AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028938

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028938.t1 MTR_2g090165 95.076 264 13 0 1 264 1 264 0.0 512
MS.gene028938.t1 MTR_7g110130 81.579 266 47 2 1 264 1 266 5.00e-155 432
MS.gene028938.t1 MTR_7g110160 77.308 260 41 2 1 260 1 242 5.58e-141 396
MS.gene028938.t1 MTR_7g110140 68.966 261 80 1 1 261 1 260 3.01e-129 367
MS.gene028938.t1 MTR_6g035395 62.745 255 82 1 3 257 2 243 9.75e-109 314
MS.gene028938.t1 MTR_6g023590 50.598 251 122 2 5 253 12 262 2.54e-86 258
MS.gene028938.t1 MTR_6g023610 51.600 250 119 2 5 252 12 261 4.39e-81 245
MS.gene028938.t1 MTR_6g023910 50.593 253 123 2 2 252 9 261 4.78e-81 245
MS.gene028938.t1 MTR_6g023950 50.996 251 121 2 5 253 12 262 5.18e-81 244
MS.gene028938.t1 MTR_7g071680 50.360 278 116 4 2 259 25 300 1.97e-80 244
MS.gene028938.t1 MTR_6g023600 49.004 251 126 2 5 253 12 262 5.47e-79 239
MS.gene028938.t1 MTR_7g105460 48.617 253 128 2 5 256 12 263 5.61e-79 239
MS.gene028938.t1 MTR_4g052340 50.787 254 120 3 4 256 12 261 1.15e-78 239
MS.gene028938.t1 MTR_6g023990 47.244 254 132 2 2 253 10 263 2.00e-78 238
MS.gene028938.t1 MTR_4g052320 50.000 256 124 3 2 256 4 256 2.30e-78 238
MS.gene028938.t1 MTR_4g052350 50.588 255 121 3 4 257 12 262 3.70e-78 238
MS.gene028938.t1 MTR_4g052300 49.609 256 124 3 2 256 4 255 1.07e-76 233
MS.gene028938.t1 MTR_6g023600 48.207 251 122 3 5 253 12 256 9.97e-75 228
MS.gene028938.t1 MTR_7g107670 44.922 256 133 4 4 253 31 284 1.01e-70 219
MS.gene028938.t1 MTR_7g083870 46.617 266 132 7 4 261 33 296 1.92e-70 219
MS.gene028938.t1 MTR_7g105580 45.594 261 123 4 4 263 6 248 2.78e-64 201
MS.gene028938.t1 MTR_4g078630 43.223 273 142 5 1 264 14 282 9.57e-64 201
MS.gene028938.t1 MTR_3g020670 43.494 269 141 5 4 263 14 280 4.44e-62 197
MS.gene028938.t1 MTR_7g105590 48.677 189 95 2 4 191 6 193 7.54e-54 173
MS.gene028938.t1 MTR_7g105570 48.619 181 91 2 77 256 41 220 5.66e-50 164
MS.gene028938.t1 MTR_3g113870 44.737 190 102 3 14 202 29 216 3.73e-49 162
MS.gene028938.t1 MTR_4g084800 49.640 139 69 1 4 141 11 149 7.01e-40 135
MS.gene028938.t1 MTR_4g058840 31.071 280 145 8 1 251 1 261 3.04e-25 101
MS.gene028938.t1 MTR_4g058820 31.071 280 145 8 1 251 1 261 3.04e-25 101
MS.gene028938.t1 MTR_6g023940 34.826 201 67 4 2 200 9 147 4.60e-25 97.8
MS.gene028938.t1 MTR_4g058810 30.037 273 163 6 1 254 1 264 3.98e-22 92.8
