Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050862.t1 | XP_003626301.1 | 96 | 252 | 10 | 0 | 1 | 252 | 42 | 293 | 4.90E-133 | 483.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050862.t1 | Q9FZ42 | 78.6 | 252 | 54 | 0 | 1 | 252 | 37 | 288 | 1.1e-114 | 414.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050862.t1 | Q2HTL8 | 96.0 | 252 | 10 | 0 | 1 | 252 | 42 | 293 | 3.5e-133 | 483.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050862 | MS.gene066728 | 0.966943 | 1.33E-126 | -1.69E-46 |
| MS.gene050862 | MS.gene072462 | 0.898298 | 6.09E-77 | -1.69E-46 |
| MS.gene050862 | MS.gene29327 | 0.861871 | 7.56E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050862 | MS.gene072664 | PPI |
| MS.gene050862 | MS.gene07097 | PPI |
| MS.gene050862 | MS.gene021164 | PPI |
| MS.gene050862 | MS.gene31507 | PPI |
| MS.gene050862 | MS.gene28847 | PPI |
| MS.gene050862 | MS.gene07096 | PPI |
| MS.gene050862 | MS.gene03319 | PPI |
| MS.gene050862 | MS.gene043387 | PPI |
| MS.gene050431 | MS.gene050862 | PPI |
| MS.gene41122 | MS.gene050862 | PPI |
| MS.gene050862 | MS.gene30551 | PPI |
| MS.gene050862 | MS.gene055846 | PPI |
| MS.gene050862 | MS.gene85724 | PPI |
| MS.gene28848 | MS.gene050862 | PPI |
| MS.gene050862 | MS.gene80360 | PPI |
| MS.gene050862 | MS.gene028938 | PPI |
| MS.gene050862 | MS.gene003992 | PPI |
| MS.gene050432 | MS.gene050862 | PPI |
| MS.gene050862 | MS.gene019786 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050862.t1 | MTR_7g113650 | 98.810 | 252 | 3 | 0 | 1 | 252 | 42 | 293 | 0.0 | 518 |
| MS.gene050862.t1 | MTR_1g082760 | 88.446 | 251 | 29 | 0 | 1 | 251 | 42 | 292 | 3.51e-170 | 471 |
| MS.gene050862.t1 | MTR_4g131740 | 70.751 | 253 | 73 | 1 | 1 | 252 | 42 | 294 | 5.17e-131 | 372 |
| MS.gene050862.t1 | MTR_6g023590 | 33.462 | 260 | 146 | 9 | 1 | 247 | 15 | 260 | 4.70e-32 | 118 |
| MS.gene050862.t1 | MTR_6g023950 | 34.118 | 255 | 151 | 7 | 1 | 247 | 15 | 260 | 5.44e-31 | 115 |
| MS.gene050862.t1 | MTR_6g023610 | 32.950 | 261 | 150 | 8 | 1 | 249 | 15 | 262 | 1.96e-30 | 114 |
| MS.gene050862.t1 | MTR_6g023990 | 33.205 | 259 | 148 | 8 | 1 | 247 | 16 | 261 | 9.28e-30 | 112 |
| MS.gene050862.t1 | MTR_6g023600 | 34.615 | 260 | 143 | 9 | 1 | 247 | 15 | 260 | 1.74e-29 | 112 |
| MS.gene050862.t1 | MTR_3g085740 | 30.651 | 261 | 149 | 7 | 3 | 250 | 79 | 320 | 5.41e-29 | 112 |
| MS.gene050862.t1 | MTR_7g063270 | 33.858 | 254 | 152 | 8 | 1 | 247 | 18 | 262 | 2.57e-28 | 108 |
| MS.gene050862.t1 | MTR_6g023910 | 31.923 | 260 | 146 | 10 | 2 | 246 | 16 | 259 | 1.77e-26 | 103 |
| MS.gene050862.t1 | MTR_4g132850 | 28.000 | 250 | 166 | 6 | 1 | 247 | 9 | 247 | 2.77e-25 | 100 |
| MS.gene050862.t1 | MTR_4g052320 | 31.154 | 260 | 157 | 7 | 1 | 251 | 10 | 256 | 5.90e-25 | 100 |
| MS.gene050862.t1 | MTR_6g023600 | 33.846 | 260 | 139 | 10 | 1 | 247 | 15 | 254 | 2.12e-24 | 98.2 |
| MS.gene050862.t1 | MTR_7g063260 | 30.980 | 255 | 159 | 8 | 1 | 247 | 18 | 263 | 2.74e-24 | 98.2 |
| MS.gene050862.t1 | MTR_4g052300 | 30.502 | 259 | 156 | 7 | 1 | 250 | 10 | 253 | 3.18e-24 | 98.2 |
| MS.gene050862.t1 | MTR_4g078630 | 30.534 | 262 | 154 | 7 | 1 | 247 | 21 | 269 | 7.04e-24 | 97.4 |
| MS.gene050862.t1 | MTR_4g052350 | 29.134 | 254 | 166 | 6 | 1 | 250 | 16 | 259 | 1.80e-22 | 93.6 |
| MS.gene050862.t1 | MTR_8g442750 | 30.682 | 264 | 151 | 9 | 1 | 247 | 16 | 264 | 1.90e-22 | 94.0 |
