AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28847


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28847.t1 MTR_7g110130 93.985 266 15 1 1 265 1 266 0.0 499
MS.gene28847.t1 MTR_2g090165 81.509 265 48 1 1 265 1 264 1.57e-158 441
MS.gene28847.t1 MTR_7g110160 79.767 257 33 1 1 257 1 238 8.84e-144 403
MS.gene28847.t1 MTR_7g110140 68.797 266 79 2 1 263 1 265 2.30e-129 367
MS.gene28847.t1 MTR_6g035395 60.920 261 88 2 3 263 2 248 2.52e-107 311
MS.gene28847.t1 MTR_6g023590 49.801 251 125 1 5 254 12 262 5.09e-84 252
MS.gene28847.t1 MTR_6g023950 50.996 251 122 1 5 254 12 262 3.09e-82 248
MS.gene28847.t1 MTR_6g023610 50.000 250 124 1 5 253 12 261 7.88e-80 242
MS.gene28847.t1 MTR_4g052340 49.804 255 124 2 4 258 12 262 3.00e-79 240
MS.gene28847.t1 MTR_7g105460 50.198 253 125 1 5 257 12 263 1.43e-78 239
MS.gene28847.t1 MTR_4g052320 49.042 261 128 3 2 260 4 261 3.06e-78 238
MS.gene28847.t1 MTR_6g023600 48.606 251 128 1 5 254 12 262 5.00e-78 237
MS.gene28847.t1 MTR_6g023990 47.490 259 131 2 1 254 5 263 8.61e-78 236
MS.gene28847.t1 MTR_4g052350 49.804 255 124 2 4 258 12 262 1.65e-77 236
MS.gene28847.t1 MTR_6g023910 48.617 253 129 1 2 253 9 261 2.24e-77 236
MS.gene28847.t1 MTR_7g071680 47.482 278 125 4 2 260 25 300 5.16e-76 233
MS.gene28847.t1 MTR_4g052300 48.659 261 128 3 2 260 4 260 1.72e-75 231
MS.gene28847.t1 MTR_6g023600 48.207 251 123 2 5 254 12 256 2.87e-74 227
MS.gene28847.t1 MTR_7g083870 46.617 266 133 6 4 262 33 296 4.21e-70 218
MS.gene28847.t1 MTR_7g107670 44.141 256 136 3 4 254 31 284 4.43e-70 218
MS.gene28847.t1 MTR_7g105580 44.656 262 125 3 4 264 6 248 3.36e-67 209
MS.gene28847.t1 MTR_4g078630 43.956 273 141 4 1 265 14 282 1.57e-66 208
MS.gene28847.t1 MTR_3g020670 46.269 268 136 3 4 264 14 280 2.83e-66 207
MS.gene28847.t1 MTR_7g105590 49.735 189 94 1 4 192 6 193 5.21e-57 181
MS.gene28847.t1 MTR_7g105570 39.464 261 102 4 2 258 13 221 1.53e-49 163
MS.gene28847.t1 MTR_3g113870 45.055 182 98 2 14 195 29 208 7.15e-48 159
MS.gene28847.t1 MTR_4g084800 49.640 139 70 0 4 142 11 149 5.14e-41 139
MS.gene28847.t1 MTR_4g058840 30.855 269 146 8 6 252 11 261 3.40e-24 98.6
MS.gene28847.t1 MTR_4g058820 30.855 269 146 8 6 252 11 261 3.40e-24 98.6
MS.gene28847.t1 MTR_6g023940 33.173 208 62 4 2 201 9 147 9.14e-24 94.4
MS.gene28847.t1 MTR_4g058810 29.740 269 149 8 6 252 11 261 2.71e-20 87.8