MS.gene028938.t1 MTR_3g085740 26.616 263 162 10 4 252 73 318 1.27e-20 89.7
MS.gene028938.t1 MTR_4g131740 27.863 262 163 8 5 251 39 289 1.60e-20 89.0
MS.gene028938.t1 MTR_7g113650 26.316 266 170 7 5 256 39 292 2.56e-20 88.2
MS.gene028938.t1 MTR_1g051165 28.137 263 175 5 4 254 12 272 4.93e-20 87.4
MS.gene028938.t1 MTR_1g082760 28.731 268 161 10 5 256 39 292 6.11e-20 87.4
MS.gene028938.t1 MTR_1196s0010 32.411 253 150 9 7 252 275 513 1.61e-19 87.8
MS.gene028938.t1 MTR_4g132850 28.346 254 167 6 4 252 5 248 2.00e-19 85.1
MS.gene028938.t1 MTR_4g064887 26.493 268 173 8 2 259 11 264 1.65e-16 77.4
MS.gene028938.t1 MTR_3g068070 26.070 257 180 6 2 254 11 261 1.54e-15 74.7
MS.gene028938.t1 MTR_7g105560 62.500 56 21 0 4 59 11 66 3.91e-15 71.2
MS.gene028938.t1 MTR_3g068065 26.190 252 176 6 6 253 17 262 5.17e-15 73.2
MS.gene028938.t1 MTR_3g068085 26.718 262 181 7 6 263 15 269 6.38e-15 73.2
MS.gene028938.t1 MTR_8g442750 28.358 268 172 10 6 260 14 274 7.75e-15 73.2
MS.gene028938.t1 MTR_4g064887 29.353 201 129 5 2 195 11 205 2.18e-14 70.9
MS.gene028938.t1 MTR_3g068175 28.090 267 181 8 1 263 12 271 2.44e-14 71.2
MS.gene028938.t1 MTR_4g086410 27.203 261 149 7 8 248 6 245 1.49e-13 70.5
MS.gene028938.t1 MTR_4g058830 32.075 159 104 3 95 251 51 207 1.51e-13 68.2
MS.gene028938.t1 MTR_3g068155 26.866 268 164 9 3 255 16 266 4.82e-13 67.8
MS.gene028938.t1 MTR_7g063330 28.897 263 166 10 2 253 11 263 6.69e-13 67.4
MS.gene028938.t1 MTR_8g096580 28.194 227 143 6 4 225 43 254 9.27e-13 67.4
MS.gene028938.t1 MTR_4g086400 27.536 207 128 4 8 197 6 207 1.13e-12 67.8
MS.gene028938.t1 MTR_7g094520 30.078 256 163 8 6 252 11 259 1.22e-12 66.6
MS.gene028938.t1 MTR_3g087860 33.094 139 87 3 56 192 59 193 1.28e-12 66.6
MS.gene028938.t1 MTR_3g068175 27.675 271 181 9 1 263 12 275 2.89e-12 65.5
MS.gene028938.t1 MTR_7g063320 30.268 261 164 9 2 252 11 263 4.63e-12 64.7
MS.gene028938.t1 MTR_7g063360 27.376 263 173 9 2 254 12 266 5.61e-12 64.7
MS.gene028938.t1 MTR_7g063390 25.954 262 178 7 2 254 12 266 9.96e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028938.t1 AT2G47140 61.176 255 99 0 1 255 1 255 7.85e-112 323
MS.gene028938.t1 AT3G29250 58.203 256 107 0 1 256 1 256 7.09e-103 300
MS.gene028938.t1 AT3G29250 58.203 256 107 0 1 256 37 292 2.27e-102 300
MS.gene028938.t1 AT2G47130 58.984 256 104 1 1 256 1 255 7.24e-102 297
