AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41122


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41122.t1 MTR_4g064887 93.633 267 17 0 1 267 1 267 0.0 512
MS.gene41122.t1 MTR_4g064887 92.344 209 16 0 1 209 1 209 5.59e-143 400
MS.gene41122.t1 MTR_3g068155 61.004 259 101 0 3 261 7 265 1.27e-121 348
MS.gene41122.t1 MTR_3g068070 59.160 262 107 0 1 262 1 262 1.01e-118 340
MS.gene41122.t1 MTR_3g068175 62.302 252 95 0 11 262 13 264 6.87e-118 338
MS.gene41122.t1 MTR_4g064883 62.451 253 95 0 10 262 9 261 5.29e-116 333
MS.gene41122.t1 MTR_3g068175 61.328 256 95 1 11 262 13 268 1.44e-115 333
MS.gene41122.t1 MTR_3g068085 59.274 248 101 0 15 262 15 262 7.36e-112 323
MS.gene41122.t1 MTR_3g068065 59.677 248 100 0 15 262 17 264 9.76e-111 320
MS.gene41122.t1 MTR_7g063270 56.818 264 110 2 1 260 1 264 2.08e-109 317
MS.gene41122.t1 MTR_7g063390 55.805 267 111 3 1 261 1 266 1.55e-105 307
MS.gene41122.t1 MTR_7g063260 55.094 265 114 2 1 260 1 265 1.90e-104 304
MS.gene41122.t1 MTR_7g063360 54.135 266 117 3 1 261 1 266 1.62e-101 297
MS.gene41122.t1 MTR_7g063320 53.232 263 119 1 1 259 1 263 1.47e-100 294
MS.gene41122.t1 MTR_7g063330 53.232 263 120 1 1 260 1 263 1.38e-99 292
MS.gene41122.t1 MTR_4g064883 62.000 200 76 0 10 209 9 208 6.44e-87 258
MS.gene41122.t1 MTR_7g063270 49.242 264 81 4 1 260 1 215 1.15e-82 247
MS.gene41122.t1 MTR_4g132850 33.333 246 159 4 15 259 7 248 1.22e-33 122
MS.gene41122.t1 MTR_3g085740 33.740 246 152 7 21 261 81 320 5.13e-30 115
MS.gene41122.t1 MTR_7g094510 32.400 250 161 5 15 258 6 253 1.50e-27 107
MS.gene41122.t1 MTR_7g094520 29.880 251 168 4 15 259 11 259 1.46e-25 102
MS.gene41122.t1 MTR_8g442750 31.008 258 159 6 15 259 14 265 2.76e-25 102
MS.gene41122.t1 MTR_4g131740 29.811 265 174 6 8 263 33 294 3.07e-25 101
MS.gene41122.t1 MTR_4g058840 28.346 254 175 5 15 261 11 264 9.25e-22 92.0
MS.gene41122.t1 MTR_4g058820 28.346 254 175 5 15 261 11 264 9.25e-22 92.0
MS.gene41122.t1 MTR_4g058810 27.953 254 176 5 15 261 11 264 3.28e-21 90.5
MS.gene41122.t1 MTR_4g052350 30.712 267 160 12 15 267 14 269 8.04e-21 89.4
MS.gene41122.t1 MTR_1g051165 25.769 260 179 6 15 261 14 272 2.52e-20 88.2
MS.gene41122.t1 MTR_6g023610 28.409 264 177 6 1 257 1 259 6.40e-20 87.0
MS.gene41122.t1 MTR_1196s0010 30.328 244 155 8 20 258 279 512 1.05e-19 88.6
MS.gene41122.t1 MTR_3g020670 30.370 270 169 10 5 260 6 270 1.08e-19 86.7
MS.gene41122.t1 MTR_7g105460 28.519 270 175 9 1 261 1 261 1.44e-19 85.9
MS.gene41122.t1 MTR_4g052320 30.798 263 160 9 10 261 3 254 2.55e-19 85.1
MS.gene41122.t1 MTR_7g071680 27.491 291 173 8 6 266 20 302 2.85e-19 85.5
MS.gene41122.t1 MTR_1g068955 31.907 257 152 8 15 257 14 261 3.10e-19 85.1
MS.gene41122.t1 MTR_6g023990 28.195 266 180 7 1 259 1 262 3.60e-19 84.7
MS.gene41122.t1 MTR_4g052340 30.943 265 148 13 15 262 14 260 5.06e-19 84.3
MS.gene41122.t1 MTR_7g113650 29.183 257 171 6 15 263 40 293 5.21e-19 84.7
MS.gene41122.t1 MTR_6g023590 28.571 266 178 7 1 259 1 261 3.59e-18 82.0
MS.gene41122.t1 MTR_2g090165 28.517 263 174 8 11 264 2 259 4.58e-18 81.6
MS.gene41122.t1 MTR_1579s0020 45.000 80 43 1 181 260 1 79 4.75e-18 77.4
