Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066728.t1 | XP_003626301.1 | 96 | 252 | 10 | 0 | 1 | 252 | 42 | 293 | 4.90E-133 | 483.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066728.t1 | Q9FZ42 | 78.6 | 252 | 54 | 0 | 1 | 252 | 37 | 288 | 1.1e-114 | 414.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066728.t1 | Q2HTL8 | 96.0 | 252 | 10 | 0 | 1 | 252 | 42 | 293 | 3.5e-133 | 483.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050862 | MS.gene066728 | 0.966943 | 1.33E-126 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28848 | MS.gene066728 | PPI |
| MS.gene066728 | MS.gene072664 | PPI |
| MS.gene066728 | MS.gene07097 | PPI |
| MS.gene066728 | MS.gene31507 | PPI |
| MS.gene07096 | MS.gene066728 | PPI |
| MS.gene050432 | MS.gene066728 | PPI |
| MS.gene28847 | MS.gene066728 | PPI |
| MS.gene066728 | MS.gene043387 | PPI |
| MS.gene066728 | MS.gene30551 | PPI |
| MS.gene066728 | MS.gene03319 | PPI |
| MS.gene066728 | MS.gene80360 | PPI |
| MS.gene021164 | MS.gene066728 | PPI |
| MS.gene066728 | MS.gene028938 | PPI |
| MS.gene050431 | MS.gene066728 | PPI |
| MS.gene066728 | MS.gene003992 | PPI |
| MS.gene019786 | MS.gene066728 | PPI |
| MS.gene066728 | MS.gene055846 | PPI |
| MS.gene85724 | MS.gene066728 | PPI |
| MS.gene41122 | MS.gene066728 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066728.t1 | MTR_7g113650 | 98.810 | 252 | 3 | 0 | 1 | 252 | 42 | 293 | 0.0 | 518 |
| MS.gene066728.t1 | MTR_1g082760 | 88.446 | 251 | 29 | 0 | 1 | 251 | 42 | 292 | 3.51e-170 | 471 |
| MS.gene066728.t1 | MTR_4g131740 | 70.751 | 253 | 73 | 1 | 1 | 252 | 42 | 294 | 5.17e-131 | 372 |
| MS.gene066728.t1 | MTR_6g023590 | 33.462 | 260 | 146 | 9 | 1 | 247 | 15 | 260 | 4.70e-32 | 118 |
| MS.gene066728.t1 | MTR_6g023950 | 34.118 | 255 | 151 | 7 | 1 | 247 | 15 | 260 | 5.44e-31 | 115 |
| MS.gene066728.t1 | MTR_6g023610 | 32.950 | 261 | 150 | 8 | 1 | 249 | 15 | 262 | 1.96e-30 | 114 |
| MS.gene066728.t1 | MTR_6g023990 | 33.205 | 259 | 148 | 8 | 1 | 247 | 16 | 261 | 9.28e-30 | 112 |
| MS.gene066728.t1 | MTR_6g023600 | 34.615 | 260 | 143 | 9 | 1 | 247 | 15 | 260 | 1.74e-29 | 112 |
| MS.gene066728.t1 | MTR_3g085740 | 30.651 | 261 | 149 | 7 | 3 | 250 | 79 | 320 | 5.41e-29 | 112 |
| MS.gene066728.t1 | MTR_7g063270 | 33.858 | 254 | 152 | 8 | 1 | 247 | 18 | 262 | 2.57e-28 | 108 |
| MS.gene066728.t1 | MTR_6g023910 | 31.923 | 260 | 146 | 10 | 2 | 246 | 16 | 259 | 1.77e-26 | 103 |
| MS.gene066728.t1 | MTR_4g132850 | 28.000 | 250 | 166 | 6 | 1 | 247 | 9 | 247 | 2.77e-25 | 100 |
| MS.gene066728.t1 | MTR_4g052320 | 31.154 | 260 | 157 | 7 | 1 | 251 | 10 | 256 | 5.90e-25 | 100 |
| MS.gene066728.t1 | MTR_6g023600 | 33.846 | 260 | 139 | 10 | 1 | 247 | 15 | 254 | 2.12e-24 | 98.2 |
| MS.gene066728.t1 | MTR_7g063260 | 30.980 | 255 | 159 | 8 | 1 | 247 | 18 | 263 | 2.74e-24 | 98.2 |
| MS.gene066728.t1 | MTR_4g052300 | 30.502 | 259 | 156 | 7 | 1 | 250 | 10 | 253 | 3.18e-24 | 98.2 |
| MS.gene066728.t1 | MTR_4g078630 | 30.534 | 262 | 154 | 7 | 1 | 247 | 21 | 269 | 7.04e-24 | 97.4 |
| MS.gene066728.t1 | MTR_4g052350 | 29.134 | 254 | 166 | 6 | 1 | 250 | 16 | 259 | 1.80e-22 | 93.6 |
| MS.gene066728.t1 | MTR_8g442750 | 30.682 | 264 | 151 | 9 | 1 | 247 | 16 | 264 | 1.90e-22 | 94.0 |
| MS.gene066728.t1 | MTR_7g071680 | 29.091 | 275 | 154 | 8 | 1 | 247 | 31 | 292 | 2.47e-22 | 93.6 |
