AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019786

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019786.t1 MTR_6g035395 88.506 261 17 1 2 262 1 248 3.39e-163 452
MS.gene019786.t1 MTR_7g110140 78.210 257 56 0 1 257 1 257 6.67e-146 409
MS.gene019786.t1 MTR_7g110130 69.767 258 77 1 1 257 1 258 9.33e-127 360
MS.gene019786.t1 MTR_2g090165 67.704 257 83 0 1 257 1 257 4.07e-125 356
MS.gene019786.t1 MTR_7g110160 62.646 257 78 1 1 257 1 239 2.46e-108 313
MS.gene019786.t1 MTR_6g023590 52.191 251 118 2 5 253 12 262 1.94e-86 258
MS.gene019786.t1 MTR_6g023950 51.779 253 120 2 5 255 12 264 2.31e-82 248
MS.gene019786.t1 MTR_4g052350 52.941 255 115 3 4 257 12 262 2.26e-81 246
MS.gene019786.t1 MTR_4g052340 51.373 255 119 3 4 257 12 262 9.95e-81 244
MS.gene019786.t1 MTR_6g023610 51.200 250 120 2 5 252 12 261 1.61e-80 243
MS.gene019786.t1 MTR_6g023990 50.199 251 123 2 5 253 13 263 5.29e-80 242
MS.gene019786.t1 MTR_6g023910 51.200 250 120 2 5 252 12 261 1.39e-79 241
MS.gene019786.t1 MTR_6g023600 50.996 251 121 2 5 253 12 262 1.39e-79 241
MS.gene019786.t1 MTR_4g052320 51.575 254 119 3 5 257 7 257 6.29e-78 237
MS.gene019786.t1 MTR_7g071680 48.540 274 119 4 4 257 27 298 2.52e-77 236
MS.gene019786.t1 MTR_4g052300 51.181 254 119 3 5 257 7 256 1.90e-76 233
MS.gene019786.t1 MTR_6g023600 50.199 251 117 3 5 253 12 256 1.05e-74 228
MS.gene019786.t1 MTR_7g105460 47.431 253 131 2 5 256 12 263 2.71e-73 225
MS.gene019786.t1 MTR_7g083870 47.893 261 127 5 4 257 33 291 7.47e-69 215
MS.gene019786.t1 MTR_7g107670 45.247 263 134 6 4 259 31 290 4.17e-68 213
MS.gene019786.t1 MTR_7g105580 45.059 253 121 3 4 256 6 240 3.36e-63 199
MS.gene019786.t1 MTR_4g078630 42.593 270 144 5 1 262 14 280 1.31e-62 198
MS.gene019786.t1 MTR_3g020670 47.170 265 130 5 4 259 14 277 1.48e-60 193
MS.gene019786.t1 MTR_7g105590 48.108 185 94 2 4 187 6 189 3.33e-53 171
MS.gene019786.t1 MTR_3g113870 42.857 182 101 3 14 194 29 208 5.57e-44 149
MS.gene019786.t1 MTR_7g105570 36.905 252 106 3 6 256 21 220 5.34e-42 144
MS.gene019786.t1 MTR_4g084800 50.382 131 64 1 2 131 9 139 6.58e-39 133
MS.gene019786.t1 MTR_4g058840 28.195 266 162 7 6 254 11 264 4.93e-22 92.4
MS.gene019786.t1 MTR_4g058820 28.195 266 162 7 6 254 11 264 4.93e-22 92.4
MS.gene019786.t1 MTR_1g051165 26.236 263 180 6 4 254 12 272 7.73e-22 92.0
MS.gene019786.t1 MTR_3g085740 29.297 256 164 8 4 252 73 318 2.09e-21 91.7