MS.gene41122.t1 MTR_1g082760 28.405 257 171 8 15 262 40 292 1.14e-17 81.3
MS.gene41122.t1 MTR_6g023910 27.273 264 180 7 1 257 1 259 2.79e-17 79.7
MS.gene41122.t1 MTR_6g023600 28.947 266 177 7 1 259 1 261 4.71e-17 79.0
MS.gene41122.t1 MTR_4g052300 26.744 258 176 6 10 261 3 253 3.37e-16 76.6
MS.gene41122.t1 MTR_7g110160 28.125 256 158 7 11 261 2 236 3.97e-16 75.9
MS.gene41122.t1 MTR_7g083870 26.923 260 169 7 15 260 35 287 1.02e-15 75.9
MS.gene41122.t1 MTR_4g078630 27.857 280 162 13 5 260 8 271 1.19e-15 75.5
MS.gene41122.t1 MTR_7g110130 27.027 259 176 8 11 261 2 255 1.91e-15 74.3
MS.gene41122.t1 MTR_7g107670 25.283 265 180 6 8 260 26 284 3.09e-15 74.3
MS.gene41122.t1 MTR_6g023950 28.195 266 179 7 1 259 1 261 3.40e-15 73.9
MS.gene41122.t1 MTR_7g080410 28.646 192 119 4 22 202 45 229 4.91e-15 73.9
MS.gene41122.t1 MTR_7g080410 28.646 192 119 4 22 202 45 229 5.20e-15 73.6
MS.gene41122.t1 MTR_6g023600 28.195 266 173 7 1 259 1 255 9.03e-15 72.4
MS.gene41122.t1 MTR_7g105570 29.944 177 111 5 94 261 46 218 3.48e-14 70.5
MS.gene41122.t1 MTR_8g089575 29.167 216 142 6 17 225 47 258 1.17e-13 70.1
MS.gene41122.t1 MTR_4g058830 27.922 154 107 3 112 261 57 210 1.22e-13 68.6
MS.gene41122.t1 MTR_6g041980 28.571 252 154 7 15 250 64 305 4.57e-13 68.6
MS.gene41122.t1 MTR_7g110140 28.016 257 175 8 11 261 2 254 7.19e-13 67.4
MS.gene41122.t1 MTR_7g105590 26.596 188 133 4 15 200 8 192 3.70e-12 63.9
MS.gene41122.t1 MTR_7g105580 24.231 260 166 8 15 265 8 245 5.72e-12 64.7
MS.gene41122.t1 MTR_6g041980 32.680 153 97 4 5 154 54 203 1.64e-11 63.5
MS.gene41122.t1 MTR_7g053290 31.148 183 117 7 82 259 192 370 3.10e-11 63.2
MS.gene41122.t1 MTR_7g076655 26.939 245 120 6 20 208 9 250 7.39e-11 61.6
MS.gene41122.t1 MTR_6g035395 25.882 255 168 7 12 261 2 240 7.82e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41122.t1 AT1G07440 63.602 261 94 1 7 267 4 263 5.54e-123 351
MS.gene41122.t1 AT2G29340 62.016 258 98 0 10 267 2 259 1.01e-119 343
MS.gene41122.t1 AT2G29150 63.878 263 93 2 1 262 1 262 1.71e-119 342
MS.gene41122.t1 AT5G06060 61.265 253 98 0 10 262 4 256 2.11e-119 342
MS.gene41122.t1 AT2G29340 62.016 258 98 0 10 267 2 259 4.17e-119 343
MS.gene41122.t1 AT2G29350 63.740 262 94 1 1 262 1 261 2.34e-118 340
MS.gene41122.t1 AT2G29360 63.878 263 94 1 1 262 1 263 3.28e-117 337
MS.gene41122.t1 AT2G29290 62.791 258 96 0 10 267 2 259 4.84e-117 336
MS.gene41122.t1 AT2G30670 61.660 253 97 0 10 262 2 254 3.48e-115 331
MS.gene41122.t1 AT2G29310 60.392 255 101 0 10 264 2 256 4.01e-113 326
MS.gene41122.t1 AT1G07450 63.347 251 91 1 12 262 5 254 3.28e-111 321
MS.gene41122.t1 AT2G29370 61.217 263 101 1 1 262 1 263 4.41e-111 321
MS.gene41122.t1 AT2G29330 58.140 258 108 0 10 267 2 259 5.05e-110 318
MS.gene41122.t1 AT2G29260 59.363 251 102 0 12 262 65 315 5.31e-110 320
MS.gene41122.t1 AT2G29320 58.594 256 105 1 13 267 11 266 2.40e-108 314
MS.gene41122.t1 AT2G29300 58.103 253 105 1 10 261 2 254 1.14e-106 310
MS.gene41122.t1 AT2G29300 56.977 258 110 1 10 266 2 259 2.07e-105 307
MS.gene41122.t1 AT2G29290 62.553 235 88 0 33 267 8 242 1.41e-104 304
MS.gene41122.t1 AT2G29350 63.677 223 80 1 40 262 2 223 1.38e-100 293