MS.gene28847.t1 MTR_7g113650 27.925 265 170 8 5 258 39 293 5.04e-20 87.4
MS.gene28847.t1 MTR_3g085740 26.616 263 163 10 4 253 73 318 1.69e-19 86.7
MS.gene28847.t1 MTR_1g051165 28.253 269 168 7 4 255 12 272 1.93e-19 85.9
MS.gene28847.t1 MTR_4g131740 28.185 259 167 8 5 252 39 289 9.66e-19 84.0
MS.gene28847.t1 MTR_4g132850 29.528 254 167 6 4 254 5 249 1.87e-18 82.4
MS.gene28847.t1 MTR_1g082760 28.253 269 162 9 5 257 39 292 2.65e-18 82.8
MS.gene28847.t1 MTR_1196s0010 30.040 253 163 7 4 253 272 513 5.29e-18 83.6
MS.gene28847.t1 MTR_7g105560 64.286 56 20 0 4 59 11 66 4.65e-16 73.6
MS.gene28847.t1 MTR_3g068070 28.462 260 171 9 2 255 11 261 3.87e-15 73.6
MS.gene28847.t1 MTR_4g064887 26.923 260 175 8 2 255 11 261 4.74e-15 73.2
MS.gene28847.t1 MTR_3g068175 28.625 269 178 8 1 264 12 271 1.18e-13 69.3
MS.gene28847.t1 MTR_3g068065 26.772 254 173 7 6 254 17 262 2.86e-13 68.6
MS.gene28847.t1 MTR_3g068155 27.907 258 175 8 3 256 16 266 2.89e-13 68.6
MS.gene28847.t1 MTR_7g094520 27.165 254 174 5 6 253 11 259 3.01e-13 68.2
MS.gene28847.t1 MTR_3g068085 26.236 263 182 7 6 264 15 269 6.17e-13 67.4
MS.gene28847.t1 MTR_8g442750 27.132 258 172 8 6 253 14 265 1.40e-12 66.6
MS.gene28847.t1 MTR_4g064887 28.856 201 131 6 2 196 11 205 1.94e-12 65.5
MS.gene28847.t1 MTR_4g086400 27.488 211 124 5 8 198 6 207 4.93e-12 65.9
MS.gene28847.t1 MTR_4g097510 26.842 190 134 4 7 195 3 188 5.46e-12 64.7
MS.gene28847.t1 MTR_7g094510 26.236 263 175 7 1 253 1 254 8.29e-12 63.9
MS.gene28847.t1 MTR_4g086410 28.910 211 121 5 8 198 6 207 1.06e-11 65.1
MS.gene28847.t1 MTR_7g076660 39.560 91 51 2 9 95 8 98 4.60e-11 62.4
MS.gene28847.t1 MTR_7g076660 38.462 91 52 2 9 95 7 97 9.50e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28847.t1 AT2G47140 62.891 256 94 1 1 256 1 255 6.14e-114 328
MS.gene28847.t1 AT3G29250 57.588 257 108 1 1 257 1 256 1.39e-100 294
MS.gene28847.t1 AT3G29250 57.588 257 108 1 1 257 37 292 2.93e-100 295
MS.gene28847.t1 AT2G47130 56.977 258 109 2 1 258 1 256 3.16e-100 293
MS.gene28847.t1 AT3G29250 57.255 255 108 1 3 257 41 294 1.94e-99 293
MS.gene28847.t1 AT3G29260 57.364 258 106 3 1 257 1 255 2.58e-97 286
MS.gene28847.t1 AT2G47120 55.385 260 109 4 1 258 1 255 3.91e-97 285
MS.gene28847.t1 AT2G47120 55.336 253 110 3 5 257 6 255 2.17e-96 283
MS.gene28847.t1 AT3G51680 48.897 272 124 3 4 260 30 301 7.22e-74 228
MS.gene28847.t1 AT1G52340 45.455 264 133 3 4 257 16 278 2.55e-67 210