MS.gene028938.t1 AT3G29250 57.874 254 107 0 3 256 41 294 1.93e-101 298
MS.gene028938.t1 AT2G47120 56.641 256 109 2 1 256 1 254 1.03e-100 294
MS.gene028938.t1 AT3G29260 58.594 256 105 1 1 256 1 255 7.96e-100 292
MS.gene028938.t1 AT2G47120 56.746 252 107 2 5 256 6 255 9.08e-100 292
MS.gene028938.t1 AT3G51680 48.529 272 124 3 4 259 30 301 1.11e-76 235
MS.gene028938.t1 AT3G26770 43.494 269 138 6 4 261 39 304 4.34e-64 203
MS.gene028938.t1 AT4G03140 43.411 258 138 4 4 255 76 331 6.30e-63 201
MS.gene028938.t1 AT1G52340 45.693 267 127 6 4 256 16 278 5.68e-62 197
MS.gene028938.t1 AT3G26760 40.000 270 150 5 2 261 32 299 1.19e-61 196
MS.gene028938.t1 AT3G42960 43.820 267 126 4 2 253 4 261 1.43e-55 180
MS.gene028938.t1 AT2G47150 36.255 251 107 6 6 256 1 198 2.14e-37 131
MS.gene028938.t1 AT3G55290 29.278 263 157 6 6 251 17 267 6.98e-21 89.7
MS.gene028938.t1 AT3G55290 29.278 263 157 6 6 251 18 268 7.09e-21 89.7
MS.gene028938.t1 AT1G62610 29.412 255 168 5 6 251 15 266 4.69e-20 87.4
MS.gene028938.t1 AT1G62610 29.412 255 168 5 6 251 13 264 5.04e-20 87.4
MS.gene028938.t1 AT1G62610 29.412 255 168 5 6 251 14 265 5.27e-20 87.4
MS.gene028938.t1 AT1G62610 29.412 255 168 5 6 251 19 270 5.30e-20 87.4
MS.gene028938.t1 AT1G07450 28.736 261 169 7 1 254 3 253 5.69e-20 86.7
MS.gene028938.t1 AT3G55310 29.057 265 155 7 6 251 17 267 1.04e-18 83.6
MS.gene028938.t1 AT2G29310 27.778 270 157 8 3 254 4 253 1.29e-18 83.2
MS.gene028938.t1 AT3G46170 28.458 253 172 5 6 251 26 276 1.32e-18 83.6
MS.gene028938.t1 AT2G29340 28.788 264 162 8 3 254 4 253 1.69e-18 82.8
MS.gene028938.t1 AT2G29340 29.008 262 164 9 3 254 4 253 2.28e-18 83.2
MS.gene028938.t1 AT1G63380 27.715 267 163 6 6 254 15 269 2.39e-18 82.8
MS.gene028938.t1 AT1G63380 27.715 267 163 6 6 254 19 273 2.57e-18 82.8
MS.gene028938.t1 AT1G63380 27.715 267 163 6 6 254 22 276 2.78e-18 82.8
MS.gene028938.t1 AT1G63380 27.715 267 163 6 6 254 17 271 2.88e-18 82.4
MS.gene028938.t1 AT4G05530 30.709 254 161 7 4 252 7 250 4.24e-18 81.6
MS.gene028938.t1 AT1G24360 25.856 263 168 10 4 254 72 319 1.17e-17 81.3
MS.gene028938.t1 AT2G29150 28.185 259 171 8 2 254 12 261 3.72e-17 79.3
MS.gene028938.t1 AT1G54870 26.316 266 170 7 5 256 83 336 4.44e-17 80.1
MS.gene028938.t1 AT1G54870 26.316 266 170 7 5 256 81 334 4.63e-17 79.7
MS.gene028938.t1 AT2G17845 27.341 267 168 7 6 255 47 304 6.04e-17 79.3
MS.gene028938.t1 AT2G30670 26.275 255 180 5 3 254 4 253 1.67e-16 77.4
