AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80360.t1 MTR_6g035395 88.506 261 17 1 2 262 1 248 9.61e-164 453
MS.gene80360.t1 MTR_7g110140 78.210 257 56 0 1 257 1 257 6.33e-147 412
MS.gene80360.t1 MTR_7g110130 69.767 258 77 1 1 257 1 258 2.54e-127 362
MS.gene80360.t1 MTR_2g090165 67.969 256 82 0 1 256 1 256 6.46e-126 358
MS.gene80360.t1 MTR_7g110160 63.035 257 77 1 1 257 1 239 3.63e-109 315
MS.gene80360.t1 MTR_6g023590 51.793 251 119 2 5 253 12 262 5.46e-86 257
MS.gene80360.t1 MTR_6g023950 51.383 253 121 2 5 255 12 264 7.01e-82 246
MS.gene80360.t1 MTR_6g023610 51.600 250 119 2 5 252 12 261 2.27e-81 246
MS.gene80360.t1 MTR_6g023910 52.400 250 117 2 5 252 12 261 7.19e-81 244
MS.gene80360.t1 MTR_4g052350 52.157 255 117 3 4 257 12 262 1.40e-80 244
MS.gene80360.t1 MTR_4g052340 50.588 255 121 3 4 257 12 262 7.96e-80 242
MS.gene80360.t1 MTR_6g023990 50.199 251 123 2 5 253 13 263 1.89e-79 241
MS.gene80360.t1 MTR_6g023600 51.394 251 120 2 5 253 12 262 2.48e-79 240
MS.gene80360.t1 MTR_4g052320 50.787 254 121 3 5 257 7 257 4.18e-77 234
MS.gene80360.t1 MTR_7g071680 48.175 274 120 4 4 257 27 298 1.63e-76 234
MS.gene80360.t1 MTR_4g052300 50.394 254 121 3 5 257 7 256 1.64e-75 230
MS.gene80360.t1 MTR_6g023600 50.598 251 116 3 5 253 12 256 2.79e-74 227
MS.gene80360.t1 MTR_7g105460 47.431 253 131 2 5 256 12 263 7.69e-74 226
MS.gene80360.t1 MTR_7g083870 48.276 261 126 5 4 257 33 291 2.35e-70 218
MS.gene80360.t1 MTR_7g107670 45.247 263 134 6 4 259 31 290 2.60e-69 216
MS.gene80360.t1 MTR_7g105580 45.059 253 121 3 4 256 6 240 1.75e-63 199
MS.gene80360.t1 MTR_4g078630 42.697 267 142 5 4 262 17 280 6.79e-62 196
MS.gene80360.t1 MTR_3g020670 45.660 265 134 5 4 259 14 277 4.17e-60 192
MS.gene80360.t1 MTR_7g105590 47.568 185 95 2 4 187 6 189 5.91e-53 171
MS.gene80360.t1 MTR_3g113870 42.308 182 102 3 14 194 29 208 5.34e-44 149
MS.gene80360.t1 MTR_7g105570 36.905 252 106 3 6 256 21 220 1.86e-42 145
MS.gene80360.t1 MTR_4g084800 50.382 131 64 1 2 131 9 139 2.90e-39 134
MS.gene80360.t1 MTR_4g058840 28.517 263 159 7 6 251 11 261 3.31e-22 93.2
MS.gene80360.t1 MTR_4g058820 28.517 263 159 7 6 251 11 261 3.31e-22 93.2
MS.gene80360.t1 MTR_3g085740 29.961 257 161 9 4 252 73 318 1.11e-21 92.4
MS.gene80360.t1 MTR_1g051165 26.236 263 180 6 4 254 12 272 1.88e-21 91.3
MS.gene80360.t1 MTR_4g058810 27.170 265 166 8 6 254 11 264 6.33e-18 81.3