MS.gene41122.t1 AT2G29310 60.345 232 92 0 31 262 21 252 4.58e-100 293
MS.gene41122.t1 AT2G29320 57.143 238 101 1 31 267 11 248 1.62e-96 283
MS.gene41122.t1 AT2G29350 63.942 208 75 0 1 208 1 208 7.96e-92 271
MS.gene41122.t1 AT2G29340 58.500 200 83 0 10 209 2 201 4.18e-86 255
MS.gene41122.t1 AT2G29340 58.500 200 83 0 10 209 2 201 4.18e-86 255
MS.gene41122.t1 AT2G29310 56.500 200 87 0 10 209 2 201 1.93e-81 243
MS.gene41122.t1 AT2G29320 56.545 191 82 1 13 202 11 201 1.22e-75 229
MS.gene41122.t1 AT1G07440 60.843 166 65 0 7 172 4 169 1.31e-71 218
MS.gene41122.t1 AT2G29310 55.307 179 80 0 31 209 21 199 2.25e-68 210
MS.gene41122.t1 AT2G29170 61.765 102 38 1 1 101 1 102 4.77e-38 129
MS.gene41122.t1 AT4G05530 31.707 246 163 4 15 259 9 250 1.82e-30 114
MS.gene41122.t1 AT3G03980 31.852 270 163 7 5 258 4 268 1.03e-28 110
MS.gene41122.t1 AT1G24360 32.787 244 157 6 21 261 80 319 7.58e-28 109
MS.gene41122.t1 AT3G04000 32.075 265 160 8 15 265 14 272 2.17e-27 107
MS.gene41122.t1 AT4G13180 31.559 263 172 6 5 261 3 263 2.37e-27 106
MS.gene41122.t1 AT3G55310 30.078 256 168 7 15 261 17 270 3.30e-27 106
MS.gene41122.t1 AT3G55290 29.297 256 170 7 15 261 18 271 8.68e-26 102
MS.gene41122.t1 AT3G55290 29.297 256 170 7 15 261 17 270 9.16e-26 102
MS.gene41122.t1 AT1G63380 30.739 257 166 7 15 261 15 269 1.01e-25 102
MS.gene41122.t1 AT5G18210 30.268 261 159 6 14 259 7 259 1.04e-25 102
MS.gene41122.t1 AT1G63380 30.739 257 166 7 15 261 17 271 1.05e-25 102
MS.gene41122.t1 AT1G63380 30.739 257 166 7 15 261 19 273 1.12e-25 102
MS.gene41122.t1 AT1G63380 30.739 257 166 7 15 261 22 276 1.51e-25 102
MS.gene41122.t1 AT3G12800 28.346 254 172 4 15 259 10 262 1.21e-24 100
MS.gene41122.t1 AT3G05260 32.707 266 165 8 7 262 27 288 1.30e-24 100
MS.gene41122.t1 AT1G62610 29.961 257 168 7 15 261 13 267 3.34e-24 98.6
MS.gene41122.t1 AT1G62610 29.961 257 168 7 15 261 14 268 3.54e-24 98.6
MS.gene41122.t1 AT1G62610 29.961 257 168 7 15 261 19 273 3.75e-24 98.6
MS.gene41122.t1 AT1G62610 29.961 257 168 7 15 261 15 269 3.84e-24 98.6
MS.gene41122.t1 AT1G54870 32.061 262 155 10 15 262 84 336 9.22e-24 98.6
MS.gene41122.t1 AT1G54870 32.061 262 155 10 15 262 82 334 1.03e-23 98.6
MS.gene41122.t1 AT5G18210 30.453 243 146 6 14 241 7 241 1.23e-22 94.4
MS.gene41122.t1 AT3G46170 27.344 256 175 7 15 261 26 279 4.27e-21 90.5
MS.gene41122.t1 AT2G17845 27.734 256 171 7 15 258 47 300 4.36e-21 90.9
MS.gene41122.t1 AT2G47120 27.519 258 173 9 11 261 2 252 9.36e-19 83.6
MS.gene41122.t1 AT2G47120 27.559 254 170 9 15 261 7 253 1.63e-18 82.8
MS.gene41122.t1 AT3G51680 27.336 289 182 10 1 266 20 303 3.16e-18 82.8
MS.gene41122.t1 AT3G42960 29.213 267 165 9 10 260 3 261 5.69e-18 81.6
MS.gene41122.t1 AT3G26760 28.044 271 170 9 5 260 30 290 2.23e-17 80.5
MS.gene41122.t1 AT4G03140 25.781 256 176 6 15 260 78 329 4.93e-17 80.1
MS.gene41122.t1 AT3G06060 28.571 217 144 5 9 220 31 241 5.98e-15 73.9
MS.gene41122.t1 AT3G06060 28.571 217 144 5 9 220 48 258 7.13e-15 73.9
MS.gene41122.t1 AT1G52340 27.106 273 157 8 15 260 18 275 1.20e-14 72.4
MS.gene41122.t1 AT2G47130 26.562 256 179 7 11 261 2 253 1.34e-14 72.0
MS.gene41122.t1 AT3G26770 27.273 264 163 8 15 260 41 293 8.88e-14 70.5