MS.gene019786.t1 MTR_8g442750 30.534 262 157 10 6 252 14 265 1.07e-17 81.3
MS.gene019786.t1 MTR_4g058810 27.170 265 166 8 6 254 11 264 1.08e-17 80.9
MS.gene019786.t1 MTR_4g132850 29.134 254 169 7 2 252 3 248 2.22e-17 79.3
MS.gene019786.t1 MTR_1196s0010 32.283 254 149 9 7 252 275 513 1.28e-16 79.3
MS.gene019786.t1 MTR_7g113650 27.626 257 169 6 5 251 39 288 6.69e-16 75.9
MS.gene019786.t1 MTR_4g097510 30.220 182 123 4 7 187 3 181 1.16e-15 75.1
MS.gene019786.t1 MTR_7g105560 58.621 58 24 0 2 59 9 66 1.78e-15 72.0
MS.gene019786.t1 MTR_4g064887 25.969 258 177 7 3 254 12 261 4.65e-15 73.2
MS.gene019786.t1 MTR_1g082760 26.316 266 161 7 5 251 39 288 8.13e-15 73.2
MS.gene019786.t1 MTR_4g131740 25.954 262 168 8 5 251 39 289 1.41e-14 72.4
MS.gene019786.t1 MTR_8g096580 31.122 196 128 4 4 195 43 235 2.23e-14 72.0
MS.gene019786.t1 MTR_3g068085 29.644 253 168 10 6 254 15 261 4.18e-14 70.9
MS.gene019786.t1 MTR_3g087850 29.570 186 123 5 4 187 24 203 2.03e-13 68.9
MS.gene019786.t1 MTR_3g068070 28.030 264 164 10 3 254 12 261 5.21e-13 67.4
MS.gene019786.t1 MTR_4g086400 24.904 261 155 8 8 248 6 245 7.12e-13 68.6
MS.gene019786.t1 MTR_7g063360 28.846 260 171 9 3 254 13 266 8.47e-13 67.0
MS.gene019786.t1 MTR_7g094520 28.346 254 170 7 6 252 11 259 1.42e-12 66.2
MS.gene019786.t1 MTR_7g063390 28.462 260 172 8 3 254 13 266 1.77e-12 65.9
MS.gene019786.t1 MTR_3g087860 33.835 133 84 3 56 187 59 188 5.96e-12 64.7
MS.gene019786.t1 MTR_7g063320 28.794 257 171 9 3 252 12 263 1.68e-11 63.2
MS.gene019786.t1 MTR_4g066050 28.333 180 109 5 9 175 27 199 8.17e-11 61.2
MS.gene019786.t1 MTR_8g096620 26.087 207 147 3 1 204 40 243 9.62e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019786.t1 AT2G47140 62.353 255 96 0 1 255 1 255 9.00e-115 330
MS.gene019786.t1 AT3G29250 61.569 255 98 0 1 255 1 255 1.34e-107 312
MS.gene019786.t1 AT3G29250 61.417 254 98 0 2 255 40 293 2.94e-107 312
MS.gene019786.t1 AT3G29250 61.569 255 98 0 1 255 37 291 4.44e-107 312
MS.gene019786.t1 AT3G29260 59.608 255 102 1 1 255 1 254 9.02e-103 300
MS.gene019786.t1 AT2G47130 57.752 258 108 1 1 258 1 257 1.98e-101 296
MS.gene019786.t1 AT2G47120 56.471 255 109 2 1 255 1 253 7.42e-98 287
MS.gene019786.t1 AT2G47120 56.972 251 106 2 5 255 6 254 1.11e-97 286
MS.gene019786.t1 AT3G51680 47.985 273 126 3 1 257 27 299 3.35e-75 231
MS.gene019786.t1 AT1G52340 46.269 268 131 6 4 259 16 282 5.66e-65 204