MS.gene28847.t1 AT3G26760 41.132 265 146 4 2 258 32 294 2.22e-65 206
MS.gene28847.t1 AT4G03140 42.692 260 142 3 4 258 76 333 7.25e-65 206
MS.gene28847.t1 AT3G26770 43.939 264 132 6 4 257 39 296 9.28e-63 199
MS.gene28847.t1 AT3G42960 45.620 274 130 7 2 263 4 270 7.24e-58 186
MS.gene28847.t1 AT2G47150 33.824 272 86 6 6 257 1 198 2.56e-36 128
MS.gene28847.t1 AT3G55290 29.231 260 162 8 6 252 17 267 3.17e-20 87.8
MS.gene28847.t1 AT3G55290 29.231 260 162 8 6 252 18 268 3.53e-20 87.8
MS.gene28847.t1 AT1G07450 29.845 258 171 7 1 255 3 253 7.72e-20 86.7
MS.gene28847.t1 AT2G29310 28.682 258 171 7 3 255 4 253 8.14e-20 86.7
MS.gene28847.t1 AT1G62610 29.231 260 163 6 6 252 15 266 9.07e-20 86.7
MS.gene28847.t1 AT1G62610 29.231 260 163 6 6 252 14 265 9.21e-20 86.7
MS.gene28847.t1 AT1G62610 29.231 260 163 6 6 252 13 264 9.94e-20 86.7
MS.gene28847.t1 AT1G62610 29.231 260 163 6 6 252 19 270 1.11e-19 86.7
MS.gene28847.t1 AT2G29340 28.846 260 168 7 3 255 4 253 4.31e-19 84.3
MS.gene28847.t1 AT2G29340 28.462 260 169 7 3 255 4 253 5.68e-19 85.1
MS.gene28847.t1 AT1G63380 29.104 268 159 9 6 255 17 271 3.24e-18 82.4
MS.gene28847.t1 AT1G63380 29.104 268 159 9 6 255 15 269 3.46e-18 82.4
MS.gene28847.t1 AT1G63380 29.104 268 159 9 6 255 19 273 3.47e-18 82.4
MS.gene28847.t1 AT3G55310 28.846 260 163 8 6 252 17 267 4.47e-18 82.0
MS.gene28847.t1 AT2G29150 30.534 262 162 9 2 255 12 261 4.54e-18 81.6
MS.gene28847.t1 AT1G63380 29.119 261 162 8 6 252 22 273 4.59e-18 82.0
MS.gene28847.t1 AT2G29360 28.839 267 159 9 3 255 13 262 1.38e-17 80.5
MS.gene28847.t1 AT2G29290 29.963 267 156 7 3 255 4 253 1.51e-17 80.1
MS.gene28847.t1 AT2G17845 27.985 268 166 8 6 256 47 304 3.40e-17 80.1
MS.gene28847.t1 AT3G46170 27.907 258 168 7 6 252 26 276 1.26e-16 78.2
MS.gene28847.t1 AT1G24360 25.969 258 175 8 4 255 72 319 1.81e-16 78.2
MS.gene28847.t1 AT2G29350 28.358 268 160 10 2 255 11 260 2.44e-15 74.3
MS.gene28847.t1 AT2G30670 27.132 258 175 6 3 255 4 253 2.60e-15 73.9
MS.gene28847.t1 AT2G29340 28.641 206 133 5 3 201 4 202 2.91e-15 72.8
MS.gene28847.t1 AT2G29340 28.641 206 133 5 3 201 4 202 2.91e-15 72.8
MS.gene28847.t1 AT1G54870 26.415 265 174 8 5 258 83 337 6.02e-15 73.9
MS.gene28847.t1 AT1G54870 26.415 265 174 8 5 258 81 335 6.67e-15 73.9
MS.gene28847.t1 AT5G06060 30.038 263 161 9 3 255 6 255 1.19e-14 72.4
MS.gene28847.t1 AT1G07440 27.715 267 161 9 3 255 9 257 1.24e-14 72.4
