AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03319

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03319.t1 MTR_6g035395 88.123 261 18 1 2 262 1 248 5.04e-162 449
MS.gene03319.t1 MTR_7g110140 77.432 257 58 0 1 257 1 257 4.85e-145 407
MS.gene03319.t1 MTR_7g110130 68.992 258 79 1 1 257 1 258 2.14e-125 357
MS.gene03319.t1 MTR_2g090165 66.926 257 85 0 1 257 1 257 2.95e-124 354
MS.gene03319.t1 MTR_7g110160 62.257 257 79 1 1 257 1 239 1.14e-107 311
MS.gene03319.t1 MTR_6g023590 51.394 251 120 2 5 253 12 262 2.51e-85 255
MS.gene03319.t1 MTR_6g023950 50.988 253 122 2 5 255 12 264 4.77e-81 244
MS.gene03319.t1 MTR_4g052350 52.157 255 117 3 4 257 12 262 2.68e-80 243
MS.gene03319.t1 MTR_4g052340 50.588 255 121 3 4 257 12 262 2.01e-79 241
MS.gene03319.t1 MTR_6g023610 50.400 250 122 2 5 252 12 261 2.01e-79 241
MS.gene03319.t1 MTR_6g023990 50.199 251 123 2 5 253 13 263 2.06e-79 240
MS.gene03319.t1 MTR_6g023910 51.200 250 120 2 5 252 12 261 5.30e-79 239
MS.gene03319.t1 MTR_6g023600 50.996 251 121 2 5 253 12 262 1.09e-78 238
MS.gene03319.t1 MTR_7g071680 48.175 274 120 4 4 257 27 298 4.79e-77 236
MS.gene03319.t1 MTR_4g052320 50.787 254 121 3 5 257 7 257 8.48e-77 234
MS.gene03319.t1 MTR_4g052300 50.394 254 121 3 5 257 7 256 2.61e-75 230
MS.gene03319.t1 MTR_7g105460 47.431 253 131 2 5 256 12 263 3.29e-74 228
MS.gene03319.t1 MTR_6g023600 50.199 251 117 3 5 253 12 256 1.35e-73 225
MS.gene03319.t1 MTR_7g083870 47.893 261 127 5 4 257 33 291 5.66e-70 218
MS.gene03319.t1 MTR_7g107670 45.247 263 134 6 4 259 31 290 2.36e-69 216
MS.gene03319.t1 MTR_7g105580 45.059 253 121 3 4 256 6 240 3.86e-63 199
MS.gene03319.t1 MTR_4g078630 42.697 267 142 5 4 262 17 280 4.00e-62 197
MS.gene03319.t1 MTR_3g020670 46.038 265 133 5 4 259 14 277 1.25e-60 193
MS.gene03319.t1 MTR_7g105590 47.568 185 95 2 4 187 6 189 6.45e-53 170
MS.gene03319.t1 MTR_3g113870 42.308 182 102 3 14 194 29 208 3.86e-44 149
MS.gene03319.t1 MTR_7g105570 36.905 252 106 3 6 256 21 220 1.42e-42 145
MS.gene03319.t1 MTR_4g084800 49.618 131 65 1 2 131 9 139 6.37e-39 133
MS.gene03319.t1 MTR_1g051165 26.236 263 180 6 4 254 12 272 2.10e-21 90.9
MS.gene03319.t1 MTR_4g058840 28.517 263 159 7 6 251 11 261 2.34e-21 90.9
MS.gene03319.t1 MTR_4g058820 28.517 263 159 7 6 251 11 261 2.34e-21 90.9
MS.gene03319.t1 MTR_3g085740 29.688 256 163 8 4 252 73 318 2.64e-21 91.3
MS.gene03319.t1 MTR_8g442750 31.298 262 155 10 6 252 14 265 5.46e-19 84.7
