AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003992

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003992.t1 MTR_4g064887 94.382 267 15 0 1 267 1 267 0.0 518
MS.gene003992.t1 MTR_4g064887 92.823 209 15 0 1 209 1 209 2.51e-144 404
MS.gene003992.t1 MTR_3g068155 61.004 259 101 0 3 261 7 265 3.88e-121 347
MS.gene003992.t1 MTR_3g068070 59.160 262 107 0 1 262 1 262 1.16e-118 340
MS.gene003992.t1 MTR_3g068175 62.302 252 95 0 11 262 13 264 1.01e-117 338
MS.gene003992.t1 MTR_4g064883 62.451 253 95 0 10 262 9 261 7.93e-116 333
MS.gene003992.t1 MTR_3g068175 61.328 256 95 1 11 262 13 268 2.51e-115 332
MS.gene003992.t1 MTR_3g068085 59.542 262 106 0 1 262 1 262 3.97e-113 327
MS.gene003992.t1 MTR_3g068065 59.677 248 100 0 15 262 17 264 1.25e-110 320
MS.gene003992.t1 MTR_7g063270 56.818 264 110 2 1 260 1 264 4.82e-109 316
MS.gene003992.t1 MTR_7g063390 55.805 267 111 3 1 261 1 266 3.38e-105 306
MS.gene003992.t1 MTR_7g063260 55.094 265 114 2 1 260 1 265 2.75e-104 304
MS.gene003992.t1 MTR_7g063320 53.962 265 118 2 1 261 1 265 1.01e-101 297
MS.gene003992.t1 MTR_7g063360 54.135 266 117 3 1 261 1 266 3.60e-101 296
MS.gene003992.t1 MTR_7g063330 53.232 263 120 1 1 260 1 263 1.32e-98 289
MS.gene003992.t1 MTR_4g064883 62.000 200 76 0 10 209 9 208 3.53e-87 258
MS.gene003992.t1 MTR_7g063270 49.242 264 81 4 1 260 1 215 1.62e-82 247
MS.gene003992.t1 MTR_4g132850 32.927 246 160 4 15 259 7 248 2.61e-33 122
MS.gene003992.t1 MTR_3g085740 33.333 246 153 7 21 261 81 320 9.19e-29 111
MS.gene003992.t1 MTR_7g094510 32.400 250 161 5 15 258 6 253 1.14e-26 104
MS.gene003992.t1 MTR_8g442750 30.888 259 158 6 15 259 14 265 9.25e-26 103
MS.gene003992.t1 MTR_4g131740 29.434 265 175 6 8 263 33 294 4.35e-25 101
MS.gene003992.t1 MTR_7g094520 29.880 251 168 4 15 259 11 259 9.78e-25 99.8
MS.gene003992.t1 MTR_4g052350 31.518 257 155 11 15 261 14 259 7.86e-23 94.7
MS.gene003992.t1 MTR_4g058840 28.346 254 175 5 15 261 11 264 1.26e-21 91.7
MS.gene003992.t1 MTR_4g058820 28.346 254 175 5 15 261 11 264 1.26e-21 91.7
MS.gene003992.t1 MTR_4g058810 27.953 254 176 5 15 261 11 264 4.20e-21 90.1
MS.gene003992.t1 MTR_4g052340 30.189 265 150 12 15 262 14 260 7.34e-21 89.4
MS.gene003992.t1 MTR_7g105460 28.889 270 174 9 1 261 1 261 9.25e-21 89.4
MS.gene003992.t1 MTR_4g052320 30.303 264 160 9 10 261 3 254 2.34e-20 88.2
MS.gene003992.t1 MTR_1g051165 25.769 260 179 6 15 261 14 272 2.91e-20 88.2
MS.gene003992.t1 MTR_7g113650 29.572 257 170 6 15 263 40 293 3.20e-20 88.2
MS.gene003992.t1 MTR_6g023990 28.195 266 180 7 1 259 1 262 4.06e-20 87.4
MS.gene003992.t1 MTR_3g020670 30.769 273 164 10 5 260 6 270 4.95e-20 87.4
MS.gene003992.t1 MTR_1196s0010 31.148 244 153 10 20 258 279 512 9.70e-20 88.6
MS.gene003992.t1 MTR_7g071680 27.491 291 173 8 6 266 20 302 2.93e-19 85.5
MS.gene003992.t1 MTR_6g023610 28.679 265 175 7 1 257 1 259 3.74e-19 84.7
MS.gene003992.t1 MTR_6g023590 28.571 266 178 7 1 259 1 261 3.77e-19 84.7
MS.gene003992.t1 MTR_1g068955 31.907 257 152 8 15 257 14 261 4.11e-19 85.1
MS.gene003992.t1 MTR_1g082760 28.516 256 172 6 15 262 40 292 7.48e-19 84.3
MS.gene003992.t1 MTR_4g052300 27.027 259 174 6 10 261 3 253 4.53e-18 81.6
