AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043387

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043387.t1 MTR_2g090165 95.833 264 11 0 1 264 1 264 0.0 514
MS.gene043387.t1 MTR_7g110130 81.203 266 48 2 1 264 1 266 3.79e-153 427
MS.gene043387.t1 MTR_7g110160 76.923 260 42 2 1 260 1 242 6.34e-139 390
MS.gene043387.t1 MTR_7g110140 68.582 261 81 1 1 261 1 260 8.20e-128 363
MS.gene043387.t1 MTR_6g035395 62.598 254 82 1 3 256 2 242 9.28e-108 312
MS.gene043387.t1 MTR_6g023590 50.598 251 122 2 5 253 12 262 3.11e-85 255
MS.gene043387.t1 MTR_7g071680 50.179 279 115 5 2 259 25 300 1.29e-80 245
MS.gene043387.t1 MTR_6g023910 49.802 253 125 2 2 252 9 261 1.08e-79 241
MS.gene043387.t1 MTR_6g023950 49.802 253 125 2 5 255 12 264 1.53e-79 241
MS.gene043387.t1 MTR_6g023990 47.244 254 132 2 2 253 10 263 3.17e-79 240
MS.gene043387.t1 MTR_6g023610 50.400 250 122 2 5 252 12 261 3.23e-79 240
MS.gene043387.t1 MTR_6g023600 49.004 251 126 2 5 253 12 262 4.88e-78 237
MS.gene043387.t1 MTR_7g105460 48.221 253 129 2 5 256 12 263 6.71e-78 237
MS.gene043387.t1 MTR_4g052320 49.609 256 125 3 2 256 4 256 9.47e-78 236
MS.gene043387.t1 MTR_4g052340 50.394 254 121 4 4 256 12 261 1.79e-77 236
MS.gene043387.t1 MTR_4g052350 50.196 255 122 3 4 257 12 262 3.33e-77 235
MS.gene043387.t1 MTR_4g052300 49.805 257 122 4 2 256 4 255 2.40e-76 233
MS.gene043387.t1 MTR_6g023600 48.207 251 122 3 5 253 12 256 1.19e-73 226
MS.gene043387.t1 MTR_7g107670 45.703 256 131 4 4 253 31 284 2.11e-70 219
MS.gene043387.t1 MTR_7g083870 45.865 266 134 6 4 261 33 296 1.76e-69 216
MS.gene043387.t1 MTR_7g105580 45.594 261 123 4 4 263 6 248 8.31e-64 200
MS.gene043387.t1 MTR_3g020670 44.981 269 137 5 4 263 14 280 1.21e-63 201
MS.gene043387.t1 MTR_4g078630 42.804 271 142 5 1 262 14 280 6.03e-63 199
MS.gene043387.t1 MTR_7g105590 49.206 189 94 2 4 191 6 193 8.59e-54 172
MS.gene043387.t1 MTR_7g105570 48.066 181 92 2 77 256 41 220 5.89e-49 161
MS.gene043387.t1 MTR_3g113870 44.737 190 102 3 14 202 29 216 1.84e-48 160
MS.gene043387.t1 MTR_4g084800 49.640 139 69 1 4 141 11 149 7.65e-40 135
MS.gene043387.t1 MTR_4g058840 30.545 275 153 6 1 251 1 261 3.38e-25 101
MS.gene043387.t1 MTR_4g058820 30.545 275 153 6 1 251 1 261 3.38e-25 101
MS.gene043387.t1 MTR_6g023940 34.328 201 68 4 2 200 9 147 2.58e-24 95.9
MS.gene043387.t1 MTR_4g058810 29.496 278 158 6 1 254 1 264 5.65e-22 92.4