MS.gene019786.t1 AT3G26760 41.667 264 143 4 4 258 34 295 6.68e-63 199
MS.gene019786.t1 AT4G03140 43.295 261 140 5 4 258 76 334 6.84e-63 201
MS.gene019786.t1 AT3G26770 42.023 257 140 5 4 253 39 293 2.54e-60 193
MS.gene019786.t1 AT3G42960 43.629 259 134 4 4 253 6 261 6.30e-54 176
MS.gene019786.t1 AT2G47150 38.735 253 102 6 6 258 1 200 6.43e-41 140
MS.gene019786.t1 AT2G17845 27.715 267 167 8 6 255 47 304 1.98e-18 83.6
MS.gene019786.t1 AT4G05530 32.296 257 157 7 2 252 5 250 2.93e-18 82.0
MS.gene019786.t1 AT2G29150 31.818 264 153 11 3 254 13 261 2.47e-17 79.7
MS.gene019786.t1 AT3G55290 28.090 267 161 8 6 254 18 271 4.38e-17 79.3
MS.gene019786.t1 AT3G55290 28.090 267 161 8 6 254 17 270 4.87e-17 79.0
MS.gene019786.t1 AT2G30670 29.297 256 171 7 3 254 4 253 1.83e-16 77.0
MS.gene019786.t1 AT1G63380 27.715 267 163 9 6 254 22 276 1.85e-16 77.4
MS.gene019786.t1 AT1G07450 29.183 257 169 8 3 254 5 253 2.09e-16 77.0
MS.gene019786.t1 AT1G63380 27.715 267 163 9 6 254 19 273 2.33e-16 77.4
MS.gene019786.t1 AT1G63380 27.715 267 163 9 6 254 17 271 2.44e-16 77.0
MS.gene019786.t1 AT1G63380 27.715 267 163 9 6 254 15 269 2.50e-16 77.0
MS.gene019786.t1 AT2G29340 29.020 255 173 6 3 254 4 253 4.16e-16 76.3
MS.gene019786.t1 AT2G29340 29.020 255 173 6 3 254 4 253 5.29e-16 76.6
MS.gene019786.t1 AT1G62610 27.413 259 168 7 6 251 19 270 6.51e-16 75.9
MS.gene019786.t1 AT1G62610 27.413 259 168 7 6 251 13 264 7.11e-16 75.9
MS.gene019786.t1 AT3G55310 28.409 264 158 8 6 251 17 267 7.30e-16 75.9
MS.gene019786.t1 AT1G62610 27.413 259 168 7 6 251 14 265 7.42e-16 75.9
MS.gene019786.t1 AT1G62610 27.413 259 168 7 6 251 15 266 7.50e-16 75.9
MS.gene019786.t1 AT1G07440 28.794 257 170 8 3 254 9 257 1.70e-15 74.7
MS.gene019786.t1 AT2G29360 30.597 268 152 12 3 254 13 262 1.77e-15 74.7
MS.gene019786.t1 AT2G29310 28.405 257 172 7 3 254 4 253 2.26e-15 74.3
MS.gene019786.t1 AT1G24360 27.413 259 169 10 4 254 72 319 3.82e-15 74.3
MS.gene019786.t1 AT3G12800 28.626 262 167 9 6 254 10 264 4.97e-15 73.6
MS.gene019786.t1 AT2G29290 30.712 267 153 11 3 254 4 253 6.81e-15 72.8
MS.gene019786.t1 AT2G29330 29.183 257 170 7 3 254 4 253 8.10e-15 72.8
MS.gene019786.t1 AT3G46170 25.954 262 167 7 6 251 26 276 8.85e-15 72.8
MS.gene019786.t1 AT2G29370 30.153 262 161 10 3 254 13 262 1.19e-14 72.4
MS.gene019786.t1 AT5G19200 32.547 212 131 5 12 217 41 246 2.19e-14 72.0