| MS.gene050862.t1 | MTR_7g071680 | 29.091 | 275 | 154 | 8 | 1 | 247 | 31 | 292 | 2.47e-22 | 93.6 |
| MS.gene050862.t1 | MTR_4g052340 | 29.804 | 255 | 165 | 6 | 1 | 251 | 16 | 260 | 2.53e-22 | 93.2 |
| MS.gene050862.t1 | MTR_1196s0010 | 31.746 | 252 | 150 | 8 | 2 | 247 | 277 | 512 | 4.51e-22 | 95.1 |
| MS.gene050862.t1 | MTR_3g020670 | 30.769 | 260 | 158 | 6 | 1 | 247 | 18 | 268 | 2.67e-21 | 90.5 |
| MS.gene050862.t1 | MTR_4g064887 | 28.627 | 255 | 171 | 6 | 1 | 252 | 17 | 263 | 2.70e-21 | 90.1 |
| MS.gene050862.t1 | MTR_7g094510 | 28.682 | 258 | 163 | 7 | 2 | 249 | 9 | 255 | 3.35e-21 | 89.7 |
| MS.gene050862.t1 | MTR_7g105590 | 31.088 | 193 | 119 | 5 | 1 | 189 | 10 | 192 | 6.51e-21 | 87.4 |
| MS.gene050862.t1 | MTR_7g063320 | 28.077 | 260 | 166 | 7 | 1 | 250 | 17 | 265 | 1.79e-19 | 85.1 |
| MS.gene050862.t1 | MTR_7g110140 | 29.921 | 254 | 161 | 6 | 1 | 247 | 8 | 251 | 2.63e-19 | 84.7 |
| MS.gene050862.t1 | MTR_7g083870 | 29.615 | 260 | 159 | 7 | 1 | 247 | 37 | 285 | 3.99e-19 | 84.7 |
| MS.gene050862.t1 | MTR_3g068085 | 30.588 | 255 | 164 | 9 | 1 | 251 | 17 | 262 | 4.75e-19 | 84.3 |
| MS.gene050862.t1 | MTR_7g094520 | 27.953 | 254 | 170 | 6 | 2 | 249 | 14 | 260 | 7.61e-19 | 83.6 |
| MS.gene050862.t1 | MTR_4g058810 | 25.287 | 261 | 175 | 6 | 1 | 250 | 13 | 264 | 1.49e-18 | 82.8 |
| MS.gene050862.t1 | MTR_7g105580 | 28.854 | 253 | 147 | 9 | 1 | 247 | 10 | 235 | 1.74e-18 | 82.4 |
| MS.gene050862.t1 | MTR_4g064883 | 28.016 | 257 | 168 | 7 | 1 | 251 | 16 | 261 | 3.18e-18 | 82.0 |
| MS.gene050862.t1 | MTR_2g090165 | 28.137 | 263 | 163 | 8 | 1 | 251 | 8 | 256 | 3.44e-18 | 81.6 |
| MS.gene050862.t1 | MTR_7g063270 | 30.159 | 252 | 115 | 8 | 1 | 247 | 18 | 213 | 3.79e-18 | 80.5 |
| MS.gene050862.t1 | MTR_4g058840 | 25.287 | 261 | 175 | 6 | 1 | 250 | 13 | 264 | 6.99e-18 | 80.9 |
| MS.gene050862.t1 | MTR_4g058820 | 25.287 | 261 | 175 | 6 | 1 | 250 | 13 | 264 | 6.99e-18 | 80.9 |
| MS.gene050862.t1 | MTR_7g110130 | 27.481 | 262 | 169 | 8 | 1 | 252 | 8 | 258 | 1.01e-17 | 80.5 |
| MS.gene050862.t1 | MTR_7g105460 | 32.653 | 196 | 120 | 4 | 1 | 193 | 15 | 201 | 2.04e-17 | 79.7 |
| MS.gene050862.t1 | MTR_7g063390 | 25.969 | 258 | 174 | 7 | 1 | 250 | 18 | 266 | 6.90e-17 | 78.2 |
| MS.gene050862.t1 | MTR_7g110160 | 29.008 | 262 | 144 | 9 | 1 | 251 | 8 | 238 | 8.93e-17 | 77.4 |
| MS.gene050862.t1 | MTR_3g068070 | 31.890 | 254 | 162 | 8 | 1 | 251 | 17 | 262 | 1.20e-16 | 77.4 |
| MS.gene050862.t1 | MTR_7g107670 | 25.194 | 258 | 170 | 6 | 2 | 247 | 36 | 282 | 1.97e-16 | 77.4 |
| MS.gene050862.t1 | MTR_8g096620 | 26.860 | 242 | 165 | 5 | 1 | 241 | 47 | 277 | 4.90e-16 | 76.6 |
| MS.gene050862.t1 | MTR_7g063330 | 27.344 | 256 | 166 | 7 | 1 | 247 | 17 | 261 | 1.16e-15 | 74.7 |
| MS.gene050862.t1 | MTR_6g035395 | 28.346 | 254 | 152 | 6 | 1 | 247 | 7 | 237 | 2.47e-15 | 73.6 |
| MS.gene050862.t1 | MTR_3g068175 | 27.451 | 255 | 172 | 6 | 1 | 251 | 19 | 264 | 3.67e-15 | 73.6 |
| MS.gene050862.t1 | MTR_3g068065 | 28.016 | 257 | 168 | 10 | 1 | 251 | 19 | 264 | 7.73e-15 | 72.8 |
| MS.gene050862.t1 | MTR_3g087850 | 30.570 | 193 | 112 | 7 | 3 | 189 | 30 | 206 | 8.76e-15 | 72.8 |
| MS.gene050862.t1 | MTR_4g097510 | 30.189 | 212 | 124 | 6 | 2 | 206 | 5 | 199 | 1.03e-14 | 72.4 |
| MS.gene050862.t1 | MTR_1g068955 | 27.059 | 255 | 166 | 6 | 2 | 246 | 17 | 261 | 1.21e-14 | 72.0 |