MS.gene043387.t1 MTR_3g085740 27.907 258 165 9 4 252 73 318 2.99e-21 91.3
MS.gene043387.t1 MTR_4g131740 28.626 262 161 8 5 251 39 289 8.88e-21 89.7
MS.gene043387.t1 MTR_4g132850 28.968 252 168 5 4 252 5 248 1.91e-20 87.8
MS.gene043387.t1 MTR_1g051165 27.757 263 176 5 4 254 12 272 1.95e-19 85.9
MS.gene043387.t1 MTR_7g113650 27.444 266 167 8 5 256 39 292 2.83e-19 85.5
MS.gene043387.t1 MTR_1196s0010 32.411 253 150 9 7 252 275 513 3.61e-19 87.0
MS.gene043387.t1 MTR_1g082760 27.239 268 165 9 5 256 39 292 4.06e-19 85.1
MS.gene043387.t1 MTR_4g064887 27.612 268 170 8 2 259 11 264 7.61e-19 84.0
MS.gene043387.t1 MTR_3g068175 29.259 270 174 9 1 263 12 271 1.63e-16 77.4
MS.gene043387.t1 MTR_3g068070 26.357 258 178 7 2 254 11 261 5.39e-16 75.9
MS.gene043387.t1 MTR_3g068065 26.877 253 173 7 6 253 17 262 9.73e-16 75.5
MS.gene043387.t1 MTR_4g064887 29.851 201 128 5 2 195 11 205 1.13e-15 74.3
MS.gene043387.t1 MTR_3g068085 27.341 267 173 8 6 263 15 269 1.22e-15 75.1
MS.gene043387.t1 MTR_3g068155 29.183 257 172 9 3 255 16 266 1.80e-15 74.7
MS.gene043387.t1 MTR_7g105560 60.714 56 22 0 4 59 11 66 9.13e-15 70.1
MS.gene043387.t1 MTR_8g442750 28.731 268 171 10 6 260 14 274 1.17e-14 72.8
MS.gene043387.t1 MTR_3g068175 28.832 274 174 10 1 263 12 275 2.31e-14 71.6
MS.gene043387.t1 MTR_7g094520 29.730 259 160 8 6 252 11 259 2.39e-13 68.6
MS.gene043387.t1 MTR_4g058830 31.098 164 99 3 95 251 51 207 2.47e-13 67.8
MS.gene043387.t1 MTR_3g087850 29.000 200 116 6 4 192 24 208 2.62e-13 68.9
MS.gene043387.t1 MTR_8g096580 28.070 228 142 7 4 225 43 254 2.70e-13 68.9
MS.gene043387.t1 MTR_4g097510 27.411 197 135 5 7 200 3 194 2.77e-13 68.6
MS.gene043387.t1 MTR_4g086410 27.586 261 148 7 8 248 6 245 2.80e-13 69.7
MS.gene043387.t1 MTR_3g087860 33.813 139 86 3 56 192 59 193 3.99e-13 68.2
MS.gene043387.t1 MTR_4g086400 28.019 207 127 4 8 197 6 207 1.65e-12 67.4
MS.gene043387.t1 MTR_7g063320 28.958 259 170 9 2 252 11 263 4.67e-12 64.7
MS.gene043387.t1 MTR_7g063360 27.376 263 173 9 2 254 12 266 7.72e-12 64.3
MS.gene043387.t1 MTR_7g063390 25.869 259 182 7 2 254 12 266 8.88e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043387.t1 AT2G47140 60.392 255 101 0 1 255 1 255 2.71e-110 318
MS.gene043387.t1 AT3G29250 58.984 256 105 0 1 256 1 256 9.52e-103 300
MS.gene043387.t1 AT3G29250 58.984 256 105 0 1 256 37 292 2.50e-102 300