| MS.gene066728.t1 | MTR_4g052340 | 29.804 | 255 | 165 | 6 | 1 | 251 | 16 | 260 | 2.53e-22 | 93.2 |
| MS.gene066728.t1 | MTR_1196s0010 | 31.746 | 252 | 150 | 8 | 2 | 247 | 277 | 512 | 4.51e-22 | 95.1 |
| MS.gene066728.t1 | MTR_3g020670 | 30.769 | 260 | 158 | 6 | 1 | 247 | 18 | 268 | 2.67e-21 | 90.5 |
| MS.gene066728.t1 | MTR_4g064887 | 28.627 | 255 | 171 | 6 | 1 | 252 | 17 | 263 | 2.70e-21 | 90.1 |
| MS.gene066728.t1 | MTR_7g094510 | 28.682 | 258 | 163 | 7 | 2 | 249 | 9 | 255 | 3.35e-21 | 89.7 |
| MS.gene066728.t1 | MTR_7g105590 | 31.088 | 193 | 119 | 5 | 1 | 189 | 10 | 192 | 6.51e-21 | 87.4 |
| MS.gene066728.t1 | MTR_7g063320 | 28.077 | 260 | 166 | 7 | 1 | 250 | 17 | 265 | 1.79e-19 | 85.1 |
| MS.gene066728.t1 | MTR_7g110140 | 29.921 | 254 | 161 | 6 | 1 | 247 | 8 | 251 | 2.63e-19 | 84.7 |
| MS.gene066728.t1 | MTR_7g083870 | 29.615 | 260 | 159 | 7 | 1 | 247 | 37 | 285 | 3.99e-19 | 84.7 |
| MS.gene066728.t1 | MTR_3g068085 | 30.588 | 255 | 164 | 9 | 1 | 251 | 17 | 262 | 4.75e-19 | 84.3 |
| MS.gene066728.t1 | MTR_7g094520 | 27.953 | 254 | 170 | 6 | 2 | 249 | 14 | 260 | 7.61e-19 | 83.6 |
| MS.gene066728.t1 | MTR_4g058810 | 25.287 | 261 | 175 | 6 | 1 | 250 | 13 | 264 | 1.49e-18 | 82.8 |
| MS.gene066728.t1 | MTR_7g105580 | 28.854 | 253 | 147 | 9 | 1 | 247 | 10 | 235 | 1.74e-18 | 82.4 |
| MS.gene066728.t1 | MTR_4g064883 | 28.016 | 257 | 168 | 7 | 1 | 251 | 16 | 261 | 3.18e-18 | 82.0 |
| MS.gene066728.t1 | MTR_2g090165 | 28.137 | 263 | 163 | 8 | 1 | 251 | 8 | 256 | 3.44e-18 | 81.6 |
| MS.gene066728.t1 | MTR_7g063270 | 30.159 | 252 | 115 | 8 | 1 | 247 | 18 | 213 | 3.79e-18 | 80.5 |
| MS.gene066728.t1 | MTR_4g058840 | 25.287 | 261 | 175 | 6 | 1 | 250 | 13 | 264 | 6.99e-18 | 80.9 |
| MS.gene066728.t1 | MTR_4g058820 | 25.287 | 261 | 175 | 6 | 1 | 250 | 13 | 264 | 6.99e-18 | 80.9 |
| MS.gene066728.t1 | MTR_7g110130 | 27.481 | 262 | 169 | 8 | 1 | 252 | 8 | 258 | 1.01e-17 | 80.5 |
| MS.gene066728.t1 | MTR_7g105460 | 32.653 | 196 | 120 | 4 | 1 | 193 | 15 | 201 | 2.04e-17 | 79.7 |
| MS.gene066728.t1 | MTR_7g063390 | 25.969 | 258 | 174 | 7 | 1 | 250 | 18 | 266 | 6.90e-17 | 78.2 |
| MS.gene066728.t1 | MTR_7g110160 | 29.008 | 262 | 144 | 9 | 1 | 251 | 8 | 238 | 8.93e-17 | 77.4 |
| MS.gene066728.t1 | MTR_3g068070 | 31.890 | 254 | 162 | 8 | 1 | 251 | 17 | 262 | 1.20e-16 | 77.4 |
| MS.gene066728.t1 | MTR_7g107670 | 25.194 | 258 | 170 | 6 | 2 | 247 | 36 | 282 | 1.97e-16 | 77.4 |
| MS.gene066728.t1 | MTR_8g096620 | 26.860 | 242 | 165 | 5 | 1 | 241 | 47 | 277 | 4.90e-16 | 76.6 |
| MS.gene066728.t1 | MTR_7g063330 | 27.344 | 256 | 166 | 7 | 1 | 247 | 17 | 261 | 1.16e-15 | 74.7 |
| MS.gene066728.t1 | MTR_6g035395 | 28.346 | 254 | 152 | 6 | 1 | 247 | 7 | 237 | 2.47e-15 | 73.6 |
| MS.gene066728.t1 | MTR_3g068175 | 27.451 | 255 | 172 | 6 | 1 | 251 | 19 | 264 | 3.67e-15 | 73.6 |
| MS.gene066728.t1 | MTR_3g068065 | 28.016 | 257 | 168 | 10 | 1 | 251 | 19 | 264 | 7.73e-15 | 72.8 |
| MS.gene066728.t1 | MTR_3g087850 | 30.570 | 193 | 112 | 7 | 3 | 189 | 30 | 206 | 8.76e-15 | 72.8 |
| MS.gene066728.t1 | MTR_4g097510 | 30.189 | 212 | 124 | 6 | 2 | 206 | 5 | 199 | 1.03e-14 | 72.4 |
| MS.gene066728.t1 | MTR_1g068955 | 27.059 | 255 | 166 | 6 | 2 | 246 | 17 | 261 | 1.21e-14 | 72.0 |
| MS.gene066728.t1 | MTR_8g096580 | 28.311 | 219 | 143 | 6 | 2 | 217 | 48 | 255 | 4.30e-14 | 70.9 |
