AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30551


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30551.t1 MTR_4g064887 94.382 267 15 0 1 267 1 267 0.0 518
MS.gene30551.t1 MTR_4g064887 92.823 209 15 0 1 209 1 209 2.51e-144 404
MS.gene30551.t1 MTR_3g068155 61.004 259 101 0 3 261 7 265 3.88e-121 347
MS.gene30551.t1 MTR_3g068070 59.160 262 107 0 1 262 1 262 1.16e-118 340
MS.gene30551.t1 MTR_3g068175 62.302 252 95 0 11 262 13 264 1.01e-117 338
MS.gene30551.t1 MTR_4g064883 62.451 253 95 0 10 262 9 261 7.93e-116 333
MS.gene30551.t1 MTR_3g068175 61.328 256 95 1 11 262 13 268 2.51e-115 332
MS.gene30551.t1 MTR_3g068085 59.542 262 106 0 1 262 1 262 3.97e-113 327
MS.gene30551.t1 MTR_3g068065 59.677 248 100 0 15 262 17 264 1.25e-110 320
MS.gene30551.t1 MTR_7g063270 56.818 264 110 2 1 260 1 264 4.82e-109 316
MS.gene30551.t1 MTR_7g063390 55.805 267 111 3 1 261 1 266 3.38e-105 306
MS.gene30551.t1 MTR_7g063260 55.094 265 114 2 1 260 1 265 2.75e-104 304
MS.gene30551.t1 MTR_7g063320 53.962 265 118 2 1 261 1 265 1.01e-101 297
MS.gene30551.t1 MTR_7g063360 54.135 266 117 3 1 261 1 266 3.60e-101 296
MS.gene30551.t1 MTR_7g063330 53.232 263 120 1 1 260 1 263 1.32e-98 289
MS.gene30551.t1 MTR_4g064883 62.000 200 76 0 10 209 9 208 3.53e-87 258
MS.gene30551.t1 MTR_7g063270 49.242 264 81 4 1 260 1 215 1.62e-82 247
MS.gene30551.t1 MTR_4g132850 32.927 246 160 4 15 259 7 248 2.61e-33 122
MS.gene30551.t1 MTR_3g085740 33.333 246 153 7 21 261 81 320 9.19e-29 111
MS.gene30551.t1 MTR_7g094510 32.400 250 161 5 15 258 6 253 1.14e-26 104
MS.gene30551.t1 MTR_8g442750 30.888 259 158 6 15 259 14 265 9.25e-26 103
MS.gene30551.t1 MTR_4g131740 29.434 265 175 6 8 263 33 294 4.35e-25 101
MS.gene30551.t1 MTR_7g094520 29.880 251 168 4 15 259 11 259 9.78e-25 99.8
MS.gene30551.t1 MTR_4g052350 31.518 257 155 11 15 261 14 259 7.86e-23 94.7
MS.gene30551.t1 MTR_4g058840 28.346 254 175 5 15 261 11 264 1.26e-21 91.7
MS.gene30551.t1 MTR_4g058820 28.346 254 175 5 15 261 11 264 1.26e-21 91.7
MS.gene30551.t1 MTR_4g058810 27.953 254 176 5 15 261 11 264 4.20e-21 90.1
MS.gene30551.t1 MTR_4g052340 30.189 265 150 12 15 262 14 260 7.34e-21 89.4
MS.gene30551.t1 MTR_7g105460 28.889 270 174 9 1 261 1 261 9.25e-21 89.4
MS.gene30551.t1 MTR_4g052320 30.303 264 160 9 10 261 3 254 2.34e-20 88.2
MS.gene30551.t1 MTR_1g051165 25.769 260 179 6 15 261 14 272 2.91e-20 88.2
MS.gene30551.t1 MTR_7g113650 29.572 257 170 6 15 263 40 293 3.20e-20 88.2
MS.gene30551.t1 MTR_6g023990 28.195 266 180 7 1 259 1 262 4.06e-20 87.4
MS.gene30551.t1 MTR_3g020670 30.769 273 164 10 5 260 6 270 4.95e-20 87.4
MS.gene30551.t1 MTR_1196s0010 31.148 244 153 10 20 258 279 512 9.70e-20 88.6
MS.gene30551.t1 MTR_7g071680 27.491 291 173 8 6 266 20 302 2.93e-19 85.5
MS.gene30551.t1 MTR_6g023610 28.679 265 175 7 1 257 1 259 3.74e-19 84.7
MS.gene30551.t1 MTR_6g023590 28.571 266 178 7 1 259 1 261 3.77e-19 84.7
MS.gene30551.t1 MTR_1g068955 31.907 257 152 8 15 257 14 261 4.11e-19 85.1
MS.gene30551.t1 MTR_1g082760 28.516 256 172 6 15 262 40 292 7.48e-19 84.3
MS.gene30551.t1 MTR_4g052300 27.027 259 174 6 10 261 3 253 4.53e-18 81.6
MS.gene30551.t1 MTR_2g090165 28.195 266 171 9 11 264 2 259 8.46e-18 80.9
MS.gene30551.t1 MTR_6g023600 28.947 266 177 7 1 259 1 261 8.71e-18 80.9
MS.gene30551.t1 MTR_4g078630 28.214 280 161 12 5 260 8 271 1.52e-17 80.5
MS.gene30551.t1 MTR_1579s0020 43.750 80 44 1 181 260 1 79 1.66e-17 75.9
MS.gene30551.t1 MTR_6g023910 27.273 264 180 7 1 257 1 259 3.09e-17 79.7
MS.gene30551.t1 MTR_7g083870 27.376 263 164 6 15 260 35 287 9.52e-17 78.6
MS.gene30551.t1 MTR_6g023950 28.571 266 178 7 1 259 1 261 5.05e-16 76.3
MS.gene30551.t1 MTR_7g110160 28.125 256 158 7 11 261 2 236 7.02e-16 75.5
MS.gene30551.t1 MTR_6g023600 28.195 266 173 7 1 259 1 255 1.61e-15 74.7
MS.gene30551.t1 MTR_7g080410 28.646 192 119 4 22 202 45 229 3.43e-15 74.3
MS.gene30551.t1 MTR_7g080410 28.646 192 119 4 22 202 45 229 3.55e-15 74.3
MS.gene30551.t1 MTR_7g110130 26.641 259 177 8 11 261 2 255 3.93e-15 73.6
MS.gene30551.t1 MTR_7g105570 30.508 177 110 5 94 261 46 218 5.44e-15 72.8
MS.gene30551.t1 MTR_7g107670 25.283 265 180 6 8 260 26 284 8.64e-15 73.2
MS.gene30551.t1 MTR_6g041980 30.435 253 148 10 15 250 64 305 6.68e-14 70.9
MS.gene30551.t1 MTR_4g058830 27.922 154 107 3 112 261 57 210 1.21e-13 68.6
MS.gene30551.t1 MTR_7g110140 28.736 261 168 10 11 261 2 254 4.21e-13 67.8
MS.gene30551.t1 MTR_7g105590 26.596 188 133 4 15 200 8 192 2.49e-12 64.7
MS.gene30551.t1 MTR_7g105580 24.715 263 161 8 15 265 8 245 3.59e-12 65.1
MS.gene30551.t1 MTR_6g041980 33.333 159 99 5 5 160 54 208 6.24e-12 64.7
MS.gene30551.t1 MTR_7g053290 31.148 183 117 7 82 259 192 370 3.22e-11 63.2
MS.gene30551.t1 MTR_6g035395 25.882 255 168 7 12 261 2 240 9.13e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30551.t1 AT1G07440 63.602 261 94 1 7 267 4 263 1.05e-122 350
MS.gene30551.t1 AT2G29150 64.259 263 92 2 1 262 1 262 8.49e-120 343
MS.gene30551.t1 AT5G06060 61.265 253 98 0 10 262 4 256 3.50e-119 342
MS.gene30551.t1 AT2G29350 64.122 262 93 1 1 262 1 261 1.90e-118 340
MS.gene30551.t1 AT2G29340 61.240 258 100 0 10 267 2 259 2.03e-118 340