MS.gene003992.t1 MTR_2g090165 28.195 266 171 9 11 264 2 259 8.46e-18 80.9
MS.gene003992.t1 MTR_6g023600 28.947 266 177 7 1 259 1 261 8.71e-18 80.9
MS.gene003992.t1 MTR_4g078630 28.214 280 161 12 5 260 8 271 1.52e-17 80.5
MS.gene003992.t1 MTR_1579s0020 43.750 80 44 1 181 260 1 79 1.66e-17 75.9
MS.gene003992.t1 MTR_6g023910 27.273 264 180 7 1 257 1 259 3.09e-17 79.7
MS.gene003992.t1 MTR_7g083870 27.376 263 164 6 15 260 35 287 9.52e-17 78.6
MS.gene003992.t1 MTR_6g023950 28.571 266 178 7 1 259 1 261 5.05e-16 76.3
MS.gene003992.t1 MTR_7g110160 28.125 256 158 7 11 261 2 236 7.02e-16 75.5
MS.gene003992.t1 MTR_6g023600 28.195 266 173 7 1 259 1 255 1.61e-15 74.7
MS.gene003992.t1 MTR_7g080410 28.646 192 119 4 22 202 45 229 3.43e-15 74.3
MS.gene003992.t1 MTR_7g080410 28.646 192 119 4 22 202 45 229 3.55e-15 74.3
MS.gene003992.t1 MTR_7g110130 26.641 259 177 8 11 261 2 255 3.93e-15 73.6
MS.gene003992.t1 MTR_7g105570 30.508 177 110 5 94 261 46 218 5.44e-15 72.8
MS.gene003992.t1 MTR_7g107670 25.283 265 180 6 8 260 26 284 8.64e-15 73.2
MS.gene003992.t1 MTR_6g041980 30.435 253 148 10 15 250 64 305 6.68e-14 70.9
MS.gene003992.t1 MTR_4g058830 27.922 154 107 3 112 261 57 210 1.21e-13 68.6
MS.gene003992.t1 MTR_7g110140 28.736 261 168 10 11 261 2 254 4.21e-13 67.8
MS.gene003992.t1 MTR_7g105590 26.596 188 133 4 15 200 8 192 2.49e-12 64.7
MS.gene003992.t1 MTR_7g105580 24.715 263 161 8 15 265 8 245 3.59e-12 65.1
MS.gene003992.t1 MTR_6g041980 33.333 159 99 5 5 160 54 208 6.24e-12 64.7
MS.gene003992.t1 MTR_7g053290 31.148 183 117 7 82 259 192 370 3.22e-11 63.2
MS.gene003992.t1 MTR_6g035395 25.882 255 168 7 12 261 2 240 9.13e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003992.t1 AT1G07440 63.602 261 94 1 7 267 4 263 1.05e-122 350
MS.gene003992.t1 AT2G29150 64.259 263 92 2 1 262 1 262 8.49e-120 343
MS.gene003992.t1 AT5G06060 61.265 253 98 0 10 262 4 256 3.50e-119 342
MS.gene003992.t1 AT2G29350 64.122 262 93 1 1 262 1 261 1.90e-118 340
MS.gene003992.t1 AT2G29340 61.240 258 100 0 10 267 2 259 2.03e-118 340
MS.gene003992.t1 AT2G29340 61.240 258 100 0 10 267 2 259 8.61e-118 340
MS.gene003992.t1 AT2G29290 63.178 258 95 0 10 267 2 259 1.59e-117 337
MS.gene003992.t1 AT2G29360 64.259 263 93 1 1 262 1 263 1.59e-117 338
MS.gene003992.t1 AT2G30670 61.660 253 97 0 10 262 2 254 8.88e-116 333
MS.gene003992.t1 AT2G29310 60.000 255 102 0 10 264 2 256 3.28e-112 324
MS.gene003992.t1 AT2G29370 61.597 263 100 1 1 262 1 263 2.44e-111 322
MS.gene003992.t1 AT1G07450 63.347 251 91 1 12 262 5 254 1.79e-110 319
MS.gene003992.t1 AT2G29260 59.363 251 102 0 12 262 65 315 5.93e-110 320
MS.gene003992.t1 AT2G29330 57.752 258 109 0 10 267 2 259 2.97e-109 316
MS.gene003992.t1 AT2G29320 58.203 256 106 1 13 267 11 266 1.42e-107 312
MS.gene003992.t1 AT2G29300 57.708 253 106 1 10 261 2 254 3.55e-106 308
MS.gene003992.t1 AT2G29290 63.913 230 83 0 33 262 8 237 4.15e-105 305
MS.gene003992.t1 AT2G29300 57.540 252 106 1 10 260 2 253 7.66e-105 306
MS.gene003992.t1 AT2G29350 64.126 223 79 1 40 262 2 223 4.67e-101 294
MS.gene003992.t1 AT2G29310 59.914 232 93 0 31 262 21 252 3.77e-99 291
MS.gene003992.t1 AT2G29320 56.723 238 102 1 31 267 11 248 6.02e-96 282