MS.gene043387.t1 AT2G47130 58.301 259 101 2 1 256 1 255 2.89e-102 298
MS.gene043387.t1 AT3G29250 58.661 254 105 0 3 256 41 294 1.66e-101 298
MS.gene043387.t1 AT2G47120 56.538 260 103 4 1 256 1 254 3.79e-100 293
MS.gene043387.t1 AT3G29260 57.529 259 103 2 1 256 1 255 1.71e-99 291
MS.gene043387.t1 AT2G47120 56.641 256 101 4 5 256 6 255 3.33e-99 291
MS.gene043387.t1 AT3G51680 48.162 272 125 3 4 259 30 301 7.87e-76 233
MS.gene043387.t1 AT3G26770 43.284 268 140 5 4 261 39 304 3.46e-64 203
MS.gene043387.t1 AT4G03140 43.411 258 138 4 4 255 76 331 5.04e-62 199
MS.gene043387.t1 AT1G52340 45.693 267 127 6 4 256 16 278 1.57e-61 196
MS.gene043387.t1 AT3G26760 39.259 270 152 5 2 261 32 299 8.57e-60 192
MS.gene043387.t1 AT3G42960 45.211 261 131 5 2 253 4 261 3.88e-54 176
MS.gene043387.t1 AT2G47150 37.052 251 105 7 6 256 1 198 2.74e-37 130
MS.gene043387.t1 AT1G07450 30.268 261 165 8 1 254 3 253 3.76e-22 92.8
MS.gene043387.t1 AT3G55290 28.682 258 165 4 6 251 17 267 9.54e-22 92.0
MS.gene043387.t1 AT3G55290 28.682 258 165 4 6 251 18 268 1.04e-21 92.0
MS.gene043387.t1 AT2G29340 30.534 262 160 9 3 254 4 253 4.91e-21 89.7
MS.gene043387.t1 AT2G29340 30.534 262 160 9 3 254 4 253 6.94e-21 90.1
MS.gene043387.t1 AT2G29310 29.924 264 159 9 3 254 4 253 9.55e-21 89.0
MS.gene043387.t1 AT1G62610 28.185 259 166 5 6 251 14 265 6.53e-20 87.0
MS.gene043387.t1 AT1G62610 28.185 259 166 5 6 251 15 266 6.83e-20 87.0
MS.gene043387.t1 AT1G62610 28.185 259 166 5 6 251 19 270 6.96e-20 87.0
MS.gene043387.t1 AT1G62610 28.185 259 166 5 6 251 13 264 7.95e-20 86.7
MS.gene043387.t1 AT2G29150 30.739 257 167 8 2 254 12 261 8.70e-20 86.7
MS.gene043387.t1 AT4G05530 32.411 253 158 7 4 252 7 250 1.29e-19 85.9
MS.gene043387.t1 AT3G55310 28.947 266 154 6 6 251 17 267 1.87e-19 85.9
MS.gene043387.t1 AT3G46170 28.077 260 164 7 6 251 26 276 7.80e-19 84.3
MS.gene043387.t1 AT1G63380 28.137 263 167 7 6 254 15 269 8.37e-19 84.0
MS.gene043387.t1 AT1G63380 28.137 263 167 7 6 254 17 271 9.24e-19 84.0
MS.gene043387.t1 AT1G63380 28.137 263 167 7 6 254 22 276 1.02e-18 84.0
MS.gene043387.t1 AT1G63380 28.137 263 167 7 6 254 19 273 1.09e-18 83.6
MS.gene043387.t1 AT2G29290 29.688 256 170 7 3 254 4 253 1.12e-18 83.2
MS.gene043387.t1 AT5G06060 31.679 262 157 10 3 254 6 255 1.13e-18 83.2
MS.gene043387.t1 AT2G17845 28.464 267 165 8 6 255 47 304 2.14e-18 83.2
MS.gene043387.t1 AT2G30670 27.907 258 172 6 3 254 4 253 3.08e-18 82.0