MS.gene03319.t1 MTR_4g132850 29.134 254 169 7 2 252 3 248 8.50e-18 80.5
MS.gene03319.t1 MTR_4g058810 27.170 265 166 8 6 254 11 264 4.34e-17 79.0
MS.gene03319.t1 MTR_7g113650 28.405 257 167 6 5 251 39 288 1.01e-16 78.2
MS.gene03319.t1 MTR_4g097510 30.769 182 122 4 7 187 3 181 2.00e-16 77.4
MS.gene03319.t1 MTR_1g082760 27.444 266 158 7 5 251 39 288 2.39e-16 77.4
MS.gene03319.t1 MTR_2g022600 31.858 226 137 7 12 231 39 253 6.36e-16 77.0
MS.gene03319.t1 MTR_7g105560 58.621 58 24 0 2 59 9 66 1.43e-15 72.4
MS.gene03319.t1 MTR_4g064887 25.969 258 177 7 3 254 12 261 2.35e-15 74.3
MS.gene03319.t1 MTR_4g131740 25.954 262 168 8 5 251 39 289 3.94e-15 73.9
MS.gene03319.t1 MTR_1196s0010 31.496 254 151 9 7 252 275 513 1.08e-14 73.6
MS.gene03319.t1 MTR_3g068085 28.571 252 172 8 6 254 15 261 2.39e-14 71.2
MS.gene03319.t1 MTR_4g086400 24.706 255 157 7 11 248 9 245 7.47e-14 71.2
MS.gene03319.t1 MTR_8g096580 30.612 196 129 4 4 195 43 235 9.75e-14 70.1
MS.gene03319.t1 MTR_3g087850 30.556 180 117 5 10 187 30 203 1.23e-13 69.7
MS.gene03319.t1 MTR_3g068070 26.996 263 168 8 3 254 12 261 1.48e-13 68.9
MS.gene03319.t1 MTR_7g094520 28.346 254 170 7 6 252 11 259 1.55e-13 68.9
MS.gene03319.t1 MTR_7g063390 28.077 260 173 8 3 254 13 266 2.64e-12 65.5
MS.gene03319.t1 MTR_3g087860 33.835 133 84 3 56 187 59 188 1.39e-11 63.5
MS.gene03319.t1 MTR_7g063320 28.405 257 172 9 3 252 12 263 1.40e-11 63.5
MS.gene03319.t1 MTR_7g094510 25.856 263 175 8 1 252 1 254 1.63e-11 63.2
MS.gene03319.t1 MTR_3g068155 28.682 258 170 10 3 254 16 265 2.46e-11 62.8
MS.gene03319.t1 MTR_4g066050 28.889 180 108 5 9 175 27 199 5.51e-11 61.6
MS.gene03319.t1 MTR_4g086410 23.922 255 159 7 11 248 9 245 5.63e-11 62.8
MS.gene03319.t1 MTR_1g007800 29.050 179 119 4 82 256 84 258 5.69e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03319.t1 AT2G47140 61.176 255 99 0 1 255 1 255 1.79e-112 324
MS.gene03319.t1 AT3G29250 61.569 255 98 0 1 255 1 255 9.71e-107 310
MS.gene03319.t1 AT3G29250 61.417 254 98 0 2 255 40 293 2.17e-106 310
MS.gene03319.t1 AT3G29250 61.569 255 98 0 1 255 37 291 4.50e-106 309
MS.gene03319.t1 AT3G29260 58.824 255 104 1 1 255 1 254 2.01e-101 296
MS.gene03319.t1 AT2G47130 57.364 258 109 1 1 258 1 257 4.82e-100 293
MS.gene03319.t1 AT2G47120 56.574 251 107 2 5 255 6 254 1.11e-96 284
MS.gene03319.t1 AT2G47120 56.078 255 110 2 1 255 1 253 1.45e-96 284
MS.gene03319.t1 AT3G51680 47.619 273 127 3 1 257 27 299 7.90e-75 230