MS.gene003992.t1 AT2G29350 64.423 208 74 0 1 208 1 208 2.37e-92 272
MS.gene003992.t1 AT2G29340 58.000 200 84 0 10 209 2 201 1.77e-85 254
MS.gene003992.t1 AT2G29340 58.000 200 84 0 10 209 2 201 1.77e-85 254
MS.gene003992.t1 AT2G29310 56.500 200 87 0 10 209 2 201 4.06e-81 243
MS.gene003992.t1 AT2G29320 56.545 191 82 1 13 202 11 201 1.22e-75 229
MS.gene003992.t1 AT1G07440 60.843 166 65 0 7 172 4 169 1.38e-71 218
MS.gene003992.t1 AT2G29310 55.307 179 80 0 31 209 21 199 4.43e-68 209
MS.gene003992.t1 AT2G29170 62.745 102 37 1 1 101 1 102 1.41e-38 131
MS.gene003992.t1 AT4G05530 31.707 246 163 4 15 259 9 250 2.63e-30 114
MS.gene003992.t1 AT3G03980 31.852 270 163 7 5 258 4 268 7.67e-29 110
MS.gene003992.t1 AT3G55310 30.078 256 168 7 15 261 17 270 4.42e-27 106
MS.gene003992.t1 AT1G24360 32.377 244 158 6 21 261 80 319 1.10e-26 106
MS.gene003992.t1 AT4G13180 31.061 264 172 7 5 261 3 263 1.13e-26 105
MS.gene003992.t1 AT1G63380 30.739 257 166 7 15 261 15 269 8.68e-26 102
MS.gene003992.t1 AT1G63380 30.739 257 166 7 15 261 17 271 8.74e-26 103
MS.gene003992.t1 AT1G63380 30.739 257 166 7 15 261 19 273 1.10e-25 102
MS.gene003992.t1 AT3G55290 29.297 256 170 7 15 261 17 270 1.37e-25 102
MS.gene003992.t1 AT3G04000 31.321 265 162 8 15 265 14 272 1.38e-25 102
MS.gene003992.t1 AT1G63380 30.739 257 166 7 15 261 22 276 1.39e-25 102
MS.gene003992.t1 AT3G55290 29.297 256 170 7 15 261 18 271 1.54e-25 102
MS.gene003992.t1 AT1G54870 32.443 262 154 10 15 262 82 334 8.83e-25 101
MS.gene003992.t1 AT5G18210 30.000 260 161 7 14 259 7 259 9.72e-25 99.8
MS.gene003992.t1 AT1G54870 32.443 262 154 10 15 262 84 336 1.10e-24 101
MS.gene003992.t1 AT3G05260 32.707 266 165 8 7 262 27 288 1.75e-24 99.8
MS.gene003992.t1 AT3G12800 28.346 254 172 4 15 259 10 262 2.00e-24 99.8
MS.gene003992.t1 AT1G62610 29.961 257 168 7 15 261 13 267 2.74e-24 99.0
MS.gene003992.t1 AT1G62610 29.961 257 168 7 15 261 19 273 2.93e-24 99.0
MS.gene003992.t1 AT1G62610 29.961 257 168 7 15 261 15 269 2.96e-24 99.0
MS.gene003992.t1 AT1G62610 29.961 257 168 7 15 261 14 268 3.00e-24 99.0
MS.gene003992.t1 AT5G18210 30.165 242 148 7 14 241 7 241 1.09e-21 92.0
MS.gene003992.t1 AT2G17845 27.734 256 171 7 15 258 47 300 5.44e-21 90.5
MS.gene003992.t1 AT3G46170 27.344 256 175 7 15 261 26 279 6.48e-21 90.1
MS.gene003992.t1 AT2G47120 28.125 256 174 9 11 261 2 252 5.90e-20 86.7
MS.gene003992.t1 AT2G47120 28.175 252 171 9 15 261 7 253 9.20e-20 86.3
MS.gene003992.t1 AT3G51680 27.586 290 180 11 1 266 20 303 1.92e-18 83.6
MS.gene003992.t1 AT3G42960 29.588 267 164 10 10 260 3 261 1.20e-17 80.9
MS.gene003992.t1 AT3G26760 28.044 271 170 9 5 260 30 290 2.21e-17 80.5
MS.gene003992.t1 AT4G03140 26.172 256 175 6 15 260 78 329 3.57e-17 80.5
MS.gene003992.t1 AT1G52340 27.839 273 155 8 15 260 18 275 1.99e-15 74.7
MS.gene003992.t1 AT2G47130 27.308 260 172 9 11 261 2 253 2.47e-15 73.9
MS.gene003992.t1 AT3G29260 27.757 263 167 8 11 261 2 253 3.41e-15 73.6
MS.gene003992.t1 AT3G06060 28.500 200 132 5 9 203 31 224 2.67e-14 72.0
MS.gene003992.t1 AT3G06060 28.500 200 132 5 9 203 48 241 4.09e-14 71.6
MS.gene003992.t1 AT3G26770 27.273 264 163 8 15 260 41 293 8.71e-14 70.5