MS.gene30551.t1 AT2G29340 61.240 258 100 0 10 267 2 259 8.61e-118 340
MS.gene30551.t1 AT2G29290 63.178 258 95 0 10 267 2 259 1.59e-117 337
MS.gene30551.t1 AT2G29360 64.259 263 93 1 1 262 1 263 1.59e-117 338
MS.gene30551.t1 AT2G30670 61.660 253 97 0 10 262 2 254 8.88e-116 333
MS.gene30551.t1 AT2G29310 60.000 255 102 0 10 264 2 256 3.28e-112 324
MS.gene30551.t1 AT2G29370 61.597 263 100 1 1 262 1 263 2.44e-111 322
MS.gene30551.t1 AT1G07450 63.347 251 91 1 12 262 5 254 1.79e-110 319
MS.gene30551.t1 AT2G29260 59.363 251 102 0 12 262 65 315 5.93e-110 320
MS.gene30551.t1 AT2G29330 57.752 258 109 0 10 267 2 259 2.97e-109 316
MS.gene30551.t1 AT2G29320 58.203 256 106 1 13 267 11 266 1.42e-107 312
MS.gene30551.t1 AT2G29300 57.708 253 106 1 10 261 2 254 3.55e-106 308
MS.gene30551.t1 AT2G29290 63.913 230 83 0 33 262 8 237 4.15e-105 305
MS.gene30551.t1 AT2G29300 57.540 252 106 1 10 260 2 253 7.66e-105 306
MS.gene30551.t1 AT2G29350 64.126 223 79 1 40 262 2 223 4.67e-101 294
MS.gene30551.t1 AT2G29310 59.914 232 93 0 31 262 21 252 3.77e-99 291
MS.gene30551.t1 AT2G29320 56.723 238 102 1 31 267 11 248 6.02e-96 282
MS.gene30551.t1 AT2G29350 64.423 208 74 0 1 208 1 208 2.37e-92 272
MS.gene30551.t1 AT2G29340 58.000 200 84 0 10 209 2 201 1.77e-85 254
MS.gene30551.t1 AT2G29340 58.000 200 84 0 10 209 2 201 1.77e-85 254
MS.gene30551.t1 AT2G29310 56.500 200 87 0 10 209 2 201 4.06e-81 243
MS.gene30551.t1 AT2G29320 56.545 191 82 1 13 202 11 201 1.22e-75 229
MS.gene30551.t1 AT1G07440 60.843 166 65 0 7 172 4 169 1.38e-71 218
MS.gene30551.t1 AT2G29310 55.307 179 80 0 31 209 21 199 4.43e-68 209
MS.gene30551.t1 AT2G29170 62.745 102 37 1 1 101 1 102 1.41e-38 131
MS.gene30551.t1 AT4G05530 31.707 246 163 4 15 259 9 250 2.63e-30 114
MS.gene30551.t1 AT3G03980 31.852 270 163 7 5 258 4 268 7.67e-29 110
MS.gene30551.t1 AT3G55310 30.078 256 168 7 15 261 17 270 4.42e-27 106
MS.gene30551.t1 AT1G24360 32.377 244 158 6 21 261 80 319 1.10e-26 106
MS.gene30551.t1 AT4G13180 31.061 264 172 7 5 261 3 263 1.13e-26 105
MS.gene30551.t1 AT1G63380 30.739 257 166 7 15 261 15 269 8.68e-26 102
MS.gene30551.t1 AT1G63380 30.739 257 166 7 15 261 17 271 8.74e-26 103
MS.gene30551.t1 AT1G63380 30.739 257 166 7 15 261 19 273 1.10e-25 102
MS.gene30551.t1 AT3G55290 29.297 256 170 7 15 261 17 270 1.37e-25 102
MS.gene30551.t1 AT3G04000 31.321 265 162 8 15 265 14 272 1.38e-25 102
MS.gene30551.t1 AT1G63380 30.739 257 166 7 15 261 22 276 1.39e-25 102
MS.gene30551.t1 AT3G55290 29.297 256 170 7 15 261 18 271 1.54e-25 102
MS.gene30551.t1 AT1G54870 32.443 262 154 10 15 262 82 334 8.83e-25 101
MS.gene30551.t1 AT5G18210 30.000 260 161 7 14 259 7 259 9.72e-25 99.8
MS.gene30551.t1 AT1G54870 32.443 262 154 10 15 262 84 336 1.10e-24 101
MS.gene30551.t1 AT3G05260 32.707 266 165 8 7 262 27 288 1.75e-24 99.8
MS.gene30551.t1 AT3G12800 28.346 254 172 4 15 259 10 262 2.00e-24 99.8
MS.gene30551.t1 AT1G62610 29.961 257 168 7 15 261 13 267 2.74e-24 99.0
MS.gene30551.t1 AT1G62610 29.961 257 168 7 15 261 19 273 2.93e-24 99.0
MS.gene30551.t1 AT1G62610 29.961 257 168 7 15 261 15 269 2.96e-24 99.0
MS.gene30551.t1 AT1G62610 29.961 257 168 7 15 261 14 268 3.00e-24 99.0
MS.gene30551.t1 AT5G18210 30.165 242 148 7 14 241 7 241 1.09e-21 92.0
MS.gene30551.t1 AT2G17845 27.734 256 171 7 15 258 47 300 5.44e-21 90.5
MS.gene30551.t1 AT3G46170 27.344 256 175 7 15 261 26 279 6.48e-21 90.1
MS.gene30551.t1 AT2G47120 28.125 256 174 9 11 261 2 252 5.90e-20 86.7
MS.gene30551.t1 AT2G47120 28.175 252 171 9 15 261 7 253 9.20e-20 86.3
MS.gene30551.t1 AT3G51680 27.586 290 180 11 1 266 20 303 1.92e-18 83.6
MS.gene30551.t1 AT3G42960 29.588 267 164 10 10 260 3 261 1.20e-17 80.9
MS.gene30551.t1 AT3G26760 28.044 271 170 9 5 260 30 290 2.21e-17 80.5
MS.gene30551.t1 AT4G03140 26.172 256 175 6 15 260 78 329 3.57e-17 80.5
MS.gene30551.t1 AT1G52340 27.839 273 155 8 15 260 18 275 1.99e-15 74.7
MS.gene30551.t1 AT2G47130 27.308 260 172 9 11 261 2 253 2.47e-15 73.9
MS.gene30551.t1 AT3G29260 27.757 263 167 8 11 261 2 253 3.41e-15 73.6
MS.gene30551.t1 AT3G06060 28.500 200 132 5 9 203 31 224 2.67e-14 72.0
MS.gene30551.t1 AT3G06060 28.500 200 132 5 9 203 48 241 4.09e-14 71.6
MS.gene30551.t1 AT3G26770 27.273 264 163 8 15 260 41 293 8.71e-14 70.5
MS.gene30551.t1 AT5G19200 26.852 216 149 4 9 220 29 239 1.03e-12 67.4
MS.gene30551.t1 AT3G03330 26.531 196 135 5 14 202 40 233 2.14e-12 66.6
MS.gene30551.t1 AT1G10310 31.016 187 125 4 19 204 19 202 6.37e-12 64.3
MS.gene30551.t1 AT5G65205 26.596 188 127 5 21 205 12 191 3.14e-11 62.8
MS.gene30551.t1 AT3G29250 26.894 264 177 9 11 265 2 258 4.64e-11 62.0
MS.gene30551.t1 AT3G29250 26.923 260 174 9 15 265 42 294 7.96e-11 61.6
MS.gene30551.t1 AT3G29250 26.923 260 174 9 15 265 44 296 9.55e-11 61.6

Find 63 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCAAGATTTCTCATTTC+TGG 0.136218 4.2:-40425069 MS.gene30551:CDS
CAAGCCCAGCTTATTGTAGA+AGG 0.344955 4.2:+40422017 None:intergenic
GTAAAATCTAGTGATTGTTT+TGG 0.345117 4.2:+40425092 None:intergenic
CCTGCAGCCTCTTTCATAAC+AGG 0.358569 4.2:-40422082 MS.gene30551:CDS
GGACAGACCATTTGTATTGA+TGG 0.378202 4.2:-40422061 MS.gene30551:CDS
