGATACAGGG+AGG | - | chr1.2:58339551-58339570 | MS.gene066033:intron | 50.0% | |
| ! | CGATGAAGCTTGCTCCTGAT+AGG | - | chr1.2:58339522-58339541 | MS.gene066033:intron | 50.0% |
| ! | CTCTAAAGAAGTGGCATGGC+TGG | - | chr1.2:58339392-58339411 | MS.gene066033:intron | 50.0% |
| ! | GCTGCAGATAGTGGCGATTT+AGG | + | chr1.2:58337393-58337412 | None:intergenic | 50.0% |
| !! | GTTTTGGCACAGGCTCGATT+TGG | - | chr1.2:58340087-58340106 | MS.gene066033:CDS | 50.0% |
| ACTGAAGCTCCCGCATATGC+AGG | + | chr1.2:58338340-58338359 | None:intergenic | 55.0% | |
| ATGGAGGTGATACAGGGAGG+TGG | - | chr1.2:58339554-58339573 | MS.gene066033:intron | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | chr1.2:58338339-58338358 | None:intergenic | 55.0% | |
| TTGCTGAGGCCTCTGACCAT+GGG | + | chr1.2:58339199-58339218 | None:intergenic | 55.0% | |
| TTTGCTGAGGCCTCTGACCA+TGG | + | chr1.2:58339200-58339219 | None:intergenic | 55.0% | |
| !! | GGCACAGGCTCGATTTGGAT+TGG | - | chr1.2:58340092-58340111 | MS.gene066033:CDS | 55.0% |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr1.2:58338344-58338363 | MS.gene066033:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr1.2:58338327-58338346 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr1.2:58338327-58338346 | MS.gene066033:intron | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr1.2:58338328-58338347 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr1.2:58338328-58338347 | MS.gene066033:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1.2:58338312-58338331 | MS.gene066033:intron | 60.0% |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr1.2:58338329-58338348 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1.2:58338314-58338333 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr1.2:58338333-58338352 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr1.2:58338334-58338353 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr1.2:58338345-58338364 | MS.gene066033:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 58337101 | 58340134 | 58337101 | ID=MS.gene066033 |
| chr1.2 | mRNA | 58337101 | 58340134 | 58337101 | ID=MS.gene066033.t1;Parent=MS.gene066033 |
| chr1.2 | exon | 58340017 | 58340134 | 58340017 | ID=MS.gene066033.t1.exon1;Parent=MS.gene066033.t1 |
| chr1.2 | CDS | 58340017 | 58340134 | 58340017 | ID=cds.MS.gene066033.t1;Parent=MS.gene066033.t1 |
| chr1.2 | exon | 58339210 | 58339265 | 58339210 | ID=MS.gene066033.t1.exon2;Parent=MS.gene066033.t1 |
| chr1.2 | CDS | 58339210 | 58339265 | 58339210 | ID=cds.MS.gene066033.t1;Parent=MS.gene066033.t1 |
| chr1.2 | exon | 58338589 | 58338719 | 58338589 | ID=MS.gene066033.t1.exon3;Parent=MS.gene066033.t1 |
| chr1.2 | CDS | 58338589 | 58338719 | 58338589 | ID=cds.MS.gene066033.t1;Parent=MS.gene066033.t1 |
| chr1.2 | exon | 58337800 | 58337935 | 58337800 | ID=MS.gene066033.t1.exon4;Parent=MS.gene066033.t1 |
| chr1.2 | CDS | 58337800 | 58337935 | 58337800 | ID=cds.MS.gene066033.t1;Parent=MS.gene066033.t1 |
| chr1.2 | exon | 58337586 | 58337717 | 58337586 | ID=MS.gene066033.t1.exon5;Parent=MS.gene066033.t1 |
| chr1.2 | CDS | 58337586 | 58337717 | 58337586 | ID=cds.MS.gene066033.t1;Parent=MS.gene066033.t1 |
| chr1.2 | exon | 58337101 | 58337136 | 58337101 | ID=MS.gene066033.t1.exon6;Parent=MS.gene066033.t1 |
| chr1.2 | CDS | 58337101 | 58337136 | 58337101 | ID=cds.MS.gene066033.t1;Parent=MS.gene066033.t1 |
| Gene Sequence |
| Protein sequence |