MS.gene80360.t1 MTR_4g132850 29.134 254 169 7 2 252 3 248 1.26e-17 80.1
MS.gene80360.t1 MTR_8g442750 30.534 262 157 10 6 252 14 265 1.75e-17 80.5
MS.gene80360.t1 MTR_7g113650 28.794 257 166 6 5 251 39 288 2.28e-17 80.1
MS.gene80360.t1 MTR_1196s0010 32.283 254 149 9 7 252 275 513 5.54e-17 80.5
MS.gene80360.t1 MTR_1g082760 28.623 276 142 9 5 251 39 288 1.59e-16 77.8
MS.gene80360.t1 MTR_4g097510 31.148 183 120 5 7 187 3 181 4.13e-16 76.6
MS.gene80360.t1 MTR_7g105560 60.345 58 23 0 2 59 9 66 9.49e-16 72.8
MS.gene80360.t1 MTR_4g064887 25.969 258 177 7 3 254 12 261 9.79e-16 75.1
MS.gene80360.t1 MTR_3g087850 31.183 186 120 5 4 187 24 203 3.82e-15 73.9
MS.gene80360.t1 MTR_3g068085 29.644 253 168 10 6 254 15 261 1.19e-14 72.4
MS.gene80360.t1 MTR_4g131740 25.573 262 169 8 5 251 39 289 1.26e-14 72.4
MS.gene80360.t1 MTR_2g022600 31.416 226 138 7 12 231 39 253 1.82e-14 72.8
MS.gene80360.t1 MTR_7g094520 28.740 254 169 7 6 252 11 259 7.06e-14 70.1
MS.gene80360.t1 MTR_8g096580 30.102 196 130 4 4 195 43 235 1.42e-13 69.7
MS.gene80360.t1 MTR_3g087860 32.716 162 100 5 28 187 34 188 4.11e-13 68.2
MS.gene80360.t1 MTR_7g063360 28.462 260 172 9 3 254 13 266 6.90e-13 67.0
MS.gene80360.t1 MTR_4g086400 24.806 258 159 7 8 248 6 245 7.96e-13 68.2
MS.gene80360.t1 MTR_7g063390 28.077 260 173 8 3 254 13 266 2.33e-12 65.9
MS.gene80360.t1 MTR_7g094510 25.769 260 179 7 1 252 1 254 7.09e-12 64.3
MS.gene80360.t1 MTR_7g063320 27.843 255 176 7 3 252 12 263 1.57e-11 63.2
MS.gene80360.t1 MTR_1g007800 29.050 179 119 4 82 256 84 258 9.10e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80360.t1 AT2G47140 62.353 255 96 0 1 255 1 255 1.28e-115 332
MS.gene80360.t1 AT3G29250 62.353 255 96 0 1 255 1 255 9.95e-109 315
MS.gene80360.t1 AT3G29250 62.205 254 96 0 2 255 40 293 1.83e-108 315
MS.gene80360.t1 AT3G29250 62.353 255 96 0 1 255 37 291 3.89e-108 315
MS.gene80360.t1 AT3G29260 59.608 255 102 1 1 255 1 254 1.57e-103 301
MS.gene80360.t1 AT2G47130 58.140 258 107 1 1 258 1 257 3.53e-102 298
MS.gene80360.t1 AT2G47120 56.863 255 108 2 1 255 1 253 1.66e-98 289
MS.gene80360.t1 AT2G47120 57.371 251 105 2 5 255 6 254 1.89e-98 288
MS.gene80360.t1 AT3G51680 47.985 273 126 3 1 257 27 299 2.61e-75 231
MS.gene80360.t1 AT1G52340 45.522 268 133 6 4 259 16 282 2.81e-64 202
MS.gene80360.t1 AT4G03140 43.295 261 140 5 4 258 76 334 1.25e-63 202