ACTGGTGGATCCAAAGGAAT+AGG 0.388939 4.2:-40425917 MS.gene30551:CDS
AGAACCCCTCTTGGACGTAT+TGG 0.397142 4.2:-40422148 MS.gene30551:CDS
AGATAGCAACCCTATTCCTT+TGG 0.397711 4.2:+40425907 None:intergenic
TTCATTTCAAGAACCCCTCT+TGG 0.404796 4.2:-40422157 MS.gene30551:CDS
TCAATGAATGCTTACATCAA+TGG 0.405589 4.2:-40425371 MS.gene30551:CDS
GCAGCAAGAGGGGTTCTGAT+TGG 0.447876 4.2:+40424713 None:intergenic
CAATGAATGCTTACATCAAT+GGG 0.449372 4.2:-40425370 MS.gene30551:CDS
ACCAAGGAAGACACCTCTTC+TGG 0.466532 4.2:+40422121 None:intergenic
GAGTTTGAAGCTTTGAGTAA+TGG 0.471691 4.2:+40424999 None:intergenic
TATGACTAGGTATGATATAG+TGG 0.472016 4.2:-40425451 MS.gene30551:intron
AGAGGGGTTCTGATTGGCCC+TGG 0.476277 4.2:+40424719 None:intergenic
AAATAGTAAGTGGTCTTTGA+AGG 0.483818 4.2:-40425957 MS.gene30551:CDS
ACCAGAAGAGGTGTCTTCCT+TGG 0.491068 4.2:-40422122 MS.gene30551:CDS
TGGAGCAATTAGCAGAGCTA+GGG 0.491202 4.2:-40425431 MS.gene30551:CDS
ATGACAGCTCTGGTCACTGG+TGG 0.504668 4.2:-40425932 MS.gene30551:CDS
ACCATCTATAGTGCAGCAAA+AGG 0.506661 4.2:-40424921 MS.gene30551:intron
TAACCCTCCATCAATACAAA+TGG 0.507511 4.2:+40422054 None:intergenic
TTTGAAGGGGATGACAGCTC+TGG 0.513224 4.2:-40425942 MS.gene30551:CDS
GGGATGACAGCTCTGGTCAC+TGG 0.516153 4.2:-40425935 MS.gene30551:CDS
TGAGTAATGGATGTGCAAGC+TGG 0.522910 4.2:+40425012 None:intergenic
AATAGTAAGTGGTCTTTGAA+GGG 0.525324 4.2:-40425956 MS.gene30551:CDS
GTGGAGCAATTAGCAGAGCT+AGG 0.526426 4.2:-40425432 MS.gene30551:CDS
AGGACTAATTGTGTTGCACC+AGG 0.529569 4.2:-40424737 MS.gene30551:CDS
TTACATCAATGGGTCACAAA+AGG 0.532043 4.2:-40425360 MS.gene30551:CDS
CAAGTAGCAGAAATAGTAAG+TGG 0.538795 4.2:-40425967 MS.gene30551:CDS
CTGGTCACTGGTGGATCCAA+AGG 0.539538 4.2:-40425923 MS.gene30551:CDS
AGAGTCTCTTCTGAGTTCAA+TGG 0.543714 4.2:-40425273 MS.gene30551:CDS
ACAAAAGGATACAAAATCAC+TGG 0.547408 4.2:-40425345 MS.gene30551:CDS
CAGACCATTTGTATTGATGG+AGG 0.547706 4.2:-40422058 MS.gene30551:CDS
CCTGTTATGAAAGAGGCTGC+AGG 0.552564 4.2:+40422082 None:intergenic
GGGGTAGCATCACTAAATGT+AGG 0.552808 4.2:-40424945 MS.gene30551:CDS
CTGGTGGATCCAAAGGAATA+GGG 0.554228 4.2:-40425916 MS.gene30551:intron
CCACTGTACACACTTGTGCT+AGG 0.562221 4.2:-40425407 MS.gene30551:CDS
AGACCATTTGTATTGATGGA+GGG 0.569442 4.2:-40422057 MS.gene30551:CDS
TTTCATGTCCTCCATTGGTG+GGG 0.574535 4.2:-40424964 MS.gene30551:CDS
GAAATTTAGGTGAACAATGT+GGG 0.576001 4.2:-40425125 MS.gene30551:intron
AAATTACTTCTGCAGCAAGA+GGG 0.582091 4.2:+40424702 None:intergenic
TAGTGATGCTACCCCACCAA+TGG 0.589871 4.2:+40424953 None:intergenic
AGTGGGCTAGAGACAACATA+AGG 0.591685 4.2:-40424757 MS.gene30551:CDS
GTTCTCCAATACGTCCAAGA+GGG 0.595929 4.2:+40422143 None:intergenic
AAAATTACTTCTGCAGCAAG+AGG 0.596709 4.2:+40424701 None:intergenic
AGAAGAGGTGTCTTCCTTGG+TGG 0.599777 4.2:-40422119 MS.gene30551:CDS
AAGAGGCTGCAGGTAAGCAT+AGG 0.600954 4.2:+40422092 None:intergenic
TGAAATTTAGGTGAACAATG+TGG 0.603162 4.2:-40425126 MS.gene30551:intron
GTCATCTCGTGCACAAAGAG+AGG 0.604943 4.2:-40425307 MS.gene30551:CDS
AATTACTTCTGCAGCAAGAG+GGG 0.609401 4.2:+40424703 None:intergenic
ATAGTAAGTGGTCTTTGAAG+GGG 0.610704 4.2:-40425955 MS.gene30551:CDS
GGTCTGTCCTGTTATGAAAG+AGG 0.618109 4.2:+40422075 None:intergenic
TGATGCTACCCCACCAATGG+AGG 0.621694 4.2:+40424956 None:intergenic
TATTAAGGAGAAATGGCAGA+GGG 0.641387 4.2:-40425995 None:intergenic
ACGTATTGGAGAACCAGAAG+AGG 0.658963 4.2:-40422134 MS.gene30551:CDS
GTATTAAGGAGAAATGGCAG+AGG 0.659922 4.2:-40425996 None:intergenic
GGAGCAATTAGCAGAGCTAG+GGG 0.662491 4.2:-40425430 MS.gene30551:CDS
TTCTCCAATACGTCCAAGAG+GGG 0.662521 4.2:+40422144 None:intergenic
GGACTAATTGTGTTGCACCA+GGG 0.676221 4.2:-40424736 MS.gene30551:CDS
TAAGCATAGGAATGCCACCA+AGG 0.681785 4.2:+40422105 None:intergenic
GGTTCTCCAATACGTCCAAG+AGG 0.697030 4.2:+40422142 None:intergenic
CCTAGCACAAGTGTGTACAG+TGG 0.731390 4.2:+40425407 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATCAACAAAAAAATT+AGG - chr4.2:40424987-40425006 MS.gene30551:CDS 10.0%
!! ATACATAAATAAATAAATGT+CGG + chr4.2:40422865-40422884 None:intergenic 10.0%
!! ATTAATCAACAAAAAAATTA+GGG - chr4.2:40424988-40425007 MS.gene30551:CDS 10.0%
!! TTTATTTATGTATGAAATTT+AGG - chr4.2:40422872-40422891 MS.gene30551:intron 10.0%
!! AGAAACTTAATAATTTCATA+TGG - chr4.2:40424034-40424053 MS.gene30551:intron 15.0%
!! ATCAATTAACTACAAAATTT+GGG + chr4.2:40422280-40422299 None:intergenic 15.0%
!! GGTTTCAAATTTATATATTT+GGG - chr4.2:40425104-40425123 MS.gene30551:CDS 15.0%
!! GTTTCAAATTTATATATTTG+GGG - chr4.2:40425105-40425124 MS.gene30551:CDS 15.0%
!! TCAAAAAAATTCAATCAAAA+TGG + chr4.2:40424351-40424370 None:intergenic 15.0%
!! TTTCGAAATTAAAAAATCAT+TGG + chr4.2:40424969-40424988 None:intergenic 15.0%
!!! AAAATTGTAAATTTTTTGTG+TGG + chr4.2:40424654-40424673 None:intergenic 15.0%
!!! AAATTGTAAATTTTTTGTGT+GGG + chr4.2:40424653-40424672 None:intergenic 15.0%
!!! ATGGTATTTTTATTAATTTG+AGG - chr4.2:40424292-40424311 MS.gene30551:intron 15.0%
!!! GAAACAATTTTTTTAGATAA+AGG + chr4.2:40425460-40425479 None:intergenic 15.0%
!!! TATTTTTTTCACCTTTTTAT+AGG - chr4.2:40422815-40422834 MS.gene30551:intron 15.0%
!! ACTAAACAAATCCTATAAAA+AGG + chr4.2:40422829-40422848 None:intergenic 20.0%
!! ATAGATATTTCGATAAATTC+AGG - chr4.2:40425383-40425402 MS.gene30551:CDS 20.0%