| MS.gene066728.t1 | MTR_3g087860 | 34.375 | 128 | 79 | 3 | 65 | 189 | 66 | 191 | 3.05e-13 | 68.2 |
| MS.gene066728.t1 | MTR_7g063360 | 26.054 | 261 | 170 | 8 | 1 | 250 | 18 | 266 | 4.43e-13 | 67.4 |
| MS.gene066728.t1 | MTR_3g068175 | 27.027 | 259 | 172 | 7 | 1 | 251 | 19 | 268 | 4.61e-13 | 67.8 |
| MS.gene066728.t1 | MTR_7g080410 | 27.136 | 199 | 126 | 6 | 2 | 191 | 41 | 229 | 2.33e-12 | 65.9 |
| MS.gene066728.t1 | MTR_7g080410 | 27.136 | 199 | 126 | 6 | 2 | 191 | 41 | 229 | 2.77e-12 | 65.9 |
| MS.gene066728.t1 | MTR_4g064887 | 27.179 | 195 | 133 | 4 | 1 | 193 | 17 | 204 | 4.86e-12 | 63.9 |
| MS.gene066728.t1 | MTR_1304s0010 | 30.108 | 186 | 126 | 3 | 63 | 247 | 23 | 205 | 2.32e-11 | 62.0 |
| MS.gene066728.t1 | MTR_5g008850 | 25.439 | 228 | 153 | 6 | 2 | 220 | 48 | 267 | 3.41e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066728.t1 | AT1G54870 | 80.159 | 252 | 50 | 0 | 1 | 252 | 84 | 335 | 1.85e-157 | 441 |
| MS.gene066728.t1 | AT1G54870 | 80.159 | 252 | 50 | 0 | 1 | 252 | 86 | 337 | 2.56e-157 | 440 |
| MS.gene066728.t1 | AT3G05260 | 72.619 | 252 | 68 | 1 | 1 | 252 | 39 | 289 | 5.46e-140 | 394 |
| MS.gene066728.t1 | AT4G05530 | 30.000 | 250 | 161 | 6 | 1 | 247 | 11 | 249 | 9.52e-25 | 99.4 |
| MS.gene066728.t1 | AT5G06060 | 33.333 | 255 | 157 | 8 | 1 | 251 | 11 | 256 | 4.99e-23 | 94.7 |
| MS.gene066728.t1 | AT3G51680 | 28.889 | 270 | 159 | 9 | 1 | 247 | 34 | 293 | 1.21e-21 | 92.0 |
| MS.gene066728.t1 | AT1G24360 | 27.778 | 252 | 168 | 5 | 3 | 250 | 78 | 319 | 1.43e-21 | 92.0 |
| MS.gene066728.t1 | AT2G29350 | 31.518 | 257 | 158 | 7 | 1 | 251 | 17 | 261 | 3.59e-21 | 90.1 |
| MS.gene066728.t1 | AT3G42960 | 29.389 | 262 | 156 | 5 | 2 | 247 | 11 | 259 | 9.02e-21 | 89.0 |
| MS.gene066728.t1 | AT3G04000 | 28.077 | 260 | 174 | 7 | 1 | 250 | 16 | 272 | 1.10e-20 | 88.6 |
| MS.gene066728.t1 | AT2G29150 | 31.518 | 257 | 158 | 8 | 1 | 251 | 18 | 262 | 1.11e-20 | 88.6 |
| MS.gene066728.t1 | AT3G26770 | 28.462 | 260 | 162 | 8 | 1 | 247 | 43 | 291 | 1.18e-20 | 89.4 |
| MS.gene066728.t1 | AT2G47140 | 29.730 | 259 | 155 | 6 | 1 | 247 | 8 | 251 | 1.30e-20 | 88.2 |
| MS.gene066728.t1 | AT3G29260 | 30.469 | 256 | 156 | 7 | 1 | 247 | 8 | 250 | 2.65e-20 | 87.4 |
| MS.gene066728.t1 | AT3G29250 | 29.297 | 256 | 160 | 7 | 1 | 247 | 8 | 251 | 2.98e-20 | 87.4 |
| MS.gene066728.t1 | AT2G29260 | 30.315 | 254 | 166 | 6 | 1 | 251 | 70 | 315 | 3.80e-20 | 88.2 |
| MS.gene066728.t1 | AT1G63380 | 25.483 | 259 | 176 | 6 | 2 | 250 | 20 | 271 | 7.29e-20 | 86.7 |
| MS.gene066728.t1 | AT1G63380 | 25.483 | 259 | 176 | 6 | 2 | 250 | 25 | 276 | 7.38e-20 | 86.7 |
| MS.gene066728.t1 | AT1G52340 | 28.517 | 263 | 163 | 8 | 1 | 247 | 20 | 273 | 7.62e-20 | 86.7 |
| MS.gene066728.t1 | AT1G63380 | 25.483 | 259 | 176 | 6 | 2 | 250 | 22 | 273 | 8.23e-20 | 86.7 |
| MS.gene066728.t1 | AT1G63380 | 25.483 | 259 | 176 | 6 | 2 | 250 | 18 | 269 | 9.13e-20 | 86.3 |
| MS.gene066728.t1 | AT3G29250 | 29.297 | 256 | 160 | 7 | 1 | 247 | 44 | 287 | 1.20e-19 | 86.3 |
| MS.gene066728.t1 | AT2G47120 | 30.268 | 261 | 155 | 8 | 1 | 250 | 9 | 253 | 1.28e-19 | 85.5 |
| MS.gene066728.t1 | AT3G29250 | 29.297 | 256 | 160 | 7 | 1 | 247 | 46 | 289 | 1.57e-19 | 85.9 |
| MS.gene066728.t1 | AT2G47120 | 30.078 | 256 | 162 | 6 | 1 | 250 | 8 | 252 | 1.67e-19 | 85.1 |
| MS.gene066728.t1 | AT2G47130 | 29.572 | 257 | 157 | 7 | 1 | 247 | 8 | 250 | 5.17e-19 | 84.0 |