MS.gene41122.t1 AT5G19200 27.619 210 143 4 15 220 35 239 1.69e-13 69.7
MS.gene41122.t1 AT1G10310 31.551 187 124 4 19 204 19 202 2.62e-12 65.5
MS.gene41122.t1 AT3G03330 26.531 196 135 5 14 202 40 233 3.64e-12 65.9
MS.gene41122.t1 AT5G65205 26.596 188 127 5 21 205 12 191 5.78e-11 62.0

Find 63 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCAAGATTTCTCATTTC+TGG 0.136218 4.1:-35996889 MS.gene41122:CDS
CAAGCCTAGCTTATTGTAGA+AGG 0.334137 4.1:+35995950 None:intergenic
GTAAAATCTAGTGATTGTTT+TGG 0.345117 4.1:+35996912 None:intergenic
CCTGCAGCCTCTTTCATAAC+AGG 0.358569 4.1:-35996015 MS.gene41122:CDS
GCTGCAAGAGGGGTTCTGAT+TGG 0.385802 4.1:+35996532 None:intergenic
ACTGGTGGATCCAAAGGAAT+AGG 0.388939 4.1:-35997737 MS.gene41122:CDS
GGACAGACCATTTGTATTGA+TGG 0.394810 4.1:-35995994 MS.gene41122:CDS
AGAACCCCTCTTGGACGTAT+TGG 0.397142 4.1:-35996081 MS.gene41122:CDS
AGATAGCAACCCTATTCCTT+TGG 0.397711 4.1:+35997727 None:intergenic
TCAATGAATGCTTACATCAA+TGG 0.398769 4.1:-35997191 MS.gene41122:CDS
CTCATTTCAAGAACCCCTCT+TGG 0.419602 4.1:-35996090 MS.gene41122:CDS
CAATGAATGCTTACATCAAT+GGG 0.449372 4.1:-35997190 MS.gene41122:CDS
ACCAAGGAAGACACCTCTTC+TGG 0.466532 4.1:+35996054 None:intergenic
GAGTTTGAAGCTTTGAGTAA+TGG 0.471691 4.1:+35996819 None:intergenic
TATGACTAGGTATGATATAG+TGG 0.472016 4.1:-35997271 MS.gene41122:intron
AAATAGTAAGTGGTCTTTGA+AGG 0.483818 4.1:-35997777 MS.gene41122:CDS
ACCAGAAGAGGTGTCTTCCT+TGG 0.491068 4.1:-35996055 MS.gene41122:CDS
TGGAGCAATTAGCAGAGCTA+GGG 0.491202 4.1:-35997251 MS.gene41122:CDS
AGAGGGGTTCTGATTGGCCC+TGG 0.498674 4.1:+35996538 None:intergenic
ATGACAGCTCTGGTCACTGG+TGG 0.504668 4.1:-35997752 MS.gene41122:CDS
ACCATCTATAGTGCAGCAAA+AGG 0.506661 4.1:-35996741 MS.gene41122:intron
TTTGAAGGGGATGACAGCTC+TGG 0.513224 4.1:-35997762 MS.gene41122:CDS
GGGATGACAGCTCTGGTCAC+TGG 0.516153 4.1:-35997755 MS.gene41122:CDS
TGAGTAATGGATGTGCAAGC+TGG 0.522910 4.1:+35996832 None:intergenic
AATAGTAAGTGGTCTTTGAA+GGG 0.525324 4.1:-35997776 MS.gene41122:CDS
GTGGAGCAATTAGCAGAGCT+AGG 0.526426 4.1:-35997252 MS.gene41122:CDS
AGGACTAATTGTGTTGCACC+AGG 0.529569 4.1:-35996556 MS.gene41122:CDS
TTACATCAATGGGTCACAAA+AGG 0.532043 4.1:-35997180 MS.gene41122:CDS
AGACCATTTGTATTGATGGC+GGG 0.533740 4.1:-35995990 MS.gene41122:CDS
CAAGTAGCAGAAATAGTAAG+TGG 0.538795 4.1:-35997787 MS.gene41122:CDS
CTGGTCACTGGTGGATCCAA+AGG 0.539538 4.1:-35997743 MS.gene41122:CDS
TAACCCGCCATCAATACAAA+TGG 0.540084 4.1:+35995987 None:intergenic
AGAGTCTCTTCTGAGTTCAA+TGG 0.543714 4.1:-35997093 MS.gene41122:CDS
GGGGTAGCATCACTAAATGT+AGG 0.544472 4.1:-35996765 MS.gene41122:CDS
ACAAAAGGATACAAAATCAC+TGG 0.547408 4.1:-35997165 MS.gene41122:CDS
CCTGTTATGAAAGAGGCTGC+AGG 0.552564 4.1:+35996015 None:intergenic
CTGGTGGATCCAAAGGAATA+GGG 0.554228 4.1:-35997736 MS.gene41122:intron
CCACTGTACACACTTGTGCT+AGG 0.562221 4.1:-35997227 MS.gene41122:CDS
TTTCATGTCCTCCATTGTTG+GGG 0.575336 4.1:-35996784 MS.gene41122:CDS
GAAATTTAGGTGAACAATGT+GGG 0.576001 4.1:-35996945 MS.gene41122:intron
AAATTACTTCTGCTGCAAGA+GGG 0.579918 4.1:+35996521 None:intergenic
AGTGGGCTAGAGACAACATA+AGG 0.591685 4.1:-35996576 MS.gene41122:CDS
AAAATTACTTCTGCTGCAAG+AGG 0.594537 4.1:+35996520 None:intergenic