| MS.gene050862.t1 | MTR_8g096580 | 28.311 | 219 | 143 | 6 | 2 | 217 | 48 | 255 | 4.30e-14 | 70.9 |
| MS.gene050862.t1 | MTR_3g087860 | 34.375 | 128 | 79 | 3 | 65 | 189 | 66 | 191 | 3.05e-13 | 68.2 |
| MS.gene050862.t1 | MTR_7g063360 | 26.054 | 261 | 170 | 8 | 1 | 250 | 18 | 266 | 4.43e-13 | 67.4 |
| MS.gene050862.t1 | MTR_3g068175 | 27.027 | 259 | 172 | 7 | 1 | 251 | 19 | 268 | 4.61e-13 | 67.8 |
| MS.gene050862.t1 | MTR_7g080410 | 27.136 | 199 | 126 | 6 | 2 | 191 | 41 | 229 | 2.33e-12 | 65.9 |
| MS.gene050862.t1 | MTR_7g080410 | 27.136 | 199 | 126 | 6 | 2 | 191 | 41 | 229 | 2.77e-12 | 65.9 |
| MS.gene050862.t1 | MTR_4g064887 | 27.179 | 195 | 133 | 4 | 1 | 193 | 17 | 204 | 4.86e-12 | 63.9 |
| MS.gene050862.t1 | MTR_1304s0010 | 30.108 | 186 | 126 | 3 | 63 | 247 | 23 | 205 | 2.32e-11 | 62.0 |
| MS.gene050862.t1 | MTR_5g008850 | 25.439 | 228 | 153 | 6 | 2 | 220 | 48 | 267 | 3.41e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050862.t1 | AT1G54870 | 80.159 | 252 | 50 | 0 | 1 | 252 | 84 | 335 | 1.85e-157 | 441 |
| MS.gene050862.t1 | AT1G54870 | 80.159 | 252 | 50 | 0 | 1 | 252 | 86 | 337 | 2.56e-157 | 440 |
| MS.gene050862.t1 | AT3G05260 | 72.619 | 252 | 68 | 1 | 1 | 252 | 39 | 289 | 5.46e-140 | 394 |
| MS.gene050862.t1 | AT4G05530 | 30.000 | 250 | 161 | 6 | 1 | 247 | 11 | 249 | 9.52e-25 | 99.4 |
| MS.gene050862.t1 | AT5G06060 | 33.333 | 255 | 157 | 8 | 1 | 251 | 11 | 256 | 4.99e-23 | 94.7 |
| MS.gene050862.t1 | AT3G51680 | 28.889 | 270 | 159 | 9 | 1 | 247 | 34 | 293 | 1.21e-21 | 92.0 |
| MS.gene050862.t1 | AT1G24360 | 27.778 | 252 | 168 | 5 | 3 | 250 | 78 | 319 | 1.43e-21 | 92.0 |
| MS.gene050862.t1 | AT2G29350 | 31.518 | 257 | 158 | 7 | 1 | 251 | 17 | 261 | 3.59e-21 | 90.1 |
| MS.gene050862.t1 | AT3G42960 | 29.389 | 262 | 156 | 5 | 2 | 247 | 11 | 259 | 9.02e-21 | 89.0 |
| MS.gene050862.t1 | AT3G04000 | 28.077 | 260 | 174 | 7 | 1 | 250 | 16 | 272 | 1.10e-20 | 88.6 |
| MS.gene050862.t1 | AT2G29150 | 31.518 | 257 | 158 | 8 | 1 | 251 | 18 | 262 | 1.11e-20 | 88.6 |
| MS.gene050862.t1 | AT3G26770 | 28.462 | 260 | 162 | 8 | 1 | 247 | 43 | 291 | 1.18e-20 | 89.4 |
| MS.gene050862.t1 | AT2G47140 | 29.730 | 259 | 155 | 6 | 1 | 247 | 8 | 251 | 1.30e-20 | 88.2 |
| MS.gene050862.t1 | AT3G29260 | 30.469 | 256 | 156 | 7 | 1 | 247 | 8 | 250 | 2.65e-20 | 87.4 |
| MS.gene050862.t1 | AT3G29250 | 29.297 | 256 | 160 | 7 | 1 | 247 | 8 | 251 | 2.98e-20 | 87.4 |
| MS.gene050862.t1 | AT2G29260 | 30.315 | 254 | 166 | 6 | 1 | 251 | 70 | 315 | 3.80e-20 | 88.2 |
| MS.gene050862.t1 | AT1G63380 | 25.483 | 259 | 176 | 6 | 2 | 250 | 20 | 271 | 7.29e-20 | 86.7 |
| MS.gene050862.t1 | AT1G63380 | 25.483 | 259 | 176 | 6 | 2 | 250 | 25 | 276 | 7.38e-20 | 86.7 |
| MS.gene050862.t1 | AT1G52340 | 28.517 | 263 | 163 | 8 | 1 | 247 | 20 | 273 | 7.62e-20 | 86.7 |
| MS.gene050862.t1 | AT1G63380 | 25.483 | 259 | 176 | 6 | 2 | 250 | 22 | 273 | 8.23e-20 | 86.7 |
| MS.gene050862.t1 | AT1G63380 | 25.483 | 259 | 176 | 6 | 2 | 250 | 18 | 269 | 9.13e-20 | 86.3 |
| MS.gene050862.t1 | AT3G29250 | 29.297 | 256 | 160 | 7 | 1 | 247 | 44 | 287 | 1.20e-19 | 86.3 |
| MS.gene050862.t1 | AT2G47120 | 30.268 | 261 | 155 | 8 | 1 | 250 | 9 | 253 | 1.28e-19 | 85.5 |
| MS.gene050862.t1 | AT3G29250 | 29.297 | 256 | 160 | 7 | 1 | 247 | 46 | 289 | 1.57e-19 | 85.9 |
| MS.gene050862.t1 | AT2G47120 | 30.078 | 256 | 162 | 6 | 1 | 250 | 8 | 252 | 1.67e-19 | 85.1 |