MS.gene03319.t1 AT1G52340 45.896 268 132 6 4 259 16 282 8.46e-65 204
MS.gene03319.t1 AT3G26760 41.288 264 144 4 4 258 34 295 4.67e-63 200
MS.gene03319.t1 AT4G03140 42.912 261 141 5 4 258 76 334 5.28e-63 201
MS.gene03319.t1 AT3G26770 40.856 257 143 4 4 253 39 293 1.92e-60 193
MS.gene03319.t1 AT3G42960 43.243 259 135 4 4 253 6 261 5.53e-54 176
MS.gene03319.t1 AT2G47150 37.945 253 104 6 6 258 1 200 1.13e-39 137
MS.gene03319.t1 AT4G05530 31.225 253 165 5 2 252 5 250 4.01e-18 81.6
MS.gene03319.t1 AT2G17845 28.676 272 158 10 6 255 47 304 4.05e-18 82.4
MS.gene03319.t1 AT3G12800 30.153 262 163 9 6 254 10 264 6.62e-17 79.0
MS.gene03319.t1 AT2G29150 31.679 262 156 11 3 254 13 261 7.45e-17 78.6
MS.gene03319.t1 AT2G30670 28.906 256 172 7 3 254 4 253 9.18e-17 78.2
MS.gene03319.t1 AT3G55290 28.090 267 161 8 6 254 18 271 1.52e-16 77.8
MS.gene03319.t1 AT3G55290 28.090 267 161 8 6 254 17 270 1.63e-16 77.8
MS.gene03319.t1 AT2G29340 29.020 255 173 6 3 254 4 253 2.28e-16 77.0
MS.gene03319.t1 AT2G29340 29.020 255 173 6 3 254 4 253 3.30e-16 77.0
MS.gene03319.t1 AT1G07440 28.794 257 170 8 3 254 9 257 5.20e-16 75.9
MS.gene03319.t1 AT1G63380 27.341 267 164 9 6 254 22 276 5.55e-16 76.3
MS.gene03319.t1 AT1G63380 27.341 267 164 9 6 254 17 271 5.56e-16 76.3
MS.gene03319.t1 AT1G63380 27.341 267 164 9 6 254 19 273 5.63e-16 76.3
MS.gene03319.t1 AT1G63380 27.341 267 164 9 6 254 15 269 6.69e-16 75.9
MS.gene03319.t1 AT2G29310 28.405 257 172 7 3 254 4 253 7.42e-16 75.5
MS.gene03319.t1 AT1G07450 28.794 257 170 8 3 254 5 253 8.82e-16 75.1
MS.gene03319.t1 AT2G29360 30.451 266 155 11 3 254 13 262 9.20e-16 75.5
MS.gene03319.t1 AT2G29290 30.075 266 156 9 3 254 4 253 1.28e-15 74.7
MS.gene03319.t1 AT1G62610 27.027 259 169 7 6 251 14 265 1.76e-15 74.7
MS.gene03319.t1 AT1G62610 27.027 259 169 7 6 251 13 264 1.88e-15 74.7
MS.gene03319.t1 AT1G62610 27.027 259 169 7 6 251 15 266 1.90e-15 74.7
MS.gene03319.t1 AT1G62610 27.027 259 169 7 6 251 19 270 1.93e-15 74.7
MS.gene03319.t1 AT2G29370 30.451 266 155 11 3 254 13 262 1.94e-15 74.3
MS.gene03319.t1 AT3G55310 28.409 264 158 8 6 251 17 267 2.26e-15 74.3
MS.gene03319.t1 AT2G29330 28.794 257 171 8 3 254 4 253 7.26e-15 72.8
MS.gene03319.t1 AT5G06060 28.571 259 169 8 3 254 6 255 1.65e-14 71.6
MS.gene03319.t1 AT3G46170 25.954 262 167 7 6 251 26 276 1.72e-14 72.0
MS.gene03319.t1 AT1G54870 27.586 261 164 7 5 251 83 332 3.15e-14 71.6
MS.gene03319.t1 AT1G54870 27.586 261 164 7 5 251 81 330 3.23e-14 71.6