MS.gene003992.t1 AT5G19200 26.852 216 149 4 9 220 29 239 1.03e-12 67.4
MS.gene003992.t1 AT3G03330 26.531 196 135 5 14 202 40 233 2.14e-12 66.6
MS.gene003992.t1 AT1G10310 31.016 187 125 4 19 204 19 202 6.37e-12 64.3
MS.gene003992.t1 AT5G65205 26.596 188 127 5 21 205 12 191 3.14e-11 62.8
MS.gene003992.t1 AT3G29250 26.894 264 177 9 11 265 2 258 4.64e-11 62.0
MS.gene003992.t1 AT3G29250 26.923 260 174 9 15 265 42 294 7.96e-11 61.6
MS.gene003992.t1 AT3G29250 26.923 260 174 9 15 265 44 296 9.55e-11 61.6

Find 63 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCAAGATTTCTCATTTC+TGG 0.136218 4.3:-39198810 MS.gene003992:CDS
CAAGCCCAGCTTATTGTAGA+AGG 0.344955 4.3:+39197854 None:intergenic
GTAAAATCTAGTGATTGTTT+TGG 0.345117 4.3:+39198833 None:intergenic
CCTGCAGCCTCTTTCATAAC+AGG 0.358569 4.3:-39197919 MS.gene003992:CDS
ACTGGTGGATCCAAAGGAAT+AGG 0.388939 4.3:-39199658 MS.gene003992:CDS
GGACAGACCATTTGTATTGA+TGG 0.394810 4.3:-39197898 MS.gene003992:CDS
AGAACCCCTCTTGGACGTAT+TGG 0.397142 4.3:-39197985 MS.gene003992:CDS
AGATAGCAACCCTATTCCTT+TGG 0.397711 4.3:+39199648 None:intergenic
TTCATTTCAAGAACCCCTCT+TGG 0.404796 4.3:-39197994 MS.gene003992:CDS
TCAATGAATGCTTACATCAA+TGG 0.405589 4.3:-39199112 MS.gene003992:CDS
GCAGCAAGAGGGGTTCTGAT+TGG 0.447876 4.3:+39198457 None:intergenic
CAATGAATGCTTACATCAAT+GGG 0.449372 4.3:-39199111 MS.gene003992:CDS
ACCAAGGAAGACACCTCTTC+TGG 0.466532 4.3:+39197958 None:intergenic
GAGTTTGAAGCTTTGAGTAA+TGG 0.471691 4.3:+39198740 None:intergenic
TATGACTAGGTATGATATAG+TGG 0.472016 4.3:-39199192 MS.gene003992:intron
AGAGGGGTTCTGATTGGCCC+TGG 0.476277 4.3:+39198463 None:intergenic
AAATAGTAAGTGGTCTTTGA+AGG 0.483818 4.3:-39199698 MS.gene003992:CDS
ACCAGAAGAGGTGTCTTCCT+TGG 0.491068 4.3:-39197959 MS.gene003992:CDS
TGGAGCAATTAGCAGAGCTA+GGG 0.491202 4.3:-39199172 MS.gene003992:CDS
ATGACAGCTCTGGTCACTGG+TGG 0.504668 4.3:-39199673 MS.gene003992:CDS
ACCATCTATAGTGCAGCAAA+AGG 0.506661 4.3:-39198662 MS.gene003992:intron
TTTGAAGGGGATGACAGCTC+TGG 0.513224 4.3:-39199683 MS.gene003992:CDS
GGGATGACAGCTCTGGTCAC+TGG 0.516153 4.3:-39199676 MS.gene003992:CDS
TGAGTAATGGATGTGCAAGC+TGG 0.522910 4.3:+39198753 None:intergenic
AATAGTAAGTGGTCTTTGAA+GGG 0.525324 4.3:-39199697 MS.gene003992:CDS
GTGGAGCAATTAGCAGAGCT+AGG 0.526426 4.3:-39199173 MS.gene003992:CDS
AGGACTAATTGTGTTGCACC+AGG 0.529569 4.3:-39198481 MS.gene003992:CDS
TTACATCAATGGGTCACAAA+AGG 0.532043 4.3:-39199101 MS.gene003992:CDS
AGACCATTTGTATTGATGGC+GGG 0.533740 4.3:-39197894 MS.gene003992:CDS
CAAGTAGCAGAAATAGTAAG+TGG 0.538795 4.3:-39199708 MS.gene003992:CDS
CTGGTCACTGGTGGATCCAA+AGG 0.539538 4.3:-39199664 MS.gene003992:CDS
TAACCCGCCATCAATACAAA+TGG 0.540084 4.3:+39197891 None:intergenic
AGAGTCTCTTCTGAGTTCAA+TGG 0.543714 4.3:-39199014 MS.gene003992:CDS
ACAAAAGGATACAAAATCAC+TGG 0.547408 4.3:-39199086 MS.gene003992:CDS
CCTGTTATGAAAGAGGCTGC+AGG 0.552564 4.3:+39197919 None:intergenic
GGGGTAGCATCACTAAATGT+AGG 0.552808 4.3:-39198686 MS.gene003992:CDS
CTGGTGGATCCAAAGGAATA+GGG 0.554228 4.3:-39199657 MS.gene003992:intron
CCACTGTACACACTTGTGCT+AGG 0.562221 4.3:-39199148 MS.gene003992:CDS
TTTCATGTCCTCCATTGGTG+GGG 0.574535 4.3:-39198705 MS.gene003992:CDS