MS.gene019786.t1 AT3G06060 30.180 222 143 5 2 217 50 265 4.93e-14 71.2
MS.gene019786.t1 AT5G06060 28.571 259 169 8 3 254 6 255 5.12e-14 70.5
MS.gene019786.t1 AT3G06060 30.180 222 143 5 2 217 33 248 5.23e-14 71.2
MS.gene019786.t1 AT1G54870 27.586 261 164 7 5 251 83 332 1.17e-13 70.1
MS.gene019786.t1 AT1G54870 27.586 261 164 7 5 251 81 330 1.34e-13 70.1
MS.gene019786.t1 AT5G65205 29.255 188 125 5 7 192 7 188 2.22e-13 68.9
MS.gene019786.t1 AT5G18210 30.233 258 163 8 6 252 8 259 5.81e-13 67.4
MS.gene019786.t1 AT1G49670 28.767 219 125 6 11 209 9 216 8.56e-13 68.2
MS.gene019786.t1 AT5G10050 28.042 189 126 6 7 192 6 187 8.94e-13 67.0
MS.gene019786.t1 AT1G49670 28.767 219 125 6 11 209 9 216 9.52e-13 68.2
MS.gene019786.t1 AT5G50600 30.168 179 120 3 1 176 40 216 1.38e-12 67.0
MS.gene019786.t1 AT5G50700 30.168 179 120 3 1 176 40 216 1.38e-12 67.0
MS.gene019786.t1 AT5G50770 30.526 190 126 4 1 187 40 226 2.15e-12 66.6
MS.gene019786.t1 AT1G10310 29.121 182 122 4 9 187 18 195 2.41e-12 65.5
MS.gene019786.t1 AT3G05260 25.670 261 174 8 5 254 36 287 3.87e-12 65.5
MS.gene019786.t1 AT2G29320 29.588 267 162 10 2 254 6 260 1.17e-11 63.9
MS.gene019786.t1 AT4G13180 29.845 258 165 7 6 254 13 263 1.27e-11 63.5
MS.gene019786.t1 AT2G29340 29.082 196 134 4 3 195 4 197 1.72e-11 62.4
MS.gene019786.t1 AT2G29340 29.082 196 134 4 3 195 4 197 1.72e-11 62.4

Find 53 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATAGTGTTTCCCCTTT+TGG 0.226669 6.2:-26207279 MS.gene019786:CDS
TGCATCAAAACATGCTCTTT+TGG 0.245464 6.2:-26207349 MS.gene019786:CDS
TTACATCAGTGGTCATAATT+TGG 0.260914 6.2:-26207106 MS.gene019786:CDS
GTGAAGTTGTTCGTCGAAAA+TGG 0.282900 6.2:-26207750 MS.gene019786:CDS
CATCAAGTTGTTTCTTCAAT+AGG 0.284749 6.2:-26207687 MS.gene019786:CDS
TTCTTGAACATTTAGGTTAG+AGG 0.321097 6.2:-26207823 MS.gene019786:intron
TTCAGCAATGCCGGAATATT+AGG 0.326721 6.2:-26207561 MS.gene019786:CDS
GTAGACATTCAAGATGAATT+AGG 0.344204 6.2:-26207711 MS.gene019786:CDS
GGAAGCGATCGTAAGTTCTA+AGG 0.349654 6.2:-26207205 MS.gene019786:CDS
TGTAGTGAACTTGGTTGTTA+TGG 0.360765 6.2:-26207309 MS.gene019786:CDS
CGGAATATTAGGCTCTTCAT+TGG 0.381028 6.2:-26207550 MS.gene019786:CDS
CAATGAAGAGCCTAATATTC+CGG 0.389833 6.2:+26207551 None:intergenic
ACAATAGATATAAATGTTGT+TGG 0.393513 6.2:-26207492 MS.gene019786:CDS
GGTCATAATTTGGTGGTTGA+TGG 0.405463 6.2:-26207096 MS.gene019786:CDS