MS.gene80360.t1 AT3G26760 41.667 264 143 4 4 258 34 295 1.45e-63 201
MS.gene80360.t1 AT3G26770 42.023 257 140 5 4 253 39 293 3.38e-61 195
MS.gene80360.t1 AT3G42960 43.243 259 135 4 4 253 6 261 1.03e-53 175
MS.gene80360.t1 AT2G47150 37.945 253 104 6 6 258 1 200 2.93e-40 138
MS.gene80360.t1 AT4G05530 32.296 257 157 7 2 252 5 250 2.16e-18 82.4
MS.gene80360.t1 AT2G17845 27.941 272 160 10 6 255 47 304 4.42e-17 79.7
MS.gene80360.t1 AT2G29150 31.679 262 156 11 3 254 13 261 7.31e-17 78.6
MS.gene80360.t1 AT2G30670 28.516 256 173 7 3 254 4 253 2.03e-16 77.0
MS.gene80360.t1 AT1G07450 28.794 257 170 8 3 254 5 253 2.20e-16 77.0
MS.gene80360.t1 AT2G29340 28.627 255 174 6 3 254 4 253 2.42e-16 77.0
MS.gene80360.t1 AT3G55290 27.715 267 162 8 6 254 17 270 2.70e-16 77.0
MS.gene80360.t1 AT3G55290 27.715 267 162 8 6 254 18 271 2.74e-16 77.0
MS.gene80360.t1 AT2G29340 28.627 255 174 6 3 254 4 253 3.43e-16 77.0
MS.gene80360.t1 AT1G63380 26.966 267 165 9 6 254 22 276 9.28e-16 75.5
MS.gene80360.t1 AT1G63380 26.966 267 165 9 6 254 17 271 9.49e-16 75.5
MS.gene80360.t1 AT1G63380 26.966 267 165 9 6 254 15 269 9.65e-16 75.5
MS.gene80360.t1 AT1G63380 26.966 267 165 9 6 254 19 273 1.02e-15 75.5
MS.gene80360.t1 AT1G07440 29.845 258 166 9 3 254 9 257 1.11e-15 75.1
MS.gene80360.t1 AT2G29370 30.827 266 154 11 3 254 13 262 1.18e-15 75.1
MS.gene80360.t1 AT2G29310 28.016 257 173 7 3 254 4 253 1.20e-15 75.1
MS.gene80360.t1 AT3G55310 28.030 264 159 8 6 251 17 267 2.80e-15 74.3
MS.gene80360.t1 AT1G24360 27.799 259 168 10 4 254 72 319 2.85e-15 74.7
MS.gene80360.t1 AT1G62610 26.641 259 170 7 6 251 14 265 2.91e-15 73.9
MS.gene80360.t1 AT1G62610 26.641 259 170 7 6 251 15 266 3.15e-15 73.9
MS.gene80360.t1 AT1G62610 26.641 259 170 7 6 251 19 270 3.36e-15 73.9
MS.gene80360.t1 AT1G62610 26.641 259 170 7 6 251 13 264 3.40e-15 73.9
MS.gene80360.t1 AT2G29360 30.075 266 156 11 3 254 13 262 3.47e-15 73.9
MS.gene80360.t1 AT3G12800 29.389 262 165 9 6 254 10 264 8.67e-15 73.2
MS.gene80360.t1 AT2G29330 28.405 257 172 7 3 254 4 253 9.21e-15 72.4
MS.gene80360.t1 AT5G18210 30.620 258 162 8 6 252 8 259 9.51e-15 72.4
MS.gene80360.t1 AT2G29290 30.337 267 154 11 3 254 4 253 1.37e-14 72.0
MS.gene80360.t1 AT5G65205 30.159 189 122 6 7 192 7 188 3.04e-14 71.2
MS.gene80360.t1 AT5G06060 28.626 262 165 9 3 254 6 255 4.55e-14 70.5
MS.gene80360.t1 AT5G19200 31.925 213 131 6 12 217 41 246 4.68e-14 71.2