| MS.gene050862.t1 | AT2G47130 | 29.572 | 257 | 157 | 7 | 1 | 247 | 8 | 250 | 5.17e-19 | 84.0 |
| MS.gene050862.t1 | AT2G29290 | 29.572 | 257 | 164 | 7 | 1 | 251 | 9 | 254 | 5.70e-19 | 84.0 |
| MS.gene050862.t1 | AT1G07440 | 29.344 | 259 | 159 | 7 | 2 | 251 | 15 | 258 | 8.06e-19 | 83.6 |
| MS.gene050862.t1 | AT5G10050 | 32.812 | 192 | 113 | 5 | 3 | 191 | 9 | 187 | 1.40e-18 | 83.2 |
| MS.gene050862.t1 | AT1G62610 | 25.097 | 259 | 177 | 6 | 2 | 250 | 16 | 267 | 1.86e-18 | 82.8 |
| MS.gene050862.t1 | AT1G62610 | 25.097 | 259 | 177 | 6 | 2 | 250 | 17 | 268 | 1.92e-18 | 82.8 |
| MS.gene050862.t1 | AT1G62610 | 25.097 | 259 | 177 | 6 | 2 | 250 | 18 | 269 | 2.14e-18 | 82.4 |
| MS.gene050862.t1 | AT5G18210 | 28.958 | 259 | 160 | 9 | 1 | 246 | 10 | 257 | 2.21e-18 | 82.4 |
| MS.gene050862.t1 | AT1G62610 | 25.806 | 248 | 167 | 6 | 2 | 239 | 22 | 262 | 2.35e-18 | 82.4 |
| MS.gene050862.t1 | AT3G03980 | 27.969 | 261 | 170 | 8 | 1 | 249 | 16 | 270 | 2.45e-18 | 82.4 |
| MS.gene050862.t1 | AT3G12800 | 28.897 | 263 | 158 | 9 | 1 | 247 | 12 | 261 | 2.66e-18 | 82.8 |
| MS.gene050862.t1 | AT3G55290 | 27.347 | 245 | 166 | 7 | 2 | 239 | 21 | 260 | 1.73e-17 | 80.1 |
| MS.gene050862.t1 | AT3G55290 | 27.347 | 245 | 166 | 7 | 2 | 239 | 20 | 259 | 1.79e-17 | 80.1 |
| MS.gene050862.t1 | AT2G29360 | 29.572 | 257 | 164 | 7 | 1 | 251 | 18 | 263 | 3.01e-17 | 79.3 |
| MS.gene050862.t1 | AT4G13180 | 25.581 | 258 | 175 | 7 | 1 | 250 | 15 | 263 | 3.10e-17 | 79.0 |
| MS.gene050862.t1 | AT2G17845 | 26.953 | 256 | 172 | 9 | 2 | 247 | 50 | 300 | 6.50e-17 | 79.0 |
| MS.gene050862.t1 | AT3G26760 | 26.136 | 264 | 165 | 10 | 1 | 247 | 38 | 288 | 1.22e-16 | 78.2 |
| MS.gene050862.t1 | AT4G03140 | 27.481 | 262 | 161 | 7 | 1 | 247 | 80 | 327 | 1.38e-16 | 78.2 |
| MS.gene050862.t1 | AT2G30670 | 29.885 | 261 | 158 | 9 | 1 | 251 | 9 | 254 | 2.20e-16 | 76.6 |
| MS.gene050862.t1 | AT5G50600 | 25.500 | 200 | 139 | 5 | 1 | 198 | 47 | 238 | 2.80e-16 | 77.4 |
| MS.gene050862.t1 | AT5G50700 | 25.500 | 200 | 139 | 5 | 1 | 198 | 47 | 238 | 2.80e-16 | 77.4 |
| MS.gene050862.t1 | AT2G29310 | 31.034 | 261 | 157 | 10 | 1 | 252 | 9 | 255 | 5.98e-16 | 75.5 |
| MS.gene050862.t1 | AT5G18210 | 28.279 | 244 | 152 | 8 | 1 | 231 | 10 | 243 | 7.97e-16 | 75.5 |
| MS.gene050862.t1 | AT2G29350 | 30.415 | 217 | 142 | 6 | 41 | 251 | 10 | 223 | 1.32e-15 | 73.9 |
| MS.gene050862.t1 | AT3G47350 | 24.206 | 252 | 160 | 7 | 1 | 233 | 46 | 285 | 4.49e-15 | 73.6 |
| MS.gene050862.t1 | AT2G29290 | 30.208 | 192 | 128 | 5 | 64 | 251 | 48 | 237 | 1.17e-14 | 71.6 |
| MS.gene050862.t1 | AT3G55310 | 26.016 | 246 | 168 | 6 | 2 | 239 | 20 | 259 | 1.40e-14 | 72.0 |
| MS.gene050862.t1 | AT3G47350 | 25.592 | 211 | 143 | 5 | 1 | 209 | 46 | 244 | 2.35e-14 | 71.6 |
| MS.gene050862.t1 | AT5G65205 | 28.947 | 190 | 119 | 5 | 3 | 189 | 10 | 186 | 2.90e-14 | 71.2 |
| MS.gene050862.t1 | AT2G29370 | 27.481 | 262 | 163 | 10 | 1 | 251 | 18 | 263 | 6.14e-14 | 70.1 |
| MS.gene050862.t1 | AT2G29310 | 35.632 | 174 | 103 | 6 | 84 | 252 | 84 | 253 | 7.48e-14 | 69.7 |
| MS.gene050862.t1 | AT2G29330 | 29.885 | 261 | 158 | 10 | 1 | 251 | 9 | 254 | 1.70e-13 | 68.6 |
| MS.gene050862.t1 | AT5G50690 | 29.534 | 193 | 122 | 7 | 1 | 189 | 47 | 229 | 4.34e-13 | 67.4 |
| MS.gene050862.t1 | AT5G50590 | 29.534 | 193 | 122 | 7 | 1 | 189 | 47 | 229 | 4.34e-13 | 67.4 |
| MS.gene050862.t1 | AT5G50690 | 29.534 | 193 | 122 | 7 | 1 | 189 | 47 | 229 | 4.83e-13 | 67.8 |