GCAGCTTCTACCGGTGGAAC+TGG 0.415243 6.2:-26207387 MS.gene019786:CDS
CATACCATCATTGCGACGTT+AGG 0.415601 6.2:-26207650 MS.gene019786:CDS
AAAGGTGTTGCAACTCCAAA+AGG 0.424086 6.2:+26207264 None:intergenic
ACGATCGCTTCCACAACTTC+CGG 0.440285 6.2:+26207216 None:intergenic
TCTGAAGGGTGTTGTGTTGA+AGG 0.448691 6.2:-26207178 MS.gene019786:CDS
ACTGGTGCAGCCAGTGGAAT+TGG 0.449174 6.2:-26207783 MS.gene019786:CDS
GGTTCATAATATAAAACAAA+TGG 0.461191 6.2:-26207061 MS.gene019786:CDS
CATCCCTAACGTCGCAATGA+TGG 0.461260 6.2:+26207646 None:intergenic
AGAAACTGTTAATTTCACTT+TGG 0.484629 6.2:-26207610 MS.gene019786:CDS
CAAAATAGAGCCGGAAGTTG+TGG 0.492410 6.2:-26207226 MS.gene019786:CDS
ATACCATCATTGCGACGTTA+GGG 0.497406 6.2:-26207649 MS.gene019786:CDS
GGAATATTAGGCTCTTCATT+GGG 0.498127 6.2:-26207549 MS.gene019786:CDS
GATATCATGTTCAGCAATGC+CGG 0.499855 6.2:-26207570 MS.gene019786:CDS
TCTTGAACATTTAGGTTAGA+GGG 0.503233 6.2:-26207822 MS.gene019786:intron
GCAAGCGTGGCAGCTTCTAC+CGG 0.505412 6.2:-26207396 MS.gene019786:CDS
CATAATTTGGTGGTTGATGG+TGG 0.514887 6.2:-26207093 MS.gene019786:CDS
TGCCTCTTCACCAATTCCAC+TGG 0.515824 6.2:+26207773 None:intergenic
CATCAGTGGTCATAATTTGG+TGG 0.524756 6.2:-26207103 MS.gene019786:CDS
TAAGCACGCTGCTCGTGCTA+TGG 0.528874 6.2:-26207454 MS.gene019786:CDS
TTGATCGGTGCACACGCGAA+AGG 0.535273 6.2:+26207246 None:intergenic
AAGGTGTTGCAACTCCAAAA+GGG 0.538111 6.2:+26207265 None:intergenic
GGTAGAAGCTGCCACGCTTG+CGG 0.558287 6.2:+26207398 None:intergenic
AAGTTCTAAGGGTAATCTGA+AGG 0.564554 6.2:-26207193 MS.gene019786:CDS
CACCGTTGATGATGAAGCAA+AGG 0.574370 6.2:-26207989 None:intergenic
GATGAAGCTGTTTACATCAG+TGG 0.575837 6.2:-26207117 MS.gene019786:CDS
ACCACTAGGACCAGTTCCAC+CGG 0.583291 6.2:+26207377 None:intergenic
GAAGCGATCGTAAGTTCTAA+GGG 0.587496 6.2:-26207204 MS.gene019786:CDS
TGCACCGATCAAAATAGAGC+CGG 0.591663 6.2:-26207235 MS.gene019786:CDS
GGTAAGATAGCAATCATCAC+TGG 0.605060 6.2:-26207801 MS.gene019786:CDS
ATCATCACTGGTGCAGCCAG+TGG 0.607127 6.2:-26207789 MS.gene019786:CDS
AGAGCAGCATGTAGTGAACT+TGG 0.609647 6.2:-26207318 MS.gene019786:CDS
AGCGTGGCAGCTTCTACCGG+TGG 0.610387 6.2:-26207393 MS.gene019786:CDS
AGTTCTAAGGGTAATCTGAA+GGG 0.611602 6.2:-26207192 MS.gene019786:CDS
AGCCAGTGGAATTGGTGAAG+AGG 0.612587 6.2:-26207775 MS.gene019786:CDS
ACCGGTGGAACTGGTCCTAG+TGG 0.613286 6.2:-26207378 MS.gene019786:CDS
GATCATATGCACCGCAAGCG+TGG 0.623818 6.2:-26207409 MS.gene019786:CDS