MS.gene028938.t1 AT5G06060 29.070 258 169 7 3 254 6 255 2.20e-16 77.0
MS.gene028938.t1 AT2G29290 27.652 264 165 6 3 254 4 253 2.75e-16 76.6
MS.gene028938.t1 AT1G07440 27.734 256 174 8 3 254 9 257 2.53e-15 74.3
MS.gene028938.t1 AT2G29370 27.068 266 176 8 3 260 13 268 3.86e-15 73.6
MS.gene028938.t1 AT2G29350 27.027 259 174 7 2 254 11 260 4.71e-15 73.6
MS.gene028938.t1 AT2G29360 27.099 262 169 9 3 254 13 262 7.38e-15 72.8
MS.gene028938.t1 AT2G29260 28.413 271 158 10 2 254 62 314 9.68e-15 73.2
MS.gene028938.t1 AT2G29340 30.151 199 128 7 3 195 4 197 2.01e-14 70.5
MS.gene028938.t1 AT2G29340 30.151 199 128 7 3 195 4 197 2.01e-14 70.5
MS.gene028938.t1 AT3G05260 26.437 261 172 8 5 254 36 287 2.16e-14 72.0
MS.gene028938.t1 AT3G12800 28.413 271 171 11 6 261 10 272 2.75e-14 71.6
MS.gene028938.t1 AT2G29290 28.000 200 138 4 56 254 42 236 2.90e-14 70.9
MS.gene028938.t1 AT1G49670 30.045 223 125 7 8 210 6 217 4.27e-14 72.4
MS.gene028938.t1 AT1G49670 30.045 223 125 7 8 210 6 217 4.66e-14 72.0
MS.gene028938.t1 AT1G10310 33.333 132 86 2 63 194 73 202 1.72e-13 68.6
MS.gene028938.t1 AT4G13180 31.034 261 158 10 6 254 13 263 4.83e-13 67.8
MS.gene028938.t1 AT2G29310 28.019 207 122 6 3 195 4 197 6.26e-13 66.2
MS.gene028938.t1 AT5G50770 28.796 191 128 5 1 187 40 226 2.81e-12 66.2
MS.gene028938.t1 AT2G29330 26.172 256 179 6 3 254 4 253 4.35e-12 65.1
MS.gene028938.t1 AT2G29350 27.000 200 139 5 56 254 29 222 5.38e-12 64.3
MS.gene028938.t1 AT2G29350 27.500 200 134 5 2 195 11 205 1.18e-11 63.2
MS.gene028938.t1 AT2G29310 25.862 232 152 7 32 254 31 251 2.34e-11 62.8
MS.gene028938.t1 AT5G18210 28.148 270 161 11 2 252 4 259 4.38e-11 62.0

Find 52 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGTGAGCTTGGAGCTTA+TGG 0.278067 2.3:-10655199 MS.gene028938:CDS
AGCAGATATCAATGATGAAT+TGG 0.283540 2.3:-10655602 MS.gene028938:CDS
TGGTGTTGTCAAATTCATTT+AGG 0.283555 2.3:+10655401 None:intergenic
GCATCAAAACATGGTCTTAT+AGG 0.284802 2.3:-10655238 MS.gene028938:CDS
CATCATGTTGCAAATTCAAT+AGG 0.308261 2.3:-10655577 MS.gene028938:CDS
GTAAAGATATTCGTGGAAAA+TGG 0.310172 2.3:-10655640 MS.gene028938:CDS
TACACTGGCAGTGCAAATTA+TGG 0.353051 2.3:+10655300 None:intergenic
TCATGATTATGCTAATTTGC+AGG 0.357464 2.3:-10655083 MS.gene028938:CDS
GATGAATCTGCTTATGTTAG+TGG 0.370705 2.3:-10655007 MS.gene028938:CDS
ATGGTCTTATAGGACTTGTT+AGG 0.392057 2.3:-10655228 MS.gene028938:CDS