| MS.gene050862.t1 | AT5G50590 | 29.534 | 193 | 122 | 7 | 1 | 189 | 47 | 229 | 4.83e-13 | 67.8 |
| MS.gene050862.t1 | AT2G29340 | 27.843 | 255 | 171 | 6 | 1 | 251 | 9 | 254 | 5.06e-13 | 67.4 |
| MS.gene050862.t1 | AT2G29340 | 27.843 | 255 | 171 | 6 | 1 | 251 | 9 | 254 | 8.71e-13 | 67.0 |
| MS.gene050862.t1 | AT3G46170 | 25.131 | 191 | 134 | 4 | 2 | 187 | 29 | 215 | 1.99e-12 | 65.9 |
| MS.gene050862.t1 | AT3G47360 | 25.592 | 211 | 141 | 7 | 2 | 209 | 48 | 245 | 6.95e-12 | 64.7 |
| MS.gene050862.t1 | AT5G50770 | 26.702 | 191 | 126 | 6 | 1 | 187 | 47 | 227 | 2.91e-11 | 63.2 |
Find 62 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGGAAGCTGGTATTAA+TGG | 0.282146 | 7.1:+2809510 | None:intergenic |
| GGGTTGCACCTGGACCTATT+TGG | 0.290135 | 7.1:-2809536 | MS.gene050862:CDS |
| TTACCTGGTCATGAAGAAAT+AGG | 0.312741 | 7.1:+2809806 | None:intergenic |
| TGCAACTTGTTTGCATTAGA+AGG | 0.324302 | 7.1:-2810113 | MS.gene050862:CDS |
| TCCTTCCTTCATATGCTTCA+AGG | 0.325854 | 7.1:+2809701 | None:intergenic |
| CACCGTTAGGGTGGAGGACT+TGG | 0.340636 | 7.1:+2809367 | None:intergenic |
| GGTATTAATGGAGTCCAAAT+AGG | 0.375889 | 7.1:+2809522 | None:intergenic |
| CAATGCTCCTCTTACATAAC+TGG | 0.377326 | 7.1:-2809390 | MS.gene050862:CDS |
| GGCTGTCCAGCCCTCTTCAT+TGG | 0.397093 | 7.1:+2809453 | None:intergenic |
| GATGAGATCATCAATGCTTA+TGG | 0.400046 | 7.1:-2809936 | MS.gene050862:CDS |
| AAGGAGGGAGCAACCTCAAC+AGG | 0.426792 | 7.1:+2809432 | None:intergenic |
| GAGGAAAAGACTGCTCAGTT+TGG | 0.445973 | 7.1:-2809486 | MS.gene050862:CDS |
| AGCAAAGGTATAAGAGTGAA+TGG | 0.447089 | 7.1:-2809558 | MS.gene050862:CDS |
| GATTGACTACACGTCTACTA+AGG | 0.451933 | 7.1:-2809625 | MS.gene050862:CDS |
| ACTGGAGGTGACTCTGGAAT+AGG | 0.468261 | 7.1:-2810146 | MS.gene050862:CDS |
| GTGGTGACTGGAGGTGACTC+TGG | 0.474334 | 7.1:-2810152 | MS.gene050862:CDS |
| TATGTAAGAGGAGCATTGGT+TGG | 0.483625 | 7.1:+2809395 | None:intergenic |
| CTAAACACCCTCTCGAGTCT+TGG | 0.486019 | 7.1:+2809843 | None:intergenic |
| GGAAAGATAGCAGTGGTGAC+TGG | 0.488593 | 7.1:-2810164 | MS.gene050862:CDS |
| GCAAAGGTATAAGAGTGAAT+GGG | 0.489864 | 7.1:-2809557 | MS.gene050862:CDS |
| TCATCAAAACCAAGGTCAGC+TGG | 0.503738 | 7.1:+2809978 | None:intergenic |
| AGAGTGAATGGGGTTGCACC+TGG | 0.511342 | 7.1:-2809546 | MS.gene050862:CDS |
| GACTTGGCCAGTTATGTAAG+AGG | 0.522164 | 7.1:+2809383 | None:intergenic |
| TCTCCTATTTCTTCATGACC+AGG | 0.531066 | 7.1:-2809809 | MS.gene050862:intron |
| CATCAGTGAATGCATACAAA+GGG | 0.536432 | 7.1:-2809659 | MS.gene050862:CDS |
| CAGTTATGTAAGAGGAGCAT+TGG | 0.539760 | 7.1:+2809391 | None:intergenic |
| AGGTCAGCTGGTATAGCCAT+TGG | 0.542312 | 7.1:+2809990 | None:intergenic |
| TTATAAGTATATCACCGTTA+GGG | 0.544380 | 7.1:+2809355 | None:intergenic |
| TGCAATTCTCATCAAAACCA+AGG | 0.551588 | 7.1:+2809970 | None:intergenic |
| GCCTTGAAGCATATGAAGGA+AGG | 0.554851 | 7.1:-2809702 | MS.gene050862:CDS |
| AATGGAGTCCAAATAGGTCC+AGG | 0.558031 | 7.1:+2809528 | None:intergenic |
| TCACTTCAGCTTGTGAGCAA+AGG | 0.563107 | 7.1:-2809573 | MS.gene050862:CDS |
| GTATATCACCGTTAGGGTGG+AGG | 0.563677 | 7.1:+2809361 | None:intergenic |
| TGATGAGAATTGCAAAAGAG+TGG | 0.563781 | 7.1:-2809961 | MS.gene050862:CDS |
| ATGGCTATACCAGCTGACCT+TGG | 0.565262 | 7.1:-2809987 | MS.gene050862:CDS |
| GATGTGCCAATGAAGAGGGC+TGG | 0.569113 | 7.1:-2809459 | MS.gene050862:CDS |