GGTTGATGGTGGCTTCTCTG+TGG 0.628769 6.2:-26207082 MS.gene019786:CDS
AGGTGTTGCAACTCCAAAAG+GGG 0.636439 6.2:+26207266 None:intergenic
TTTGATGCAGTATAACCACT+AGG 0.646200 6.2:+26207363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAGATATAAATGTTGT+TGG - chr6.2:26207545-26207564 MS.gene019786:CDS 20.0%
!! GGTTCATAATATAAAACAAA+TGG - chr6.2:26207976-26207995 MS.gene019786:intron 20.0%
!! TCAAGAAAAACTAATCTAAA+GGG + chr6.2:26207123-26207142 None:intergenic 20.0%
!! TTCAAGAAAAACTAATCTAA+AGG + chr6.2:26207124-26207143 None:intergenic 20.0%
!!! TTTTTCTTTCTTGAACATTT+AGG - chr6.2:26207207-26207226 MS.gene019786:CDS 20.0%
! AGAAACTGTTAATTTCACTT+TGG - chr6.2:26207427-26207446 MS.gene019786:CDS 25.0%
! AGATACACACACATATATAT+AGG + chr6.2:26207078-26207097 None:intergenic 25.0%
! CAAGAAAAACTAATCTAAAG+GGG + chr6.2:26207122-26207141 None:intergenic 25.0%
! GATACACACACATATATATA+GGG + chr6.2:26207077-26207096 None:intergenic 25.0%
!! AATTTCACTTTGGAAAAACA+TGG - chr6.2:26207437-26207456 MS.gene019786:CDS 25.0%
!!! ATATGTGTGTGTATCTTTTT+TGG - chr6.2:26207082-26207101 MS.gene019786:CDS 25.0%
GTAGACATTCAAGATGAATT+AGG - chr6.2:26207326-26207345 MS.gene019786:CDS 30.0%
TTACATCAGTGGTCATAATT+TGG - chr6.2:26207931-26207950 MS.gene019786:intron 30.0%
! TCTTGAACATTTAGGTTAGA+GGG - chr6.2:26207215-26207234 MS.gene019786:CDS 30.0%
! TTCTTGAACATTTAGGTTAG+AGG - chr6.2:26207214-26207233 MS.gene019786:CDS 30.0%
!! CATCAAGTTGTTTCTTCAAT+AGG - chr6.2:26207350-26207369 MS.gene019786:CDS 30.0%
CAATGAAGAGCCTAATATTC+CGG + chr6.2:26207489-26207508 None:intergenic 35.0%
GGAATATTAGGCTCTTCATT+GGG - chr6.2:26207488-26207507 MS.gene019786:CDS 35.0%
TGTAGTGAACTTGGTTGTTA+TGG - chr6.2:26207728-26207747 MS.gene019786:CDS 35.0%
TTTGATGCAGTATAACCACT+AGG + chr6.2:26207677-26207696 None:intergenic 35.0%
! GCATCAAAACATGCTCTTTT+GGG - chr6.2:26207689-26207708 MS.gene019786:CDS 35.0%
! GTTAATAGTGTTTCCCCTTT+TGG - chr6.2:26207758-26207777 MS.gene019786:CDS 35.0%
! TGCATCAAAACATGCTCTTT+TGG - chr6.2:26207688-26207707 MS.gene019786:CDS 35.0%
!! AAGTTCTAAGGGTAATCTGA+AGG - chr6.2:26207844-26207863 MS.gene019786:intron 35.0%
!! AGTTCTAAGGGTAATCTGAA+GGG - chr6.2:26207845-26207864 MS.gene019786:intron 35.0%
ATACCATCATTGCGACGTTA+GGG - chr6.2:26207388-26207407 MS.gene019786:CDS 40.0%
ATGGTTGCCAAAAATGTTCG+TGG - chr6.2:26207602-26207621 MS.gene019786:CDS 40.0%