!! ATAGATATTTCGATAAATTC+AGG + chr4.2:40425402-40425383 None:intergenic 20.0%
!! ATATATGTAATTTACAATGC+AGG - chr4.2:40423195-40423214 MS.gene30551:intron 20.0%
!! ATATATGTTGTGAAAATTCA+AGG - chr4.2:40424260-40424279 MS.gene30551:intron 20.0%
!! ATGGATATGTATAAAATTCA+GGG - chr4.2:40424324-40424343 MS.gene30551:intron 20.0%
!! GATCAATTAACTACAAAATT+TGG + chr4.2:40422281-40422300 None:intergenic 20.0%
!! GGGTTTCAAATTTATATATT+TGG - chr4.2:40425103-40425122 MS.gene30551:CDS 20.0%
!! TAAAAAACGAGTTTATAAGT+AGG + chr4.2:40425708-40425727 None:intergenic 20.0%
!! TAATAAAAATACCATCAAAG+AGG + chr4.2:40424287-40424306 None:intergenic 20.0%
!! TAGATATTTCGATAAATTCA+GGG - chr4.2:40425384-40425403 MS.gene30551:CDS 20.0%
!! TAGATATTTCGATAAATTCA+GGG + chr4.2:40425403-40425384 None:intergenic 20.0%
!! TGTATTATTAATTGCTTACA+AGG + chr4.2:40422775-40422794 None:intergenic 20.0%
!! TTGTTAAAATATTGTTCCAT+TGG + chr4.2:40422463-40422482 None:intergenic 20.0%
!! TTTCTGTAAATCAATCAATT+TGG - chr4.2:40425234-40425253 MS.gene30551:intron 20.0%
!!! ACATAAGGTTTGTTTAATAA+TGG + chr4.2:40424746-40424765 None:intergenic 20.0%
!!! ATTGAATTTTTTTGACAGAA+GGG - chr4.2:40424356-40424375 MS.gene30551:intron 20.0%
!!! ATTGACATTTTGTAAATTCA+GGG - chr4.2:40425355-40425374 MS.gene30551:CDS 20.0%
!!! ATTTTGTTTTTTGAGTGTAT+AGG + chr4.2:40424686-40424705 None:intergenic 20.0%
!!! GGTTTTATGTTTTTTGAATT+GGG - chr4.2:40425009-40425028 MS.gene30551:CDS 20.0%
!!! GTTTTATGTTTTTTGAATTG+GGG - chr4.2:40425010-40425029 MS.gene30551:CDS 20.0%
!!! TACTTATAAACTCGTTTTTT+AGG - chr4.2:40425707-40425726 MS.gene30551:intron 20.0%
!!! TAGACACAATCAAATTTTTT+TGG + chr4.2:40425643-40425662 None:intergenic 20.0%
!!! TGATTATCAGTTTTAGTTTT+AGG - chr4.2:40423903-40423922 MS.gene30551:intron 20.0%
! AAAACTGATAATCACAGAAA+CGG + chr4.2:40423897-40423916 None:intergenic 25.0%
! AAACAGAGTATATAATCAAG+AGG - chr4.2:40424074-40424093 MS.gene30551:intron 25.0%
! AAACCAGCTTACAAAAAATT+TGG - chr4.2:40423224-40423243 MS.gene30551:intron 25.0%
! AGGTGACAAATAATAACATT+AGG - chr4.2:40425082-40425101 MS.gene30551:CDS 25.0%
! ATGTGAATTAAACTATGACT+AGG - chr4.2:40422546-40422565 MS.gene30551:intron 25.0%
! ATTAAACAAACCTTATGTAG+AGG - chr4.2:40424748-40424767 MS.gene30551:CDS 25.0%
! CTTTGACTAATAATAACCAA+TGG - chr4.2:40422444-40422463 MS.gene30551:intron 25.0%
! GATGGATATGTATAAAATTC+AGG - chr4.2:40424323-40424342 MS.gene30551:intron 25.0%
! GGTGACAAATAATAACATTA+GGG - chr4.2:40425083-40425102 MS.gene30551:CDS 25.0%
! TAATTTCATATGGATCGATT+TGG - chr4.2:40424044-40424063 MS.gene30551:intron 25.0%
! TCAACTAATTTCATGATCTA+TGG + chr4.2:40422218-40422237 None:intergenic 25.0%
! TGATTTACAGAAAATTTCGA+AGG + chr4.2:40425227-40425246 None:intergenic 25.0%
! TGTAATGTTGTAATGAAAAG+AGG + chr4.2:40424402-40424421 None:intergenic 25.0%
! TTAAACAAACCTTATGTAGA+GGG - chr4.2:40424749-40424768 MS.gene30551:CDS 25.0%
! TTTCTTACAACACAAATTCT+AGG - chr4.2:40424814-40424833 MS.gene30551:intron 25.0%
!! CTTTTCATTACAACATTACA+TGG - chr4.2:40424402-40424421 MS.gene30551:intron 25.0%
!! GATTGACATTTTGTAAATTC+AGG - chr4.2:40425354-40425373 MS.gene30551:CDS 25.0%
!! GTAAAATCTAGTGATTGTTT+TGG + chr4.2:40422921-40422940 None:intergenic 25.0%
!! TCAATTCATGGAAGAATTTT+GGG - chr4.2:40425045-40425064 MS.gene30551:CDS 25.0%
!! TTTCTGAAAATCCATCAATT+TGG - chr4.2:40425200-40425219 MS.gene30551:intron 25.0%
!!! AGGTTGATTAAGATTTTGAT+AGG + chr4.2:40424478-40424497 None:intergenic 25.0%
!!! CTAGGCTATTTTAAAAACAA+TGG + chr4.2:40424613-40424632 None:intergenic 25.0%
!!! GATTGAATTTTTTTGACAGA+AGG - chr4.2:40424355-40424374 MS.gene30551:intron 25.0%
!!! GGGTTTTATGTTTTTTGAAT+TGG - chr4.2:40425008-40425027 MS.gene30551:CDS 25.0%
!!! TATTTTAAAAACAATGGTGC+TGG + chr4.2:40424607-40424626 None:intergenic 25.0%
!!! TTGATGGATTTTCAGAAAAT+TGG + chr4.2:40425198-40425217 None:intergenic 25.0%
AAAAAATTTGGCATGTGAGT+GGG - chr4.2:40423236-40423255 MS.gene30551:intron 30.0%
AAATAGTAAGTGGTCTTTGA+AGG - chr4.2:40422053-40422072 MS.gene30551:CDS 30.0%
AATAGTAAGTGGTCTTTGAA+GGG - chr4.2:40422054-40422073 MS.gene30551:CDS 30.0%
AATCAAGAGGAAAATGTTGA+TGG - chr4.2:40424087-40424106 MS.gene30551:intron 30.0%
AATTCTTCCATGAATTGAGT+AGG + chr4.2:40425043-40425062 None:intergenic 30.0%
ACAAAAGGATACAAAATCAC+TGG - chr4.2:40422665-40422684 MS.gene30551:intron 30.0%
ACAGAAACGGAAACAAAAAA+GGG + chr4.2:40423884-40423903 None:intergenic 30.0%
AGAAATGATGAAGACAATGT+TGG - chr4.2:40424147-40424166 MS.gene30551:intron 30.0%
AGCAAAAGGTAACTATTTCA+TGG - chr4.2:40423103-40423122 MS.gene30551:intron 30.0%
ATAATTCAAGGACGAAATTG+AGG - chr4.2:40425427-40425446 MS.gene30551:CDS 30.0%
ATAATTCAAGGACGAAATTG+AGG + chr4.2:40425446-40425427 None:intergenic 30.0%
ATATATCACTGAGTTTCTTC+AGG + chr4.2:40424222-40424241 None:intergenic 30.0%
ATGAAAGACAATGGTAATTG+AGG + chr4.2:40423660-40423679 None:intergenic 30.0%
ATGGGTAAAATTGATTGTGT+AGG + chr4.2:40424511-40424530 None:intergenic 30.0%
ATTACAACATTACATGGACT+TGG - chr4.2:40424408-40424427 MS.gene30551:intron 30.0%
CAATGAATGCTTACATCAAT+GGG - chr4.2:40422640-40422659 MS.gene30551:intron 30.0%
GAAATTTAGGTGAACAATGT+GGG - chr4.2:40422885-40422904 MS.gene30551:intron 30.0%