| TGCAAATGCTAAAGATCCAA+TGG | 0.571331 | 7.1:-2810006 | MS.gene050862:CDS |
| GTCATGAAGACAAGGACGCA+AGG | 0.575782 | 7.1:-2810061 | MS.gene050862:CDS |
| GCATGCCTTGAAGCATATGA+AGG | 0.582221 | 7.1:-2809706 | MS.gene050862:CDS |
| GTATGAGTGTGGTTCAGTTG+AGG | 0.586482 | 7.1:-2809877 | MS.gene050862:CDS |
| AATACCAGCTTCCTTCAATG+AGG | 0.587076 | 7.1:-2809505 | MS.gene050862:CDS |
| TAAGTATATCACCGTTAGGG+TGG | 0.587839 | 7.1:+2809358 | None:intergenic |
| CAAAGGTATAAGAGTGAATG+GGG | 0.588385 | 7.1:-2809556 | MS.gene050862:CDS |
| ATTGACTACACGTCTACTAA+GGG | 0.600043 | 7.1:-2809624 | MS.gene050862:CDS |
| GTCTACTAAGGGTGCCATTG+TGG | 0.601115 | 7.1:-2809613 | MS.gene050862:CDS |
| GGCCAAGTCCTCCACCCTAA+CGG | 0.603755 | 7.1:-2809369 | MS.gene050862:intron |
| TGATGAACCAAGACTCGAGA+GGG | 0.616091 | 7.1:-2809850 | MS.gene050862:CDS |
| TCATGAAGACAAGGACGCAA+GGG | 0.631777 | 7.1:-2810060 | MS.gene050862:CDS |
| ACATCAGTGAATGCATACAA+AGG | 0.633175 | 7.1:-2809660 | MS.gene050862:CDS |
| GAAGCAAGAAACACAAAGGA+GGG | 0.642980 | 7.1:+2809417 | None:intergenic |
| TGCCCTTGTAAAAGCCACAA+TGG | 0.645018 | 7.1:+2809599 | None:intergenic |
| GAGGGCTGGACAGCCTGTTG+AGG | 0.646836 | 7.1:-2809445 | MS.gene050862:CDS |
| GGAAGCAAGAAACACAAAGG+AGG | 0.652897 | 7.1:+2809416 | None:intergenic |
| TAGTGATGTGCCAATGAAGA+GGG | 0.666583 | 7.1:-2809463 | MS.gene050862:CDS |
| AAGATAGCAGTGGTGACTGG+AGG | 0.668759 | 7.1:-2810161 | MS.gene050862:CDS |
| GTAGTGATGTGCCAATGAAG+AGG | 0.682060 | 7.1:-2809464 | MS.gene050862:CDS |
| TGTGAAGGGTCATGAAGACA+AGG | 0.693670 | 7.1:-2810069 | MS.gene050862:CDS |
| GTTGGAAGCAAGAAACACAA+AGG | 0.702058 | 7.1:+2809413 | None:intergenic |
| TTGATGAACCAAGACTCGAG+AGG | 0.710937 | 7.1:-2809851 | MS.gene050862:CDS |
| CACCATCTATGCATTCACAA+CGG | 0.721804 | 7.1:+2809251 | None:intergenic |
| GCAGCTGAGCAGTATGAGTG+TGG | 0.735028 | 7.1:-2809888 | MS.gene050862:CDS |
| CACATATGTGAAAATCACAG+TGG | 0.762212 | 7.1:+2810088 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATTAAATTAGATAAAT+CGG | - | chr7.1:2809647-2809666 | MS.gene050862:CDS | 10.0% |
| !! | TTATCTAATTTAATTAAGAG+TGG | + | chr7.1:2809645-2809664 | None:intergenic | 15.0% |
| !!! | CTTTTCATTTTTTATTTTTC+AGG | - | chr7.1:2810142-2810161 | MS.gene050862:CDS | 15.0% |
| !!! | TTCATTTTTTATTTTTCAGG+AGG | - | chr7.1:2810145-2810164 | MS.gene050862:CDS | 20.0% |
| ! | ATATTTGTTCACACATTCTA+TGG | - | chr7.1:2810104-2810123 | MS.gene050862:CDS | 25.0% |
| ! | CACACTTGATATGTTAAAAA+TGG | - | chr7.1:2809385-2809404 | MS.gene050862:CDS | 25.0% |
| ! | TGACTAACTATTTGTGTAAT+AGG | - | chr7.1:2809693-2809712 | MS.gene050862:CDS | 25.0% |
| ! | TGATATGTTAAAAATGGCTA+AGG | - | chr7.1:2809391-2809410 | MS.gene050862:CDS | 25.0% |
| ! | TTATAAGTATATCACCGTTA+GGG | + | chr7.1:2810069-2810088 | None:intergenic | 25.0% |
| ! | TTTATAAGTATATCACCGTT+AGG | + | chr7.1:2810070-2810089 | None:intergenic | 25.0% |
| !!! | GATGTTATTTCATGAATTTG+GGG | - | chr7.1:2809669-2809688 | MS.gene050862:CDS | 25.0% |
| !!! | GGATGTTATTTCATGAATTT+GGG | - | chr7.1:2809668-2809687 | MS.gene050862:CDS | 25.0% |
| ATTAAGAGTGGTTTATTACC+TGG | + | chr7.1:2809633-2809652 | None:intergenic | 30.0% | |
| ! | GTGATTTTCACATATGTGAA+GGG | - | chr7.1:2809338-2809357 | MS.gene050862:intron | 30.0% |
| ! | TGTGATTTTCACATATGTGA+AGG | - | chr7.1:2809337-2809356 | MS.gene050862:intron | 30.0% |