| MS.gene066728.t1 | AT2G29290 | 29.572 | 257 | 164 | 7 | 1 | 251 | 9 | 254 | 5.70e-19 | 84.0 |
| MS.gene066728.t1 | AT1G07440 | 29.344 | 259 | 159 | 7 | 2 | 251 | 15 | 258 | 8.06e-19 | 83.6 |
| MS.gene066728.t1 | AT5G10050 | 32.812 | 192 | 113 | 5 | 3 | 191 | 9 | 187 | 1.40e-18 | 83.2 |
| MS.gene066728.t1 | AT1G62610 | 25.097 | 259 | 177 | 6 | 2 | 250 | 16 | 267 | 1.86e-18 | 82.8 |
| MS.gene066728.t1 | AT1G62610 | 25.097 | 259 | 177 | 6 | 2 | 250 | 17 | 268 | 1.92e-18 | 82.8 |
| MS.gene066728.t1 | AT1G62610 | 25.097 | 259 | 177 | 6 | 2 | 250 | 18 | 269 | 2.14e-18 | 82.4 |
| MS.gene066728.t1 | AT5G18210 | 28.958 | 259 | 160 | 9 | 1 | 246 | 10 | 257 | 2.21e-18 | 82.4 |
| MS.gene066728.t1 | AT1G62610 | 25.806 | 248 | 167 | 6 | 2 | 239 | 22 | 262 | 2.35e-18 | 82.4 |
| MS.gene066728.t1 | AT3G03980 | 27.969 | 261 | 170 | 8 | 1 | 249 | 16 | 270 | 2.45e-18 | 82.4 |
| MS.gene066728.t1 | AT3G12800 | 28.897 | 263 | 158 | 9 | 1 | 247 | 12 | 261 | 2.66e-18 | 82.8 |
| MS.gene066728.t1 | AT3G55290 | 27.347 | 245 | 166 | 7 | 2 | 239 | 21 | 260 | 1.73e-17 | 80.1 |
| MS.gene066728.t1 | AT3G55290 | 27.347 | 245 | 166 | 7 | 2 | 239 | 20 | 259 | 1.79e-17 | 80.1 |
| MS.gene066728.t1 | AT2G29360 | 29.572 | 257 | 164 | 7 | 1 | 251 | 18 | 263 | 3.01e-17 | 79.3 |
| MS.gene066728.t1 | AT4G13180 | 25.581 | 258 | 175 | 7 | 1 | 250 | 15 | 263 | 3.10e-17 | 79.0 |
| MS.gene066728.t1 | AT2G17845 | 26.953 | 256 | 172 | 9 | 2 | 247 | 50 | 300 | 6.50e-17 | 79.0 |
| MS.gene066728.t1 | AT3G26760 | 26.136 | 264 | 165 | 10 | 1 | 247 | 38 | 288 | 1.22e-16 | 78.2 |
| MS.gene066728.t1 | AT4G03140 | 27.481 | 262 | 161 | 7 | 1 | 247 | 80 | 327 | 1.38e-16 | 78.2 |
| MS.gene066728.t1 | AT2G30670 | 29.885 | 261 | 158 | 9 | 1 | 251 | 9 | 254 | 2.20e-16 | 76.6 |
| MS.gene066728.t1 | AT5G50600 | 25.500 | 200 | 139 | 5 | 1 | 198 | 47 | 238 | 2.80e-16 | 77.4 |
| MS.gene066728.t1 | AT5G50700 | 25.500 | 200 | 139 | 5 | 1 | 198 | 47 | 238 | 2.80e-16 | 77.4 |
| MS.gene066728.t1 | AT2G29310 | 31.034 | 261 | 157 | 10 | 1 | 252 | 9 | 255 | 5.98e-16 | 75.5 |
| MS.gene066728.t1 | AT5G18210 | 28.279 | 244 | 152 | 8 | 1 | 231 | 10 | 243 | 7.97e-16 | 75.5 |
| MS.gene066728.t1 | AT2G29350 | 30.415 | 217 | 142 | 6 | 41 | 251 | 10 | 223 | 1.32e-15 | 73.9 |
| MS.gene066728.t1 | AT3G47350 | 24.206 | 252 | 160 | 7 | 1 | 233 | 46 | 285 | 4.49e-15 | 73.6 |
| MS.gene066728.t1 | AT2G29290 | 30.208 | 192 | 128 | 5 | 64 | 251 | 48 | 237 | 1.17e-14 | 71.6 |
| MS.gene066728.t1 | AT3G55310 | 26.016 | 246 | 168 | 6 | 2 | 239 | 20 | 259 | 1.40e-14 | 72.0 |
| MS.gene066728.t1 | AT3G47350 | 25.592 | 211 | 143 | 5 | 1 | 209 | 46 | 244 | 2.35e-14 | 71.6 |
| MS.gene066728.t1 | AT5G65205 | 28.947 | 190 | 119 | 5 | 3 | 189 | 10 | 186 | 2.90e-14 | 71.2 |
| MS.gene066728.t1 | AT2G29370 | 27.481 | 262 | 163 | 10 | 1 | 251 | 18 | 263 | 6.14e-14 | 70.1 |
| MS.gene066728.t1 | AT2G29310 | 35.632 | 174 | 103 | 6 | 84 | 252 | 84 | 253 | 7.48e-14 | 69.7 |
| MS.gene066728.t1 | AT2G29330 | 29.885 | 261 | 158 | 10 | 1 | 251 | 9 | 254 | 1.70e-13 | 68.6 |
| MS.gene066728.t1 | AT5G50690 | 29.534 | 193 | 122 | 7 | 1 | 189 | 47 | 229 | 4.34e-13 | 67.4 |
| MS.gene066728.t1 | AT5G50590 | 29.534 | 193 | 122 | 7 | 1 | 189 | 47 | 229 | 4.34e-13 | 67.4 |
| MS.gene066728.t1 | AT5G50690 | 29.534 | 193 | 122 | 7 | 1 | 189 | 47 | 229 | 4.83e-13 | 67.8 |