MS.gene28847.t1 AT4G05530 31.395 258 157 9 4 254 7 251 3.03e-14 70.9
MS.gene28847.t1 AT2G29300 27.969 261 170 10 3 255 4 254 3.80e-14 70.9
MS.gene28847.t1 AT2G29300 27.068 266 176 10 3 260 4 259 3.80e-14 71.2
MS.gene28847.t1 AT2G29290 29.954 217 132 6 42 255 37 236 7.77e-14 69.7
MS.gene28847.t1 AT1G49670 29.524 210 119 5 7 196 5 205 8.08e-14 71.2
MS.gene28847.t1 AT3G05260 26.336 262 172 8 5 255 36 287 9.04e-14 70.1
MS.gene28847.t1 AT1G49670 29.524 210 119 5 7 196 5 205 9.24e-14 71.2
MS.gene28847.t1 AT5G18210 28.244 262 164 5 6 253 8 259 1.25e-12 66.6
MS.gene28847.t1 AT4G13180 28.030 264 163 6 6 255 13 263 2.72e-12 65.5
MS.gene28847.t1 AT2G29350 29.187 209 120 8 2 196 11 205 5.38e-11 61.2

Find 55 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAAGGAATTACATTAA+AGG 0.203968 7.4:-5446105 MS.gene28847:CDS
GACTGATCCACGAACATTAA+TGG 0.261085 7.4:+5446412 None:intergenic
AGCAGATATCAATGATGAAT+TGG 0.283540 7.4:-5446642 MS.gene28847:CDS
AATCATCAATGTCGAGAAAA+AGG 0.290314 7.4:-5447003 None:intergenic
AGTGTAGCTGCTTCTGTTGC+TGG 0.306606 7.4:-5446320 MS.gene28847:CDS
GTGAAGACATTCATGGAAAA+TGG 0.307538 7.4:-5446680 MS.gene28847:CDS
ACATCCAAACATGGTCTCTT+AGG 0.311178 7.4:-5446275 MS.gene28847:CDS
TTATATTAGTGGACACAATT+TGG 0.312298 7.4:-5446033 MS.gene28847:CDS
CACCAAGTTGCTACAACAAT+TGG 0.313612 7.4:-5446617 MS.gene28847:CDS
TACACTGGCAGTACAAATTA+TGG 0.348031 7.4:+5446337 None:intergenic
GTTGCTAAACATAATGTCTA+AGG 0.368211 7.4:+5446505 None:intergenic
GCTGCTTCTGTTGCTGGAAC+TGG 0.384524 7.4:-5446314 MS.gene28847:CDS
TTATCATAGGTTGGAGGGTA+AGG 0.422520 7.4:-5446747 MS.gene28847:intron
GAAGAATCAGCTTATATTAG+TGG 0.431042 7.4:-5446044 MS.gene28847:CDS
TGCGGTGAGCTTGGAGCTTA+CGG 0.431271 7.4:-5446236 MS.gene28847:CDS
CGTTCAACGTGCGGTGAGCT+TGG 0.449623 7.4:-5446245 MS.gene28847:CDS
CGAGACAGTGAAGACATTCA+TGG 0.459149 7.4:-5446687 MS.gene28847:CDS
GCAGATATCAATGATGAATT+GGG 0.463215 7.4:-5446641 MS.gene28847:CDS
AAGTCCTAAGAGACCATGTT+TGG 0.467093 7.4:+5446271 None:intergenic
ACCCAATTGTTGTAGCAACT+TGG 0.467514 7.4:+5446615 None:intergenic
TTTAGCAACGCTGGAATTGA+AGG 0.468853 7.4:-5446491 MS.gene28847:CDS
AATGATTCTGCTAATTTGAA+AGG 0.470724 7.4:-5446119 MS.gene28847:CDS
AGCTGCTCTCTTTCTTGCAT+CGG 0.473087 7.4:-5446066 MS.gene28847:CDS
ACCAAGTTGCTACAACAATT+GGG 0.482213 7.4:-5446616 MS.gene28847:CDS
CAAGCACGCTGCACGTATCA+TGG 0.486933 7.4:-5446381 MS.gene28847:CDS