CATCAGTGGTCATAATTTGG+TGG - chr6.2:26207934-26207953 MS.gene019786:intron 40.0%
CGGAATATTAGGCTCTTCAT+TGG - chr6.2:26207487-26207506 MS.gene019786:CDS 40.0%
GATATCATGTTCAGCAATGC+CGG - chr6.2:26207467-26207486 MS.gene019786:CDS 40.0%
GATGAAGCTGTTTACATCAG+TGG - chr6.2:26207920-26207939 MS.gene019786:intron 40.0%
GGTAAGATAGCAATCATCAC+TGG - chr6.2:26207236-26207255 MS.gene019786:CDS 40.0%
GTGAAGTTGTTCGTCGAAAA+TGG - chr6.2:26207287-26207306 MS.gene019786:CDS 40.0%
TTCAGCAATGCCGGAATATT+AGG - chr6.2:26207476-26207495 MS.gene019786:CDS 40.0%
! GAAGCGATCGTAAGTTCTAA+GGG - chr6.2:26207833-26207852 MS.gene019786:intron 40.0%
! GATCGATCCACGAACATTTT+TGG + chr6.2:26207612-26207631 None:intergenic 40.0%
! GGTCATAATTTGGTGGTTGA+TGG - chr6.2:26207941-26207960 MS.gene019786:intron 40.0%
!! AAAGGTGTTGCAACTCCAAA+AGG + chr6.2:26207776-26207795 None:intergenic 40.0%
!! AAGGTGTTGCAACTCCAAAA+GGG + chr6.2:26207775-26207794 None:intergenic 40.0%
!! CATAATTTGGTGGTTGATGG+TGG - chr6.2:26207944-26207963 MS.gene019786:intron 40.0%
!!! ACTTCCGGCTCTATTTTGAT+CGG + chr6.2:26207809-26207828 None:intergenic 40.0%
AGAGCAGCATGTAGTGAACT+TGG - chr6.2:26207719-26207738 MS.gene019786:CDS 45.0%
CAAAATAGAGCCGGAAGTTG+TGG - chr6.2:26207811-26207830 MS.gene019786:CDS 45.0%
CATACCATCATTGCGACGTT+AGG - chr6.2:26207387-26207406 MS.gene019786:CDS 45.0%
CGACGTTAGGGATGAAAAAC+AGG - chr6.2:26207400-26207419 MS.gene019786:CDS 45.0%
GGAAGCGATCGTAAGTTCTA+AGG - chr6.2:26207832-26207851 MS.gene019786:intron 45.0%
! AGGTGTTGCAACTCCAAAAG+GGG + chr6.2:26207774-26207793 None:intergenic 45.0%
! TGCACCGATCAAAATAGAGC+CGG - chr6.2:26207802-26207821 MS.gene019786:CDS 45.0%
!! TCTGAAGGGTGTTGTGTTGA+AGG - chr6.2:26207859-26207878 MS.gene019786:intron 45.0%
ACGATCGCTTCCACAACTTC+CGG + chr6.2:26207824-26207843 None:intergenic 50.0%
AGCCAGTGGAATTGGTGAAG+AGG - chr6.2:26207262-26207281 MS.gene019786:CDS 50.0%
CATCCCTAACGTCGCAATGA+TGG + chr6.2:26207394-26207413 None:intergenic 50.0%
TGCCTCTTCACCAATTCCAC+TGG + chr6.2:26207267-26207286 None:intergenic 50.0%
ACCACTAGGACCAGTTCCAC+CGG + chr6.2:26207663-26207682 None:intergenic 55.0%
ACTGGTGCAGCCAGTGGAAT+TGG - chr6.2:26207254-26207273 MS.gene019786:CDS 55.0%
ATCATCACTGGTGCAGCCAG+TGG - chr6.2:26207248-26207267 MS.gene019786:CDS 55.0%
GATCATATGCACCGCAAGCG+TGG - chr6.2:26207628-26207647 MS.gene019786:CDS 55.0%
TAAGCACGCTGCTCGTGCTA+TGG - chr6.2:26207583-26207602 MS.gene019786:CDS 55.0%