GTCCTATATCGAATGAAATA+TGG + chr4.2:40425733-40425752 None:intergenic 30.0%
TAATCCAACTCCTAGAAAAT+CGG - chr4.2:40425661-40425680 MS.gene30551:intron 30.0%
TATGACTAGGTATGATATAG+TGG - chr4.2:40422559-40422578 MS.gene30551:intron 30.0%
TATTTCGATAAATTCAGGGA+CGG + chr4.2:40425407-40425388 None:intergenic 30.0%
TCAATGAATGCTTACATCAA+TGG - chr4.2:40422639-40422658 MS.gene30551:intron 30.0%
TGAAAGACAATGGTAATTGA+GGG + chr4.2:40423659-40423678 None:intergenic 30.0%
TGAAATTTAGGTGAACAATG+TGG - chr4.2:40422884-40422903 MS.gene30551:intron 30.0%
TTAACTCAAAGCTAATTTCC+TGG - chr4.2:40422342-40422361 MS.gene30551:intron 30.0%
TTTCTCCTTGAACTCATTAA+CGG + chr4.2:40425166-40425185 None:intergenic 30.0%
! AATTCATGGAAGAATTTTGG+GGG - chr4.2:40425047-40425066 MS.gene30551:CDS 30.0%
! ATTGGTGATTGTTGAAGATT+CGG + chr4.2:40424951-40424970 None:intergenic 30.0%
! CAATTCATGGAAGAATTTTG+GGG - chr4.2:40425046-40425065 MS.gene30551:CDS 30.0%
! CTCAATTCATGGAAGAATTT+TGG - chr4.2:40425044-40425063 MS.gene30551:CDS 30.0%
! GATTTTCAGAAAATTGGCAA+CGG + chr4.2:40425192-40425211 None:intergenic 30.0%
!! AATTCGAGATTTCACTTTTG+AGG - chr4.2:40423605-40423624 MS.gene30551:intron 30.0%
!! TAATTTGAGGATCGATTTGA+TGG - chr4.2:40424305-40424324 MS.gene30551:intron 30.0%
!!! ATCTTTTAAGATCTGCAAGA+AGG + chr4.2:40425815-40425834 None:intergenic 30.0%
!!! ATGCCAAATTTTTTGTAAGC+TGG + chr4.2:40423230-40423249 None:intergenic 30.0%
AAAATTACTTCTGCAGCAAG+AGG + chr4.2:40423312-40423331 None:intergenic 35.0%
AAATTACTTCTGCAGCAAGA+GGG + chr4.2:40423311-40423330 None:intergenic 35.0%
AAATTCAAGGACCTCTTTGA+TGG - chr4.2:40424273-40424292 MS.gene30551:intron 35.0%
AAGAACACCTACTCAATTCA+TGG - chr4.2:40425033-40425052 MS.gene30551:CDS 35.0%
AAGGACGAAATTGATGGAAA+TGG - chr4.2:40423578-40423597 MS.gene30551:intron 35.0%
AATGTGAGGATGAAAGACAA+TGG + chr4.2:40423669-40423688 None:intergenic 35.0%
ACATATATCACTGTGATCCT+TGG + chr4.2:40424248-40424267 None:intergenic 35.0%
ACTCAGTGATATATGTACCA+AGG - chr4.2:40424228-40424247 MS.gene30551:intron 35.0%
ATAGAGAAGCCAAATGATAG+GGG + chr4.2:40424562-40424581 None:intergenic 35.0%
ATGGTTATGTGATGTGTGAA+TGG + chr4.2:40424727-40424746 None:intergenic 35.0%
ATTTCGAAGGACCAAATTGA+TGG + chr4.2:40425214-40425233 None:intergenic 35.0%
CAAAAAATTTGGCATGTGAG+TGG - chr4.2:40423235-40423254 MS.gene30551:intron 35.0%
CAAGTAGCAGAAATAGTAAG+TGG - chr4.2:40422043-40422062 MS.gene30551:CDS 35.0%
CACAGAAACGGAAACAAAAA+AGG + chr4.2:40423885-40423904 None:intergenic 35.0%
GAAAGACAATGGTAATTGAG+GGG + chr4.2:40423658-40423677 None:intergenic 35.0%
GAATGGAAAACGAAGTTGAA+TGG + chr4.2:40423845-40423864 None:intergenic 35.0%
GAATTAGACTATTGACAACC+AGG + chr4.2:40422363-40422382 None:intergenic 35.0%
GATAGAGAAGCCAAATGATA+GGG + chr4.2:40424563-40424582 None:intergenic 35.0%
GATCGATTGCTGATAATTCA+AGG - chr4.2:40425415-40425434 MS.gene30551:CDS 35.0%
GATCGATTGCTGATAATTCA+AGG + chr4.2:40425434-40425415 None:intergenic 35.0%
GCACAAAAGAATAAGAGAAG+AGG + chr4.2:40422140-40422159 None:intergenic 35.0%
GGCCATATTTCATTCGATAT+AGG - chr4.2:40425728-40425747 MS.gene30551:intron 35.0%
TAAAGCTTGAAGATGAAGAC+TGG - chr4.2:40424875-40424894 MS.gene30551:intron 35.0%
TAACAGACCAACTTAACGTA+GGG - chr4.2:40425323-40425342 MS.gene30551:CDS 35.0%
TAACCCTCCATCAATACAAA+TGG + chr4.2:40425959-40425978 None:intergenic 35.0%
TCCAAAATCATCATCATCAC+CGG - chr4.2:40423759-40423778 MS.gene30551:intron 35.0%
TCTCTTCCAGTCCAAATTAA+CGG + chr4.2:40425140-40425159 None:intergenic 35.0%
TGAGCAAGATTTCTCATTTC+TGG - chr4.2:40422941-40422960 MS.gene30551:intron 35.0%
TGATAGAGAAGCCAAATGAT+AGG + chr4.2:40424564-40424583 None:intergenic 35.0%
TTAACAGACCAACTTAACGT+AGG - chr4.2:40425322-40425341 MS.gene30551:CDS 35.0%
TTACATCAATGGGTCACAAA+AGG - chr4.2:40422650-40422669 MS.gene30551:intron 35.0%
! AAAACTAGTTTGTCCGATGT+GGG - chr4.2:40425589-40425608 MS.gene30551:intron 35.0%
! AGACCATTTGTATTGATGGA+GGG - chr4.2:40425953-40425972 MS.gene30551:CDS 35.0%
! ATAGTAAGTGGTCTTTGAAG+GGG - chr4.2:40422055-40422074 MS.gene30551:CDS 35.0%
! ATTGTTTTCATGTCCTCCAT+TGG - chr4.2:40423041-40423060 MS.gene30551:intron 35.0%
! TAAAACTAGTTTGTCCGATG+TGG - chr4.2:40425588-40425607 MS.gene30551:intron 35.0%
! TGGTAATTGAGGGGTATAAT+TGG + chr4.2:40423649-40423668 None:intergenic 35.0%
!! ACAGTATTAGCCGATTTTCT+AGG + chr4.2:40425674-40425693 None:intergenic 35.0%
!! ACGTTAAGTTGGTCTGTTAA+CGG + chr4.2:40425322-40425341 None:intergenic 35.0%
!! AGTTTCTGGTTGAGTTTGTT+GGG + chr4.2:40424184-40424203 None:intergenic 35.0%
!! ATGATTTTGGAGAAGTGAAG+AGG + chr4.2:40423750-40423769 None:intergenic 35.0%
!! GAAAATGTTGATGGTACTCA+AGG - chr4.2:40424096-40424115 MS.gene30551:intron 35.0%
!! GAGTTTGAAGCTTTGAGTAA+TGG + chr4.2:40423014-40423033 None:intergenic 35.0%
!! TGATTTTGGAGAAGTGAAGA+GGG + chr4.2:40423749-40423768 None:intergenic 35.0%
AATCAGTCCCTACGTTAAGT+TGG + chr4.2:40425333-40425352 None:intergenic 40.0%
AATTACTTCTGCAGCAAGAG+GGG + chr4.2:40423310-40423329 None:intergenic 40.0%
ACCATCTATAGTGCAGCAAA+AGG - chr4.2:40423089-40423108 MS.gene30551:intron 40.0%
AGAGTCTCTTCTGAGTTCAA+TGG - chr4.2:40422737-40422756 MS.gene30551:intron 40.0%