CATGAATGTCTTCACTGTCT+CGG 0.489073 7.4:+5446688 None:intergenic
GACATTATGTTTAGCAACGC+TGG 0.491704 7.4:-5446500 MS.gene28847:CDS
GGTAAGGTTGCTATAGTGAC+TGG 0.496701 7.4:-5446731 MS.gene28847:CDS
AACATGGCCATTAATGTTCG+TGG 0.507255 7.4:-5446419 MS.gene28847:CDS
CACAATTTGGTGGTCGATGG+AGG 0.510608 7.4:-5446020 MS.gene28847:CDS
GTGAGTGAAGTTGAAGCTAT+GGG 0.510902 7.4:-5446143 MS.gene28847:CDS
AGAGGCGTGGCAACAGCATA+CGG 0.535077 7.4:+5446191 None:intergenic
AGCAACAGAAGCAGCTACAC+TGG 0.548413 7.4:+5446322 None:intergenic
GCTTCTGTTGCTGGAACTGG+TGG 0.550638 7.4:-5446311 MS.gene28847:CDS
AGTTGCTACAACAATTGGGT+TGG 0.551015 7.4:-5446612 MS.gene28847:CDS
GGTGAGTGAAGTTGAAGCTA+TGG 0.560707 7.4:-5446144 MS.gene28847:CDS
TATTAGTGGACACAATTTGG+TGG 0.561555 7.4:-5446030 MS.gene28847:CDS
GGACACAATTTGGTGGTCGA+TGG 0.563116 7.4:-5446023 MS.gene28847:CDS
GGAAACAGTAGCTTTCGCAT+TGG 0.572052 7.4:-5446540 MS.gene28847:CDS
TGCATGTAGAGCACTGAACA+TGG 0.590712 7.4:-5446168 MS.gene28847:CDS
GTAAGGTTGCTATAGTGACT+GGG 0.597391 7.4:-5446730 MS.gene28847:CDS
TTCAGTGCTCTACATGCAAG+AGG 0.603585 7.4:+5446173 None:intergenic
GATTATGTCACATCCAAACA+TGG 0.609752 7.4:-5446284 MS.gene28847:CDS
TGCTCTACATGCAAGAGGCG+TGG 0.617171 7.4:+5446178 None:intergenic
CATCTCTCACATCACAATGG+TGG 0.624448 7.4:+5446576 None:intergenic
TTTCATCTCTCACATCACAA+TGG 0.636508 7.4:+5446573 None:intergenic
AGCAACGCTGGAATTGAAGG+TGG 0.637971 7.4:-5446488 MS.gene28847:CDS
GGACTTGTACGTTCAACGTG+CGG 0.641327 7.4:-5446254 MS.gene28847:CDS
CAGTACAAATTATGGATCCG+CGG 0.653793 7.4:+5446345 None:intergenic
TGAGTGAAGTTGAAGCTATG+GGG 0.654036 7.4:-5446142 MS.gene28847:CDS
GAATGAATTTGACAACAACA+TGG 0.663292 7.4:-5446435 MS.gene28847:CDS
TAAGGTTGCTATAGTGACTG+GGG 0.680742 7.4:-5446729 MS.gene28847:CDS
GCACGCTGCACGTATCATGG+TGG 0.695569 7.4:-5446378 MS.gene28847:CDS
AAGGTTGCTATAGTGACTGG+GGG 0.716926 7.4:-5446728 MS.gene28847:CDS
ATGTAGAGCACTGAACATGG+AGG 0.811309 7.4:-5446165 MS.gene28847:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTAAAAAAAAAAAAAAGA+TGG + chr7.4:5446030-5446049 None:intergenic 10.0%
!!! ATCTTAATTAATTTTATCAT+AGG - chr7.4:5446212-5446231 MS.gene28847:CDS 10.0%
!!! TAATTAATTTTATCATAGGT+TGG - chr7.4:5446216-5446235 MS.gene28847:CDS 15.0%
!! TTATTAGGATATATTCATGT+GGG + chr7.4:5446132-5446151 None:intergenic 20.0%
!! TTTGAAAGGAATTACATTAA+AGG - chr7.4:5446867-5446886 MS.gene28847:intron 20.0%