| MS.gene066728.t1 | AT5G50590 | 29.534 | 193 | 122 | 7 | 1 | 189 | 47 | 229 | 4.83e-13 | 67.8 |
| MS.gene066728.t1 | AT2G29340 | 27.843 | 255 | 171 | 6 | 1 | 251 | 9 | 254 | 5.06e-13 | 67.4 |
| MS.gene066728.t1 | AT2G29340 | 27.843 | 255 | 171 | 6 | 1 | 251 | 9 | 254 | 8.71e-13 | 67.0 |
| MS.gene066728.t1 | AT3G46170 | 25.131 | 191 | 134 | 4 | 2 | 187 | 29 | 215 | 1.99e-12 | 65.9 |
| MS.gene066728.t1 | AT3G47360 | 25.592 | 211 | 141 | 7 | 2 | 209 | 48 | 245 | 6.95e-12 | 64.7 |
| MS.gene066728.t1 | AT5G50770 | 26.702 | 191 | 126 | 6 | 1 | 187 | 47 | 227 | 2.91e-11 | 63.2 |
Find 62 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGGAAGCTGGTATTAA+TGG | 0.282146 | 7.1:+2838332 | None:intergenic |
| GGGTTGCACCTGGACCTATT+TGG | 0.290135 | 7.1:-2838358 | MS.gene066728:CDS |
| TTACCTGGTCATGAAGAAAT+AGG | 0.312741 | 7.1:+2838628 | None:intergenic |
| TGCAACTTGTTTGCATTAGA+AGG | 0.324302 | 7.1:-2838935 | MS.gene066728:CDS |
| TCCTTCCTTCATATGCTTCA+AGG | 0.325854 | 7.1:+2838523 | None:intergenic |
| CACCGTTAGGGTGGAGGACT+TGG | 0.340636 | 7.1:+2838189 | None:intergenic |
| GGTATTAATGGAGTCCAAAT+AGG | 0.375889 | 7.1:+2838344 | None:intergenic |
| CAATGCTCCTCTTACATAAC+TGG | 0.377326 | 7.1:-2838212 | MS.gene066728:CDS |
| GGCTGTCCAGCCCTCTTCAT+TGG | 0.397093 | 7.1:+2838275 | None:intergenic |
| GATGAGATCATCAATGCTTA+TGG | 0.400046 | 7.1:-2838758 | MS.gene066728:CDS |
| AAGGAGGGAGCAACCTCAAC+AGG | 0.426792 | 7.1:+2838254 | None:intergenic |
| GAGGAAAAGACTGCTCAGTT+TGG | 0.445973 | 7.1:-2838308 | MS.gene066728:CDS |
| AGCAAAGGTATAAGAGTGAA+TGG | 0.447089 | 7.1:-2838380 | MS.gene066728:CDS |
| GATTGACTACACGTCTACTA+AGG | 0.451933 | 7.1:-2838447 | MS.gene066728:CDS |
| ACTGGAGGTGACTCTGGAAT+AGG | 0.468261 | 7.1:-2838968 | MS.gene066728:CDS |
| GTGGTGACTGGAGGTGACTC+TGG | 0.474334 | 7.1:-2838974 | MS.gene066728:CDS |
| TATGTAAGAGGAGCATTGGT+TGG | 0.483625 | 7.1:+2838217 | None:intergenic |
| CTAAACACCCTCTCGAGTCT+TGG | 0.486019 | 7.1:+2838665 | None:intergenic |
| GGAAAGATAGCAGTGGTGAC+TGG | 0.488593 | 7.1:-2838986 | MS.gene066728:CDS |
| GCAAAGGTATAAGAGTGAAT+GGG | 0.489864 | 7.1:-2838379 | MS.gene066728:CDS |
| TCATCAAAACCAAGGTCAGC+TGG | 0.503738 | 7.1:+2838800 | None:intergenic |
| AGAGTGAATGGGGTTGCACC+TGG | 0.511342 | 7.1:-2838368 | MS.gene066728:CDS |
| GACTTGGCCAGTTATGTAAG+AGG | 0.522164 | 7.1:+2838205 | None:intergenic |
| TCTCCTATTTCTTCATGACC+AGG | 0.531066 | 7.1:-2838631 | MS.gene066728:intron |
| CATCAGTGAATGCATACAAA+GGG | 0.536432 | 7.1:-2838481 | MS.gene066728:CDS |
| CAGTTATGTAAGAGGAGCAT+TGG | 0.539760 | 7.1:+2838213 | None:intergenic |
| AGGTCAGCTGGTATAGCCAT+TGG | 0.542312 | 7.1:+2838812 | None:intergenic |
| TTATAAGTATATCACCGTTA+GGG | 0.544380 | 7.1:+2838177 | None:intergenic |
| TGCAATTCTCATCAAAACCA+AGG | 0.551588 | 7.1:+2838792 | None:intergenic |
| GCCTTGAAGCATATGAAGGA+AGG | 0.554851 | 7.1:-2838524 | MS.gene066728:CDS |
| AATGGAGTCCAAATAGGTCC+AGG | 0.558031 | 7.1:+2838350 | None:intergenic |
| TCACTTCAGCTTGTGAGCAA+AGG | 0.563107 | 7.1:-2838395 | MS.gene066728:CDS |
| GTATATCACCGTTAGGGTGG+AGG | 0.563677 | 7.1:+2838183 | None:intergenic |
| TGATGAGAATTGCAAAAGAG+TGG | 0.563781 | 7.1:-2838783 | MS.gene066728:CDS |
| ATGGCTATACCAGCTGACCT+TGG | 0.565262 | 7.1:-2838809 | MS.gene066728:CDS |
| GATGTGCCAATGAAGAGGGC+TGG | 0.569113 | 7.1:-2838281 | MS.gene066728:CDS |
| TGCAAATGCTAAAGATCCAA+TGG | 0.571331 | 7.1:-2838828 | MS.gene066728:CDS |