MS.gene80360.t1 AT3G46170 25.573 262 168 7 6 251 26 276 4.81e-14 70.9
MS.gene80360.t1 AT3G06060 30.180 222 143 5 2 217 33 248 6.04e-14 70.9
MS.gene80360.t1 AT3G06060 30.180 222 143 5 2 217 50 265 6.70e-14 70.9
MS.gene80360.t1 AT5G10050 29.101 189 124 6 7 192 6 187 6.84e-14 70.1
MS.gene80360.t1 AT1G54870 27.203 261 165 7 5 251 81 330 7.60e-14 70.9
MS.gene80360.t1 AT1G54870 27.203 261 165 7 5 251 83 332 8.88e-14 70.5
MS.gene80360.t1 AT4G13180 30.233 258 164 7 6 254 13 263 1.09e-13 69.3
MS.gene80360.t1 AT5G50600 29.474 190 128 4 1 187 40 226 5.21e-13 68.2
MS.gene80360.t1 AT5G50700 29.474 190 128 4 1 187 40 226 5.21e-13 68.2
MS.gene80360.t1 AT3G05260 25.670 261 174 8 5 254 36 287 1.26e-12 66.6
MS.gene80360.t1 AT1G49670 28.311 219 126 6 11 209 9 216 1.37e-12 67.8
MS.gene80360.t1 AT1G49670 28.311 219 126 6 11 209 9 216 1.44e-12 67.8
MS.gene80360.t1 AT5G50770 30.000 190 127 3 1 187 40 226 1.62e-12 67.0
MS.gene80360.t1 AT2G29320 29.231 260 161 9 6 254 13 260 6.36e-12 64.7
MS.gene80360.t1 AT2G29290 30.415 217 130 8 42 254 37 236 7.15e-12 63.9
MS.gene80360.t1 AT3G04000 27.863 262 167 7 6 251 14 269 9.42e-12 63.9
MS.gene80360.t1 AT2G29340 28.571 196 135 4 3 195 4 197 1.15e-11 62.8
MS.gene80360.t1 AT2G29340 28.571 196 135 4 3 195 4 197 1.15e-11 62.8
MS.gene80360.t1 AT1G10310 28.235 170 116 3 9 175 18 184 1.85e-11 62.8
MS.gene80360.t1 AT5G18210 30.579 242 151 8 6 236 8 243 3.26e-11 62.4
MS.gene80360.t1 AT3G03980 26.718 262 171 7 6 252 14 269 3.56e-11 62.4
MS.gene80360.t1 AT2G29310 28.283 198 133 5 3 195 4 197 8.45e-11 60.5

Find 54 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATCAAAACATGCTCTTT+TGG 0.245464 6.3:-27682721 MS.gene80360:CDS
TTACATCAGTGGTCATAATT+TGG 0.260914 6.3:-27682478 MS.gene80360:CDS
GTGAAGTTGTTCGTCGAAAA+TGG 0.282900 6.3:-27683122 MS.gene80360:CDS
CTTGAACATATTTAGGTTAG+AGG 0.302106 6.3:-27683195 MS.gene80360:intron
TTCAGCAATGCCGGAATATT+AGG 0.326721 6.3:-27682933 MS.gene80360:CDS
GGAAGCAATCGTAAGTTCTA+AGG 0.328845 6.3:-27682577 MS.gene80360:CDS
GTAGACATTCAAGATGAATT+AGG 0.344204 6.3:-27683083 MS.gene80360:CDS
GTTAATAGTGTTTCCCCTTT+CGG 0.349469 6.3:-27682651 MS.gene80360:CDS
TGTAGTGAACTTGGTGGTTA+TGG 0.359732 6.3:-27682681 MS.gene80360:CDS
ACGATTGCTTCCACAACTTC+AGG 0.376122 6.3:+27682588 None:intergenic
CGGAATATTAGGCTCTTCAT+TGG 0.389239 6.3:-27682922 MS.gene80360:CDS