!!! GATTTAACCTTTTTGAAAAT+TGG - chr7.4:5446086-5446105 MS.gene28847:CDS 20.0%
! AATGATTCTGCTAATTTGAA+AGG - chr7.4:5446853-5446872 MS.gene28847:intron 25.0%
! CAAAATTTCACCTAATAAGA+TGG + chr7.4:5446064-5446083 None:intergenic 25.0%
! CATGTAGTAATGTTCTTATT+AGG + chr7.4:5446147-5446166 None:intergenic 25.0%
! CTTATTAGGATATATTCATG+TGG + chr7.4:5446133-5446152 None:intergenic 25.0%
! TGTATTCATGCAACATAAAT+AGG + chr7.4:5446182-5446201 None:intergenic 25.0%
!! TTATATTAGTGGACACAATT+TGG - chr7.4:5446939-5446958 MS.gene28847:intron 25.0%
!!! TAATTTTATCATAGGTTGGA+GGG - chr7.4:5446220-5446239 MS.gene28847:CDS 25.0%
!!! TTAATTTTATCATAGGTTGG+AGG - chr7.4:5446219-5446238 MS.gene28847:CDS 25.0%
AGCAGATATCAATGATGAAT+TGG - chr7.4:5446330-5446349 MS.gene28847:CDS 30.0%
GAAGAATCAGCTTATATTAG+TGG - chr7.4:5446928-5446947 MS.gene28847:intron 30.0%
GAATGAATTTGACAACAACA+TGG - chr7.4:5446537-5446556 MS.gene28847:CDS 30.0%
GCAGATATCAATGATGAATT+GGG - chr7.4:5446331-5446350 MS.gene28847:CDS 30.0%
GTTGCTAAACATAATGTCTA+AGG + chr7.4:5446470-5446489 None:intergenic 30.0%
ACCAAGTTGCTACAACAATT+GGG - chr7.4:5446356-5446375 MS.gene28847:CDS 35.0%
GAGAGATGAAAAACAAGTTG+AGG - chr7.4:5446411-5446430 MS.gene28847:CDS 35.0%
GATTATGTCACATCCAAACA+TGG - chr7.4:5446688-5446707 MS.gene28847:CDS 35.0%
GCTTTCGCATTGGAAAAATA+TGG - chr7.4:5446442-5446461 MS.gene28847:CDS 35.0%
GGGTTTCACATTATTATGTG+AGG + chr7.4:5446112-5446131 None:intergenic 35.0%
GTAACACTCACCATCTTATT+AGG - chr7.4:5446051-5446070 MS.gene28847:CDS 35.0%
GTGAAGACATTCATGGAAAA+TGG - chr7.4:5446292-5446311 MS.gene28847:CDS 35.0%
TACACTGGCAGTACAAATTA+TGG + chr7.4:5446638-5446657 None:intergenic 35.0%
TTTCATCTCTCACATCACAA+TGG + chr7.4:5446402-5446421 None:intergenic 35.0%
! TATTAGTGGACACAATTTGG+TGG - chr7.4:5446942-5446961 MS.gene28847:intron 35.0%
! TGTGAGGCCAATTTTCAAAA+AGG + chr7.4:5446096-5446115 None:intergenic 35.0%
AACATGGCCATTAATGTTCG+TGG - chr7.4:5446553-5446572 MS.gene28847:CDS 40.0%
AAGTCCTAAGAGACCATGTT+TGG + chr7.4:5446704-5446723 None:intergenic 40.0%
ACATCCAAACATGGTCTCTT+AGG - chr7.4:5446697-5446716 MS.gene28847:CDS 40.0%
ACCCAATTGTTGTAGCAACT+TGG + chr7.4:5446360-5446379 None:intergenic 40.0%
AGTTGCTACAACAATTGGGT+TGG - chr7.4:5446360-5446379 MS.gene28847:CDS 40.0%
CACCAAGTTGCTACAACAAT+TGG - chr7.4:5446355-5446374 MS.gene28847:CDS 40.0%
CAGTACAAATTATGGATCCG+CGG + chr7.4:5446630-5446649 None:intergenic 40.0%