TTGATCGGTGCACACGCGAA+AGG + chr6.2:26207794-26207813 None:intergenic 55.0%
!! GGTTGATGGTGGCTTCTCTG+TGG - chr6.2:26207955-26207974 MS.gene019786:intron 55.0%
ACCGGTGGAACTGGTCCTAG+TGG - chr6.2:26207659-26207678 MS.gene019786:CDS 60.0%
GCAAGCGTGGCAGCTTCTAC+CGG - chr6.2:26207641-26207660 MS.gene019786:CDS 60.0%
GCAGCTTCTACCGGTGGAAC+TGG - chr6.2:26207650-26207669 MS.gene019786:CDS 60.0%
GGTAGAAGCTGCCACGCTTG+CGG + chr6.2:26207642-26207661 None:intergenic 60.0%
AGCGTGGCAGCTTCTACCGG+TGG - chr6.2:26207644-26207663 MS.gene019786:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 26207056 26208003 26207056 ID=MS.gene019786
chr6.2 mRNA 26207056 26208003 26207056 ID=MS.gene019786.t1;Parent=MS.gene019786
chr6.2 exon 26207990 26208003 26207990 ID=MS.gene019786.t1.exon1;Parent=MS.gene019786.t1
chr6.2 CDS 26207990 26208003 26207990 ID=cds.MS.gene019786.t1;Parent=MS.gene019786.t1
chr6.2 exon 26207056 26207830 26207056 ID=MS.gene019786.t1.exon2;Parent=MS.gene019786.t1
chr6.2 CDS 26207056 26207830 26207056 ID=cds.MS.gene019786.t1;Parent=MS.gene019786.t1
Gene Sequence

>MS.gene019786

ATGATGAAGCAAAGGTATCCCTATATATATGTGTGTGTATCTTTTTTGGTGTAATATTTTTTTCCCCTTTAGATTAGTTTTTCTTGAAAATTGTTCATTCTAATTTGCACTTTTCAGCTCTATATATTTTGATTAGTTGACTTTACTTTTTTTTTTCTTTCTTGAACATTTAGGTTAGAGGGTAAGATAGCAATCATCACTGGTGCAGCCAGTGGAATTGGTGAAGAGGCAGTGAAGTTGTTCGTCGAAAATGGAGCATTTGTTGTTGCAGTAGACATTCAAGATGAATTAGGTCATCAAGTTGTTTCTTCAATAGGCTCAAATAAAGTGACATACCATCATTGCGACGTTAGGGATGAAAAACAGGTTGAAGAAACTGTTAATTTCACTTTGGAAAAACATGGTCAACTTGATATCATGTTCAGCAATGCCGGAATATTAGGCTCTTCATTGGGCATACTCGAATTCGATCTAAATGAATTCAAGAACACAATAGATATAAATGTTGTTGGTTCAGCTGCTATAATTAAGCACGCTGCTCGTGCTATGGTTGCCAAAAATGTTCGTGGATCGATCATATGCACCGCAAGCGTGGCAGCTTCTACCGGTGGAACTGGTCCTAGTGGTTATACTGCATCAAAACATGCTCTTTTGGGACTTGTAAGAGCAGCATGTAGTGAACTTGGTTGTTATGGAATAAGAGTTAATAGTGTTTCCCCTTTTGGAGTTGCAACACCTTTCGCGTGTGCACCGATCAAAATAGAGCCGGAAGTTGTGGAAGCGATCGTAAGTTCTAAGGGTAATCTGAAGGGTGTTGTGTTGAAGGCTAAGCATATTGCAGAAGCAGCTTTGTTTCTTGCTTCTGATGAAGCTGTTTACATCAGTGGTCATAATTTGGTGGTTGATGGTGGCTTCTCTGTGGTTCATAATATAAAACAAATGGTTTAA
Protein sequence

>MS.gene019786.t1

MMKQRLEGKIAIITGAASGIGEEAVKLFVENGAFVVAVDIQDELGHQVVSSIGSNKVTYHHCDVRDEKQVEETVNFTLEKHGQLDIMFSNAGILGSSLGILEFDLNEFKNTIDINVVGSAAIIKHAARAMVAKNVRGSIICTASVAASTGGTGPSGYTASKHALLGLVRAACSELGCYGIRVNSVSPFGVATPFACAPIKIEPEVVEAIVSSKGNLKGVVLKAKHIAEAALFLASDEAVYISGHNLVVDGGFSVVHNIKQMV