GCTTTCACGTTGGAGAGATA+TGG 0.399630 2.3:-10655490 MS.gene028938:CDS
ACTGGGGCAGCAAGCGGAAT+AGG 0.399759 2.3:-10655673 MS.gene028938:CDS
ACCAACAGCTTCAACTTCAC+TGG 0.415009 2.3:+10655105 None:intergenic
ATTTGCACTGCCAGTGTAGC+TGG 0.419113 2.3:-10655295 MS.gene028938:CDS
CAACTTGTTTCTCATCTCTC+AGG 0.421960 2.3:+10655524 None:intergenic
ATTGCTGAACATGATGTCTA+AGG 0.424678 2.3:+10655465 None:intergenic
TGATCATAGGTTGGAGGGTA+AGG 0.428592 2.3:-10655707 MS.gene028938:intron
AATTCTAGTATGCTAGATAA+AGG 0.435820 2.3:+10655427 None:intergenic
ATCATGTTGCAAATTCAATA+GGG 0.440902 2.3:-10655576 MS.gene028938:CDS
GACATCATGTTCAGCAATGC+TGG 0.459929 2.3:-10655460 MS.gene028938:CDS
GCAGATATCAATGATGAATT+GGG 0.463215 2.3:-10655601 MS.gene028938:CDS
GTGGCTTCTCAGTCATTAAT+CGG 0.474841 2.3:-10654964 MS.gene028938:CDS
TTCAGCAATGCTGGTAATGC+TGG 0.487409 2.3:-10655451 MS.gene028938:CDS
TTTGCAGGGAATTACATTGA+AGG 0.494365 2.3:-10655068 MS.gene028938:CDS
AGAGGTGTAGCAACAGCATA+AGG 0.501265 2.3:+10655154 None:intergenic
GGTAAGGTAGCTATAGTGAC+TGG 0.506112 2.3:-10655691 MS.gene028938:CDS
GGACACAACTTGGTCGTTGA+TGG 0.511755 2.3:-10654986 MS.gene028938:CDS
CATGATTATGCTAATTTGCA+GGG 0.513662 2.3:-10655082 MS.gene028938:CDS
AGGTCAACATGCAGTGAGCT+TGG 0.516394 2.3:-10655208 MS.gene028938:CDS
ACCTCTTGCATGTAGAGCAC+TGG 0.521993 2.3:-10655137 MS.gene028938:CDS
CAAGCATGCTGCACGTGTAA+TGG 0.527529 2.3:-10655344 MS.gene028938:CDS
ACCAACAAAACCAGCTACAC+TGG 0.550665 2.3:+10655285 None:intergenic
TTATGTTAGTGGACACAACT+TGG 0.559853 2.3:-10654996 MS.gene028938:CDS
ACCATGGCTGTGAACGTTCG+TGG 0.565494 2.3:-10655382 MS.gene028938:CDS
CCAACAGCTTCAACTTCACT+GGG 0.567306 2.3:+10655106 None:intergenic
ACCACGAACGTTCACAGCCA+TGG 0.577592 2.3:+10655381 None:intergenic
AGAAGCAGTAAAGATATTCG+TGG 0.578218 2.3:-10655647 MS.gene028938:CDS
GTAAGGTAGCTATAGTGACT+GGG 0.582532 2.3:-10655690 MS.gene028938:CDS
CCCAGTGAAGTTGAAGCTGT+TGG 0.588946 2.3:-10655106 MS.gene028938:CDS
CACAACTTGGTCGTTGATGG+TGG 0.601290 2.3:-10654983 MS.gene028938:CDS
TCCAGTGCTCTACATGCAAG+AGG 0.608317 2.3:+10655136 None:intergenic
ATAGTGACTGGGGCAGCAAG+CGG 0.610587 2.3:-10655679 MS.gene028938:CDS
CATCTCTCAGGTCACAGTGG+TGG 0.620723 2.3:+10655536 None:intergenic
GGAAATTGTTGCTTTCACGT+TGG 0.626510 2.3:-10655500 MS.gene028938:CDS
TGCATGTAGAGCACTGGACA+TGG 0.628198 2.3:-10655131 MS.gene028938:CDS
AATCATCAATGTCAAAACAA+AGG 0.629421 2.3:-10655836 None:intergenic