| GTCATGAAGACAAGGACGCA+AGG | 0.575782 | 7.1:-2838883 | MS.gene066728:CDS |
| GCATGCCTTGAAGCATATGA+AGG | 0.582221 | 7.1:-2838528 | MS.gene066728:CDS |
| GTATGAGTGTGGTTCAGTTG+AGG | 0.586482 | 7.1:-2838699 | MS.gene066728:CDS |
| AATACCAGCTTCCTTCAATG+AGG | 0.587076 | 7.1:-2838327 | MS.gene066728:CDS |
| TAAGTATATCACCGTTAGGG+TGG | 0.587839 | 7.1:+2838180 | None:intergenic |
| CAAAGGTATAAGAGTGAATG+GGG | 0.588385 | 7.1:-2838378 | MS.gene066728:CDS |
| ATTGACTACACGTCTACTAA+GGG | 0.600043 | 7.1:-2838446 | MS.gene066728:CDS |
| GTCTACTAAGGGTGCCATTG+TGG | 0.601115 | 7.1:-2838435 | MS.gene066728:CDS |
| GGCCAAGTCCTCCACCCTAA+CGG | 0.603755 | 7.1:-2838191 | MS.gene066728:intron |
| TGATGAACCAAGACTCGAGA+GGG | 0.616091 | 7.1:-2838672 | MS.gene066728:CDS |
| TCATGAAGACAAGGACGCAA+GGG | 0.631777 | 7.1:-2838882 | MS.gene066728:CDS |
| ACATCAGTGAATGCATACAA+AGG | 0.633175 | 7.1:-2838482 | MS.gene066728:CDS |
| GAAGCAAGAAACACAAAGGA+GGG | 0.642980 | 7.1:+2838239 | None:intergenic |
| TGCCCTTGTAAAAGCCACAA+TGG | 0.645018 | 7.1:+2838421 | None:intergenic |
| GAGGGCTGGACAGCCTGTTG+AGG | 0.646836 | 7.1:-2838267 | MS.gene066728:CDS |
| GGAAGCAAGAAACACAAAGG+AGG | 0.652897 | 7.1:+2838238 | None:intergenic |
| TAGTGATGTGCCAATGAAGA+GGG | 0.666583 | 7.1:-2838285 | MS.gene066728:CDS |
| AAGATAGCAGTGGTGACTGG+AGG | 0.668759 | 7.1:-2838983 | MS.gene066728:CDS |
| GTAGTGATGTGCCAATGAAG+AGG | 0.682060 | 7.1:-2838286 | MS.gene066728:CDS |
| TGTGAAGGGTCATGAAGACA+AGG | 0.693670 | 7.1:-2838891 | MS.gene066728:CDS |
| GTTGGAAGCAAGAAACACAA+AGG | 0.702058 | 7.1:+2838235 | None:intergenic |
| TTGATGAACCAAGACTCGAG+AGG | 0.710937 | 7.1:-2838673 | MS.gene066728:CDS |
| CACCATCTATGCATTCACAA+CGG | 0.721804 | 7.1:+2838073 | None:intergenic |
| GCAGCTGAGCAGTATGAGTG+TGG | 0.735028 | 7.1:-2838710 | MS.gene066728:CDS |
| CACATATGTGAAAATCACAG+TGG | 0.762212 | 7.1:+2838910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATTAAATTAGATAAAT+CGG | - | chr7.1:2838469-2838488 | MS.gene066728:CDS | 10.0% |
| !! | TTATCTAATTTAATTAAGAG+TGG | + | chr7.1:2838467-2838486 | None:intergenic | 15.0% |
| !!! | CTTTTCATTTTTTATTTTTC+AGG | - | chr7.1:2838964-2838983 | MS.gene066728:CDS | 15.0% |
| !!! | TTCATTTTTTATTTTTCAGG+AGG | - | chr7.1:2838967-2838986 | MS.gene066728:CDS | 20.0% |
| ! | ATATTTGTTCACACATTCTA+TGG | - | chr7.1:2838926-2838945 | MS.gene066728:CDS | 25.0% |
| ! | CACACTTGATATGTTAAAAA+TGG | - | chr7.1:2838207-2838226 | MS.gene066728:CDS | 25.0% |
| ! | TGACTAACTATTTGTGTAAT+AGG | - | chr7.1:2838515-2838534 | MS.gene066728:CDS | 25.0% |
| ! | TGATATGTTAAAAATGGCTA+AGG | - | chr7.1:2838213-2838232 | MS.gene066728:CDS | 25.0% |
| ! | TTATAAGTATATCACCGTTA+GGG | + | chr7.1:2838891-2838910 | None:intergenic | 25.0% |
| ! | TTTATAAGTATATCACCGTT+AGG | + | chr7.1:2838892-2838911 | None:intergenic | 25.0% |
| !!! | GATGTTATTTCATGAATTTG+GGG | - | chr7.1:2838491-2838510 | MS.gene066728:CDS | 25.0% |
| !!! | GGATGTTATTTCATGAATTT+GGG | - | chr7.1:2838490-2838509 | MS.gene066728:CDS | 25.0% |
| ATTAAGAGTGGTTTATTACC+TGG | + | chr7.1:2838455-2838474 | None:intergenic | 30.0% | |
| ! | GTGATTTTCACATATGTGAA+GGG | - | chr7.1:2838160-2838179 | MS.gene066728:intron | 30.0% |
| ! | TGTGATTTTCACATATGTGA+AGG | - | chr7.1:2838159-2838178 | MS.gene066728:intron | 30.0% |
| !! | CGGATGTTATTTCATGAATT+TGG | - | chr7.1:2838489-2838508 | MS.gene066728:CDS | 30.0% |