MS.gene03319.t1 AT1G49670 28.704 216 129 5 11 209 9 216 3.73e-14 72.4
MS.gene03319.t1 AT1G49670 28.704 216 129 5 11 209 9 216 4.11e-14 72.4
MS.gene03319.t1 AT5G18210 30.233 258 163 8 6 252 8 259 5.91e-14 70.1
MS.gene03319.t1 AT1G24360 27.027 259 170 10 4 254 72 319 9.32e-14 70.5
MS.gene03319.t1 AT5G50600 30.000 190 127 4 1 187 40 226 9.49e-14 70.5
MS.gene03319.t1 AT5G50700 30.000 190 127 4 1 187 40 226 9.49e-14 70.5
MS.gene03319.t1 AT5G65205 29.787 188 124 5 7 192 7 188 1.51e-13 69.3
MS.gene03319.t1 AT5G19200 32.075 212 132 5 12 217 41 246 2.05e-13 69.3
MS.gene03319.t1 AT5G10050 28.571 189 125 6 7 192 6 187 5.35e-13 67.8
MS.gene03319.t1 AT3G06060 29.730 222 144 5 2 217 50 265 5.84e-13 68.2
MS.gene03319.t1 AT3G06060 29.730 222 144 5 2 217 33 248 6.51e-13 67.8
MS.gene03319.t1 AT4G13180 30.233 258 164 7 6 254 13 263 8.69e-13 67.0
MS.gene03319.t1 AT2G29290 29.630 216 133 6 42 254 37 236 3.37e-12 65.1
MS.gene03319.t1 AT2G29320 29.588 267 162 10 2 254 6 260 3.92e-12 65.1
MS.gene03319.t1 AT3G05260 25.287 261 175 8 5 254 36 287 4.10e-12 65.5
MS.gene03319.t1 AT1G10310 29.412 170 114 3 9 175 18 184 6.46e-12 64.3
MS.gene03319.t1 AT2G29340 29.082 196 134 4 3 195 4 197 1.09e-11 62.8
MS.gene03319.t1 AT2G29340 29.082 196 134 4 3 195 4 197 1.09e-11 62.8
MS.gene03319.t1 AT5G50770 30.000 190 127 4 1 187 40 226 1.45e-11 63.9
MS.gene03319.t1 AT3G03980 26.718 262 171 7 6 252 14 269 3.92e-11 62.4
MS.gene03319.t1 AT2G29310 28.788 198 132 5 3 195 4 197 4.78e-11 61.2

Find 55 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATCAAAACATGCTCTTT+TGG 0.245464 6.2:+31011997 MS.gene03319:CDS
TTACATCAGTGGTCATAATT+TGG 0.260914 6.2:+31012240 MS.gene03319:CDS
GTGAAGTTGTTCGTCGAAAA+TGG 0.282900 6.2:+31011596 MS.gene03319:CDS
CATCAAGTTGTTTCTTCAAT+AGG 0.284749 6.2:+31011659 MS.gene03319:CDS
TTCTTGAACATTTAGGTTAG+AGG 0.321097 6.2:+31011523 MS.gene03319:intron
TTCAGCAATGCCGGAATATT+AGG 0.326721 6.2:+31011785 MS.gene03319:CDS
GTAGACATTCAAGATGAATT+AGG 0.344204 6.2:+31011635 MS.gene03319:CDS
GTTAATAGTGTTTCCCCTTT+CGG 0.349469 6.2:+31012067 MS.gene03319:CDS
GGAAGCGATCGTAAGTTCTA+AGG 0.349654 6.2:+31012141 MS.gene03319:CDS
TGTAGTGAACTTGGTGGTTA+TGG 0.359732 6.2:+31012037 MS.gene03319:CDS
CGGAATATTAGGCTCTTCAT+TGG 0.389239 6.2:+31011796 MS.gene03319:CDS
CAATGAAGAGCCTAATATTC+CGG 0.395683 6.2:-31011795 None:intergenic
GGTCATAATTTGGTGGTTGA+TGG 0.405463 6.2:+31012250 MS.gene03319:CDS