GTTCTCCAATACGTCCAAGA+GGG 0.595929 4.1:+35996076 None:intergenic
AGAAGAGGTGTCTTCCTTGG+TGG 0.599777 4.1:-35996052 MS.gene41122:CDS
AAGAGGCTGCAGGTAAGCAT+AGG 0.600954 4.1:+35996025 None:intergenic
CAGACCATTTGTATTGATGG+CGG 0.601299 4.1:-35995991 MS.gene41122:CDS
TGAAATTTAGGTGAACAATG+TGG 0.603162 4.1:-35996946 MS.gene41122:intron
AATTACTTCTGCTGCAAGAG+GGG 0.604432 4.1:+35996522 None:intergenic
GTCATCTCGTGCACAAAGAG+AGG 0.604943 4.1:-35997127 MS.gene41122:CDS
ATAGTAAGTGGTCTTTGAAG+GGG 0.610704 4.1:-35997775 MS.gene41122:CDS
GGTCTGTCCTGTTATGAAAG+AGG 0.618109 4.1:+35996008 None:intergenic
TAGTGATGCTACCCCAACAA+TGG 0.638650 4.1:+35996773 None:intergenic
TATTAAGGAGAAATGGCAGA+GGG 0.641387 4.1:-35997815 None:intergenic
ACGTATTGGAGAACCAGAAG+AGG 0.658963 4.1:-35996067 MS.gene41122:CDS
GTATTAAGGAGAAATGGCAG+AGG 0.659922 4.1:-35997816 None:intergenic
GGAGCAATTAGCAGAGCTAG+GGG 0.662491 4.1:-35997250 MS.gene41122:CDS
TTCTCCAATACGTCCAAGAG+GGG 0.662521 4.1:+35996077 None:intergenic
TGATGCTACCCCAACAATGG+AGG 0.664800 4.1:+35996776 None:intergenic
GGACTAATTGTGTTGCACCA+GGG 0.676221 4.1:-35996555 MS.gene41122:CDS
TAAGCATAGGAATGCCACCA+AGG 0.681785 4.1:+35996038 None:intergenic
GGTTCTCCAATACGTCCAAG+AGG 0.697030 4.1:+35996075 None:intergenic
CCTAGCACAAGTGTGTACAG+TGG 0.731390 4.1:+35997227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATAAATAAATAAATGT+CGG + chr4.1:35996798-35996817 None:intergenic 10.0%
!! TTTATTTATGTATGAAATTT+AGG - chr4.1:35996805-35996824 MS.gene41122:CDS 10.0%
!! ACTATATAAATCCTATAAAA+AGG + chr4.1:35996762-35996781 None:intergenic 15.0%
!! ATCAATTAACTACAAAATTT+GGG + chr4.1:35996213-35996232 None:intergenic 15.0%
!! CATATTTATTGAATGAAATA+TGG + chr4.1:35997577-35997596 None:intergenic 15.0%
!!! TATTTTTTTCACCTTTTTAT+AGG - chr4.1:35996748-35996767 MS.gene41122:CDS 15.0%
!! CTAAAAACGAGTTTATAAAT+GGG + chr4.1:35997553-35997572 None:intergenic 20.0%
!! GATCAATTAACTACAAAATT+TGG + chr4.1:35996214-35996233 None:intergenic 20.0%
!! TGTATTATTAATTGCTTACA+AGG + chr4.1:35996708-35996727 None:intergenic 20.0%
!! TTGTTAAAATATTGTTCCAT+TGG + chr4.1:35996396-35996415 None:intergenic 20.0%
!!! AATTAGCTTTGAGTTAATTT+AGG + chr4.1:35996270-35996289 None:intergenic 20.0%
!!! TATTGACTAATAATAACCAA+TGG - chr4.1:35996377-35996396 MS.gene41122:intron 20.0%
! AAACCAGCTTACAAAAAATT+TGG - chr4.1:35997158-35997177 MS.gene41122:CDS 25.0%
! ATATATGTAATTGACAATGC+AGG - chr4.1:35997129-35997148 MS.gene41122:CDS 25.0%
! ATGTGAATTAAACTATGACT+AGG - chr4.1:35996479-35996498 MS.gene41122:intron 25.0%
! CCTAAAAACGAGTTTATAAA+TGG + chr4.1:35997554-35997573 None:intergenic 25.0%
! TCAACTAATTTCATGATCTA+TGG + chr4.1:35996151-35996170 None:intergenic 25.0%
! TTTCTCAACAAATATGTACA+TGG + chr4.1:35997350-35997369 None:intergenic 25.0%
!! GTAAAATCTAGTGATTGTTT+TGG + chr4.1:35996854-35996873 None:intergenic 25.0%
!!! CCATTTATAAACTCGTTTTT+AGG - chr4.1:35997551-35997570 MS.gene41122:intron 25.0%
!!! TGGACACAATCTAAATTTTT+TGG + chr4.1:35997484-35997503 None:intergenic 25.0%
AAAAAATTTGGCATGTGAGT+GGG - chr4.1:35997170-35997189 MS.gene41122:CDS 30.0%
AAATAGTAAGTGGTCTTTGA+AGG - chr4.1:35995986-35996005 MS.gene41122:CDS 30.0%