AGATAGCAACCCTATTCCTT+TGG + chr4.2:40422106-40422125 None:intergenic 40.0%
ATGGACGTCTGCAAAATTCA+GGG + chr4.2:40423457-40423476 None:intergenic 40.0%
ATGTGAGAGAGCTTCATTGT+TGG + chr4.2:40424843-40424862 None:intergenic 40.0%
ATTGTGTAGGAAGTGAGCTT+AGG + chr4.2:40424498-40424517 None:intergenic 40.0%
CAATAGTCACGATGCTTGTT+TGG - chr4.2:40422390-40422409 MS.gene30551:intron 40.0%
GAGAAACGAACAACAGTGAA+TGG + chr4.2:40423862-40423881 None:intergenic 40.0%
GATCAACCGTGGAAAAGATA+CGG - chr4.2:40423783-40423802 MS.gene30551:intron 40.0%
GGAAGAAAGAGCCGTTAATT+TGG - chr4.2:40425126-40425145 MS.gene30551:intron 40.0%
GGACAGACCATTTGTATTGA+TGG - chr4.2:40425949-40425968 MS.gene30551:CDS 40.0%
GTGTACAAGGACGAAATTGA+TGG - chr4.2:40423572-40423591 MS.gene30551:intron 40.0%
TACTCAAGGAATGGAGGAAA+TGG - chr4.2:40424110-40424129 MS.gene30551:intron 40.0%
TTCATTTCAAGAACCCCTCT+TGG - chr4.2:40425853-40425872 MS.gene30551:intron 40.0%
TTGGTATGCGACTAATGAGT+TGG + chr4.2:40425624-40425643 None:intergenic 40.0%
! AAAGAGCCGTTAATTTGGAC+TGG - chr4.2:40425131-40425150 MS.gene30551:intron 40.0%
! AAGCATCGTGACTATTGACT+AGG + chr4.2:40422387-40422406 None:intergenic 40.0%
! ACCTTTTGCTGCACTATAGA+TGG + chr4.2:40423093-40423112 None:intergenic 40.0%
! AGGGGTATAATTGGAAACAC+AGG + chr4.2:40423640-40423659 None:intergenic 40.0%
! CAGACCATTTGTATTGATGG+AGG - chr4.2:40425952-40425971 MS.gene30551:CDS 40.0%
! GTTGATGAAGCTGAAGAACT+AGG + chr4.2:40424631-40424650 None:intergenic 40.0%
! TCAAAGCCGTATCTTTTCCA+CGG + chr4.2:40423792-40423811 None:intergenic 40.0%
! TCAGATTTCGTGGTTTGTCA+AGG - chr4.2:40423814-40423833 MS.gene30551:intron 40.0%
! TTTGGGGGATTTTGAACTCT+AGG - chr4.2:40425062-40425081 MS.gene30551:CDS 40.0%
! TTTTCATGTCCTCCATTGGT+GGG - chr4.2:40423045-40423064 MS.gene30551:intron 40.0%
!! AAAAACAATGGTGCTGGTCA+TGG + chr4.2:40424601-40424620 None:intergenic 40.0%
!! ATTCGGTGTTCAGGAATGAT+GGG + chr4.2:40424934-40424953 None:intergenic 40.0%
!! GAGTTTCTGGTTGAGTTTGT+TGG + chr4.2:40424185-40424204 None:intergenic 40.0%
!! GTTTCTTCAGGTTGAGTTTC+AGG + chr4.2:40424210-40424229 None:intergenic 40.0%
!! TGAGTTTCAGGTTGAGTTTC+TGG + chr4.2:40424198-40424217 None:intergenic 40.0%
!! TGGTTCTGAGTGAAAATGTG+AGG + chr4.2:40423683-40423702 None:intergenic 40.0%
!! TGTTGATGGTACTCAAGGAA+TGG - chr4.2:40424101-40424120 MS.gene30551:intron 40.0%
!! TTAAGTTGGTCTGTTAACGG+AGG + chr4.2:40425319-40425338 None:intergenic 40.0%
!! TTAGCCGATTTTCTAGGAGT+TGG + chr4.2:40425668-40425687 None:intergenic 40.0%
!! TTGTTGAAGATTCGGTGTTC+AGG + chr4.2:40424943-40424962 None:intergenic 40.0%
AAATGATAGGGGCAGAGAAG+AGG + chr4.2:40424551-40424570 None:intergenic 45.0%
AAGGAATGGAGGAAATGGCT+TGG - chr4.2:40424115-40424134 MS.gene30551:intron 45.0%
ACAGGACAACACAACATGCA+AGG + chr4.2:40423529-40423548 None:intergenic 45.0%
ACGTATTGGAGAACCAGAAG+AGG - chr4.2:40425876-40425895 MS.gene30551:intron 45.0%
AGACATAGAAAGGCCTTCCT+GGG - chr4.2:40424773-40424792 MS.gene30551:CDS 45.0%
AGGAATGGAGGAAATGGCTT+GGG - chr4.2:40424116-40424135 MS.gene30551:intron 45.0%
AGGACAACACAACATGCAAG+GGG + chr4.2:40423527-40423546 None:intergenic 45.0%
AGGACTAATTGTGTTGCACC+AGG - chr4.2:40423273-40423292 MS.gene30551:intron 45.0%
CAATTTCGTCCTTGTACACG+TGG + chr4.2:40423571-40423590 None:intergenic 45.0%
CAGGACAACACAACATGCAA+GGG + chr4.2:40423528-40423547 None:intergenic 45.0%
CTATGTCTGCCCTCTACATA+AGG + chr4.2:40424761-40424780 None:intergenic 45.0%
CTGGTCATGGAAGAAATGCA+AGG + chr4.2:40424588-40424607 None:intergenic 45.0%
GAGAGCCGTTAATGAGTTCA+AGG - chr4.2:40425158-40425177 MS.gene30551:intron 45.0%
GATGGACGTCTGCAAAATTC+AGG + chr4.2:40423458-40423477 None:intergenic 45.0%
GGACATGTCATCACCACTAA+CGG + chr4.2:40423506-40423525 None:intergenic 45.0%
GGACTAATTGTGTTGCACCA+GGG - chr4.2:40423274-40423293 MS.gene30551:intron 45.0%
GGGGTAGCATCACTAAATGT+AGG - chr4.2:40423065-40423084 MS.gene30551:intron 45.0%
GGTCTGTCCTGTTATGAAAG+AGG + chr4.2:40425938-40425957 None:intergenic 45.0%
GTTCTCCAATACGTCCAAGA+GGG + chr4.2:40425870-40425889 None:intergenic 45.0%
TAAGCATAGGAATGCCACCA+AGG + chr4.2:40425908-40425927 None:intergenic 45.0%
TCTTCTCTGCCCCTATCATT+TGG - chr4.2:40424550-40424569 MS.gene30551:intron 45.0%
TGATGGTACTCAAGGAATGG+AGG - chr4.2:40424104-40424123 MS.gene30551:intron 45.0%
TGGAGCAATTAGCAGAGCTA+GGG - chr4.2:40422579-40422598 MS.gene30551:intron 45.0%
TGTAGAGGGCAGACATAGAA+AGG - chr4.2:40424763-40424782 MS.gene30551:CDS 45.0%
TTCTCCAATACGTCCAAGAG+GGG + chr4.2:40425869-40425888 None:intergenic 45.0%
TTTCATGTCCTCCATTGGTG+GGG - chr4.2:40423046-40423065 MS.gene30551:intron 45.0%
! ACTGGTGGATCCAAAGGAAT+AGG - chr4.2:40422093-40422112 MS.gene30551:CDS 45.0%
! ATCACCACTAACGGTGCTTT+TGG + chr4.2:40423497-40423516 None:intergenic 45.0%
! CTGGTGGATCCAAAGGAATA+GGG - chr4.2:40422094-40422113 MS.gene30551:CDS 45.0%
! GTTTGGACGACAAGGTTGAT+GGG + chr4.2:40424529-40424548 None:intergenic 45.0%
! GTTTTCATGTCCTCCATTGG+TGG - chr4.2:40423044-40423063 MS.gene30551:intron 45.0%
!! AAGGTAAGGGACTGGTTTGA+TGG + chr4.2:40423703-40423722 None:intergenic 45.0%
!! AGTGGGCTAGAGACAACATA+AGG - chr4.2:40423253-40423272 MS.gene30551:intron 45.0%
!! GATTCGGTGTTCAGGAATGA+TGG + chr4.2:40424935-40424954 None:intergenic 45.0%