CATACCATCATTGCGACGTT+AGG 0.415601 6.2:+31011696 MS.gene03319:CDS
ACGATCGCTTCCACAACTTC+CGG 0.440285 6.2:-31012130 None:intergenic
GCAGCTTCTACCGGTGGAGC+TGG 0.446579 6.2:+31011959 MS.gene03319:CDS
TCTGAAGGGTGTTGTGTTGA+AGG 0.448691 6.2:+31012168 MS.gene03319:CDS
ACTGGTGCAGCCAGTGGAAT+TGG 0.449174 6.2:+31011563 MS.gene03319:CDS
ACAATAGATATAAATGTTGT+CGG 0.460253 6.2:+31011854 MS.gene03319:CDS
GGTTCATAATATAAAACAAA+TGG 0.461191 6.2:+31012285 MS.gene03319:CDS
CATCCCTAACGTCGCAATGA+TGG 0.461260 6.2:-31011700 None:intergenic
GGAATATTAGGCTCTTCATT+GGG 0.481611 6.2:+31011797 MS.gene03319:CDS
GCAAGTGTGGCAGCTTCTAC+CGG 0.482390 6.2:+31011950 MS.gene03319:CDS
AGAAACTGTTAATTTCACTT+TGG 0.484629 6.2:+31011736 MS.gene03319:CDS
CAAAATAGAGCCGGAAGTTG+TGG 0.492410 6.2:+31012120 MS.gene03319:CDS
ATACCATCATTGCGACGTTA+GGG 0.497406 6.2:+31011697 MS.gene03319:CDS
GATATCATGTTCAGCAATGC+CGG 0.499855 6.2:+31011776 MS.gene03319:CDS
TCTTGAACATTTAGGTTAGA+GGG 0.503233 6.2:+31011524 MS.gene03319:intron
CATAATTTGGTGGTTGATGG+TGG 0.514887 6.2:+31012253 MS.gene03319:CDS
TGCCTCTTCACCAATTCCAC+TGG 0.515824 6.2:-31011573 None:intergenic
CATCAGTGGTCATAATTTGG+TGG 0.524756 6.2:+31012243 MS.gene03319:CDS
TAAGCACGCTGCTCGTGCTA+TGG 0.527417 6.2:+31011892 MS.gene03319:CDS
TTGATCGGTGCACACGCGAA+AGG 0.535273 6.2:-31012100 None:intergenic
GCGGTGCATATGATCGATCC+AGG 0.538975 6.2:-31011929 None:intergenic
AAGTTCTAAGGGTAATCTGA+AGG 0.564554 6.2:+31012153 MS.gene03319:CDS
AAGGTGTTGCAACTCCGAAA+GGG 0.569228 6.2:-31012081 None:intergenic
AAAGGTGTTGCAACTCCGAA+AGG 0.570889 6.2:-31012082 None:intergenic
ACCACTAGGACCAGCTCCAC+CGG 0.570926 6.2:-31011969 None:intergenic
CACCGTTGATGATGAAGCAA+AGG 0.574370 6.2:+31011355 None:intergenic
GATGAAGCTGTTTACATCAG+TGG 0.575837 6.2:+31012229 MS.gene03319:CDS
AGAGCAGCATGTAGTGAACT+TGG 0.584268 6.2:+31012028 MS.gene03319:CDS
GAAGCGATCGTAAGTTCTAA+GGG 0.587496 6.2:+31012142 MS.gene03319:CDS
TGCACCGATCAAAATAGAGC+CGG 0.591663 6.2:+31012111 MS.gene03319:CDS
GGTAAGATAGCAATCATCAC+TGG 0.605060 6.2:+31011545 MS.gene03319:CDS
ATCATCACTGGTGCAGCCAG+TGG 0.607127 6.2:+31011557 MS.gene03319:CDS
AGTTCTAAGGGTAATCTGAA+GGG 0.611602 6.2:+31012154 MS.gene03319:CDS
GATCATATGCACCGCAAGTG+TGG 0.612160 6.2:+31011937 MS.gene03319:CDS
AGCCAGTGGAATTGGTGAAG+AGG 0.612587 6.2:+31011571 MS.gene03319:CDS
ACCGGTGGAGCTGGTCCTAG+TGG 0.613483 6.2:+31011968 MS.gene03319:CDS
GCAGCATGTAGTGAACTTGG+TGG 0.616204 6.2:+31012031 MS.gene03319:CDS