AATAGTAAGTGGTCTTTGAA+GGG - chr4.1:35995987-35996006 MS.gene41122:CDS 30.0%
ACAAAAGGATACAAAATCAC+TGG - chr4.1:35996598-35996617 MS.gene41122:CDS 30.0%
CAATGAATGCTTACATCAAT+GGG - chr4.1:35996573-35996592 MS.gene41122:CDS 30.0%
GAAATTTAGGTGAACAATGT+GGG - chr4.1:35996818-35996837 MS.gene41122:CDS 30.0%
GAATTAGACTATTGACAACT+AGG + chr4.1:35996294-35996313 None:intergenic 30.0%
TATGACTAGGTATGATATAG+TGG - chr4.1:35996492-35996511 MS.gene41122:intron 30.0%
TCAATGAATGCTTACATCAA+TGG - chr4.1:35996572-35996591 MS.gene41122:CDS 30.0%
TGAAATTTAGGTGAACAATG+TGG - chr4.1:35996817-35996836 MS.gene41122:CDS 30.0%
!!! ATCTTTTAAGATCTGCAAGA+AGG + chr4.1:35997635-35997654 None:intergenic 30.0%
!!! ATGCCAAATTTTTTGTAAGC+TGG + chr4.1:35997164-35997183 None:intergenic 30.0%
!!! TAGTGATTGTTTTGGTATGT+TGG + chr4.1:35996846-35996865 None:intergenic 30.0%
AAAATTACTTCTGCTGCAAG+AGG + chr4.1:35997246-35997265 None:intergenic 35.0%
AAATTACTTCTGCTGCAAGA+GGG + chr4.1:35997245-35997264 None:intergenic 35.0%
AGCAAAAGGTAACTGTTTCA+TGG - chr4.1:35997036-35997055 MS.gene41122:intron 35.0%
CAAAAAATTTGGCATGTGAG+TGG - chr4.1:35997169-35997188 MS.gene41122:CDS 35.0%
CAAGTAGCAGAAATAGTAAG+TGG - chr4.1:35995976-35995995 MS.gene41122:CDS 35.0%
CAATAGTCATGATGCTTGTT+TGG - chr4.1:35996321-35996340 MS.gene41122:intron 35.0%
GCACAAAAGAATAAGAGAAG+AGG + chr4.1:35996073-35996092 None:intergenic 35.0%
TGAGCAAGATTTCTCATTTC+TGG - chr4.1:35996874-35996893 MS.gene41122:CDS 35.0%
TGGTATCTGACTAATGAGTT+GGG + chr4.1:35997464-35997483 None:intergenic 35.0%
TTACATCAATGGGTCACAAA+AGG - chr4.1:35996583-35996602 MS.gene41122:CDS 35.0%
TTGGTATCTGACTAATGAGT+TGG + chr4.1:35997465-35997484 None:intergenic 35.0%
! AAGCATCATGACTATTGACT+AGG + chr4.1:35996318-35996337 None:intergenic 35.0%
! ATAGTAAGTGGTCTTTGAAG+GGG - chr4.1:35995988-35996007 MS.gene41122:CDS 35.0%
! GCAGTATTAGCCAATTTTCT+AGG + chr4.1:35997519-35997538 None:intergenic 35.0%
! TTTTCATGTCCTCCATTGTT+GGG - chr4.1:35996978-35996997 MS.gene41122:intron 35.0%
!! GAGTTTGAAGCTTTGAGTAA+TGG + chr4.1:35996947-35996966 None:intergenic 35.0%
!! TTAGCCAATTTTCTAGGAGT+TGG + chr4.1:35997513-35997532 None:intergenic 35.0%
AATTACTTCTGCTGCAAGAG+GGG + chr4.1:35997244-35997263 None:intergenic 40.0%
ACCATCTATAGTGCAGCAAA+AGG - chr4.1:35997022-35997041 MS.gene41122:intron 40.0%
AGAGTCTCTTCTGAGTTCAA+TGG - chr4.1:35996670-35996689 MS.gene41122:intron 40.0%
AGATAGCAACCCTATTCCTT+TGG + chr4.1:35996039-35996058 None:intergenic 40.0%
CCATCCAACTCCTAGAAAAT+TGG - chr4.1:35997506-35997525 MS.gene41122:intron 40.0%
GGACAGACCATTTGTATTGA+TGG - chr4.1:35997769-35997788 MS.gene41122:CDS 40.0%
TAACCCGCCATCAATACAAA+TGG + chr4.1:35997779-35997798 None:intergenic 40.0%
TTTCATGTCCTCCATTGTTG+GGG - chr4.1:35996979-35996998 MS.gene41122:intron 40.0%
! ACCTTTTGCTGCACTATAGA+TGG + chr4.1:35997026-35997045 None:intergenic 40.0%
! AGACCATTTGTATTGATGGC+GGG - chr4.1:35997773-35997792 MS.gene41122:CDS 40.0%
! CAGACCATTTGTATTGATGG+CGG - chr4.1:35997772-35997791 MS.gene41122:CDS 40.0%
! GTTTTCATGTCCTCCATTGT+TGG - chr4.1:35996977-35996996 MS.gene41122:intron 40.0%
! TTTCTAGGAGTTGGATGGAT+TGG + chr4.1:35997504-35997523 None:intergenic 40.0%