MS.gene043387.t1 AT1G07440 28.627 255 173 7 3 254 9 257 4.08e-18 82.0
MS.gene043387.t1 AT1G24360 25.969 258 174 8 4 254 72 319 1.03e-17 81.6
MS.gene043387.t1 AT2G29370 29.588 267 168 10 3 260 13 268 1.49e-17 80.5
MS.gene043387.t1 AT2G29350 28.405 257 173 8 2 254 11 260 3.41e-17 79.3
MS.gene043387.t1 AT2G29360 29.231 260 166 10 3 254 13 262 8.04e-17 78.6
MS.gene043387.t1 AT2G29340 31.658 199 125 7 3 195 4 197 1.48e-16 76.3
MS.gene043387.t1 AT2G29340 31.658 199 125 7 3 195 4 197 1.48e-16 76.3
MS.gene043387.t1 AT2G29290 29.500 200 135 4 56 254 42 236 3.78e-16 76.3
MS.gene043387.t1 AT1G54870 25.843 267 170 8 5 256 83 336 4.08e-16 77.4
MS.gene043387.t1 AT1G54870 25.843 267 170 8 5 256 81 334 4.51e-16 77.0
MS.gene043387.t1 AT2G29300 28.409 264 174 8 3 259 4 259 7.49e-16 75.9
MS.gene043387.t1 AT2G29300 29.344 259 168 9 3 254 4 254 9.49e-16 75.1
MS.gene043387.t1 AT2G29260 30.534 262 164 10 2 254 62 314 1.37e-15 75.5
MS.gene043387.t1 AT2G29320 30.078 256 164 9 6 254 13 260 9.99e-15 72.4
MS.gene043387.t1 AT2G29310 30.348 201 125 7 3 195 4 197 1.04e-14 71.2
MS.gene043387.t1 AT4G13180 31.923 260 157 9 6 254 13 263 1.73e-14 71.6
MS.gene043387.t1 AT2G29330 27.344 256 176 6 3 254 4 253 3.17e-14 70.9
MS.gene043387.t1 AT3G05260 25.843 267 166 7 5 254 36 287 4.12e-14 70.9
MS.gene043387.t1 AT3G12800 29.044 272 168 12 6 261 10 272 4.65e-14 70.9
MS.gene043387.t1 AT1G10310 34.091 132 85 2 63 194 73 202 5.69e-14 70.1
MS.gene043387.t1 AT2G29350 27.500 200 138 5 56 254 29 222 6.20e-14 69.7
MS.gene043387.t1 AT1G49670 30.288 208 117 5 8 195 6 205 7.19e-14 71.6
MS.gene043387.t1 AT1G49670 30.288 208 117 5 8 195 6 205 8.32e-14 71.2
MS.gene043387.t1 AT2G29310 28.085 235 143 9 32 254 31 251 1.85e-13 68.9
MS.gene043387.t1 AT2G29350 29.798 198 132 6 2 195 11 205 2.07e-13 68.2
MS.gene043387.t1 AT5G50770 29.319 191 127 5 1 187 40 226 6.41e-13 68.2
MS.gene043387.t1 AT5G18210 28.137 263 170 8 2 252 4 259 5.21e-11 62.0

Find 51 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAAAACATGGTCTTAT+AGG 0.276120 2.2:-9807502 MS.gene043387:CDS
TGCAGTGAGCTTGGAGCTTA+TGG 0.278067 2.2:-9807463 MS.gene043387:CDS
AGCAGATATCAATGATGAAT+TGG 0.283540 2.2:-9807866 MS.gene043387:CDS
TGGTGTTGTCAAATTCATTT+AGG 0.283555 2.2:+9807665 None:intergenic
CATCATCTTGCAAATTCAAT+AGG 0.295890 2.2:-9807841 MS.gene043387:CDS