| !! | CGGATGTTATTTCATGAATT+TGG | - | chr7.1:2809667-2809686 | MS.gene050862:CDS | 30.0% |
| ACATCAGTGAATGCATACAA+AGG | - | chr7.1:2809761-2809780 | MS.gene050862:intron | 35.0% | |
| ATTGACTACACGTCTACTAA+GGG | - | chr7.1:2809797-2809816 | MS.gene050862:intron | 35.0% | |
| CACATATGTGAAAATCACAG+TGG | + | chr7.1:2809336-2809355 | None:intergenic | 35.0% | |
| CATCAGTGAATGCATACAAA+GGG | - | chr7.1:2809762-2809781 | MS.gene050862:intron | 35.0% | |
| GATGAGATCATCAATGCTTA+TGG | - | chr7.1:2809485-2809504 | MS.gene050862:CDS | 35.0% | |
| GGTATTAATGGAGTCCAAAT+AGG | + | chr7.1:2809902-2809921 | None:intergenic | 35.0% | |
| TGATGAGAATTGCAAAAGAG+TGG | - | chr7.1:2809460-2809479 | MS.gene050862:CDS | 35.0% | |
| TGCAAATGCTAAAGATCCAA+TGG | - | chr7.1:2809415-2809434 | MS.gene050862:CDS | 35.0% | |
| TGCAATTCTCATCAAAACCA+AGG | + | chr7.1:2809454-2809473 | None:intergenic | 35.0% | |
| TTACCTGGTCATGAAGAAAT+AGG | + | chr7.1:2809618-2809637 | None:intergenic | 35.0% | |
| TTGAAGGAAGCTGGTATTAA+TGG | + | chr7.1:2809914-2809933 | None:intergenic | 35.0% | |
| ! | AGCAAAGGTATAAGAGTGAA+TGG | - | chr7.1:2809863-2809882 | MS.gene050862:CDS | 35.0% |
| ! | CAAAGGTATAAGAGTGAATG+GGG | - | chr7.1:2809865-2809884 | MS.gene050862:CDS | 35.0% |
| ! | GCAAAGGTATAAGAGTGAAT+GGG | - | chr7.1:2809864-2809883 | MS.gene050862:CDS | 35.0% |
| ! | TGCAACTTGTTTGCATTAGA+AGG | - | chr7.1:2809308-2809327 | MS.gene050862:intron | 35.0% |
| AATACCAGCTTCCTTCAATG+AGG | - | chr7.1:2809916-2809935 | MS.gene050862:CDS | 40.0% | |
| CAATGCTCCTCTTACATAAC+TGG | - | chr7.1:2810031-2810050 | MS.gene050862:CDS | 40.0% | |
| GAAGCAAGAAACACAAAGGA+GGG | + | chr7.1:2810007-2810026 | None:intergenic | 40.0% | |
| GATTGACTACACGTCTACTA+AGG | - | chr7.1:2809796-2809815 | MS.gene050862:intron | 40.0% | |
| GTTGGAAGCAAGAAACACAA+AGG | + | chr7.1:2810011-2810030 | None:intergenic | 40.0% | |
| TAAGTATATCACCGTTAGGG+TGG | + | chr7.1:2810066-2810085 | None:intergenic | 40.0% | |
| TAGTGATGTGCCAATGAAGA+GGG | - | chr7.1:2809958-2809977 | MS.gene050862:CDS | 40.0% | |
| TCCTTCCTTCATATGCTTCA+AGG | + | chr7.1:2809723-2809742 | None:intergenic | 40.0% | |
| ! | AGCAGTCTTTTCCTCATTGA+AGG | + | chr7.1:2809930-2809949 | None:intergenic | 40.0% |
| ! | CAGTTATGTAAGAGGAGCAT+TGG | + | chr7.1:2810033-2810052 | None:intergenic | 40.0% |
| ! | TCTCCTATTTCTTCATGACC+AGG | - | chr7.1:2809612-2809631 | MS.gene050862:CDS | 40.0% |
| ! | TGCCATTGTGGCTTTTACAA+GGG | - | chr7.1:2809820-2809839 | MS.gene050862:CDS | 40.0% |
| ! | TTTTCCTCATTGAAGGAAGC+TGG | + | chr7.1:2809923-2809942 | None:intergenic | 40.0% |
| !! | TATGTAAGAGGAGCATTGGT+TGG | + | chr7.1:2810029-2810048 | None:intergenic | 40.0% |
| AATGGAGTCCAAATAGGTCC+AGG | + | chr7.1:2809896-2809915 | None:intergenic | 45.0% | |
| AGGAACCGTTGTGAATGCAT+AGG | - | chr7.1:2810165-2810184 | MS.gene050862:CDS | 45.0% | |
| GACTTGGCCAGTTATGTAAG+AGG | + | chr7.1:2810041-2810060 | None:intergenic | 45.0% | |
| GAGGAAAAGACTGCTCAGTT+TGG | - | chr7.1:2809935-2809954 | MS.gene050862:CDS | 45.0% | |
| GCATGCCTTGAAGCATATGA+AGG | - | chr7.1:2809715-2809734 | MS.gene050862:intron | 45.0% | |
| GCCTTGAAGCATATGAAGGA+AGG | - | chr7.1:2809719-2809738 | MS.gene050862:intron | 45.0% | |
| GGAACCGTTGTGAATGCATA+GGG | - | chr7.1:2810166-2810185 | MS.gene050862:CDS | 45.0% | |
| GGAAGCAAGAAACACAAAGG+AGG | + | chr7.1:2810008-2810027 | None:intergenic | 45.0% | |