AGTGTGGCAGCTTCTACCGG+TGG 0.617157 6.2:+31011953 MS.gene03319:CDS
GGTAGAAGCTGCCACACTTG+CGG 0.622506 6.2:-31011948 None:intergenic
GGTTGATGGTGGCTTCTCTG+TGG 0.628769 6.2:+31012264 MS.gene03319:CDS
AGGTGTTGCAACTCCGAAAG+GGG 0.633333 6.2:-31012080 None:intergenic
TTTGATGCAGTATAACCACT+AGG 0.646200 6.2:-31011983 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAGATATAAATGTTGT+CGG + chr6.2:31011854-31011873 MS.gene03319:CDS 20.0%
!! ATACACACACATATATATAT+AGG - chr6.2:31011385-31011404 None:intergenic 20.0%
!! GGTTCATAATATAAAACAAA+TGG + chr6.2:31012285-31012304 MS.gene03319:CDS 20.0%
!! TACACACACATATATATATA+GGG - chr6.2:31011384-31011403 None:intergenic 20.0%
!! TCAAGAAAAACTAATCTAAA+GGG - chr6.2:31011432-31011451 None:intergenic 20.0%
!! TTCAAGAAAAACTAATCTAA+AGG - chr6.2:31011433-31011452 None:intergenic 20.0%
!!! TTTTTCTTTCTTGAACATTT+AGG + chr6.2:31011516-31011535 MS.gene03319:intron 20.0%
! AGAAACTGTTAATTTCACTT+TGG + chr6.2:31011736-31011755 MS.gene03319:CDS 25.0%
! CAAGAAAAACTAATCTAAAG+GGG - chr6.2:31011431-31011450 None:intergenic 25.0%
!! AATTTCACTTTGGAAAAACA+TGG + chr6.2:31011746-31011765 MS.gene03319:CDS 25.0%
!!! ATATGTGTGTGTATCTTTTT+TGG + chr6.2:31011391-31011410 MS.gene03319:intron 25.0%
GTAGACATTCAAGATGAATT+AGG + chr6.2:31011635-31011654 MS.gene03319:CDS 30.0%
TTACATCAGTGGTCATAATT+TGG + chr6.2:31012240-31012259 MS.gene03319:CDS 30.0%
! TCTTGAACATTTAGGTTAGA+GGG + chr6.2:31011524-31011543 MS.gene03319:intron 30.0%
! TTCTTGAACATTTAGGTTAG+AGG + chr6.2:31011523-31011542 MS.gene03319:intron 30.0%
!! CATCAAGTTGTTTCTTCAAT+AGG + chr6.2:31011659-31011678 MS.gene03319:CDS 30.0%
ATGGTTGCTAAAAATGTTCC+TGG + chr6.2:31011911-31011930 MS.gene03319:CDS 35.0%
CAATGAAGAGCCTAATATTC+CGG - chr6.2:31011798-31011817 None:intergenic 35.0%
GGAATATTAGGCTCTTCATT+GGG + chr6.2:31011797-31011816 MS.gene03319:CDS 35.0%
GTTAATAGTGTTTCCCCTTT+CGG + chr6.2:31012067-31012086 MS.gene03319:CDS 35.0%
TTTGATGCAGTATAACCACT+AGG - chr6.2:31011986-31012005 None:intergenic 35.0%
! GCATCAAAACATGCTCTTTT+GGG + chr6.2:31011998-31012017 MS.gene03319:CDS 35.0%
! TGCATCAAAACATGCTCTTT+TGG + chr6.2:31011997-31012016 MS.gene03319:CDS 35.0%
!! AAGTTCTAAGGGTAATCTGA+AGG + chr6.2:31012153-31012172 MS.gene03319:CDS 35.0%
!! AGTTCTAAGGGTAATCTGAA+GGG + chr6.2:31012154-31012173 MS.gene03319:CDS 35.0%
ATACCATCATTGCGACGTTA+GGG + chr6.2:31011697-31011716 MS.gene03319:CDS 40.0%
CATCAGTGGTCATAATTTGG+TGG + chr6.2:31012243-31012262 MS.gene03319:CDS 40.0%