CCTTGATTATGCTAATTTGC+AGG 0.303341 2.2:-9807347 MS.gene043387:CDS
GTAAAGATATTCGTGGAAAA+TGG 0.310172 2.2:-9807904 MS.gene043387:CDS
GATGAATCTGCTTATATTAG+TGG 0.356858 2.2:-9807271 MS.gene043387:CDS
ATGGTCTTATAGGCCTTGTT+AGG 0.368865 2.2:-9807492 MS.gene043387:CDS
GCTTTCACGTTGGAGAGATA+TGG 0.399630 2.2:-9807754 MS.gene043387:CDS
ACTGGGGCAGCAAGCGGAAT+AGG 0.399759 2.2:-9807937 MS.gene043387:CDS
ATTGCTGAACATGATGTCTA+AGG 0.424678 2.2:+9807729 None:intergenic
ATCATCTTGCAAATTCAATA+GGG 0.425897 2.2:-9807840 MS.gene043387:CDS
ATTTGCACTGCCAGTGTAGC+TGG 0.426549 2.2:-9807559 MS.gene043387:CDS
TGATCATAGGTTGGAGGGTA+AGG 0.428592 2.2:-9807971 MS.gene043387:intron
AATTCTAGTATGCTAGATAA+AGG 0.435820 2.2:+9807691 None:intergenic
TTATATTAGTGGACATAACT+TGG 0.444616 2.2:-9807260 MS.gene043387:CDS
GACATCATGTTCAGCAATGC+TGG 0.459929 2.2:-9807724 MS.gene043387:CDS
GCAGATATCAATGATGAATT+GGG 0.463215 2.2:-9807865 MS.gene043387:CDS
GTGGCTTCTCAGTCATTAAT+CGG 0.474841 2.2:-9807228 MS.gene043387:CDS
TTCAGCAATGCTGGTAATGC+TGG 0.487409 2.2:-9807715 MS.gene043387:CDS
TTTGCAGGGAATTACATTGA+AGG 0.494365 2.2:-9807332 MS.gene043387:CDS
GGACATAACTTGGTCGTTGA+TGG 0.497040 2.2:-9807250 MS.gene043387:CDS
AGAGGTGTAGCAACAGCATA+AGG 0.501265 2.2:+9807418 None:intergenic
GGTAAGGTAGCTATAGTGAC+TGG 0.506112 2.2:-9807955 MS.gene043387:CDS
CACTGCATGTTGACCTAACA+AGG 0.507555 2.2:+9807479 None:intergenic
CTTGATTATGCTAATTTGCA+GGG 0.512554 2.2:-9807346 MS.gene043387:CDS
AGGTCAACATGCAGTGAGCT+TGG 0.516394 2.2:-9807472 MS.gene043387:CDS
CCTGCAAATTAGCATAATCA+AGG 0.541425 2.2:+9807347 None:intergenic
ACCAACAAAACCAGCTACAC+TGG 0.550665 2.2:+9807549 None:intergenic
CAAGCATGCTGCACATGTAA+TGG 0.551599 2.2:-9807608 MS.gene043387:CDS
ACCATGGCTGTGAACGTTCG+TGG 0.565494 2.2:-9807646 MS.gene043387:CDS
CCGAGTGAAGTCGAAGCTGT+TGG 0.568288 2.2:-9807370 MS.gene043387:CDS
ACCACGAACGTTCACAGCCA+TGG 0.577592 2.2:+9807645 None:intergenic
AGAAGCAGTAAAGATATTCG+TGG 0.578218 2.2:-9807911 MS.gene043387:CDS
GTAAGGTAGCTATAGTGACT+GGG 0.582532 2.2:-9807954 MS.gene043387:CDS
ACCTCTTGCATGTAGAACAC+TGG 0.593778 2.2:-9807401 MS.gene043387:CDS
ATAGTGACTGGGGCAGCAAG+CGG 0.610587 2.2:-9807943 MS.gene043387:CDS
TCCAGTGTTCTACATGCAAG+AGG 0.610800 2.2:+9807400 None:intergenic
CATAACTTGGTCGTTGATGG+TGG 0.616743 2.2:-9807247 MS.gene043387:CDS
GGAAATTGTTGCTTTCACGT+TGG 0.626510 2.2:-9807764 MS.gene043387:CDS
CCAACAGCTTCGACTTCACT+CGG 0.628321 2.2:+9807370 None:intergenic