!! GCCGGTGATGATGATGATTT+TGG + chr4.2:40423763-40423782 None:intergenic 45.0%
!! GGCTTTGAAGTCAGATTTCG+TGG - chr4.2:40423804-40423823 MS.gene30551:intron 45.0%
!! TGAGTAATGGATGTGCAAGC+TGG + chr4.2:40423001-40423020 None:intergenic 45.0%
!!! TTTTTTTATTAGTAATTTTA+GGG - chr4.2:40424002-40424021 MS.gene30551:intron 5.0%
!!! TTTTTTTTATTAGTAATTTT+AGG - chr4.2:40424001-40424020 MS.gene30551:intron 5.0%
AAGAGGCTGCAGGTAAGCAT+AGG + chr4.2:40425921-40425940 None:intergenic 50.0%
ACACTGTCCAAAACCCAGGA+AGG + chr4.2:40424789-40424808 None:intergenic 50.0%
ACCAAGGAAGACACCTCTTC+TGG + chr4.2:40425892-40425911 None:intergenic 50.0%
AGAACCCCTCTTGGACGTAT+TGG - chr4.2:40425862-40425881 MS.gene30551:intron 50.0%
AGGCTGGAAGGTGAAAGGTA+AGG + chr4.2:40423717-40423736 None:intergenic 50.0%
ATAGGGGCAGAGAAGAGGTT+TGG + chr4.2:40424546-40424565 None:intergenic 50.0%
CAGACATAGAAAGGCCTTCC+TGG - chr4.2:40424772-40424791 MS.gene30551:CDS 50.0%
CCACTGTACACACTTGTGCT+AGG - chr4.2:40422603-40422622 MS.gene30551:intron 50.0%
CCTAGCACAAGTGTGTACAG+TGG + chr4.2:40422606-40422625 None:intergenic 50.0%
CCTGCAGCCTCTTTCATAAC+AGG - chr4.2:40425928-40425947 MS.gene30551:CDS 50.0%
CCTGTTATGAAAGAGGCTGC+AGG + chr4.2:40425931-40425950 None:intergenic 50.0%
GAAGGTGAAAGGTAAGGGAC+TGG + chr4.2:40423711-40423730 None:intergenic 50.0%
GAGAAGAGGTTTGGACGACA+AGG + chr4.2:40424537-40424556 None:intergenic 50.0%
GCAAACACTGTCCAAAACCC+AGG + chr4.2:40424793-40424812 None:intergenic 50.0%
GGAGCAATTAGCAGAGCTAG+GGG - chr4.2:40422580-40422599 MS.gene30551:intron 50.0%
GGCTGGAAGGTGAAAGGTAA+GGG + chr4.2:40423716-40423735 None:intergenic 50.0%
GGTTCTCCAATACGTCCAAG+AGG + chr4.2:40425871-40425890 None:intergenic 50.0%
GGTTTAGGCTGGAAGGTGAA+AGG + chr4.2:40423722-40423741 None:intergenic 50.0%
GGTTTGGACGACAAGGTTGA+TGG + chr4.2:40424530-40424549 None:intergenic 50.0%
GTCATCTCGTGCACAAAGAG+AGG - chr4.2:40422703-40422722 MS.gene30551:intron 50.0%
GTCCTGTACACGTGTCAACA+AGG - chr4.2:40423542-40423561 MS.gene30551:intron 50.0%
GTGGAGCAATTAGCAGAGCT+AGG - chr4.2:40422578-40422597 MS.gene30551:intron 50.0%
TAGTGATGCTACCCCACCAA+TGG + chr4.2:40423060-40423079 None:intergenic 50.0%
TGGAGAAGTGAAGAGGGTGA+CGG + chr4.2:40423743-40423762 None:intergenic 50.0%
TTTGAAGGGGATGACAGCTC+TGG - chr4.2:40422068-40422087 MS.gene30551:CDS 50.0%
! ACTAGTTTGTCCGATGTGGG+AGG - chr4.2:40425592-40425611 MS.gene30551:intron 50.0%
! AGAAAGGCCTTCCTGGGTTT+TGG - chr4.2:40424779-40424798 MS.gene30551:CDS 50.0%
! AGTGAAGAGGGTGACGGTTT+AGG + chr4.2:40423737-40423756 None:intergenic 50.0%
! CCACTAACGGTGCTTTTGGA+CGG + chr4.2:40423493-40423512 None:intergenic 50.0%
! TAACGGTGCTTTTGGACGGA+GGG + chr4.2:40423489-40423508 None:intergenic 50.0%
! TCTTTTCCACGGTTGATCGC+CGG + chr4.2:40423781-40423800 None:intergenic 50.0%
! TGCCTTGTTGACACGTGTAC+AGG + chr4.2:40423547-40423566 None:intergenic 50.0%
!! ACCAGAAGAGGTGTCTTCCT+TGG - chr4.2:40425888-40425907 MS.gene30551:intron 50.0%
!! AGAAGAGGTGTCTTCCTTGG+TGG - chr4.2:40425891-40425910 MS.gene30551:intron 50.0%
!! GTTCAGGAATGATGGGTGGT+GGG + chr4.2:40424927-40424946 None:intergenic 50.0%
!! TGTTCAGGAATGATGGGTGG+TGG + chr4.2:40424928-40424947 None:intergenic 50.0%
!! TTGGACTAGTCCTCCCACAT+CGG + chr4.2:40425605-40425624 None:intergenic 50.0%
ACAAGGCAGCCACGTGTACA+AGG - chr4.2:40423559-40423578 MS.gene30551:intron 55.0%
ACGTCATATGCCACGCAAGC+AGG + chr4.2:40425262-40425281 None:intergenic 55.0%
CAATTTGGTCCCTGCTTGCG+TGG - chr4.2:40425249-40425268 MS.gene30551:intron 55.0%
CGTCATATGCCACGCAAGCA+GGG + chr4.2:40425261-40425280 None:intergenic 55.0%
GACGTGGCAAGCTCTGTAAG+AGG - chr4.2:40425277-40425296 MS.gene30551:CDS 55.0%
TGATGCTACCCCACCAATGG+AGG + chr4.2:40423057-40423076 None:intergenic 55.0%
TGCTTGCGTGGCATATGACG+TGG - chr4.2:40425261-40425280 MS.gene30551:CDS 55.0%
! AAGAGGGTGACGGTTTAGGC+TGG + chr4.2:40423733-40423752 None:intergenic 55.0%
! ATGACAGCTCTGGTCACTGG+TGG - chr4.2:40422078-40422097 MS.gene30551:CDS 55.0%
! CGGTGTTCAGGAATGATGGG+TGG + chr4.2:40424931-40424950 None:intergenic 55.0%
! CTAACGGTGCTTTTGGACGG+AGG + chr4.2:40423490-40423509 None:intergenic 55.0%
! CTGGTCACTGGTGGATCCAA+AGG - chr4.2:40422087-40422106 MS.gene30551:CDS 55.0%
! GCAGCAAGAGGGGTTCTGAT+TGG + chr4.2:40423300-40423319 None:intergenic 55.0%
!! AATGATGGGTGGTGGGCGTA+TGG + chr4.2:40424920-40424939 None:intergenic 55.0%
!! ATGATGGGTGGTGGGCGTAT+GGG + chr4.2:40424919-40424938 None:intergenic 55.0%
!! CCGTCCAAAAGCACCGTTAG+TGG - chr4.2:40423490-40423509 MS.gene30551:intron 55.0%
!! GGACGGAGGGACTGATTTGA+TGG + chr4.2:40423476-40423495 None:intergenic 55.0%
TCATCACCGGCGATCAACCG+TGG - chr4.2:40423772-40423791 MS.gene30551:intron 60.0%
! AGAGGGGTTCTGATTGGCCC+TGG + chr4.2:40423294-40423313 None:intergenic 60.0%
! GGGATGACAGCTCTGGTCAC+TGG - chr4.2:40422075-40422094 MS.gene30551:CDS 60.0%
! GGGTGACGGTTTAGGCTGGA+AGG + chr4.2:40423729-40423748 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 40422027 40426005 40422027 ID=MS.gene30551
chr4.2 mRNA 40422027 40426005 40422027 ID=MS.gene30551.t1;Parent=MS.gene30551
chr4.2 exon 40425917 40426005 40425917 ID=MS.gene30551.t1.exon1;Parent=MS.gene30551.t1