CGGAATATTAGGCTCTTCAT+TGG + chr6.2:31011796-31011815 MS.gene03319:CDS 40.0%
GATATCATGTTCAGCAATGC+CGG + chr6.2:31011776-31011795 MS.gene03319:CDS 40.0%
GATGAAGCTGTTTACATCAG+TGG + chr6.2:31012229-31012248 MS.gene03319:CDS 40.0%
GGTAAGATAGCAATCATCAC+TGG + chr6.2:31011545-31011564 MS.gene03319:CDS 40.0%
GTGAAGTTGTTCGTCGAAAA+TGG + chr6.2:31011596-31011615 MS.gene03319:CDS 40.0%
TTCAGCAATGCCGGAATATT+AGG + chr6.2:31011785-31011804 MS.gene03319:CDS 40.0%
! GAAGCGATCGTAAGTTCTAA+GGG + chr6.2:31012142-31012161 MS.gene03319:CDS 40.0%
! GGTCATAATTTGGTGGTTGA+TGG + chr6.2:31012250-31012269 MS.gene03319:CDS 40.0%
! TGTAGTGAACTTGGTGGTTA+TGG + chr6.2:31012037-31012056 MS.gene03319:CDS 40.0%
!! CATAATTTGGTGGTTGATGG+TGG + chr6.2:31012253-31012272 MS.gene03319:CDS 40.0%
!!! AAAACATGCTCTTTTGGGAC+TGG + chr6.2:31012003-31012022 MS.gene03319:CDS 40.0%
!!! ACTTCCGGCTCTATTTTGAT+CGG - chr6.2:31012118-31012137 None:intergenic 40.0%
AGAGCAGCATGTAGTGAACT+TGG + chr6.2:31012028-31012047 MS.gene03319:CDS 45.0%
CAAAATAGAGCCGGAAGTTG+TGG + chr6.2:31012120-31012139 MS.gene03319:CDS 45.0%
CATACCATCATTGCGACGTT+AGG + chr6.2:31011696-31011715 MS.gene03319:CDS 45.0%
CGACGTTAGGGATGAAAAAC+AGG + chr6.2:31011709-31011728 MS.gene03319:CDS 45.0%
GGAAGCGATCGTAAGTTCTA+AGG + chr6.2:31012141-31012160 MS.gene03319:CDS 45.0%
! TGCACCGATCAAAATAGAGC+CGG + chr6.2:31012111-31012130 MS.gene03319:CDS 45.0%
!! AAAGGTGTTGCAACTCCGAA+AGG - chr6.2:31012085-31012104 None:intergenic 45.0%
!! AAGGTGTTGCAACTCCGAAA+GGG - chr6.2:31012084-31012103 None:intergenic 45.0%
!! TCTGAAGGGTGTTGTGTTGA+AGG + chr6.2:31012168-31012187 MS.gene03319:CDS 45.0%
ACGATCGCTTCCACAACTTC+CGG - chr6.2:31012133-31012152 None:intergenic 50.0%
AGCCAGTGGAATTGGTGAAG+AGG + chr6.2:31011571-31011590 MS.gene03319:CDS 50.0%
CATCCCTAACGTCGCAATGA+TGG - chr6.2:31011703-31011722 None:intergenic 50.0%
GATCATATGCACCGCAAGTG+TGG + chr6.2:31011937-31011956 MS.gene03319:CDS 50.0%
GCAGCATGTAGTGAACTTGG+TGG + chr6.2:31012031-31012050 MS.gene03319:CDS 50.0%
TGCCTCTTCACCAATTCCAC+TGG - chr6.2:31011576-31011595 None:intergenic 50.0%
! AGGTGTTGCAACTCCGAAAG+GGG - chr6.2:31012083-31012102 None:intergenic 50.0%
ACTGGTGCAGCCAGTGGAAT+TGG + chr6.2:31011563-31011582 MS.gene03319:CDS 55.0%
ATCATCACTGGTGCAGCCAG+TGG + chr6.2:31011557-31011576 MS.gene03319:CDS 55.0%
GCAAGTGTGGCAGCTTCTAC+CGG + chr6.2:31011950-31011969 MS.gene03319:CDS 55.0%
GCGGTGCATATGATCGATCC+AGG - chr6.2:31011932-31011951 None:intergenic 55.0%