AATCGTCAATGTCAAAACAA+AGG 0.629421 2.2:-9808103 None:intergenic
GAGAGATGAGAAACAAGTTG+AGG 0.635217 2.2:-9807785 MS.gene043387:CDS
TGCATGTAGAACACTGGACA+TGG 0.637622 2.2:-9807395 MS.gene043387:CDS
GATTATACAGCATCAAAACA+TGG 0.649473 2.2:-9807511 MS.gene043387:CDS
CATCTCTCACGTCACAGTGG+TGG 0.650693 2.2:+9807800 None:intergenic
GCATGCTGCACATGTAATGG+TGG 0.670534 2.2:-9807605 MS.gene043387:CDS
AAATGAATTTGACAACACCA+TGG 0.674818 2.2:-9807662 MS.gene043387:CDS
TCTCATCTCTCACGTCACAG+TGG 0.689905 2.2:+9807797 None:intergenic
TAAGGTAGCTATAGTGACTG+GGG 0.695873 2.2:-9807953 MS.gene043387:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTTTATGATCAT+AGG - chr2.2:9807315-9807334 MS.gene043387:CDS 10.0%
!!! TTTATTTTATGATCATAGGT+TGG - chr2.2:9807319-9807338 MS.gene043387:CDS 20.0%
! AATTCTAGTATGCTAGATAA+AGG + chr2.2:9807611-9807630 None:intergenic 25.0%
! ATCATCTTGCAAATTCAATA+GGG - chr2.2:9807459-9807478 MS.gene043387:CDS 25.0%
! TGTTATAAGCCAATAGAAAT+AGG + chr2.2:9807278-9807297 None:intergenic 25.0%
!! TTATATTAGTGGACATAACT+TGG - chr2.2:9808039-9808058 MS.gene043387:intron 25.0%
AAATGAATTTGACAACACCA+TGG - chr2.2:9807637-9807656 MS.gene043387:CDS 30.0%
AGCAGATATCAATGATGAAT+TGG - chr2.2:9807433-9807452 MS.gene043387:CDS 30.0%
CATCATCTTGCAAATTCAAT+AGG - chr2.2:9807458-9807477 MS.gene043387:CDS 30.0%
GATGAATCTGCTTATATTAG+TGG - chr2.2:9808028-9808047 MS.gene043387:intron 30.0%
GATTATACAGCATCAAAACA+TGG - chr2.2:9807788-9807807 MS.gene043387:CDS 30.0%
GCAGATATCAATGATGAATT+GGG - chr2.2:9807434-9807453 MS.gene043387:CDS 30.0%
GTAAAGATATTCGTGGAAAA+TGG - chr2.2:9807395-9807414 MS.gene043387:CDS 30.0%
! CTTGATTATGCTAATTTGCA+GGG - chr2.2:9807953-9807972 MS.gene043387:CDS 30.0%
!! ATTTTATGATCATAGGTTGG+AGG - chr2.2:9807322-9807341 MS.gene043387:CDS 30.0%
!! TGGTGTTGTCAAATTCATTT+AGG + chr2.2:9807637-9807656 None:intergenic 30.0%
!! TTTTATGATCATAGGTTGGA+GGG - chr2.2:9807323-9807342 MS.gene043387:CDS 30.0%
AGAAGCAGTAAAGATATTCG+TGG - chr2.2:9807388-9807407 MS.gene043387:CDS 35.0%
ATTGCTGAACATGATGTCTA+AGG + chr2.2:9807573-9807592 None:intergenic 35.0%
CCTGCAAATTAGCATAATCA+AGG + chr2.2:9807955-9807974 None:intergenic 35.0%
TTTGCAGGGAATTACATTGA+AGG - chr2.2:9807967-9807986 MS.gene043387:intron 35.0%
! ATGGTGGAAAGAAAAATACG+TGG - chr2.2:9807710-9807729 MS.gene043387:CDS 35.0%
! CCTTGATTATGCTAATTTGC+AGG - chr2.2:9807952-9807971 MS.gene043387:CDS 35.0%