| ACATCAGTGAATGCATACAA+AGG | - | chr7.1:2838583-2838602 | MS.gene066728:intron | 35.0% | |
| ATTGACTACACGTCTACTAA+GGG | - | chr7.1:2838619-2838638 | MS.gene066728:intron | 35.0% | |
| CACATATGTGAAAATCACAG+TGG | + | chr7.1:2838158-2838177 | None:intergenic | 35.0% | |
| CATCAGTGAATGCATACAAA+GGG | - | chr7.1:2838584-2838603 | MS.gene066728:intron | 35.0% | |
| GATGAGATCATCAATGCTTA+TGG | - | chr7.1:2838307-2838326 | MS.gene066728:CDS | 35.0% | |
| GGTATTAATGGAGTCCAAAT+AGG | + | chr7.1:2838724-2838743 | None:intergenic | 35.0% | |
| TGATGAGAATTGCAAAAGAG+TGG | - | chr7.1:2838282-2838301 | MS.gene066728:CDS | 35.0% | |
| TGCAAATGCTAAAGATCCAA+TGG | - | chr7.1:2838237-2838256 | MS.gene066728:CDS | 35.0% | |
| TGCAATTCTCATCAAAACCA+AGG | + | chr7.1:2838276-2838295 | None:intergenic | 35.0% | |
| TTACCTGGTCATGAAGAAAT+AGG | + | chr7.1:2838440-2838459 | None:intergenic | 35.0% | |
| TTGAAGGAAGCTGGTATTAA+TGG | + | chr7.1:2838736-2838755 | None:intergenic | 35.0% | |
| ! | AGCAAAGGTATAAGAGTGAA+TGG | - | chr7.1:2838685-2838704 | MS.gene066728:CDS | 35.0% |
| ! | CAAAGGTATAAGAGTGAATG+GGG | - | chr7.1:2838687-2838706 | MS.gene066728:CDS | 35.0% |
| ! | GCAAAGGTATAAGAGTGAAT+GGG | - | chr7.1:2838686-2838705 | MS.gene066728:CDS | 35.0% |
| ! | TGCAACTTGTTTGCATTAGA+AGG | - | chr7.1:2838130-2838149 | MS.gene066728:intron | 35.0% |
| AATACCAGCTTCCTTCAATG+AGG | - | chr7.1:2838738-2838757 | MS.gene066728:CDS | 40.0% | |
| CAATGCTCCTCTTACATAAC+TGG | - | chr7.1:2838853-2838872 | MS.gene066728:CDS | 40.0% | |
| GAAGCAAGAAACACAAAGGA+GGG | + | chr7.1:2838829-2838848 | None:intergenic | 40.0% | |
| GATTGACTACACGTCTACTA+AGG | - | chr7.1:2838618-2838637 | MS.gene066728:intron | 40.0% | |
| GTTGGAAGCAAGAAACACAA+AGG | + | chr7.1:2838833-2838852 | None:intergenic | 40.0% | |
| TAAGTATATCACCGTTAGGG+TGG | + | chr7.1:2838888-2838907 | None:intergenic | 40.0% | |
| TAGTGATGTGCCAATGAAGA+GGG | - | chr7.1:2838780-2838799 | MS.gene066728:CDS | 40.0% | |
| TCCTTCCTTCATATGCTTCA+AGG | + | chr7.1:2838545-2838564 | None:intergenic | 40.0% | |
| ! | AGCAGTCTTTTCCTCATTGA+AGG | + | chr7.1:2838752-2838771 | None:intergenic | 40.0% |
| ! | CAGTTATGTAAGAGGAGCAT+TGG | + | chr7.1:2838855-2838874 | None:intergenic | 40.0% |
| ! | TCTCCTATTTCTTCATGACC+AGG | - | chr7.1:2838434-2838453 | MS.gene066728:CDS | 40.0% |
| ! | TGCCATTGTGGCTTTTACAA+GGG | - | chr7.1:2838642-2838661 | MS.gene066728:CDS | 40.0% |
| ! | TTTTCCTCATTGAAGGAAGC+TGG | + | chr7.1:2838745-2838764 | None:intergenic | 40.0% |
| !! | TATGTAAGAGGAGCATTGGT+TGG | + | chr7.1:2838851-2838870 | None:intergenic | 40.0% |
| AATGGAGTCCAAATAGGTCC+AGG | + | chr7.1:2838718-2838737 | None:intergenic | 45.0% | |
| AGGAACCGTTGTGAATGCAT+AGG | - | chr7.1:2838987-2839006 | MS.gene066728:CDS | 45.0% | |
| GACTTGGCCAGTTATGTAAG+AGG | + | chr7.1:2838863-2838882 | None:intergenic | 45.0% | |
| GAGGAAAAGACTGCTCAGTT+TGG | - | chr7.1:2838757-2838776 | MS.gene066728:CDS | 45.0% | |
| GCATGCCTTGAAGCATATGA+AGG | - | chr7.1:2838537-2838556 | MS.gene066728:intron | 45.0% | |
| GCCTTGAAGCATATGAAGGA+AGG | - | chr7.1:2838541-2838560 | MS.gene066728:intron | 45.0% | |
| GGAACCGTTGTGAATGCATA+GGG | - | chr7.1:2838988-2839007 | MS.gene066728:CDS | 45.0% | |
| GGAAGCAAGAAACACAAAGG+AGG | + | chr7.1:2838830-2838849 | None:intergenic | 45.0% | |
| GTAGTGATGTGCCAATGAAG+AGG | - | chr7.1:2838779-2838798 | MS.gene066728:CDS | 45.0% | |