chr4.2 CDS 40425917 40426005 40425917 ID=cds.MS.gene30551.t1;Parent=MS.gene30551.t1
chr4.2 exon 40425257 40425464 40425257 ID=MS.gene30551.t1.exon2;Parent=MS.gene30551.t1
chr4.2 CDS 40425257 40425464 40425257 ID=cds.MS.gene30551.t1;Parent=MS.gene30551.t1
chr4.2 exon 40424922 40425138 40424922 ID=MS.gene30551.t1.exon3;Parent=MS.gene30551.t1
chr4.2 CDS 40424922 40425138 40424922 ID=cds.MS.gene30551.t1;Parent=MS.gene30551.t1
chr4.2 exon 40424709 40424815 40424709 ID=MS.gene30551.t1.exon4;Parent=MS.gene30551.t1
chr4.2 CDS 40424709 40424815 40424709 ID=cds.MS.gene30551.t1;Parent=MS.gene30551.t1
chr4.2 exon 40422027 40422209 40422027 ID=MS.gene30551.t1.exon5;Parent=MS.gene30551.t1
chr4.2 CDS 40422027 40422209 40422027 ID=cds.MS.gene30551.t1;Parent=MS.gene30551.t1
Gene Sequence

>MS.gene30551

ATGGCAGAGGGAAACACAAGTAGCAGAAATAGTAAGTGGTCTTTGAAGGGGATGACAGCTCTGGTCACTGGTGGATCCAAAGGAATAGGGTTGCTATCTTTTGTTCTTTTCCTCTTCTCTTATTCTTTTGTGCAGATTATTTTGCTTATTTCTCTTGTTGCAAATTAATTGATCTTTTAGCAGCTCTACCATAGATCATGAAATTAGTTGAGTTAGTCACAAATATACTATTTTAATTTTTAGCTAGCTACCCAAATTTTGTAGTTAATTGATCATAACTAATGTTTTTTGTTTAAAACTATAACTAATTCTAAATTAACTCAAAGCTAATTTCCTGGTTGTCAATAGTCTAATTCACCTAGTCAATAGTCACGATGCTTGTTTGGAAAAATTTGTAAAGCAAGTCAAACATGTTTACTTTGACTAATAATAACCAATGGAACAATATTTTAACAAATTAAATATGATAGTCTTATATAAAAAATATTTATGAATCATGATTTTTCTCACTGTTTATATATGTGAATTAAACTATGACTAGGTATGATATAGTGGAGCAATTAGCAGAGCTAGGGGCCACTGTACACACTTGTGCTAGGAATGAAGCTCAACTCAATGAATGCTTACATCAATGGGTCACAAAAGGATACAAAATCACTGGTTCAGTCTGTGATGTGTCATCTCGTGCACAAAGAGAGGAGCTCATAGCTAGAGTCTCTTCTGAGTTCAATGGCAAACTCAATATCCTTGTAAGCAATTAATAATACAATACATGAAATTGAAGTTACTATTTTTTTCACCTTTTTATAGGATTTGTTTAGTTTGTTACATTAGACCGACATTTATTTATTTATGTATGAAATTTAGGTGAACAATGTGGGAACAAACATACCAAAACAATCACTAGATTTTACTGAGCAAGATTTCTCATTTCTGGTGAATACAAATCTTGAATCTGCTTTTCACATAAGCCAGCTTGCACATCCATTACTCAAAGCTTCAAACTCTGCAAGCATTGTTTTCATGTCCTCCATTGGTGGGGTAGCATCACTAAATGTAGGAACCATCTATAGTGCAGCAAAAGGTAACTATTTCATGGTTTTAATTTAGTAAAATTGACACTGTAATTTTATTTTTTTTTTGAACTAAAAATGTTTAATTTTAAAATATATATGTAATTTACAATGCAGGAGCAATAAACCAGCTTACAAAAAATTTGGCATGTGAGTGGGCTAGAGACAACATAAGGACTAATTGTGTTGCACCAGGGCCAATCAGAACCCCTCTTGCTGCAGAAGTAATTTTCTATACTTGTTGTTTGTGTATAATGATTTTACACTTTATCTAGACTAATACCTCAATTTCGTCCTTGAATTATCAGCAATCGATCAAATCCGTCCCTGAATTTATCGAAATATCTATTTAGTCCCTGAATTTTGCAGACGTCCATCAAATCAGTCCCTCCGTCCAAAAGCACCGTTAGTGGTGATGACATGTCCCCTTGCATGTTGTGTTGTCCTGTACACGTGTCAACAAGGCAGCCACGTGTACAAGGACGAAATTGATGGAAATGGAGAAAATTCGAGATTTCACTTTTGAGGATAATTTTTCCTGTGTTTCCAATTATACCCCTCAATTACCATTGTCTTTCATCCTCACATTTTCACTCAGAACCATCAAACCAGTCCCTTACCTTTCACCTTCCAGCCTAAACCGTCACCCTCTTCACTTCTCCAAAATCATCATCATCACCGGCGATCAACCGTGGAAAAGATACGGCTTTGAAGTCAGATTTCGTGGTTTGTCAAGGTAACGCCATTCAACTTCGTTTTCCATTCACTGTTGTTCGTTTCTCCCTTTTTTGTTTCCGTTTCTGTGATTATCAGTTTTAGTTTTAGGCATTATTTTTTCAACTTTTAACATCATATCATGTTTCGTTGATGTTTGTTTGTGCGTGTTGTGTGTTTGATTGCGTTTTTTTTATTAGTAATTTTAGGGTTTTTTGTTAGAAACTTAATAATTTCATATGGATCGATTTGGTTACTAAAAACAGAGTATATAATCAAGAGGAAAATGTTGATGGTACTCAAGGAATGGAGGAAATGGCTTGGGATACTCAAAGAAATGATGAAGACAATGTTGGTGCAACTGTCACCCAACAAACTCAACCAGAAACTCAACCTGAAACTCAACCTGAAGAAACTCAGTGATATATGTACCAAGGATCACAGTGATATATGTTGTGAAAATTCAAGGACCTCTTTGATGGTATTTTTATTAATTTGAGGATCGATTTGATGGATATGTATAAAATTCAGGGACCATTTTGATTGAATTTTTTTGACAGAAGGGTTTGATTCATTCATTTATAACCTCTTTTCATTACAACATTACATGGACTTGGCACAATACAATAGCATTCTAAACAACTCAATCAAACATAATACTCCTATCAAAATCTTAATCAACCTAAGCTCACTTCCTACACAATCAATTTTACCCATCAACCTTGTCGTCCAAACCTCTTCTCTGCCCCTATCATTTGGCTTCTCTATCAACCTTGCATTTCTTCCATGACCAGCACCATTGTTTTTAAAATAGCCTAGTTCTTCAGCTTCATCAACCCACACAAAAAATTTACAATTTTCATCATCTTCCTATACACTCAAAAAACAAAATAAGTACTATTTAAACAAACCATTCACACATCACATAACCATTATTAAACAAACCTTATGTAGAGGGCAGACATAGAAAGGCCTTCCTGGGTTTTGGACAGTGTTTGCTTTTCTTACAACACAAATTCTAGGACACCAACAATGAAGCTCTCTCACATCATCATTGTACATAAAGCTTGAAGATGAAGACTGGCTGTTGTAGTTGTTTTTGCCCATACGCCCACCACCCATCATTCCTGAACACCGAATCTTCAACAATCACCAATGATTTTTTAATTTCGAAATTAATCAACAAAAAAATTAGGGTTTTATGTTTTTTGAATTGGGGAAGAACACCTACTCAATTCATGGAAGAATTTTGGGGGATTTTGAACTCTAGGTGACAAATAATAACATTAGGGTTTCAAATTTATATATTTGGGGAAGAAAGAGCCGTTAATTTGGACTGGAAGAGAGAGCCGTTAATGAGTTCAAGGAGAAAGAGCCGTTGCCAATTTTCTGAAAATCCATCAATTTGGTCCTTCGAAATTTTCTGTAAATCAATCAATTTGGTCCCTGCTTGCGTGGCATATGACGTGGCAAGCTCTGTAAGAGGTTAACGTTACACGTCACCTCCGTTAACAGACCAACTTAACGTAGGGACTGATTTGATTGACATTTTGTAAATTCAGGGACTAAATAGATATTTCGATAAATTCAGGGACGAATTTGATCGATTGCTGATAATTCAAGGACGAAATTGAGGTATTAGTCCTTTATCTAAAAAAATTGTTTCACTCACAATTATCTAGTTACATCTCACGATGTACATATTTGTTGAGAAAATAATATCAAATGATGATATATAATTCTTAAAATTTGAGTTGCGCTTAACTCAACTCTATAAAACTAGTTTGTCCGATGTGGGAGGACTAGTCCAACTCATTAGTCGCATACCAAAAAAATTTGATTGTGTCTAATCCAACTCCTAGAAAATCGGCTAATACTGTGTTACTTGTCTCCTACTTATAAACTCGTTTTTTAGGCCATATTTCATTCGATATAGGACTTTTAATAATAATTGAATAAATATGTAAAAAAGAGTTACATGTTAATGCATAGTTATTTCCTTCTTGCAGATCTTAAAAGATGAAAAACTTCTCGATGCTTTCATTTCAAGAACCCCTCTTGGACGTATTGGAGAACCAGAAGAGGTGTCTTCCTTGGTGGCATTCCTATGCTTACCTGCAGCCTCTTTCATAACAGGACAGACCATTTGTATTGATGGAGGGTTAACTGTCAACTGTCTCCTTCTACAATAA

Protein sequence

>MS.gene30551.t1

MAEGNTSSRNSKWSLKGMTALVTGGSKGIGYDIVEQLAELGATVHTCARNEAQLNECLHQWVTKGYKITGSVCDVSSRAQREELIARVSSEFNGKLNILVNNVGTNIPKQSLDFTEQDFSFLVNTNLESAFHISQLAHPLLKASNSASIVFMSSIGGVASLNVGTIYSAAKGAINQLTKNLACEWARDNIRTNCVAPGPIRTPLAAEILKDEKLLDAFISRTPLGRIGEPEEVSSLVAFLCLPAASFITGQTICIDGGLTVNCLLLQ