GAAATTTAGGTGAACAATGT+GGG 0.576001 4.3:-39198866 MS.gene003992:intron
AAATTACTTCTGCAGCAAGA+GGG 0.582091 4.3:+39198446 None:intergenic
TAGTGATGCTACCCCACCAA+TGG 0.589871 4.3:+39198694 None:intergenic
AGTGGGCTAGAGACAACATA+AGG 0.591685 4.3:-39198501 MS.gene003992:CDS
GTTCTCCAATACGTCCAAGA+GGG 0.595929 4.3:+39197980 None:intergenic
AAAATTACTTCTGCAGCAAG+AGG 0.596709 4.3:+39198445 None:intergenic
AGAAGAGGTGTCTTCCTTGG+TGG 0.599777 4.3:-39197956 MS.gene003992:CDS
AAGAGGCTGCAGGTAAGCAT+AGG 0.600954 4.3:+39197929 None:intergenic
CAGACCATTTGTATTGATGG+CGG 0.601299 4.3:-39197895 MS.gene003992:CDS
TGAAATTTAGGTGAACAATG+TGG 0.603162 4.3:-39198867 MS.gene003992:intron
GTCATCTCGTGCACAAAGAG+AGG 0.604943 4.3:-39199048 MS.gene003992:CDS
AATTACTTCTGCAGCAAGAG+GGG 0.609401 4.3:+39198447 None:intergenic
ATAGTAAGTGGTCTTTGAAG+GGG 0.610704 4.3:-39199696 MS.gene003992:CDS
GGTCTGTCCTGTTATGAAAG+AGG 0.618109 4.3:+39197912 None:intergenic
TGATGCTACCCCACCAATGG+AGG 0.621694 4.3:+39198697 None:intergenic
TATTAAGGAGAAATGGCAGA+GGG 0.641387 4.3:-39199736 None:intergenic
ACGTATTGGAGAACCAGAAG+AGG 0.658963 4.3:-39197971 MS.gene003992:CDS
GTATTAAGGAGAAATGGCAG+AGG 0.659922 4.3:-39199737 None:intergenic
GGAGCAATTAGCAGAGCTAG+GGG 0.662491 4.3:-39199171 MS.gene003992:CDS
TTCTCCAATACGTCCAAGAG+GGG 0.662521 4.3:+39197981 None:intergenic
GGACTAATTGTGTTGCACCA+GGG 0.676221 4.3:-39198480 MS.gene003992:CDS
TAAGCATAGGAATGCCACCA+AGG 0.681785 4.3:+39197942 None:intergenic
GGTTCTCCAATACGTCCAAG+AGG 0.697030 4.3:+39197979 None:intergenic
CCTAGCACAAGTGTGTACAG+TGG 0.731390 4.3:+39199148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATAAATAAATAAATGT+CGG + chr4.3:39198702-39198721 None:intergenic 10.0%
!! TTTATTTATGTATGAAATTT+AGG - chr4.3:39198709-39198728 MS.gene003992:CDS 10.0%
!! ATCAATTAACTACAAAATTT+GGG + chr4.3:39198117-39198136 None:intergenic 15.0%
!!! TATTTTTTTCACCTTTTTAT+AGG - chr4.3:39198652-39198671 MS.gene003992:intron 15.0%
!! ACTAAACAAATCCTATAAAA+AGG + chr4.3:39198666-39198685 None:intergenic 20.0%
!! ATATATGTAATTTACAATGC+AGG - chr4.3:39199029-39199048 MS.gene003992:CDS 20.0%
!! GATCAATTAACTACAAAATT+TGG + chr4.3:39198118-39198137 None:intergenic 20.0%
!! TAAAAAACGAGTTTATAAGT+AGG + chr4.3:39199449-39199468 None:intergenic 20.0%
!! TGTATTATTAATTGCTTACA+AGG + chr4.3:39198612-39198631 None:intergenic 20.0%
!! TTGTTAAAATATTGTTCCAT+TGG + chr4.3:39198300-39198319 None:intergenic 20.0%
!!! TACTTATAAACTCGTTTTTT+AGG - chr4.3:39199448-39199467 MS.gene003992:intron 20.0%
!!! TAGACACAATCAAATTTTTT+TGG + chr4.3:39199384-39199403 None:intergenic 20.0%
! AAACCAGCTTACAAAAAATT+TGG - chr4.3:39199058-39199077 MS.gene003992:CDS 25.0%
! ATGTGAATTAAACTATGACT+AGG - chr4.3:39198383-39198402 MS.gene003992:intron 25.0%
! CTTTGACTAATAATAACCAA+TGG - chr4.3:39198281-39198300 MS.gene003992:intron 25.0%
! TCAACTAATTTCATGATCTA+TGG + chr4.3:39198055-39198074 None:intergenic 25.0%
!! GTAAAATCTAGTGATTGTTT+TGG + chr4.3:39198758-39198777 None:intergenic 25.0%
AAAAAATTTGGCATGTGAGT+GGG - chr4.3:39199070-39199089 MS.gene003992:CDS 30.0%
AAATAGTAAGTGGTCTTTGA+AGG - chr4.3:39197890-39197909 MS.gene003992:CDS 30.0%
AATAGTAAGTGGTCTTTGAA+GGG - chr4.3:39197891-39197910 MS.gene003992:CDS 30.0%