!! CAGTGTCTACCTATTTCTAT+TGG - chr2.2:9807266-9807285 MS.gene043387:CDS 35.0%
!! GCATCAAAACATGGTCTTAT+AGG - chr2.2:9807797-9807816 MS.gene043387:CDS 35.0%
ACACTGTACTAGCTAGAAAG+AGG + chr2.2:9807252-9807271 None:intergenic 40.0%
CACTGTACTAGCTAGAAAGA+GGG + chr2.2:9807251-9807270 None:intergenic 40.0%
GAGAGATGAGAAACAAGTTG+AGG - chr2.2:9807514-9807533 MS.gene043387:CDS 40.0%
GTAAGGTAGCTATAGTGACT+GGG - chr2.2:9807345-9807364 MS.gene043387:CDS 40.0%
GTGGCTTCTCAGTCATTAAT+CGG - chr2.2:9808071-9808090 MS.gene043387:intron 40.0%
TAAGGTAGCTATAGTGACTG+GGG - chr2.2:9807346-9807365 MS.gene043387:CDS 40.0%
!! ATGGTCTTATAGGCCTTGTT+AGG - chr2.2:9807807-9807826 MS.gene043387:CDS 40.0%
!! GGAAATTGTTGCTTTCACGT+TGG - chr2.2:9807535-9807554 MS.gene043387:CDS 40.0%
ACCAACAAAACCAGCTACAC+TGG + chr2.2:9807753-9807772 None:intergenic 45.0%
ACCTCTTGCATGTAGAACAC+TGG - chr2.2:9807898-9807917 MS.gene043387:CDS 45.0%
CAAGCATGCTGCACATGTAA+TGG - chr2.2:9807691-9807710 MS.gene043387:CDS 45.0%
CACTGCATGTTGACCTAACA+AGG + chr2.2:9807823-9807842 None:intergenic 45.0%
GACATCATGTTCAGCAATGC+TGG - chr2.2:9807575-9807594 MS.gene043387:CDS 45.0%
GCTTTCACGTTGGAGAGATA+TGG - chr2.2:9807545-9807564 MS.gene043387:CDS 45.0%
GGACATAACTTGGTCGTTGA+TGG - chr2.2:9808049-9808068 MS.gene043387:intron 45.0%
GGTAAGGTAGCTATAGTGAC+TGG - chr2.2:9807344-9807363 MS.gene043387:CDS 45.0%
TCCAGTGTTCTACATGCAAG+AGG + chr2.2:9807902-9807921 None:intergenic 45.0%
TGCATGTAGAACACTGGACA+TGG - chr2.2:9807904-9807923 MS.gene043387:CDS 45.0%
! AGAGGTGTAGCAACAGCATA+AGG + chr2.2:9807884-9807903 None:intergenic 45.0%
! CATAACTTGGTCGTTGATGG+TGG - chr2.2:9808052-9808071 MS.gene043387:intron 45.0%
! TGATCATAGGTTGGAGGGTA+AGG - chr2.2:9807328-9807347 MS.gene043387:CDS 45.0%
! TTCAGCAATGCTGGTAATGC+TGG - chr2.2:9807584-9807603 MS.gene043387:CDS 45.0%
!!! AGTGTAGCTGGTTTTGTTGG+TGG - chr2.2:9807752-9807771 MS.gene043387:CDS 45.0%
AGGTCAACATGCAGTGAGCT+TGG - chr2.2:9807827-9807846 MS.gene043387:CDS 50.0%
ATTTGCACTGCCAGTGTAGC+TGG - chr2.2:9807740-9807759 MS.gene043387:CDS 50.0%
CCAACAGCTTCGACTTCACT+CGG + chr2.2:9807932-9807951 None:intergenic 50.0%
GCATGCTGCACATGTAATGG+TGG - chr2.2:9807694-9807713 MS.gene043387:CDS 50.0%
TCTCATCTCTCACGTCACAG+TGG + chr2.2:9807505-9807524 None:intergenic 50.0%
TGCAGTGAGCTTGGAGCTTA+TGG - chr2.2:9807836-9807855 MS.gene043387:CDS 50.0%