GCATGCTGCACGTGTAATGG+TGG 0.633944 2.3:-10655341 MS.gene028938:CDS
GAGAGATGAGAAACAAGTTG+AGG 0.635217 2.3:-10655521 MS.gene028938:CDS
GATTATACAGCATCAAAACA+TGG 0.649473 2.3:-10655247 MS.gene028938:CDS
TCTCATCTCTCAGGTCACAG+TGG 0.665905 2.3:+10655533 None:intergenic
AAATGAATTTGACAACACCA+TGG 0.674818 2.3:-10655398 MS.gene028938:CDS
TAAGGTAGCTATAGTGACTG+GGG 0.695873 2.3:-10655689 MS.gene028938:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTTTATGATCAT+AGG - chr2.3:10655048-10655067 MS.gene028938:CDS 10.0%
!!! TTTATTTTATGATCATAGGT+TGG - chr2.3:10655052-10655071 MS.gene028938:CDS 20.0%
! AATTCTAGTATGCTAGATAA+AGG + chr2.3:10655344-10655363 None:intergenic 25.0%
! ATCATGTTGCAAATTCAATA+GGG - chr2.3:10655192-10655211 MS.gene028938:CDS 25.0%
AAATGAATTTGACAACACCA+TGG - chr2.3:10655370-10655389 MS.gene028938:CDS 30.0%
AGCAGATATCAATGATGAAT+TGG - chr2.3:10655166-10655185 MS.gene028938:CDS 30.0%
CATCATGTTGCAAATTCAAT+AGG - chr2.3:10655191-10655210 MS.gene028938:CDS 30.0%
GATTATACAGCATCAAAACA+TGG - chr2.3:10655521-10655540 MS.gene028938:CDS 30.0%
GCAGATATCAATGATGAATT+GGG - chr2.3:10655167-10655186 MS.gene028938:CDS 30.0%
GTAAAGATATTCGTGGAAAA+TGG - chr2.3:10655128-10655147 MS.gene028938:CDS 30.0%
TGTTATAAGCCAATAGAAAC+TGG + chr2.3:10655014-10655033 None:intergenic 30.0%
! CATGATTATGCTAATTTGCA+GGG - chr2.3:10655686-10655705 MS.gene028938:CDS 30.0%
! TCATGATTATGCTAATTTGC+AGG - chr2.3:10655685-10655704 MS.gene028938:CDS 30.0%
!! ATTTTATGATCATAGGTTGG+AGG - chr2.3:10655055-10655074 MS.gene028938:CDS 30.0%
!! TGGTGTTGTCAAATTCATTT+AGG + chr2.3:10655370-10655389 None:intergenic 30.0%
!! TTTTATGATCATAGGTTGGA+GGG - chr2.3:10655056-10655075 MS.gene028938:CDS 30.0%
AGAAGCAGTAAAGATATTCG+TGG - chr2.3:10655121-10655140 MS.gene028938:CDS 35.0%
ATTGCTGAACATGATGTCTA+AGG + chr2.3:10655306-10655325 None:intergenic 35.0%
GATGAATCTGCTTATGTTAG+TGG - chr2.3:10655761-10655780 MS.gene028938:intron 35.0%
TTTGCAGGGAATTACATTGA+AGG - chr2.3:10655700-10655719 MS.gene028938:CDS 35.0%
! ATGGTGGAAAGAAAAATACG+TGG - chr2.3:10655443-10655462 MS.gene028938:CDS 35.0%
! TTATGTTAGTGGACACAACT+TGG - chr2.3:10655772-10655791 MS.gene028938:intron 35.0%
!! ATGGTCTTATAGGACTTGTT+AGG - chr2.3:10655540-10655559 MS.gene028938:CDS 35.0%
!! GCATCAAAACATGGTCTTAT+AGG - chr2.3:10655530-10655549 MS.gene028938:CDS 35.0%
ACACTGTACTAGCTAGAAAG+AGG + chr2.3:10654988-10655007 None:intergenic 40.0%