!! CCAATTTTCTAGGAGTTGGA+TGG + chr4.1:35997509-35997528 None:intergenic 40.0%
ACGTATTGGAGAACCAGAAG+AGG - chr4.1:35997696-35997715 MS.gene41122:intron 45.0%
AGGACTAATTGTGTTGCACC+AGG - chr4.1:35997207-35997226 MS.gene41122:CDS 45.0%
CTCATTTCAAGAACCCCTCT+TGG - chr4.1:35997673-35997692 MS.gene41122:intron 45.0%
GGACTAATTGTGTTGCACCA+GGG - chr4.1:35997208-35997227 MS.gene41122:CDS 45.0%
GGGGTAGCATCACTAAATGT+AGG - chr4.1:35996998-35997017 MS.gene41122:intron 45.0%
GGTCTGTCCTGTTATGAAAG+AGG + chr4.1:35997758-35997777 None:intergenic 45.0%
GTTCTCCAATACGTCCAAGA+GGG + chr4.1:35997690-35997709 None:intergenic 45.0%
TAAGCATAGGAATGCCACCA+AGG + chr4.1:35997728-35997747 None:intergenic 45.0%
TAGTGATGCTACCCCAACAA+TGG + chr4.1:35996993-35997012 None:intergenic 45.0%
TGGAGCAATTAGCAGAGCTA+GGG - chr4.1:35996512-35996531 MS.gene41122:intron 45.0%
TTCTCCAATACGTCCAAGAG+GGG + chr4.1:35997689-35997708 None:intergenic 45.0%
! ACTGGTGGATCCAAAGGAAT+AGG - chr4.1:35996026-35996045 MS.gene41122:CDS 45.0%
! CGAACTAGTTTGTCCGATGT+GGG - chr4.1:35997430-35997449 MS.gene41122:intron 45.0%
! CTGGTGGATCCAAAGGAATA+GGG - chr4.1:35996027-35996046 MS.gene41122:CDS 45.0%
! TCGAACTAGTTTGTCCGATG+TGG - chr4.1:35997429-35997448 MS.gene41122:intron 45.0%
!! AGTGGGCTAGAGACAACATA+AGG - chr4.1:35997187-35997206 MS.gene41122:CDS 45.0%
!! TGAGTAATGGATGTGCAAGC+TGG + chr4.1:35996934-35996953 None:intergenic 45.0%
AAGAGGCTGCAGGTAAGCAT+AGG + chr4.1:35997741-35997760 None:intergenic 50.0%
ACCAAGGAAGACACCTCTTC+TGG + chr4.1:35997712-35997731 None:intergenic 50.0%
AGAACCCCTCTTGGACGTAT+TGG - chr4.1:35997682-35997701 MS.gene41122:intron 50.0%
CCACTGTACACACTTGTGCT+AGG - chr4.1:35996536-35996555 MS.gene41122:CDS 50.0%
CCTAGCACAAGTGTGTACAG+TGG + chr4.1:35996539-35996558 None:intergenic 50.0%
CCTGCAGCCTCTTTCATAAC+AGG - chr4.1:35997748-35997767 MS.gene41122:CDS 50.0%
CCTGTTATGAAAGAGGCTGC+AGG + chr4.1:35997751-35997770 None:intergenic 50.0%
GGAGCAATTAGCAGAGCTAG+GGG - chr4.1:35996513-35996532 MS.gene41122:intron 50.0%
GGTTCTCCAATACGTCCAAG+AGG + chr4.1:35997691-35997710 None:intergenic 50.0%
GTCATCTCGTGCACAAAGAG+AGG - chr4.1:35996636-35996655 MS.gene41122:intron 50.0%
GTGGAGCAATTAGCAGAGCT+AGG - chr4.1:35996511-35996530 MS.gene41122:intron 50.0%
TGATGCTACCCCAACAATGG+AGG + chr4.1:35996990-35997009 None:intergenic 50.0%
TTTGAAGGGGATGACAGCTC+TGG - chr4.1:35996001-35996020 MS.gene41122:CDS 50.0%
!! ACCAGAAGAGGTGTCTTCCT+TGG - chr4.1:35997708-35997727 MS.gene41122:intron 50.0%
!! AGAAGAGGTGTCTTCCTTGG+TGG - chr4.1:35997711-35997730 MS.gene41122:intron 50.0%
!! TTGGGCTAGTCATCCCACAT+CGG + chr4.1:35997446-35997465 None:intergenic 50.0%
! ATGACAGCTCTGGTCACTGG+TGG - chr4.1:35996011-35996030 MS.gene41122:CDS 55.0%
! CTGGTCACTGGTGGATCCAA+AGG - chr4.1:35996020-35996039 MS.gene41122:CDS 55.0%
! GCTGCAAGAGGGGTTCTGAT+TGG + chr4.1:35997234-35997253 None:intergenic 55.0%
! AGAGGGGTTCTGATTGGCCC+TGG + chr4.1:35997228-35997247 None:intergenic 60.0%
! GGGATGACAGCTCTGGTCAC+TGG - chr4.1:35996008-35996027 MS.gene41122:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 35995960 35997825 35995960 ID=MS.gene41122