!!! GCCAGTGTAGCTGGTTTTGT+TGG - chr2.2:9807749-9807768 MS.gene043387:CDS 50.0%
!!! GGTTTTGTTGGTGGATGTGC+AGG - chr2.2:9807761-9807780 MS.gene043387:CDS 50.0%
ACCACGAACGTTCACAGCCA+TGG + chr2.2:9807657-9807676 None:intergenic 55.0%
ACCATGGCTGTGAACGTTCG+TGG - chr2.2:9807653-9807672 MS.gene043387:CDS 55.0%
ATAGTGACTGGGGCAGCAAG+CGG - chr2.2:9807356-9807375 MS.gene043387:CDS 55.0%
CATCTCTCACGTCACAGTGG+TGG + chr2.2:9807502-9807521 None:intergenic 55.0%
CCGAGTGAAGTCGAAGCTGT+TGG - chr2.2:9807929-9807948 MS.gene043387:CDS 55.0%
ACTGGGGCAGCAAGCGGAAT+AGG - chr2.2:9807362-9807381 MS.gene043387:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 9807204 9808117 9807204 ID=MS.gene043387
chr2.2 mRNA 9807204 9808117 9807204 ID=MS.gene043387.t1;Parent=MS.gene043387
chr2.2 exon 9808104 9808117 9808104 ID=MS.gene043387.t1.exon1;Parent=MS.gene043387.t1
chr2.2 CDS 9808104 9808117 9808104 ID=cds.MS.gene043387.t1;Parent=MS.gene043387.t1
chr2.2 exon 9807204 9807984 9807204 ID=MS.gene043387.t1.exon2;Parent=MS.gene043387.t1
chr2.2 CDS 9807204 9807984 9807204 ID=cds.MS.gene043387.t1;Parent=MS.gene043387.t1
Gene Sequence

>MS.gene043387

ATGTCAAAACAAAGGTACGTATAACTTTGTATATTTATGAATCTCCCTCTTTCTAGCTAGTACAGTGTCTACCTATTTCTATTGGCTTATAACAACAAATTAATGAATAGTATATTTTATTTTATGATCATAGGTTGGAGGGTAAGGTAGCTATAGTGACTGGGGCAGCAAGCGGAATAGGAGCAGAAGCAGTAAAGATATTCGTGGAAAATGGAGCATTTGTAGTCATAGCAGATATCAATGATGAATTGGGTCATCATCTTGCAAATTCAATAGGGTTAGACAAAGTGAGTTACCACCACTGTGACGTGAGAGATGAGAAACAAGTTGAGGAAATTGTTGCTTTCACGTTGGAGAGATATGGTACCTTAGACATCATGTTCAGCAATGCTGGTAATGCTGGTCCTTTATCTAGCATACTAGAATTTGACCTAAATGAATTTGACAACACCATGGCTGTGAACGTTCGTGGTGCAGCTGCAACTATCAAGCATGCTGCACATGTAATGGTGGAAAGAAAAATACGTGGATCAATAATTTGCACTGCCAGTGTAGCTGGTTTTGTTGGTGGATGTGCAGGACATGATTATACAGCATCAAAACATGGTCTTATAGGCCTTGTTAGGTCAACATGCAGTGAGCTTGGAGCTTATGGAATCAGAGTCAATTCAATCTCACCTTATGCTGTTGCTACACCTCTTGCATGTAGAACACTGGACATGGTGCCGAGTGAAGTCGAAGCTGTTGGCCTTGATTATGCTAATTTGCAGGGAATTACATTGAAGGCTGCTCATATTGCAGAGACTGCTTTGTTTCTTGCATCTGATGAATCTGCTTATATTAGTGGACATAACTTGGTCGTTGATGGTGGCTTCTCAGTCATTAATCGGTGTCTTCCTAGTATTAAAAAATGA
Protein sequence

>MS.gene043387.t1

MSKQRLEGKVAIVTGAASGIGAEAVKIFVENGAFVVIADINDELGHHLANSIGLDKVSYHHCDVRDEKQVEEIVAFTLERYGTLDIMFSNAGNAGPLSSILEFDLNEFDNTMAVNVRGAAATIKHAAHVMVERKIRGSIICTASVAGFVGGCAGHDYTASKHGLIGLVRSTCSELGAYGIRVNSISPYAVATPLACRTLDMVPSEVEAVGLDYANLQGITLKAAHIAETALFLASDESAYISGHNLVVDGGFSVINRCLPSIKK