ACAATAGATATAAATGTTGT+TGG 0.393513 6.3:-27682864 MS.gene80360:CDS
ACTGGTGCAGCCAGTGGAAT+TGG 0.394448 6.3:-27683155 MS.gene80360:CDS
CAATGAAGAGCCTAATATTC+CGG 0.395683 6.3:+27682923 None:intergenic
GGTCATAATTTGGTGGTTGA+TGG 0.405463 6.3:-27682468 MS.gene80360:CDS
CATACCATCATTGCGACGTT+AGG 0.415601 6.3:-27683022 MS.gene80360:CDS
CATCAAGTTGTAGCTTCAAT+TGG 0.434872 6.3:-27683059 MS.gene80360:CDS
GCAGCTTCTACCGGTGGAAC+TGG 0.443498 6.3:-27682759 MS.gene80360:CDS
TCTGAAGGGTGTTGTGTTGA+AGG 0.448691 6.3:-27682550 MS.gene80360:CDS
GCTAGTGTGGCAGCTTCTAC+CGG 0.458297 6.3:-27682768 MS.gene80360:CDS
GGTTCATAATATAAAACAAA+TGG 0.461191 6.3:-27682433 MS.gene80360:CDS
CATCCCTAACGTCGCAATGA+TGG 0.461260 6.3:+27683018 None:intergenic
GGAATATTAGGCTCTTCATT+GGG 0.481611 6.3:-27682921 MS.gene80360:CDS
AGAAACTGTTAATTTCACTT+TGG 0.484629 6.3:-27682982 MS.gene80360:CDS
ATACCATCATTGCGACGTTA+GGG 0.497406 6.3:-27683021 MS.gene80360:CDS
GATATCATGTTCAGCAATGC+CGG 0.499855 6.3:-27682942 MS.gene80360:CDS
TTGAACATATTTAGGTTAGA+GGG 0.503852 6.3:-27683194 MS.gene80360:intron
CATAATTTGGTGGTTGATGG+TGG 0.514887 6.3:-27682465 MS.gene80360:CDS
CAAAATAGAGCCTGAAGTTG+TGG 0.519380 6.3:-27682598 MS.gene80360:CDS
CATCAGTGGTCATAATTTGG+TGG 0.524756 6.3:-27682475 MS.gene80360:CDS
TAAGCACGCTGCTCGTGCTA+TGG 0.527417 6.3:-27682826 MS.gene80360:CDS
TGCCTCTTTACCAATTCCAC+TGG 0.527579 6.3:+27683145 None:intergenic
AAGTTCTAAGGGTAATCTGA+AGG 0.564554 6.3:-27682565 MS.gene80360:CDS
GAAGCAATCGTAAGTTCTAA+GGG 0.567856 6.3:-27682576 MS.gene80360:CDS
AAGGTGTTGCAACTCCGAAA+GGG 0.569228 6.3:+27682637 None:intergenic
AAAGGTGTTGCAACTCCGAA+AGG 0.570543 6.3:+27682636 None:intergenic
CACCGTTGATGATGAAGCAA+AGG 0.574370 6.3:-27683354 None:intergenic
GATGAAGCTGTTTACATCAG+TGG 0.575837 6.3:-27682489 MS.gene80360:CDS
ACCACTAGGACCAGTTCCAC+CGG 0.583291 6.3:+27682749 None:intergenic
TTGATCGGTGCACATGCGAA+AGG 0.583987 6.3:+27682618 None:intergenic
AGCCAGTGGAATTGGTAAAG+AGG 0.589227 6.3:-27683147 MS.gene80360:CDS
AGAGCAGCATGTAGTGAACT+TGG 0.597108 6.3:-27682690 MS.gene80360:CDS
GGTAAGATAGCAATCATCAC+TGG 0.605060 6.3:-27683173 MS.gene80360:CDS
ATCATCACTGGTGCAGCCAG+TGG 0.607127 6.3:-27683161 MS.gene80360:CDS
AGTTCTAAGGGTAATCTGAA+GGG 0.611602 6.3:-27682564 MS.gene80360:CDS
GATCATATGCACCGCTAGTG+TGG 0.612441 6.3:-27682781 MS.gene80360:CDS
ACCGGTGGAACTGGTCCTAG+TGG 0.613286 6.3:-27682750 MS.gene80360:CDS
GCAGCATGTAGTGAACTTGG+TGG 0.616204 6.3:-27682687 MS.gene80360:CDS