ACAAAAGGATACAAAATCAC+TGG - chr4.3:39198502-39198521 MS.gene003992:CDS 30.0%
AGCAAAAGGTAACTATTTCA+TGG - chr4.3:39198940-39198959 MS.gene003992:intron 30.0%
CAATGAATGCTTACATCAAT+GGG - chr4.3:39198477-39198496 MS.gene003992:CDS 30.0%
GAAATTTAGGTGAACAATGT+GGG - chr4.3:39198722-39198741 MS.gene003992:CDS 30.0%
GTCCTATATCGAATGAAATA+TGG + chr4.3:39199474-39199493 None:intergenic 30.0%
TAATCCAACTCCTAGAAAAT+CGG - chr4.3:39199402-39199421 MS.gene003992:intron 30.0%
TATGACTAGGTATGATATAG+TGG - chr4.3:39198396-39198415 MS.gene003992:intron 30.0%
TCAATGAATGCTTACATCAA+TGG - chr4.3:39198476-39198495 MS.gene003992:CDS 30.0%
TGAAATTTAGGTGAACAATG+TGG - chr4.3:39198721-39198740 MS.gene003992:CDS 30.0%
TTAACTCAAAGCTAATTTCC+TGG - chr4.3:39198179-39198198 MS.gene003992:intron 30.0%
!!! ATCTTTTAAGATCTGCAAGA+AGG + chr4.3:39199556-39199575 None:intergenic 30.0%
!!! ATGCCAAATTTTTTGTAAGC+TGG + chr4.3:39199064-39199083 None:intergenic 30.0%
AAAATTACTTCTGCAGCAAG+AGG + chr4.3:39199146-39199165 None:intergenic 35.0%
AAATTACTTCTGCAGCAAGA+GGG + chr4.3:39199145-39199164 None:intergenic 35.0%
CAAAAAATTTGGCATGTGAG+TGG - chr4.3:39199069-39199088 MS.gene003992:CDS 35.0%
CAAGTAGCAGAAATAGTAAG+TGG - chr4.3:39197880-39197899 MS.gene003992:CDS 35.0%
GAATTAGACTATTGACAACC+AGG + chr4.3:39198200-39198219 None:intergenic 35.0%
GCACAAAAGAATAAGAGAAG+AGG + chr4.3:39197977-39197996 None:intergenic 35.0%
GGCCATATTTCATTCGATAT+AGG - chr4.3:39199469-39199488 MS.gene003992:intron 35.0%
TGAGCAAGATTTCTCATTTC+TGG - chr4.3:39198778-39198797 MS.gene003992:CDS 35.0%
TTACATCAATGGGTCACAAA+AGG - chr4.3:39198487-39198506 MS.gene003992:CDS 35.0%
TTGGTATGTGACTAATGAGT+TGG + chr4.3:39199365-39199384 None:intergenic 35.0%
! AAAACTAGTTTGTCCGATGT+GGG - chr4.3:39199330-39199349 MS.gene003992:intron 35.0%
! ATAGTAAGTGGTCTTTGAAG+GGG - chr4.3:39197892-39197911 MS.gene003992:CDS 35.0%
! ATTGTTTTCATGTCCTCCAT+TGG - chr4.3:39198878-39198897 MS.gene003992:intron 35.0%
! TAAAACTAGTTTGTCCGATG+TGG - chr4.3:39199329-39199348 MS.gene003992:intron 35.0%
!! ACAGTATTAGCCGATTTTCT+AGG + chr4.3:39199415-39199434 None:intergenic 35.0%
!! GAGTTTGAAGCTTTGAGTAA+TGG + chr4.3:39198851-39198870 None:intergenic 35.0%
AATTACTTCTGCAGCAAGAG+GGG + chr4.3:39199144-39199163 None:intergenic 40.0%
ACCATCTATAGTGCAGCAAA+AGG - chr4.3:39198926-39198945 MS.gene003992:intron 40.0%
AGAGTCTCTTCTGAGTTCAA+TGG - chr4.3:39198574-39198593 MS.gene003992:intron 40.0%
AGATAGCAACCCTATTCCTT+TGG + chr4.3:39197943-39197962 None:intergenic 40.0%
CAATAGTCACGATGCTTGTT+TGG - chr4.3:39198227-39198246 MS.gene003992:intron 40.0%
GGACAGACCATTTGTATTGA+TGG - chr4.3:39199690-39199709 MS.gene003992:CDS 40.0%
TAACCCGCCATCAATACAAA+TGG + chr4.3:39199700-39199719 None:intergenic 40.0%
TTCATTTCAAGAACCCCTCT+TGG - chr4.3:39199594-39199613 MS.gene003992:intron 40.0%
! AAGCATCGTGACTATTGACT+AGG + chr4.3:39198224-39198243 None:intergenic 40.0%
! ACCTTTTGCTGCACTATAGA+TGG + chr4.3:39198930-39198949 None:intergenic 40.0%
! AGACCATTTGTATTGATGGC+GGG - chr4.3:39199694-39199713 MS.gene003992:CDS 40.0%
! CAGACCATTTGTATTGATGG+CGG - chr4.3:39199693-39199712 MS.gene003992:CDS 40.0%
! TTTTCATGTCCTCCATTGGT+GGG - chr4.3:39198882-39198901 MS.gene003992:intron 40.0%