GGTAGAAGCTGCCACACTTG+CGG - chr6.2:31011951-31011970 None:intergenic 55.0%
TAAGCACGCTGCTCGTGCTA+TGG + chr6.2:31011892-31011911 MS.gene03319:CDS 55.0%
TTGATCGGTGCACACGCGAA+AGG - chr6.2:31012103-31012122 None:intergenic 55.0%
!! GGTTGATGGTGGCTTCTCTG+TGG + chr6.2:31012264-31012283 MS.gene03319:CDS 55.0%
ACCACTAGGACCAGCTCCAC+CGG - chr6.2:31011972-31011991 None:intergenic 60.0%
AGTGTGGCAGCTTCTACCGG+TGG + chr6.2:31011953-31011972 MS.gene03319:CDS 60.0%
ACCGGTGGAGCTGGTCCTAG+TGG + chr6.2:31011968-31011987 MS.gene03319:CDS 65.0%
GCAGCTTCTACCGGTGGAGC+TGG + chr6.2:31011959-31011978 MS.gene03319:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 31011363 31012312 31011363 ID=MS.gene03319
chr6.2 mRNA 31011363 31012312 31011363 ID=MS.gene03319.t1;Parent=MS.gene03319
chr6.2 exon 31011363 31011376 31011363 ID=MS.gene03319.t1.exon1;Parent=MS.gene03319.t1
chr6.2 CDS 31011363 31011376 31011363 ID=cds.MS.gene03319.t1;Parent=MS.gene03319.t1
chr6.2 exon 31011538 31012312 31011538 ID=MS.gene03319.t1.exon2;Parent=MS.gene03319.t1
chr6.2 CDS 31011538 31012312 31011538 ID=cds.MS.gene03319.t1;Parent=MS.gene03319.t1
Gene Sequence

>MS.gene03319

ATGATGAAGCAAAGGTATCCCTATATATATATGTGTGTGTATCTTTTTTGGTGTAATATTTTTTTCCCCTTTAGATTAGTTTTTCTTGAAAATTGTTCATTCTAATTTGCACTTTTCAGCTCTATATATTTTGATTAGTTGACTTTACTTTTTTTTTTCTTTCTTGAACATTTAGGTTAGAGGGTAAGATAGCAATCATCACTGGTGCAGCCAGTGGAATTGGTGAAGAGGCAGTGAAGTTGTTCGTCGAAAATGGAGCATTTGTTGTTGCAGTAGACATTCAAGATGAATTAGGTCATCAAGTTGTTTCTTCAATAGGCTCAAATAAAGTGACATACCATCATTGCGACGTTAGGGATGAAAAACAGGTTGAAGAAACTGTTAATTTCACTTTGGAAAAACATGGTCAACTTGATATCATGTTCAGCAATGCCGGAATATTAGGCTCTTCATTGGGCGTACTCGAGTTCGATCTAAATGAATTCAAGAACACAATAGATATAAATGTTGTCGGTTCAGCTGCTATGATTAAGCACGCTGCTCGTGCTATGGTTGCTAAAAATGTTCCTGGATCGATCATATGCACCGCAAGTGTGGCAGCTTCTACCGGTGGAGCTGGTCCTAGTGGTTATACTGCATCAAAACATGCTCTTTTGGGACTGGTGAGAGCAGCATGTAGTGAACTTGGTGGTTATGGAATAAGAGTTAATAGTGTTTCCCCTTTCGGAGTTGCAACACCTTTCGCGTGTGCACCGATCAAAATAGAGCCGGAAGTTGTGGAAGCGATCGTAAGTTCTAAGGGTAATCTGAAGGGTGTTGTGTTGAAGGCTAAGCATATTGCAGAAGCAGCTTTGTTTCTTGCTTCTGATGAAGCTGTTTACATCAGTGGTCATAATTTGGTGGTTGATGGTGGCTTCTCTGTGGTTCATAATATAAAACAAATGGTTTAA
Protein sequence

>MS.gene03319.t1

MMKQRLEGKIAIITGAASGIGEEAVKLFVENGAFVVAVDIQDELGHQVVSSIGSNKVTYHHCDVRDEKQVEETVNFTLEKHGQLDIMFSNAGILGSSLGVLEFDLNEFKNTIDINVVGSAAMIKHAARAMVAKNVPGSIICTASVAASTGGAGPSGYTASKHALLGLVRAACSELGGYGIRVNSVSPFGVATPFACAPIKIEPEVVEAIVSSKGNLKGVVLKAKHIAEAALFLASDEAVYISGHNLVVDGGFSVVHNIKQMV