chr4.1 mRNA 35995960 35997825 35995960 ID=MS.gene41122.t1;Parent=MS.gene41122
chr4.1 exon 35997737 35997825 35997737 ID=MS.gene41122.t1.exon1;Parent=MS.gene41122.t1
chr4.1 CDS 35997737 35997825 35997737 ID=cds.MS.gene41122.t1;Parent=MS.gene41122.t1
chr4.1 exon 35997077 35997284 35997077 ID=MS.gene41122.t1.exon2;Parent=MS.gene41122.t1
chr4.1 CDS 35997077 35997284 35997077 ID=cds.MS.gene41122.t1;Parent=MS.gene41122.t1
chr4.1 exon 35996742 35996958 35996742 ID=MS.gene41122.t1.exon3;Parent=MS.gene41122.t1
chr4.1 CDS 35996742 35996958 35996742 ID=cds.MS.gene41122.t1;Parent=MS.gene41122.t1
chr4.1 exon 35996528 35996634 35996528 ID=MS.gene41122.t1.exon4;Parent=MS.gene41122.t1
chr4.1 CDS 35996528 35996634 35996528 ID=cds.MS.gene41122.t1;Parent=MS.gene41122.t1
chr4.1 exon 35995960 35996142 35995960 ID=MS.gene41122.t1.exon5;Parent=MS.gene41122.t1
chr4.1 CDS 35995960 35996142 35995960 ID=cds.MS.gene41122.t1;Parent=MS.gene41122.t1
Gene Sequence

>MS.gene41122

ATGGCAGAGGGAAACACAAGTAGCAGAAATAGTAAGTGGTCTTTGAAGGGGATGACAGCTCTGGTCACTGGTGGATCCAAAGGAATAGGGTTGCTATCTTTTGTTCTTTTCCTCTTCTCTTATTCTTTTGTGCAGATTATTTTGCTTATTTCTCTTGTTGCAAATTAATTGATCTTTTAGCAGCTCTACCATAGATCATGAAATTAGTTGAGTTAATCACAAATATACTATTTTAATTTTTAGCTAGCTACCCAAATTTTGTAGTTAATTGATCATAACTAATACTTTTTTTTAAACTGTAACTAATCCTAAATTAACTCAAAGCTAATTTCCTAGTTGTCAATAGTCTAATTCACCTAGTCAATAGTCATGATGCTTGTTTGGAAAAAAATTGTGCAAGCAAGTCAAACATGTTTATATTGACTAATAATAACCAATGGAACAATATTTTAACAAATTAAATATGATAGTCTTATATAAAAAATATTTATGAATCATGATTTTTCTCACTGTTTATATATGTGAATTAAACTATGACTAGGTATGATATAGTGGAGCAATTAGCAGAGCTAGGGGCCACTGTACACACTTGTGCTAGGAATGAAGCTAAACTCAATGAATGCTTACATCAATGGGTCACAAAAGGATACAAAATCACTGGTTCAGTCTGTGATGTGTCATCTCGTGCACAAAGAGAGGAGCTCATAGCTAGAGTCTCTTCTGAGTTCAATGGCAAACTCAATATCCTTGTAAGCAATTAATAATACAATACATGAAATTGAAGTTACTATTTTTTTCACCTTTTTATAGGATTTATATAGTTTGTTACATTAGACCGACATTTATTTATTTATGTATGAAATTTAGGTGAACAATGTGGGAACCAACATACCAAAACAATCACTAGATTTTACTGAGCAAGATTTCTCATTTCTGGTGAATACAAATCTTGAATCTGCTTTTCACATAAGCCAGCTTGCACATCCATTACTCAAAGCTTCAAACTCTGCAAGCATTGTTTTCATGTCCTCCATTGTTGGGGTAGCATCACTAAATGTAGGAACCATCTATAGTGCAGCAAAAGGTAACTGTTTCATGGTTTTAATTTAGTAAAATTGACACTGTAATTTTTATTTTTTTTTTGAACTAAAAATGTTTAATTTTAAAATATATATGTAATTGACAATGCAGGAGCAATAAACCAGCTTACAAAAAATTTGGCATGTGAGTGGGCTAGAGACAACATAAGGACTAATTGTGTTGCACCAGGGCCAATCAGAACCCCTCTTGCAGCAGAAGTAATTTTCTATACTTGTTGTTTGAGTATAATGATTTTACAATTTATCTAAAAAAAATGTTTTACTCACAGTTATCTAGTTACATCATGCCATGTACATATTTGTTGAGAAAATAATATCATATGATGATATATAATTCTTGAAATTTGAGTTGCGCTTAACTCAACTCTATCGAACTAGTTTGTCCGATGTGGGATGACTAGCCCAACTCATTAGTCAGATACCAAAAAATTTAGATTGTGTCCAATCCATCCAACTCCTAGAAAATTGGCTAATACTGCGTGACTTGTCTCCCATTTATAAACTCGTTTTTAGGCCATATTTCATTCAATAAATATGTAAAAAAAGAGTTACATGTTAATGCATAGTTATTTCCTTCTTGCAGATCTTAAAAGATGAAAAACTTCTCGATGCTCTCATTTCAAGAACCCCTCTTGGACGTATTGGAGAACCAGAAGAGGTGTCTTCCTTGGTGGCATTCCTATGCTTACCTGCAGCCTCTTTCATAACAGGACAGACCATTTGTATTGATGGCGGGTTAACTGTCAACTGTCTCCTTCTACAATAA

Protein sequence

>MS.gene41122.t1

MAEGNTSSRNSKWSLKGMTALVTGGSKGIGYDIVEQLAELGATVHTCARNEAKLNECLHQWVTKGYKITGSVCDVSSRAQREELIARVSSEFNGKLNILVNNVGTNIPKQSLDFTEQDFSFLVNTNLESAFHISQLAHPLLKASNSASIVFMSSIVGVASLNVGTIYSAAKGAINQLTKNLACEWARDNIRTNCVAPGPIRTPLAAEILKDEKLLDALISRTPLGRIGEPEEVSSLVAFLCLPAASFITGQTICIDGGLTVNCLLLQ