!! TTAGCCGATTTTCTAGGAGT+TGG + chr4.3:39199409-39199428 None:intergenic 40.0%
ACGTATTGGAGAACCAGAAG+AGG - chr4.3:39199617-39199636 MS.gene003992:intron 45.0%
AGGACTAATTGTGTTGCACC+AGG - chr4.3:39199107-39199126 MS.gene003992:CDS 45.0%
GGACTAATTGTGTTGCACCA+GGG - chr4.3:39199108-39199127 MS.gene003992:CDS 45.0%
GGGGTAGCATCACTAAATGT+AGG - chr4.3:39198902-39198921 MS.gene003992:intron 45.0%
GGTCTGTCCTGTTATGAAAG+AGG + chr4.3:39199679-39199698 None:intergenic 45.0%
GTTCTCCAATACGTCCAAGA+GGG + chr4.3:39199611-39199630 None:intergenic 45.0%
TAAGCATAGGAATGCCACCA+AGG + chr4.3:39199649-39199668 None:intergenic 45.0%
TGGAGCAATTAGCAGAGCTA+GGG - chr4.3:39198416-39198435 MS.gene003992:intron 45.0%
TTCTCCAATACGTCCAAGAG+GGG + chr4.3:39199610-39199629 None:intergenic 45.0%
TTGGACTAATCCTCCCACAT+CGG + chr4.3:39199346-39199365 None:intergenic 45.0%
TTTCATGTCCTCCATTGGTG+GGG - chr4.3:39198883-39198902 MS.gene003992:intron 45.0%
! ACTGGTGGATCCAAAGGAAT+AGG - chr4.3:39197930-39197949 MS.gene003992:CDS 45.0%
! CTGGTGGATCCAAAGGAATA+GGG - chr4.3:39197931-39197950 MS.gene003992:CDS 45.0%
! GTTTTCATGTCCTCCATTGG+TGG - chr4.3:39198881-39198900 MS.gene003992:intron 45.0%
!! AGTGGGCTAGAGACAACATA+AGG - chr4.3:39199087-39199106 MS.gene003992:CDS 45.0%
!! TGAGTAATGGATGTGCAAGC+TGG + chr4.3:39198838-39198857 None:intergenic 45.0%
AAGAGGCTGCAGGTAAGCAT+AGG + chr4.3:39199662-39199681 None:intergenic 50.0%
ACCAAGGAAGACACCTCTTC+TGG + chr4.3:39199633-39199652 None:intergenic 50.0%
AGAACCCCTCTTGGACGTAT+TGG - chr4.3:39199603-39199622 MS.gene003992:intron 50.0%
CCACTGTACACACTTGTGCT+AGG - chr4.3:39198440-39198459 MS.gene003992:intron 50.0%
CCTAGCACAAGTGTGTACAG+TGG + chr4.3:39198443-39198462 None:intergenic 50.0%
CCTGCAGCCTCTTTCATAAC+AGG - chr4.3:39199669-39199688 MS.gene003992:CDS 50.0%
CCTGTTATGAAAGAGGCTGC+AGG + chr4.3:39199672-39199691 None:intergenic 50.0%
GGAGCAATTAGCAGAGCTAG+GGG - chr4.3:39198417-39198436 MS.gene003992:intron 50.0%
GGTTCTCCAATACGTCCAAG+AGG + chr4.3:39199612-39199631 None:intergenic 50.0%
GTCATCTCGTGCACAAAGAG+AGG - chr4.3:39198540-39198559 MS.gene003992:CDS 50.0%
GTGGAGCAATTAGCAGAGCT+AGG - chr4.3:39198415-39198434 MS.gene003992:intron 50.0%
TAGTGATGCTACCCCACCAA+TGG + chr4.3:39198897-39198916 None:intergenic 50.0%
TTTGAAGGGGATGACAGCTC+TGG - chr4.3:39197905-39197924 MS.gene003992:CDS 50.0%
! ACTAGTTTGTCCGATGTGGG+AGG - chr4.3:39199333-39199352 MS.gene003992:intron 50.0%
!! ACCAGAAGAGGTGTCTTCCT+TGG - chr4.3:39199629-39199648 MS.gene003992:intron 50.0%
!! AGAAGAGGTGTCTTCCTTGG+TGG - chr4.3:39199632-39199651 MS.gene003992:intron 50.0%
TGATGCTACCCCACCAATGG+AGG + chr4.3:39198894-39198913 None:intergenic 55.0%
! ATGACAGCTCTGGTCACTGG+TGG - chr4.3:39197915-39197934 MS.gene003992:CDS 55.0%
! CTGGTCACTGGTGGATCCAA+AGG - chr4.3:39197924-39197943 MS.gene003992:CDS 55.0%
! GCAGCAAGAGGGGTTCTGAT+TGG + chr4.3:39199134-39199153 None:intergenic 55.0%
! AGAGGGGTTCTGATTGGCCC+TGG + chr4.3:39199128-39199147 None:intergenic 60.0%
! GGGATGACAGCTCTGGTCAC+TGG - chr4.3:39197912-39197931 MS.gene003992:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 39197864 39199746 39197864 ID=MS.gene003992