GGTTGATGGTGGCTTCTCTG+TGG 0.628769 6.3:-27682454 MS.gene80360:CDS
AGGTGTTGCAACTCCGAAAG+GGG 0.633333 6.3:+27682638 None:intergenic
TTTGATGCAGTATAACCACT+AGG 0.646200 6.3:+27682735 None:intergenic
AGTGTGGCAGCTTCTACCGG+TGG 0.652117 6.3:-27682765 MS.gene80360:CDS
GGTAGAAGCTGCCACACTAG+CGG 0.655819 6.3:+27682770 None:intergenic
CGGTGCATATGATCGATCCA+CGG 0.720273 6.3:+27682790 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAGAAAAACTAATTTAA+AGG + chr6.3:27682493-27682512 None:intergenic 15.0%
!!! TTTTTTTCTTGAACATATTT+AGG - chr6.3:27682572-27682591 MS.gene80360:CDS 15.0%
!! ACAATAGATATAAATGTTGT+TGG - chr6.3:27682910-27682929 MS.gene80360:CDS 20.0%
!! GGTTCATAATATAAAACAAA+TGG - chr6.3:27683341-27683360 MS.gene80360:intron 20.0%
! AGAAACTGTTAATTTCACTT+TGG - chr6.3:27682792-27682811 MS.gene80360:CDS 25.0%
!! AATTTCACTTTGGAAAAACA+TGG - chr6.3:27682802-27682821 MS.gene80360:CDS 25.0%
!! TTGAACATATTTAGGTTAGA+GGG - chr6.3:27682580-27682599 MS.gene80360:CDS 25.0%
GTAGACATTCAAGATGAATT+AGG - chr6.3:27682691-27682710 MS.gene80360:CDS 30.0%
TTACATCAGTGGTCATAATT+TGG - chr6.3:27683296-27683315 MS.gene80360:intron 30.0%
! CTTGAACATATTTAGGTTAG+AGG - chr6.3:27682579-27682598 MS.gene80360:CDS 30.0%
CAATGAAGAGCCTAATATTC+CGG + chr6.3:27682854-27682873 None:intergenic 35.0%
GGAATATTAGGCTCTTCATT+GGG - chr6.3:27682853-27682872 MS.gene80360:CDS 35.0%
GTTAATAGTGTTTCCCCTTT+CGG - chr6.3:27683123-27683142 MS.gene80360:CDS 35.0%
TTTGATGCAGTATAACCACT+AGG + chr6.3:27683042-27683061 None:intergenic 35.0%
! CATCAAGTTGTAGCTTCAAT+TGG - chr6.3:27682715-27682734 MS.gene80360:CDS 35.0%
! GAAGCAATCGTAAGTTCTAA+GGG - chr6.3:27683198-27683217 MS.gene80360:intron 35.0%
! GCATCAAAACATGCTCTTTT+GGG - chr6.3:27683054-27683073 MS.gene80360:CDS 35.0%
! TGCATCAAAACATGCTCTTT+TGG - chr6.3:27683053-27683072 MS.gene80360:CDS 35.0%
!! AAGTTCTAAGGGTAATCTGA+AGG - chr6.3:27683209-27683228 MS.gene80360:intron 35.0%
!! AGTTCTAAGGGTAATCTGAA+GGG - chr6.3:27683210-27683229 MS.gene80360:intron 35.0%
!!! ACTTCAGGCTCTATTTTGAT+CGG + chr6.3:27683174-27683193 None:intergenic 35.0%
ATACCATCATTGCGACGTTA+GGG - chr6.3:27682753-27682772 MS.gene80360:CDS 40.0%
ATGGTTGCTAAAAATGTCCG+TGG - chr6.3:27682967-27682986 MS.gene80360:CDS 40.0%
CAAAATAGAGCCTGAAGTTG+TGG - chr6.3:27683176-27683195 MS.gene80360:CDS 40.0%
CATCAGTGGTCATAATTTGG+TGG - chr6.3:27683299-27683318 MS.gene80360:intron 40.0%