CACTGTACTAGCTAGAAAGA+GGG + chr2.3:10654987-10655006 None:intergenic 40.0%
CAGTGTCTACCAGTTTCTAT+TGG - chr2.3:10655002-10655021 MS.gene028938:CDS 40.0%
GAGAGATGAGAAACAAGTTG+AGG - chr2.3:10655247-10655266 MS.gene028938:CDS 40.0%
GTAAGGTAGCTATAGTGACT+GGG - chr2.3:10655078-10655097 MS.gene028938:CDS 40.0%
GTGGCTTCTCAGTCATTAAT+CGG - chr2.3:10655804-10655823 MS.gene028938:intron 40.0%
TAAGGTAGCTATAGTGACTG+GGG - chr2.3:10655079-10655098 MS.gene028938:CDS 40.0%
TACACTGGCAGTGCAAATTA+TGG + chr2.3:10655471-10655490 None:intergenic 40.0%
! CAACTTGTTTCTCATCTCTC+AGG + chr2.3:10655247-10655266 None:intergenic 40.0%
!! GGAAATTGTTGCTTTCACGT+TGG - chr2.3:10655268-10655287 MS.gene028938:CDS 40.0%
ACCAACAAAACCAGCTACAC+TGG + chr2.3:10655486-10655505 None:intergenic 45.0%
ACCAACAGCTTCAACTTCAC+TGG + chr2.3:10655666-10655685 None:intergenic 45.0%
CCAACAGCTTCAACTTCACT+GGG + chr2.3:10655665-10655684 None:intergenic 45.0%
GACATCATGTTCAGCAATGC+TGG - chr2.3:10655308-10655327 MS.gene028938:CDS 45.0%
GCTTTCACGTTGGAGAGATA+TGG - chr2.3:10655278-10655297 MS.gene028938:CDS 45.0%
GGTAAGGTAGCTATAGTGAC+TGG - chr2.3:10655077-10655096 MS.gene028938:CDS 45.0%
! AGAGGTGTAGCAACAGCATA+AGG + chr2.3:10655617-10655636 None:intergenic 45.0%
! TGATCATAGGTTGGAGGGTA+AGG - chr2.3:10655061-10655080 MS.gene028938:CDS 45.0%
! TTCAGCAATGCTGGTAATGC+TGG - chr2.3:10655317-10655336 MS.gene028938:CDS 45.0%
!!! AGTGTAGCTGGTTTTGTTGG+TGG - chr2.3:10655485-10655504 MS.gene028938:CDS 45.0%
ACCTCTTGCATGTAGAGCAC+TGG - chr2.3:10655631-10655650 MS.gene028938:CDS 50.0%
AGGTCAACATGCAGTGAGCT+TGG - chr2.3:10655560-10655579 MS.gene028938:CDS 50.0%
ATTTGCACTGCCAGTGTAGC+TGG - chr2.3:10655473-10655492 MS.gene028938:CDS 50.0%
CAAGCATGCTGCACGTGTAA+TGG - chr2.3:10655424-10655443 MS.gene028938:CDS 50.0%
CCCAGTGAAGTTGAAGCTGT+TGG - chr2.3:10655662-10655681 MS.gene028938:CDS 50.0%
GGACACAACTTGGTCGTTGA+TGG - chr2.3:10655782-10655801 MS.gene028938:intron 50.0%
TCCAGTGCTCTACATGCAAG+AGG + chr2.3:10655635-10655654 None:intergenic 50.0%
TCTCATCTCTCAGGTCACAG+TGG + chr2.3:10655238-10655257 None:intergenic 50.0%
TGCAGTGAGCTTGGAGCTTA+TGG - chr2.3:10655569-10655588 MS.gene028938:CDS 50.0%
! CACAACTTGGTCGTTGATGG+TGG - chr2.3:10655785-10655804 MS.gene028938:intron 50.0%
!! TGCATGTAGAGCACTGGACA+TGG - chr2.3:10655637-10655656 MS.gene028938:CDS 50.0%