CATGAATGTCTTCACTGTCT+CGG + chr7.4:5446287-5446306 None:intergenic 40.0%
GACATTATGTTTAGCAACGC+TGG - chr7.4:5446472-5446491 MS.gene28847:CDS 40.0%
GACTGATCCACGAACATTAA+TGG + chr7.4:5446563-5446582 None:intergenic 40.0%
GTAAGGTTGCTATAGTGACT+GGG - chr7.4:5446242-5446261 MS.gene28847:CDS 40.0%
GTGAGTGAAGTTGAAGCTAT+GGG - chr7.4:5446829-5446848 MS.gene28847:intron 40.0%
TAAGGTTGCTATAGTGACTG+GGG - chr7.4:5446243-5446262 MS.gene28847:CDS 40.0%
TGAGTGAAGTTGAAGCTATG+GGG - chr7.4:5446830-5446849 MS.gene28847:intron 40.0%
TTTAGCAACGCTGGAATTGA+AGG - chr7.4:5446481-5446500 MS.gene28847:CDS 40.0%
! TTATCATAGGTTGGAGGGTA+AGG - chr7.4:5446225-5446244 MS.gene28847:CDS 40.0%
AAGGTTGCTATAGTGACTGG+GGG - chr7.4:5446244-5446263 MS.gene28847:CDS 45.0%
AGCTGCTCTCTTTCTTGCAT+CGG - chr7.4:5446906-5446925 MS.gene28847:intron 45.0%
CATCTCTCACATCACAATGG+TGG + chr7.4:5446399-5446418 None:intergenic 45.0%
CGAGACAGTGAAGACATTCA+TGG - chr7.4:5446285-5446304 MS.gene28847:CDS 45.0%
GGAAACAGTAGCTTTCGCAT+TGG - chr7.4:5446432-5446451 MS.gene28847:CDS 45.0%
GGTAAGGTTGCTATAGTGAC+TGG - chr7.4:5446241-5446260 MS.gene28847:CDS 45.0%
GGTGAGTGAAGTTGAAGCTA+TGG - chr7.4:5446828-5446847 MS.gene28847:intron 45.0%
TTCAGTGCTCTACATGCAAG+AGG + chr7.4:5446802-5446821 None:intergenic 45.0%
! ATGGTGGAGAGAAAAATCCG+CGG - chr7.4:5446610-5446629 MS.gene28847:CDS 45.0%
!! ATGTAGAGCACTGAACATGG+AGG - chr7.4:5446807-5446826 MS.gene28847:intron 45.0%
!! TGCATGTAGAGCACTGAACA+TGG - chr7.4:5446804-5446823 MS.gene28847:intron 45.0%
!!! ATCTTTTTTTTTTTTTTAAA+CGG - chr7.4:5446029-5446048 MS.gene28847:CDS 5.0%
AGATGGTGAGTGTTAGACGC+AGG + chr7.4:5446013-5446032 None:intergenic 50.0%
AGCAACAGAAGCAGCTACAC+TGG + chr7.4:5446653-5446672 None:intergenic 50.0%
AGCAACGCTGGAATTGAAGG+TGG - chr7.4:5446484-5446503 MS.gene28847:CDS 50.0%
AGTGTAGCTGCTTCTGTTGC+TGG - chr7.4:5446652-5446671 MS.gene28847:CDS 50.0%
GAGTGTTAGACGCAGGAGTA+AGG + chr7.4:5446006-5446025 None:intergenic 50.0%
GGACTTGTACGTTCAACGTG+CGG - chr7.4:5446718-5446737 MS.gene28847:CDS 50.0%
! CACAATTTGGTGGTCGATGG+AGG - chr7.4:5446952-5446971 MS.gene28847:intron 50.0%
! GGACACAATTTGGTGGTCGA+TGG - chr7.4:5446949-5446968 MS.gene28847:intron 50.0%
ATAGTGACTGGGGGAGCAAG+CGG - chr7.4:5446253-5446272 MS.gene28847:CDS 55.0%
CAAGCACGCTGCACGTATCA+TGG - chr7.4:5446591-5446610 MS.gene28847:CDS 55.0%
GCTGCTTCTGTTGCTGGAAC+TGG - chr7.4:5446658-5446677 MS.gene28847:CDS 55.0%