CGGAATATTAGGCTCTTCAT+TGG - chr6.3:27682852-27682871 MS.gene80360:CDS 40.0%
GATATCATGTTCAGCAATGC+CGG - chr6.3:27682832-27682851 MS.gene80360:CDS 40.0%
GATGAAGCTGTTTACATCAG+TGG - chr6.3:27683285-27683304 MS.gene80360:intron 40.0%
GGAAGCAATCGTAAGTTCTA+AGG - chr6.3:27683197-27683216 MS.gene80360:intron 40.0%
GGTAAGATAGCAATCATCAC+TGG - chr6.3:27682601-27682620 MS.gene80360:CDS 40.0%
GTGAAGTTGTTCGTCGAAAA+TGG - chr6.3:27682652-27682671 MS.gene80360:CDS 40.0%
TTCAGCAATGCCGGAATATT+AGG - chr6.3:27682841-27682860 MS.gene80360:CDS 40.0%
! GGTCATAATTTGGTGGTTGA+TGG - chr6.3:27683306-27683325 MS.gene80360:intron 40.0%
! TGTAGTGAACTTGGTGGTTA+TGG - chr6.3:27683093-27683112 MS.gene80360:CDS 40.0%
!! CATAATTTGGTGGTTGATGG+TGG - chr6.3:27683309-27683328 MS.gene80360:intron 40.0%
ACGATTGCTTCCACAACTTC+AGG + chr6.3:27683189-27683208 None:intergenic 45.0%
AGAGCAGCATGTAGTGAACT+TGG - chr6.3:27683084-27683103 MS.gene80360:CDS 45.0%
AGCCAGTGGAATTGGTAAAG+AGG - chr6.3:27682627-27682646 MS.gene80360:CDS 45.0%
CATACCATCATTGCGACGTT+AGG - chr6.3:27682752-27682771 MS.gene80360:CDS 45.0%
CGACGTTAGGGATGAAAAAC+AGG - chr6.3:27682765-27682784 MS.gene80360:CDS 45.0%
TGCCTCTTTACCAATTCCAC+TGG + chr6.3:27682632-27682651 None:intergenic 45.0%
!! AAAGGTGTTGCAACTCCGAA+AGG + chr6.3:27683141-27683160 None:intergenic 45.0%
!! AAGGTGTTGCAACTCCGAAA+GGG + chr6.3:27683140-27683159 None:intergenic 45.0%
!! TCTGAAGGGTGTTGTGTTGA+AGG - chr6.3:27683224-27683243 MS.gene80360:intron 45.0%
!! AAAAGATTATATATATATAT+AGG + chr6.3:27682450-27682469 None:intergenic 5.0%
!! AAAGATTATATATATATATA+GGG + chr6.3:27682449-27682468 None:intergenic 5.0%
!!! TATATATATATAATCTTTTT+TGG - chr6.3:27682451-27682470 MS.gene80360:CDS 5.0%
CATCCCTAACGTCGCAATGA+TGG + chr6.3:27682759-27682778 None:intergenic 50.0%
CGGTGCATATGATCGATCCA+CGG + chr6.3:27682987-27683006 None:intergenic 50.0%
GATCATATGCACCGCTAGTG+TGG - chr6.3:27682993-27683012 MS.gene80360:CDS 50.0%
GCAGCATGTAGTGAACTTGG+TGG - chr6.3:27683087-27683106 MS.gene80360:CDS 50.0%
TTGATCGGTGCACATGCGAA+AGG + chr6.3:27683159-27683178 None:intergenic 50.0%
! AGGTGTTGCAACTCCGAAAG+GGG + chr6.3:27683139-27683158 None:intergenic 50.0%
ACCACTAGGACCAGTTCCAC+CGG + chr6.3:27683028-27683047 None:intergenic 55.0%
ACTGGTGCAGCCAGTGGAAT+TGG - chr6.3:27682619-27682638 MS.gene80360:CDS 55.0%