| GTAGTGATGTGCCAATGAAG+AGG | - | chr7.1:2809957-2809976 | MS.gene050862:CDS | 45.0% | |
| GTATGAGTGTGGTTCAGTTG+AGG | - | chr7.1:2809544-2809563 | MS.gene050862:CDS | 45.0% | |
| TCACTTCAGCTTGTGAGCAA+AGG | - | chr7.1:2809848-2809867 | MS.gene050862:CDS | 45.0% | |
| TCATCAAAACCAAGGTCAGC+TGG | + | chr7.1:2809446-2809465 | None:intergenic | 45.0% | |
| TCATGAAGACAAGGACGCAA+GGG | - | chr7.1:2809361-2809380 | MS.gene050862:intron | 45.0% | |
| TGATGAACCAAGACTCGAGA+GGG | - | chr7.1:2809571-2809590 | MS.gene050862:CDS | 45.0% | |
| TGCCCTTGTAAAAGCCACAA+TGG | + | chr7.1:2809825-2809844 | None:intergenic | 45.0% | |
| TGTGAAGGGTCATGAAGACA+AGG | - | chr7.1:2809352-2809371 | MS.gene050862:intron | 45.0% | |
| TTGATGAACCAAGACTCGAG+AGG | - | chr7.1:2809570-2809589 | MS.gene050862:CDS | 45.0% | |
| !! | GTGCCATTGTGGCTTTTACA+AGG | - | chr7.1:2809819-2809838 | MS.gene050862:CDS | 45.0% |
| AAGATAGCAGTGGTGACTGG+AGG | - | chr7.1:2809260-2809279 | MS.gene050862:CDS | 50.0% | |
| AGGTCAGCTGGTATAGCCAT+TGG | + | chr7.1:2809434-2809453 | None:intergenic | 50.0% | |
| ATGGCTATACCAGCTGACCT+TGG | - | chr7.1:2809434-2809453 | MS.gene050862:CDS | 50.0% | |
| CTAAACACCCTCTCGAGTCT+TGG | + | chr7.1:2809581-2809600 | None:intergenic | 50.0% | |
| GGAAAGATAGCAGTGGTGAC+TGG | - | chr7.1:2809257-2809276 | MS.gene050862:CDS | 50.0% | |
| GTATATCACCGTTAGGGTGG+AGG | + | chr7.1:2810063-2810082 | None:intergenic | 50.0% | |
| GTCATGAAGACAAGGACGCA+AGG | - | chr7.1:2809360-2809379 | MS.gene050862:intron | 50.0% | |
| !! | ACTGGAGGTGACTCTGGAAT+AGG | - | chr7.1:2809275-2809294 | MS.gene050862:intron | 50.0% |
| !! | GTCTACTAAGGGTGCCATTG+TGG | - | chr7.1:2809808-2809827 | MS.gene050862:intron | 50.0% |
| AAGGAGGGAGCAACCTCAAC+AGG | + | chr7.1:2809992-2810011 | None:intergenic | 55.0% | |
| AGAGTGAATGGGGTTGCACC+TGG | - | chr7.1:2809875-2809894 | MS.gene050862:CDS | 55.0% | |
| GATGTGCCAATGAAGAGGGC+TGG | - | chr7.1:2809962-2809981 | MS.gene050862:CDS | 55.0% | |
| GCAGCTGAGCAGTATGAGTG+TGG | - | chr7.1:2809533-2809552 | MS.gene050862:CDS | 55.0% | |
| GGGTTGCACCTGGACCTATT+TGG | - | chr7.1:2809885-2809904 | MS.gene050862:CDS | 55.0% | |
| CACCGTTAGGGTGGAGGACT+TGG | + | chr7.1:2810057-2810076 | None:intergenic | 60.0% | |
| GGCCAAGTCCTCCACCCTAA+CGG | - | chr7.1:2810052-2810071 | MS.gene050862:CDS | 60.0% | |
| GGCTGTCCAGCCCTCTTCAT+TGG | + | chr7.1:2809971-2809990 | None:intergenic | 60.0% | |
| GTGGTGACTGGAGGTGACTC+TGG | - | chr7.1:2809269-2809288 | MS.gene050862:intron | 60.0% | |
| GAGGGCTGGACAGCCTGTTG+AGG | - | chr7.1:2809976-2809995 | MS.gene050862:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 2809257 | 2810186 | 2809257 | ID=MS.gene050862 |
| chr7.1 | mRNA | 2809257 | 2810186 | 2809257 | ID=MS.gene050862.t1;Parent=MS.gene050862 |
| chr7.1 | exon | 2809810 | 2810186 | 2809810 | ID=MS.gene050862.t1.exon1;Parent=MS.gene050862.t1 |
| chr7.1 | CDS | 2809810 | 2810186 | 2809810 | ID=cds.MS.gene050862.t1;Parent=MS.gene050862.t1 |
| chr7.1 | exon | 2809370 | 2809728 | 2809370 | ID=MS.gene050862.t1.exon2;Parent=MS.gene050862.t1 |
| chr7.1 | CDS | 2809370 | 2809728 | 2809370 | ID=cds.MS.gene050862.t1;Parent=MS.gene050862.t1 |
| chr7.1 | exon | 2809257 | 2809279 | 2809257 | ID=MS.gene050862.t1.exon3;Parent=MS.gene050862.t1 |
| chr7.1 | CDS | 2809257 | 2809279 | 2809257 | ID=cds.MS.gene050862.t1;Parent=MS.gene050862.t1 |
| Gene Sequence |
| Protein sequence |