GCTTCTGTTGCTGGAACTGG+TGG - chr7.4:5446661-5446680 MS.gene28847:CDS 55.0%
TGCGGTGAGCTTGGAGCTTA+CGG - chr7.4:5446736-5446755 MS.gene28847:CDS 55.0%
TGCTCTACATGCAAGAGGCG+TGG + chr7.4:5446797-5446816 None:intergenic 55.0%
! AGAGGCGTGGCAACAGCATA+CGG + chr7.4:5446784-5446803 None:intergenic 55.0%
ACTGGGGGAGCAAGCGGAAT+AGG - chr7.4:5446259-5446278 MS.gene28847:CDS 60.0%
CGTTCAACGTGCGGTGAGCT+TGG - chr7.4:5446727-5446746 MS.gene28847:CDS 60.0%
GCACGCTGCACGTATCATGG+TGG - chr7.4:5446594-5446613 MS.gene28847:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 5445977 5447017 5445977 ID=MS.gene28847
chr7.4 mRNA 5445977 5447017 5445977 ID=MS.gene28847.t1;Parent=MS.gene28847
chr7.4 exon 5447004 5447017 5447004 ID=MS.gene28847.t1.exon1;Parent=MS.gene28847.t1
chr7.4 CDS 5447004 5447017 5447004 ID=cds.MS.gene28847.t1;Parent=MS.gene28847.t1
chr7.4 exon 5445977 5446760 5445977 ID=MS.gene28847.t1.exon2;Parent=MS.gene28847.t1
chr7.4 CDS 5445977 5446760 5445977 ID=cds.MS.gene28847.t1;Parent=MS.gene28847.t1
Gene Sequence

>MS.gene28847

ATGTCGAGAAAAAGGTACTACATATTCCTTACTCCTGCGTCTAACACTCACCATCTTTTTTTTTTTTTTAAACGGTAACACTCACCATCTTATTAGGTGAAATTTTGTCGATTTAACCTTTTTGAAAATTGGCCTCACATAATAATGTGAAACCCACATGAATATATCCTAATAAGAACATTACTACATGAATTTATTTTATCCTATTTATGTTGCATGAATACATGATGAATCAATCTTAATTAATTTTATCATAGGTTGGAGGGTAAGGTTGCTATAGTGACTGGGGGAGCAAGCGGAATAGGAGCCGAGACAGTGAAGACATTCATGGAAAATGGAGCATTTGTAGTCATAGCAGATATCAATGATGAATTGGGTCACCAAGTTGCTACAACAATTGGGTTGGACAAAGTGAGTTACCACCATTGTGATGTGAGAGATGAAAAACAAGTTGAGGAAACAGTAGCTTTCGCATTGGAAAAATATGGAACCTTAGACATTATGTTTAGCAACGCTGGAATTGAAGGTGGTATGTGTAGCAGCATACTAGAATTTGATCTGAATGAATTTGACAACAACATGGCCATTAATGTTCGTGGATCAGTCGCAGCTATCAAGCACGCTGCACGTATCATGGTGGAGAGAAAAATCCGCGGATCCATAATTTGTACTGCCAGTGTAGCTGCTTCTGTTGCTGGAACTGGTGGTCATGATTATGTCACATCCAAACATGGTCTCTTAGGACTTGTACGTTCAACGTGCGGTGAGCTTGGAGCTTACGGAATTAGAGTCAATTCAATCTCACCGTATGCTGTTGCCACGCCTCTTGCATGTAGAGCACTGAACATGGAGGTGAGTGAAGTTGAAGCTATGGGGAATGATTCTGCTAATTTGAAAGGAATTACATTAAAGGCTACTCATATTGCAGAAGCTGCTCTCTTTCTTGCATCGGAAGAATCAGCTTATATTAGTGGACACAATTTGGTGGTCGATGGAGGCTTTTCTGTTATTAATAGTTGTGTTCCTACTATTAAAAAATAA

Protein sequence

>MS.gene28847.t1

MSRKRLEGKVAIVTGGASGIGAETVKTFMENGAFVVIADINDELGHQVATTIGLDKVSYHHCDVRDEKQVEETVAFALEKYGTLDIMFSNAGIEGGMCSSILEFDLNEFDNNMAINVRGSVAAIKHAARIMVERKIRGSIICTASVAASVAGTGGHDYVTSKHGLLGLVRSTCGELGAYGIRVNSISPYAVATPLACRALNMEVSEVEAMGNDSANLKGITLKATHIAEAALFLASEESAYISGHNLVVDGGFSVINSCVPTIKK