| GTATGAGTGTGGTTCAGTTG+AGG | - | chr7.1:2838366-2838385 | MS.gene066728:CDS | 45.0% | |
| TCACTTCAGCTTGTGAGCAA+AGG | - | chr7.1:2838670-2838689 | MS.gene066728:CDS | 45.0% | |
| TCATCAAAACCAAGGTCAGC+TGG | + | chr7.1:2838268-2838287 | None:intergenic | 45.0% | |
| TCATGAAGACAAGGACGCAA+GGG | - | chr7.1:2838183-2838202 | MS.gene066728:intron | 45.0% | |
| TGATGAACCAAGACTCGAGA+GGG | - | chr7.1:2838393-2838412 | MS.gene066728:CDS | 45.0% | |
| TGCCCTTGTAAAAGCCACAA+TGG | + | chr7.1:2838647-2838666 | None:intergenic | 45.0% | |
| TGTGAAGGGTCATGAAGACA+AGG | - | chr7.1:2838174-2838193 | MS.gene066728:intron | 45.0% | |
| TTGATGAACCAAGACTCGAG+AGG | - | chr7.1:2838392-2838411 | MS.gene066728:CDS | 45.0% | |
| !! | GTGCCATTGTGGCTTTTACA+AGG | - | chr7.1:2838641-2838660 | MS.gene066728:CDS | 45.0% |
| AAGATAGCAGTGGTGACTGG+AGG | - | chr7.1:2838082-2838101 | MS.gene066728:CDS | 50.0% | |
| AGGTCAGCTGGTATAGCCAT+TGG | + | chr7.1:2838256-2838275 | None:intergenic | 50.0% | |
| ATGGCTATACCAGCTGACCT+TGG | - | chr7.1:2838256-2838275 | MS.gene066728:CDS | 50.0% | |
| CTAAACACCCTCTCGAGTCT+TGG | + | chr7.1:2838403-2838422 | None:intergenic | 50.0% | |
| GGAAAGATAGCAGTGGTGAC+TGG | - | chr7.1:2838079-2838098 | MS.gene066728:CDS | 50.0% | |
| GTATATCACCGTTAGGGTGG+AGG | + | chr7.1:2838885-2838904 | None:intergenic | 50.0% | |
| GTCATGAAGACAAGGACGCA+AGG | - | chr7.1:2838182-2838201 | MS.gene066728:intron | 50.0% | |
| !! | ACTGGAGGTGACTCTGGAAT+AGG | - | chr7.1:2838097-2838116 | MS.gene066728:intron | 50.0% |
| !! | GTCTACTAAGGGTGCCATTG+TGG | - | chr7.1:2838630-2838649 | MS.gene066728:intron | 50.0% |
| AAGGAGGGAGCAACCTCAAC+AGG | + | chr7.1:2838814-2838833 | None:intergenic | 55.0% | |
| AGAGTGAATGGGGTTGCACC+TGG | - | chr7.1:2838697-2838716 | MS.gene066728:CDS | 55.0% | |
| GATGTGCCAATGAAGAGGGC+TGG | - | chr7.1:2838784-2838803 | MS.gene066728:CDS | 55.0% | |
| GCAGCTGAGCAGTATGAGTG+TGG | - | chr7.1:2838355-2838374 | MS.gene066728:CDS | 55.0% | |
| GGGTTGCACCTGGACCTATT+TGG | - | chr7.1:2838707-2838726 | MS.gene066728:CDS | 55.0% | |
| CACCGTTAGGGTGGAGGACT+TGG | + | chr7.1:2838879-2838898 | None:intergenic | 60.0% | |
| GGCCAAGTCCTCCACCCTAA+CGG | - | chr7.1:2838874-2838893 | MS.gene066728:CDS | 60.0% | |
| GGCTGTCCAGCCCTCTTCAT+TGG | + | chr7.1:2838793-2838812 | None:intergenic | 60.0% | |
| GTGGTGACTGGAGGTGACTC+TGG | - | chr7.1:2838091-2838110 | MS.gene066728:intron | 60.0% | |
| GAGGGCTGGACAGCCTGTTG+AGG | - | chr7.1:2838798-2838817 | MS.gene066728:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 2838079 | 2839008 | 2838079 | ID=MS.gene066728 |
| chr7.1 | mRNA | 2838079 | 2839008 | 2838079 | ID=MS.gene066728.t1;Parent=MS.gene066728 |
| chr7.1 | exon | 2838632 | 2839008 | 2838632 | ID=MS.gene066728.t1.exon1;Parent=MS.gene066728.t1 |
| chr7.1 | CDS | 2838632 | 2839008 | 2838632 | ID=cds.MS.gene066728.t1;Parent=MS.gene066728.t1 |
| chr7.1 | exon | 2838192 | 2838550 | 2838192 | ID=MS.gene066728.t1.exon2;Parent=MS.gene066728.t1 |
| chr7.1 | CDS | 2838192 | 2838550 | 2838192 | ID=cds.MS.gene066728.t1;Parent=MS.gene066728.t1 |
| chr7.1 | exon | 2838079 | 2838101 | 2838079 | ID=MS.gene066728.t1.exon3;Parent=MS.gene066728.t1 |
| chr7.1 | CDS | 2838079 | 2838101 | 2838079 | ID=cds.MS.gene066728.t1;Parent=MS.gene066728.t1 |
| Gene Sequence |
| Protein sequence |