!!! GCCAGTGTAGCTGGTTTTGT+TGG - chr2.3:10655482-10655501 MS.gene028938:CDS 50.0%
!!! GGTTTTGTTGGTGGATGTGC+AGG - chr2.3:10655494-10655513 MS.gene028938:CDS 50.0%
ACCACGAACGTTCACAGCCA+TGG + chr2.3:10655390-10655409 None:intergenic 55.0%
ACCATGGCTGTGAACGTTCG+TGG - chr2.3:10655386-10655405 MS.gene028938:CDS 55.0%
ATAGTGACTGGGGCAGCAAG+CGG - chr2.3:10655089-10655108 MS.gene028938:CDS 55.0%
CATCTCTCAGGTCACAGTGG+TGG + chr2.3:10655235-10655254 None:intergenic 55.0%
GCATGCTGCACGTGTAATGG+TGG - chr2.3:10655427-10655446 MS.gene028938:CDS 55.0%
ACTGGGGCAGCAAGCGGAAT+AGG - chr2.3:10655095-10655114 MS.gene028938:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 10654940 10655850 10654940 ID=MS.gene028938
chr2.3 mRNA 10654940 10655850 10654940 ID=MS.gene028938.t1;Parent=MS.gene028938
chr2.3 exon 10655837 10655850 10655837 ID=MS.gene028938.t1.exon1;Parent=MS.gene028938.t1
chr2.3 CDS 10655837 10655850 10655837 ID=cds.MS.gene028938.t1;Parent=MS.gene028938.t1
chr2.3 exon 10654940 10655720 10654940 ID=MS.gene028938.t1.exon2;Parent=MS.gene028938.t1
chr2.3 CDS 10654940 10655720 10654940 ID=cds.MS.gene028938.t1;Parent=MS.gene028938.t1
Gene Sequence

>MS.gene028938

ATGTCAAAACAAAGGTACGTATAACTTTGTATATTTATGAATCTCCCTCTTTCTAGCTAGTACAGTGTCTACCAGTTTCTATTGGCTTATAACAAATTAATGAATAGTATATTTTATTTTATGATCATAGGTTGGAGGGTAAGGTAGCTATAGTGACTGGGGCAGCAAGCGGAATAGGAGCAGAAGCAGTAAAGATATTCGTGGAAAATGGAGCATTTGTAGTCATAGCAGATATCAATGATGAATTGGGTCATCATGTTGCAAATTCAATAGGGTTAGACAAAGTGAGTTACCACCACTGTGACCTGAGAGATGAGAAACAAGTTGAGGAAATTGTTGCTTTCACGTTGGAGAGATATGGTACCTTAGACATCATGTTCAGCAATGCTGGTAATGCTGGTCCTTTATCTAGCATACTAGAATTTGACCTAAATGAATTTGACAACACCATGGCTGTGAACGTTCGTGGTGCAGCTGCAACTATCAAGCATGCTGCACGTGTAATGGTGGAAAGAAAAATACGTGGATCCATAATTTGCACTGCCAGTGTAGCTGGTTTTGTTGGTGGATGTGCAGGACATGATTATACAGCATCAAAACATGGTCTTATAGGACTTGTTAGGTCAACATGCAGTGAGCTTGGAGCTTATGGAATCAGAGTCAATTCAATCTCACCTTATGCTGTTGCTACACCTCTTGCATGTAGAGCACTGGACATGGTGCCCAGTGAAGTTGAAGCTGTTGGTCATGATTATGCTAATTTGCAGGGAATTACATTGAAGGCTGCTCATATTGCAGAGACTGCTTTGTTTCTTGCATCTGATGAATCTGCTTATGTTAGTGGACACAACTTGGTCGTTGATGGTGGCTTCTCAGTCATTAATCGGTGTCTTCCTAGTATTAAAAAATGA
Protein sequence

>MS.gene028938.t1

MSKQRLEGKVAIVTGAASGIGAEAVKIFVENGAFVVIADINDELGHHVANSIGLDKVSYHHCDLRDEKQVEEIVAFTLERYGTLDIMFSNAGNAGPLSSILEFDLNEFDNTMAVNVRGAAATIKHAARVMVERKIRGSIICTASVAGFVGGCAGHDYTASKHGLIGLVRSTCSELGAYGIRVNSISPYAVATPLACRALDMVPSEVEAVGHDYANLQGITLKAAHIAETALFLASDESAYVSGHNLVVDGGFSVINRCLPSIKK