chr4.3 mRNA 39197864 39199746 39197864 ID=MS.gene003992.t1;Parent=MS.gene003992
chr4.3 exon 39199658 39199746 39199658 ID=MS.gene003992.t1.exon1;Parent=MS.gene003992.t1
chr4.3 CDS 39199658 39199746 39199658 ID=cds.MS.gene003992.t1;Parent=MS.gene003992.t1
chr4.3 exon 39198998 39199205 39198998 ID=MS.gene003992.t1.exon2;Parent=MS.gene003992.t1
chr4.3 CDS 39198998 39199205 39198998 ID=cds.MS.gene003992.t1;Parent=MS.gene003992.t1
chr4.3 exon 39198663 39198879 39198663 ID=MS.gene003992.t1.exon3;Parent=MS.gene003992.t1
chr4.3 CDS 39198663 39198879 39198663 ID=cds.MS.gene003992.t1;Parent=MS.gene003992.t1
chr4.3 exon 39198453 39198559 39198453 ID=MS.gene003992.t1.exon4;Parent=MS.gene003992.t1
chr4.3 CDS 39198453 39198559 39198453 ID=cds.MS.gene003992.t1;Parent=MS.gene003992.t1
chr4.3 exon 39197864 39198046 39197864 ID=MS.gene003992.t1.exon5;Parent=MS.gene003992.t1
chr4.3 CDS 39197864 39198046 39197864 ID=cds.MS.gene003992.t1;Parent=MS.gene003992.t1
Gene Sequence

>MS.gene003992

ATGGCAGAGGGAAACACAAGTAGCAGAAATAGTAAGTGGTCTTTGAAGGGGATGACAGCTCTGGTCACTGGTGGATCCAAAGGAATAGGGTTGCTATCTTTTGTTCTTTTCCTCTTCTCTTATTCTTTTGTGCAGATTATTTTGCTTATTTCTCTTGTTGCAAATTAATTGATCTTTTAGCAGCTCTACCATAGATCATGAAATTAGTTGAGTTAGTCACAAATATACTATTTTAATTTTTAGCTAGCTACCCAAATTTTGTAGTTAATTGATCATAACTAATGTTTTTTGTTTAAAACTATAACTAATTCTAAATTAACTCAAAGCTAATTTCCTGGTTGTCAATAGTCTAATTCACCTAGTCAATAGTCACGATGCTTGTTTGGAAAAATTTGTAAAGCAAGTCAAACATGTTTACTTTGACTAATAATAACCAATGGAACAATATTTTAACAAATTAAATATGATAGTCTTATATAAAAAATATTTATGAATCATGATTTTTCTCACTGTTTATATATGTGAATTAAACTATGACTAGGTATGATATAGTGGAGCAATTAGCAGAGCTAGGGGCCACTGTACACACTTGTGCTAGGAATGAAGCTCAACTCAATGAATGCTTACATCAATGGGTCACAAAAGGATACAAAATCACTGGTTCAGTCTGTGATGTGTCATCTCGTGCACAAAGAGAGGAGCTCATAGCTAGAGTCTCTTCTGAGTTCAATGGCAAACTCAATATCCTTGTAAGCAATTAATAATACAATACATGAAATTGAAGTTACTATTTTTTTCACCTTTTTATAGGATTTGTTTAGTTTGTTACATTAGACCGACATTTATTTATTTATGTATGAAATTTAGGTGAACAATGTGGGAACAAACATACCAAAACAATCACTAGATTTTACTGAGCAAGATTTCTCATTTCTGGTGAATACAAATCTTGAATCTGCTTTTCACATAAGCCAGCTTGCACATCCATTACTCAAAGCTTCAAACTCTGCAAGCATTGTTTTCATGTCCTCCATTGGTGGGGTAGCATCACTAAATGTAGGAACCATCTATAGTGCAGCAAAAGGTAACTATTTCATGGTTTTAATTTAGTAAAATTGACACTGTAATTTTTTTTTTTTGAACTAAAAATGTTTAATTTTAAAATATATATGTAATTTACAATGCAGGAGCAATAAACCAGCTTACAAAAAATTTGGCATGTGAGTGGGCTAGAGACAACATAAGGACTAATTGTGTTGCACCAGGGCCAATCAGAACCCCTCTTGCTGCAGAAGTAATTTTCTATACTTGTTGTTTGTGTATAATGATTTTACACTTTATCTAAAAAAATTGTTTCACTCACAATTATCTAGTTACATCTCACGATGTACATATTTGTTGAGAAAATAATATCAAATGATGATATATAATTCTTAAAATTTGAGTTGCGCTTAACTCAACTCTATAAAACTAGTTTGTCCGATGTGGGAGGATTAGTCCAACTCATTAGTCACATACCAAAAAAATTTGATTGTGTCTAATCCAACTCCTAGAAAATCGGCTAATACTGTGTTACTTGTCTCCTACTTATAAACTCGTTTTTTAGGCCATATTTCATTCGATATAGGACTTTTAATAATAATTGAATAAATATGTAAAAAAGAGTTACATGTTAATGCATAGTTATTTCCTTCTTGCAGATCTTAAAAGATGAAAAACTTCTCGATGCTTTCATTTCAAGAACCCCTCTTGGACGTATTGGAGAACCAGAAGAGGTGTCTTCCTTGGTGGCATTCCTATGCTTACCTGCAGCCTCTTTCATAACAGGACAGACCATTTGTATTGATGGCGGGTTAACTGTCAACTGTCTCCTTCTACAATAA
Protein sequence

>MS.gene003992.t1

MAEGNTSSRNSKWSLKGMTALVTGGSKGIGYDIVEQLAELGATVHTCARNEAQLNECLHQWVTKGYKITGSVCDVSSRAQREELIARVSSEFNGKLNILVNNVGTNIPKQSLDFTEQDFSFLVNTNLESAFHISQLAHPLLKASNSASIVFMSSIGGVASLNVGTIYSAAKGAINQLTKNLACEWARDNIRTNCVAPGPIRTPLAAEILKDEKLLDAFISRTPLGRIGEPEEVSSLVAFLCLPAASFITGQTICIDGGLTVNCLLLQ