ATCATCACTGGTGCAGCCAG+TGG - chr6.3:27682613-27682632 MS.gene80360:CDS 55.0%
GCTAGTGTGGCAGCTTCTAC+CGG - chr6.3:27683006-27683025 MS.gene80360:CDS 55.0%
GGTAGAAGCTGCCACACTAG+CGG + chr6.3:27683007-27683026 None:intergenic 55.0%
TAAGCACGCTGCTCGTGCTA+TGG - chr6.3:27682948-27682967 MS.gene80360:CDS 55.0%
!! GGTTGATGGTGGCTTCTCTG+TGG - chr6.3:27683320-27683339 MS.gene80360:intron 55.0%
ACCGGTGGAACTGGTCCTAG+TGG - chr6.3:27683024-27683043 MS.gene80360:CDS 60.0%
AGTGTGGCAGCTTCTACCGG+TGG - chr6.3:27683009-27683028 MS.gene80360:CDS 60.0%
GCAGCTTCTACCGGTGGAAC+TGG - chr6.3:27683015-27683034 MS.gene80360:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 27682428 27683368 27682428 ID=MS.gene80360
chr6.3 mRNA 27682428 27683368 27682428 ID=MS.gene80360.t1;Parent=MS.gene80360
chr6.3 exon 27683355 27683368 27683355 ID=MS.gene80360.t1.exon1;Parent=MS.gene80360.t1
chr6.3 CDS 27683355 27683368 27683355 ID=cds.MS.gene80360.t1;Parent=MS.gene80360.t1
chr6.3 exon 27682428 27683202 27682428 ID=MS.gene80360.t1.exon2;Parent=MS.gene80360.t1
chr6.3 CDS 27682428 27683202 27682428 ID=cds.MS.gene80360.t1;Parent=MS.gene80360.t1
Gene Sequence

>MS.gene80360

ATGATGAAGCAAAGGTATCCCTATATATATATATAATCTTTTTTGGTGTAATATTTTTGTCTCCTTTAAATTAGTTTTTCTTGAAAATTGTTCATTCTAACTTTTCAGCTCTATATATTTTGATTAGTTGACTTTATTTCTTCTTTTTTTTCTTGAACATATTTAGGTTAGAGGGTAAGATAGCAATCATCACTGGTGCAGCCAGTGGAATTGGTAAAGAGGCAGTGAAGTTGTTCGTCGAAAATGGAGCATTTGTTGTTGCAGTAGACATTCAAGATGAATTAGGTCATCAAGTTGTAGCTTCAATTGGCTCAGATAAAGTGACATACCATCATTGCGACGTTAGGGATGAAAAACAGGTTGAAGAAACTGTTAATTTCACTTTGGAAAAACATGGTCAACTTGATATCATGTTCAGCAATGCCGGAATATTAGGCTCTTCATTGGGCGTACTCGAGTTCGATCTAAATGAATTCAAGAACACAATAGATATAAATGTTGTTGGTTCAGCTGCTATGATTAAGCACGCTGCTCGTGCTATGGTTGCTAAAAATGTCCGTGGATCGATCATATGCACCGCTAGTGTGGCAGCTTCTACCGGTGGAACTGGTCCTAGTGGTTATACTGCATCAAAACATGCTCTTTTGGGACTTGTAAGAGCAGCATGTAGTGAACTTGGTGGTTATGGAATAAGAGTTAATAGTGTTTCCCCTTTCGGAGTTGCAACACCTTTCGCATGTGCACCGATCAAAATAGAGCCTGAAGTTGTGGAAGCAATCGTAAGTTCTAAGGGTAATCTGAAGGGTGTTGTGTTGAAGGCTAAGCATATTGCAGAAGCAGCTTTGTTTCTTGCTTCTGATGAAGCTGTTTACATCAGTGGTCATAATTTGGTGGTTGATGGTGGCTTCTCTGTGGTTCATAATATAAAACAAATGGTTTAA
Protein sequence

>MS.gene80360.t1

MMKQRLEGKIAIITGAASGIGKEAVKLFVENGAFVVAVDIQDELGHQVVASIGSDKVTYHHCDVRDEKQVEETVNFTLEKHGQLDIMFSNAGILGSSLGVLEFDLNEFKNTIDINVVGSAAMIKHAARAMVAKNVRGSIICTASVAASTGGTGPSGYTASKHALLGLVRAACSELGGYGIRVNSVSPFGVATPFACAPIKIEPEVVEAIVSSKGNLKGVVLKAKHIAEAALFLASDEAVYISGHNLVVDGGFSVVHNIKQMV